Psyllid ID: psy12422

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFFAIVH
Secondary Structure (PSIPRED)
cccEEEEEEEccccccEEEEEEccEEccccccEEEEEccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEEccccccccccEEEEEEccccEEEEEEEEccccEEEEcccEEcccEEEEcccccEEEEEEEcccccEEEEEEEEcccccEEEEEEEEEEcccccccccccccccccccccccccEEEEccccEEEcccccEEEEEEEEEEcccEEEEEEccEEccccccEEEEEEccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEcEEccccEEEEEEccEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEEcccccccccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccccEEEEEEccEEEccccEEEEEEccEEEEEEEEcccccccEEEEEEEEccccccEEEEEEEEcccccccccccccEEEEcccEEEEEEEEccccccEEEEEEccEEEEcccEEEEEEcccEEEEEEEEEcccEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEcccccccccEEcccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEcccccEEEEEcccEEEEEEEEcccccccEEEEEEEEccccEEEEEEEEEEcccccccccccccEEEEEEEEcccccccEEEEEEEEcccccEEEEEEEEEccccccccccccEccccccEEEEEEc
Coil and Loop (DISEMBL)
MQNVIKVKvgstkppptvkwykgnrelskrdysmsysdgvvsmeiidckpedsgeykcvatnkhgtdetnCVVIVESEEESKEQQELAHNFLYSGDRKYiekhirpapaiitTRQEikssysshtddtgrtttqmstlssnyssstnnatspskkITRRMNsildtdspsrsrsttkelimppdtamtppqfankltdktiddgqcldlsavvkgdpeprvswtkngqplnssnildlkykngvaslqiqevfpedegvyvctatnslgtaetkckltplnssnildlkykngvaslqiqevfpedegvyvctatnslgtaetkckltvrstpaanlgkspskesdkaprffaivh
Flexible Loop (DISEMBL)
mqnvikvkvgstkppptvkwykgnrelskrdySMSYSDGVVSMEIIDCKPEDSGEYKCVAtnkhgtdetNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAiittrqeikssysshtddtgrtttqmstlssnyssstnnatspskkitrrmnsildtdspsrsrsttkelimppdtamtppQFANKLTDKTIDDGQCLDLsavvkgdpeprvswtkngqplnssniLDLKYKNGVASLQIQevfpedegVYVCTATNslgtaetkckltplnSSNILDLKYKNGVASLQIQevfpedegVYVCTATnslgtaetkckltvrstpaanlgkspskesdkaprffaivh
Low Complexity Region (SEG)
MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVeseeeskeqqeLAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMstlssnyssstnnatspsKKITRRMNSILdtdspsrsrsttKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFFAIVH
Disordered region (IsUnstruct)
*******************WY************MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV************AHNFLYSGDRKYIEKHIRPAPAIIT******************************************************************************************DGQCLDLSAVV*******************SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT****************************
Disordered Region (DISOPRED)
MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI*****************LYSGDRKYIEKHIRPAPAIITTRQEIK**********GRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNS***********************AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV********************RFFAIVH
Disordered Region (DISEMBL)
MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE**********LAHNFLYSGDRKYIEKHIRPAPAIITTRQ***************************************KITRRMNSILD***********KELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP*************KAPRFFAIVH
Disordered Region (DISPRO)
*QNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFFAIVH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFFAIVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
A2ASS6	35213	Titin OS=Mus musculus GN=	yes	N/A	0.834	0.008	0.269	4e-21
Q6PDN3	1941	Myosin light chain kinase	no	N/A	0.418	0.076	0.317	2e-19
Q8WZ42	34350	Titin OS=Homo sapiens GN=	yes	N/A	0.834	0.008	0.260	2e-19
O01761	8081	Muscle M-line assembly pr	no	N/A	0.938	0.041	0.260	2e-18
Q23551	7158	Twitchin OS=Caenorhabditi	no	N/A	0.592	0.029	0.268	5e-17
Q15746	1914	Myosin light chain kinase	no	N/A	0.387	0.072	0.295	1e-15
P11799	1906	Myosin light chain kinase	no	N/A	0.441	0.082	0.272	6e-15
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.803	0.050	0.244	3e-13
Q8WX93	1383	Palladin OS=Homo sapiens	no	N/A	0.674	0.173	0.25	5e-13
Q28824	1176	Myosin light chain kinase	no	N/A	0.266	0.080	0.375	5e-13

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 158/364 (43%), Gaps = 67/364 (18%)

Query: 14   PPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
            PP  VKW+KG+REL S    ++S  D V  +E+++ +P  SG+Y C+ TN  G+   +C 
Sbjct: 7749 PPFKVKWFKGSRELVSGEACTISLEDFVTELELLEVEPGQSGDYSCLVTNDAGS--ASCT 7806

Query: 73   VIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYS-SHTDDTGRT 131
              +  +E +   + LA   + +G    +E      P I  +   +K+ Y  S + + G T
Sbjct: 7807 THLFVKEPATFVKRLADTSVETGSPIVLEATYSGTPPISVSW--MKNEYPLSQSPNCGIT 7864

Query: 132  TTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQ 191
            TT+ S++     S+  +          +   +++ ++    +   + L+    + + PP 
Sbjct: 7865 TTEKSSILEILESTIEDYA--------QYACLIENEA---GQDICEALV----SVLEPPY 7909

Query: 192  FANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQE 251
            F   L       G+ + L   V G PE R+SW K    L S+    +++KN VASL I +
Sbjct: 7910 FIEPLEHVEAAIGEPITLQCKVDGTPEIRISWYKEHTKLRSAPAYKMQFKNNVASLVINK 7969

Query: 252  VFPEDEGVYVCTATNSLGTAETKC-------KLTP----------------------LNS 282
            V   D G Y C A NS+G   +         KL P                      +N 
Sbjct: 7970 VDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRING 8029

Query: 283  SNILDLK-YKNG----------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKC 325
            S  L +  YK+G                VA+LQI +      G Y C+A+N LGTA +  
Sbjct: 8030 SEPLQVSWYKDGELLKDDANLQMSFVHHVATLQILQTDQSHVGQYNCSASNPLGTASSSA 8089

Query: 326  KLTV 329
            KL +
Sbjct: 8090 KLIL 8093

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q6PDN3|MYLK_MOUSE Myosin light chain kinase, smooth muscle OS=Mus musculus GN=Mylk PE=1 SV=3

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 89/214 (41%), Gaps = 65/214 (30%)

Query: 179 LIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL 238
           L+  P+ A T P F++ L D  + +GQ   L   V+G P PRV+W  NGQP+  ++ +  
Sbjct: 491 LVDRPNLAQTAPSFSSVLKDSVVIEGQDFVLRCSVQGTPAPRVTWLLNGQPIQFAHSI-- 548

Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT---------------AETKCKLTPLNSS 283
             + GVA L IQ+  PED G Y C A N++G                 E + +L+P  S 
Sbjct: 549 -CEAGVAELHIQDALPEDRGTYTCLAENAMGQVSCSATVTVQEKKGEGEREHRLSPARSK 607

Query: 284 NIL--------DLKY---------------------------------------KNGVAS 296
            I         DLK                                        K G  S
Sbjct: 608 PIAPIFLQGLSDLKVMDGSQVTMTVQVSGNPPPEVIWLHDGNEIQESEDFHFEQKGGWHS 667

Query: 297 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
           L IQEVFPED G Y C A NS G   T+  LTV+
Sbjct: 668 LCIQEVFPEDTGTYTCEAWNSAGEVRTRAVLTVQ 701

Calcium/calmodulin-dependent myosin light chain kinase implicated in smooth muscle contraction via phosphorylation of myosin light chains (MLC). Also regulates actin-myosin interaction through a non-kinase activty. Phosphorylates PTK2B/PYK2 and myosin light-chains. Involved in the inflammatory response (e.g. apoptosis, vascular permeability, leukocyte diapedesis), cell motility and morphology, airway hyperreactivity and other activities relevant to asthma. Required for tonic airway smooth muscle contraction that is necessary for physiological and asthmatic airway resistance. Necessary for gastrointestinal motility. Implicated in the regulation of endothelial as well as vascular permeability, probably via the regulation of cytoskeletal rearrangements. In the nervous system it has been shown to control the growth initiation of astrocytic processes in culture and to participate in transmitter release at synapses formed between cultured sympathetic ganglion cells. Critical participant in signaling sequences that result in fibroblast apoptosis. Plays a role in the regulation of epithelial cell survival. Required for epithelial wound healing, especially during actomyosin ring contraction during purse-string wound closure. Mediates RhoA-dependent membrane blebbing. Triggers TRPC5 channel activity in a calcium-dependent signaling, by inducing its subcellular localization at the plasma membrane. Promotes cell migration (including tumor cells) and tumor metastasis. PTK2B/PYK2 activation by phosphorylation mediates ITGB2 activation and is thus essential to trigger neutrophil transmigration during acute lung injury (ALI). May regulate optic nerve head astrocyte migration. Probably involved in mitotic cytoskeletal regulation. Regulates tight junction probably by modulating ZO-1 exchange in the perijunctional actomyosin ring. Mediates burn-induced microvascular barrier injury; triggers endothelial contraction in the development of microvascular hyperpermeability by phosphorylating MLC. Essential for intestinal barrier dysfunction. Mediates Giardia spp.-mediated reduced epithelial barrier function during giardiasis intestinal infection via reorganization of cytoskeletal F-actin and tight junctional ZO-1. Necessary for hypotonicity-induced Ca(2+) entry and subsequent activation of volume-sensitive organic osmolyte/anion channels (VSOAC) in cervical cancer cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 154/364 (42%), Gaps = 67/364 (18%)

Query: 14   PPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
            PP  VKW+KG+REL   +  ++S  D V  +E+ + +P +SG+Y C+ TN  G+   +C 
Sbjct: 7788 PPFKVKWFKGSRELVPGESCNISLEDFVTELELFEVQPLESGDYSCLVTNDAGS--ASCT 7845

Query: 73   VIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSY-SSHTDDTGRT 131
              +  +E +   + LA   + +G    +E      P I  +   IK  Y  S ++    T
Sbjct: 7846 THLFVKEPATFVKRLADFSVETGSPIVLEATYTGTPPISVSW--IKDEYLISQSERCSIT 7903

Query: 132  TTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQ 191
             T+ ST+     S+  +          + + +++ ++    +   + L+    + + PP 
Sbjct: 7904 MTEKSTILEILESTIEDYA--------QYSCLIENEA---GQDICEALV----SVLEPPY 7948

Query: 192  FANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQE 251
            F   L       G+   L   V G PE R+SW K    L S+    +++KN VASL I +
Sbjct: 7949 FIEPLEHVEAVIGEPATLQCKVDGTPEIRISWYKEHTKLRSAPAYKMQFKNNVASLVINK 8008

Query: 252  VFPEDEGVYVCTATNSLGTAETKC-------KLTPLNSSNILDLK--------------- 289
            V   D G Y C A NS+G   +         KL P  +  + D+                
Sbjct: 8009 VDHSDVGEYSCKADNSVGAVASSAVLVIKARKLPPFFARKLKDVHETLGFPVAFECRING 8068

Query: 290  --------YKNG----------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKC 325
                    YK+G                VA+LQI +      G Y C+A+N LGTA +  
Sbjct: 8069 SEPLQVSWYKDGVLLKDDANLQTSFVHNVATLQILQTDQSHIGQYNCSASNPLGTASSSA 8128

Query: 326  KLTV 329
            KL +
Sbjct: 8129 KLIL 8132

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 166/414 (40%), Gaps = 80/414 (19%)

Query: 14   PPPTVKWYKGNREL-SKRDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
            P  +V WYK    L +    S+ Y  DG  ++ I D   ED G Y+CVATN HGT  T+C
Sbjct: 5410 PRASVVWYKDGLPLRADSRTSIQYEEDGTATLAINDSTEEDIGAYRCVATNAHGTINTSC 5469

Query: 72   VVIVE--SEEESKEQQE------LAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSS 123
             V V+   +E  KE +E      L   +   GD   ++  +   P       EIK   + 
Sbjct: 5470 SVNVKVPKQEVKKEGEEPFFTKGLVDLWADRGDSFTLKCAVTGDPF-----PEIKWYRNG 5524

Query: 124  HTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR----RMNSILDTDSPSRSRSTTKEL 179
                 G  T   ++   + S + N +T   + I R      +    T + +  +    + 
Sbjct: 5525 QLLRNGPRTVIETSPDGSCSLTVNESTMSDEGIYRCEAENAHGKAKTQATAHVQMALGKT 5584

Query: 180  IMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL- 238
              P      PP+F  +L+D ++  G  +DL   V G P P V W+K+G PL   +  +  
Sbjct: 5585 EKPKMDEGKPPKFILELSDMSVSLGNVIDLECKVTGLPNPSVKWSKDGGPLIEDSRFEWS 5644

Query: 239  -KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK----------------------- 274
             +   GV  L+I+     DEG Y C ATN  G+A TK                       
Sbjct: 5645 NEASKGVYQLRIKNATVHDEGTYRCVATNENGSATTKSFVRMDDGLGSGVVTASQPPRFT 5704

Query: 275  CKLTPLNSSNILDLK---------------YKNG-----------------VASLQIQEV 302
             K+  + ++    LK               YK+G                 VA+L I   
Sbjct: 5705 LKMGDVRTTEGQPLKLECKVDASPLPEMVWYKDGAIVTPSDRIQISLSPDGVATLLIPSC 5764

Query: 303  FPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSK----ESDKAPRFF 352
              +D+G+Y   ATN  GTA+ K   TV+  P  +  +  +     +++KAP+  
Sbjct: 5765 VYDDDGIYRVIATNPSGTAQDKGTATVKKLPRDSGARRSADRDVFDANKAPKLM 5818

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 113/272 (41%), Gaps = 61/272 (22%)

Query: 14   PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
            P PT++W K    + +    +S+  GV S+EI + + +D+G Y   ATN  G D + CV+
Sbjct: 6735 PNPTIEWMKDGHPVDEDRVQVSFRSGVCSLEIFNARVDDAGTYTVTATNDLGVDVSECVL 6794

Query: 74   IVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTT 133
             V++                        K   P P + + R   + +Y +          
Sbjct: 6795 TVQT------------------------KGGEPIPRVSSFRP--RRAYDT---------- 6818

Query: 134  QMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRS------TTKELIMPPDTAM 187
                     S+ T+   S S    RR + I D     RS +       T EL        
Sbjct: 6819 --------LSTGTDVERSHSYADMRRRSLIRDVSPDVRSAADDLKTKITNEL-------- 6862

Query: 188  TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVAS 246
              P F  +L+D   + G   + SA V G PEP + W  NG+ ++ S+      Y  G A+
Sbjct: 6863 --PSFTAQLSDSETEVGGSAEFSAAVSGQPEPLIEWLHNGERISESDSRFRASYVAGKAT 6920

Query: 247  LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            L+I +    DEG Y+C A+NS G  +T+  LT
Sbjct: 6921 LRISDAKKSDEGQYLCRASNSAGQEQTRATLT 6952

Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q15746|MYLK_HUMAN Myosin light chain kinase, smooth muscle OS=Homo sapiens GN=MYLK PE=1 SV=4

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 78/203 (38%), Gaps = 65/203 (32%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
           P F++ L D  + +GQ   L   V+G P PR++W  NGQP+  +       + GVA L I
Sbjct: 514 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAELHI 570

Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT-----------------------PLNSSNIL 286
           Q+  PED G Y C A N+LG       +T                       P+    + 
Sbjct: 571 QDALPEDHGTYTCLAENALGQVSCSAWVTVHEKKSSRKSEYLLPVAPSKPTAPIFLQGLS 630

Query: 287 DLKYKNGVA---------------------------------------SLQIQEVFPEDE 307
           DLK  +G                                         SL IQEVFPED 
Sbjct: 631 DLKVMDGSQVTMTVQVSGNPPPEVIWLHNGNEIQESEDFHFEQRGTQHSLCIQEVFPEDT 690

Query: 308 GVYVCTATNSLGTAETKCKLTVR 330
           G Y C A NS G   T+  LTV+
Sbjct: 691 GTYTCEAWNSAGEVRTQAVLTVQ 713

Calcium/calmodulin-dependent myosin light chain kinase implicated in smooth muscle contraction via phosphorylation of myosin light chains (MLC). Also regulates actin-myosin interaction through a non-kinase activty. Phosphorylates PTK2B/PYK2 and myosin light-chains. Involved in the inflammatory response (e.g. apoptosis, vascular permeability, leukocyte diapedesis), cell motility and morphology, airway hyperreactivity and other activities relevant to asthma. Required for tonic airway smooth muscle contraction that is necessary for physiological and asthmatic airway resistance. Necessary for gastrointestinal motility. Implicated in the regulation of endothelial as well as vascular permeability, probably via the regulation of cytoskeletal rearrangements. In the nervous system it has been shown to control the growth initiation of astrocytic processes in culture and to participate in transmitter release at synapses formed between cultured sympathetic ganglion cells. Critical participant in signaling sequences that result in fibroblast apoptosis. Plays a role in the regulation of epithelial cell survival. Required for epithelial wound healing, especially during actomyosin ring contraction during purse-string wound closure. Mediates RhoA-dependent membrane blebbing. Triggers TRPC5 channel activity in a calcium-dependent signaling, by inducing its subcellular localization at the plasma membrane. Promotes cell migration (including tumor cells) and tumor metastasis. PTK2B/PYK2 activation by phosphorylation mediates ITGB2 activation and is thus essential to trigger neutrophil transmigration during acute lung injury (ALI). May regulate optic nerve head astrocyte migration. Probably involved in mitotic cytoskeletal regulation. Regulates tight junction probably by modulating ZO-1 exchange in the perijunctional actomyosin ring. Mediates burn-induced microvascular barrier injury; triggers endothelial contraction in the development of microvascular hyperpermeability by phosphorylating MLC. Essential for intestinal barrier dysfunction. Mediates Giardia spp.-mediated reduced epithelial barrier function during giardiasis intestinal infection via reorganization of cytoskeletal F-actin and tight junctional ZO-1. Necessary for hypotonicity-induced Ca(2+) entry and subsequent activation of volume-sensitive organic osmolyte/anion channels (VSOAC) in cervical cancer cells. Responsible for high proliferative ability of breast cancer cells through anti-apoptosis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 8

>sp|P11799|MYLK_CHICK Myosin light chain kinase, smooth muscle OS=Gallus gallus PE=1 SV=2

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 89/224 (39%), Gaps = 67/224 (29%)

Query: 171 RSRSTTKEL--IMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ 228
           R +++T  L  +  P      P F++ L   T+ +GQ   L   V G P P ++W  N Q
Sbjct: 507 RGQTSTSWLLTVKRPKVEEVAPCFSSVLKGCTVSEGQDFVLQCYVGGVPVPEITWLLNEQ 566

Query: 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------- 278
           P+  ++     ++ GVA L +Q+  PED+G+Y C A N+ G A    ++T          
Sbjct: 567 PIQYAHST---FEAGVAKLTVQDALPEDDGIYTCLAENNAGRASCSAQVTVKEKKSSKKA 623

Query: 279 -------------PLNSSNILDLKYKNGVA------------------------------ 295
                        P+    + DLK  +G                                
Sbjct: 624 EGTQAAKLNKTFAPIFLKGLTDLKVMDGSQVIMTVEVSANPCPEIIWLHNGKEIQETEDF 683

Query: 296 ---------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
                    SL IQEVFPED G Y C A N LG  +T+  LTV+
Sbjct: 684 HFEKKGNEYSLYIQEVFPEDTGKYTCEAWNELGETQTQATLTVQ 727

Phosphorylates a specific serine in the N-terminus of a myosin light chain, which leads to the formation of calmodulin/MLCK signal transduction complexes which allow selective transduction of calcium signals.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 140/377 (37%), Gaps = 91/377 (24%)

Query: 14   PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
            PPP + W+K  R + +       S G  S++I   +P D+G Y C+A N  G+  T+  +
Sbjct: 4106 PPPDITWHKDGRAIVESIRQRVLSSG--SLQIAFVQPGDAGHYTCMAANVAGSSSTSTKL 4163

Query: 74   IVESEEESKEQQELAHNFLYSGDRKYIEKHIR---PAPAIITTRQEIK-----SSYSSHT 125
             V      +  +    ++  + + + I   +    P PAI   +  +        Y++  
Sbjct: 4164 TVHVPPRIRSTE---GHYTVNENSQAILPCVADGIPTPAINWKKDNVLLANLLGKYTA-- 4218

Query: 126  DDTGRTTTQMSTL--SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPP 183
            +  G    +   L  S  Y+   NNA               DT + S             
Sbjct: 4219 EPYGELILENVVLEDSGFYTCVANNAAGE------------DTHTVSL------------ 4254

Query: 184  DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK-- 241
             T    P F     D +++ G+ L LS    G P P+++WT N      +NI+   +   
Sbjct: 4255 -TVHVLPTFTELPGDVSLNKGEQLRLSCKATGIPLPKLTWTFN------NNIIPAHFDSV 4307

Query: 242  NGVASLQIQEVFPEDEGVYVCTATNSLGTAET-----------------KCKLTPLNSSN 284
            NG + L I+ V  ED G YVCTA NS+G  +                     + PL  + 
Sbjct: 4308 NGHSELVIERVSKEDSGTYVCTAENSVGFVKAIGFVYVKEPPVFKGDYPSNWIEPLGGNA 4367

Query: 285  ILDLKYKN------------------------GVASLQIQEVFPEDEGVYVCTATNSLGT 320
            IL+ + K                         G  SL I     ED G Y C ATN  G 
Sbjct: 4368 ILNCEVKGDPTPTIQWNRKGVDIEISHRIRQLGNGSLAIYGTVNEDAGDYTCVATNEAGV 4427

Query: 321  AETKCKLTVRSTPAANL 337
             E    LT++S P   L
Sbjct: 4428 VERSMSLTLQSPPIITL 4444

Homo sapiens (taxid: 9606)

>sp|Q8WX93|PALLD_HUMAN Palladin OS=Homo sapiens GN=PALLD PE=1 SV=3

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 121/292 (41%), Gaps = 52/292 (17%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDG--VVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
           P P V+W+   +EL        + +G  + ++ I +   +D+G Y C+ATN  G+D T+ 
Sbjct: 298 PTPRVRWFCEGKELHNTPDIQIHCEGGDLHTLIIAEAFEDDTGRYTCLATNPSGSDTTSA 357

Query: 72  VVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRT 131
            V +E    +    E       +G     +K         TT   +  +  S +  TG T
Sbjct: 358 EVFIEGASSTDSDSESLAFKSRAGAMPQAQKK--------TT--SVSLTIGSSSPKTGVT 407

Query: 132 TTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD---TAMT 188
           T  +  LS           SP+  + R                        PD   TA  
Sbjct: 408 TAVIQPLSV----PVQQVHSPTSYLCR------------------------PDGTTTAYF 439

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS---NILDLKYKNG-- 243
           PP F  +L +  + +GQ + L   V+G P  +V W + G  +  S    IL  K ++   
Sbjct: 440 PPVFTKELQNTAVAEGQVVVLECRVRGAPPLQVQWFRQGSEIQDSPDFRILQKKPRSTAE 499

Query: 244 ---VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKN 292
              + +L I E FPED G++ C+A N  G+A +  +L  + S+N  +  Y++
Sbjct: 500 PEEICTLVIAETFPEDAGIFTCSARNDYGSATSTAQLV-VTSANTENCSYES 550

Cytoskeletal protein required for organization of normal actin cytoskeleton. Roles in establishing cell morphology, motility, cell adhesion and cell-extracellular matrix interactions in a variety of cell types. May function as a scaffolding molecule with the potential to influence both actin polymerization and the assembly of existing actin filaments into higher-order arrays. Binds to proteins that bind to either monomeric or filamentous actin. Localizes at sites where active actin remodeling takes place, such as lamellipodia and membrane ruffles. Different isoforms may have functional differences. Involved in the control of morphological and cytoskeletal changes associated with dendritic cell maturation. Involved in targeting ACTN to specific subcellular foci.

Homo sapiens (taxid: 9606)

>sp|Q28824|MYLK_BOVIN Myosin light chain kinase, smooth muscle OS=Bos taurus GN=MYLK PE=1 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 55/96 (57%)

Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN 242
           P++  T P F  KL D  + +GQ L L   V  DP   ++WT NG+ L ++  + L  + 
Sbjct: 349 PESRGTAPTFEEKLQDLHVAEGQKLLLQCRVSSDPPATITWTLNGKTLKTTKFIVLSQEG 408

Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            + S+ I++  PED G+Y C A NS G AE+ C++T
Sbjct: 409 SLCSVSIEKALPEDRGLYKCVAKNSAGQAESSCQVT 444

Calcium/calmodulin-dependent myosin light chain kinase implicated in smooth muscle contraction via phosphorylation of myosin light chains (MLC). Also regulates actin-myosin interaction through a non-kinase activty. Phosphorylates PTK2B/PYK2 and myosin light-chains. Involved in the inflammatory response (e.g. apoptosis, vascular permeability, leukocyte diapedesis), cell motility and morphology, airway hyperreactivity and other activities relevant to asthma. Required for tonic airway smooth muscle contraction that is necessary for physiological and asthmatic airway resistance. Necessary for gastrointestinal motility. Implicated in the regulation of endothelial as well as vascular permeability, probably via the regulation of cytoskeletal rearrangements. In the nervous system it has been shown to control the growth initiation of astrocytic processes in culture and to participate in transmitter release at synapses formed between cultured sympathetic ganglion cells. Critical participant in signaling sequences that result in fibroblast apoptosis. Plays a role in the regulation of epithelial cell survival. Required for epithelial wound healing, especially during actomyosin ring contraction during purse-string wound closure. Mediates RhoA-dependent membrane blebbing. Triggers TRPC5 channel activity in a calcium-dependent signaling, by inducing its subcellular localization at the plasma membrane. Promotes cell migration (including tumor cells) and tumor metastasis. PTK2B/PYK2 activation by phosphorylation mediates ITGB2 activation and is thus essential to trigger neutrophil transmigration during acute lung injury (ALI). May regulate optic nerve head astrocyte migration. Probably involved in mitotic cytoskeletal regulation. Regulates tight junction probably by modulating ZO-1 exchange in the perijunctional actomyosin ring. Mediates burn-induced microvascular barrier injury; triggers endothelial contraction in the development of microvascular hyperpermeability by phosphorylating MLC. Essential for intestinal barrier dysfunction. Mediates Giardia spp.-mediated reduced epithelial barrier function during giardiasis intestinal infection via reorganization of cytoskeletal F-actin and tight junctional ZO-1. Necessary for hypotonicity-induced Ca(2+) entry and subsequent activation of volume-sensitive organic osmolyte/anion channels (VSOAC) in cervical cancer cells.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
328710146	8645	PREDICTED: twitchin-like [Acyrthosiphon	0.887	0.036	0.442	3e-83
45552151	8648	bent, isoform C [Drosophila melanogaster	0.867	0.035	0.472	2e-82
442614471	8866	bent, isoform I [Drosophila melanogaster	0.867	0.034	0.472	2e-82
380026625	8679	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.893	0.036	0.465	3e-82
281359561	8933	bent, isoform F [Drosophila melanogaster	0.867	0.034	0.472	3e-82
3337431	6658	projectin [Drosophila melanogaster]	0.867	0.046	0.472	4e-82
340710318	8715	PREDICTED: twitchin-like [Bombus terrest	0.862	0.035	0.458	7e-81
307200525	5935	Titin [Harpegnathos saltator]	0.896	0.053	0.451	9e-81
263359660	8965	hypothetical protein DVIR88_6g0033 [Dros	0.890	0.035	0.482	9e-81
195402301	8965	GJ15760 [Drosophila virilis] gi|19415595	0.890	0.035	0.482	9e-81

>gi|328710146|ref|XP_003244179.1| PREDICTED: twitchin-like [Acyrthosiphon pisum]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 166/375 (44%), Positives = 232/375 (61%), Gaps = 59/375 (15%)

Query: 11   STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            S  P PT++W++G +EL+KRDY+++++DGV+++EIIDCKPEDSG+Y+CVATN HGTDET+
Sbjct: 8169 SGTPIPTIQWFRGTKELTKRDYTITHTDGVITLEIIDCKPEDSGKYRCVATNVHGTDETS 8228

Query: 71   CVVIVESEEESKEQQELAHNFLYSGDRKYIEKH-IRPAPAIITTRQEIKSSYSSHTDDTG 129
            CVVIVE  E+S+EQ EL+HN L+S DR+Y+++H  RPAP +IT R  I S+   H   + 
Sbjct: 8229 CVVIVEGIEQSQEQAELSHNLLHS-DRRYVDQHHFRPAPTVITKRTAITSNV--HGSSSV 8285

Query: 130  RTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTP 189
             +   ++T +S   S T   ++  K + +  N +    SPSRSRS+TKEL + PD AM P
Sbjct: 8286 SSNQSITTNTSTKISDTTVTSTDRKSVKKYGNKLNAVGSPSRSRSSTKELRLSPDEAMCP 8345

Query: 190  PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
            P F+ +L D +++DGQ L+LS  V GDPEP+++W KNG+ ++SSN+LDLKYKN +A+L+I
Sbjct: 8346 PDFSTRLLDTSVNDGQSLELSCKVTGDPEPQITWLKNGKAISSSNVLDLKYKNRLATLKI 8405

Query: 250  QEVFPEDEGVYVCTATNSLGTAETKCKLT----------------PLNSSNIL------- 286
             EVFPED G Y+C ATNSLGT E+ CKLT                P+ +S++        
Sbjct: 8406 NEVFPEDAGEYICKATNSLGTKESSCKLTVKAVDVSKNKSRNDSPPVIASHLTSATVTDG 8465

Query: 287  ------------------------------DLKYKN--GVASLQIQEVFPEDEGVYVCTA 314
                                          D  Y N   V +L+I E+FPED G Y C A
Sbjct: 8466 DAVTLQCQIIGANKFDVVWLHNHKEIKPSKDFDYANVANVYTLKIAEIFPEDSGTYTCEA 8525

Query: 315  TNSLGTAETKCKLTV 329
             N  G A + C + V
Sbjct: 8526 FNDAGEAFSSCSIFV 8540

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552151|ref|NP_995598.1| bent, isoform C [Drosophila melanogaster] gi|45444797|gb|AAS64600.1| bent, isoform C [Drosophila melanogaster]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/379 (47%), Positives = 226/379 (59%), Gaps = 70/379 (18%)

Query: 11   STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            S KP P V+WYK  RELSK +Y+M++SDGVV+MEIIDCKP DSG+Y C ATN HGTDET+
Sbjct: 8176 SGKPVPNVRWYKDGRELSKYEYAMTHSDGVVTMEIIDCKPSDSGKYSCKATNCHGTDETD 8235

Query: 71   CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAP-AIITTRQEIKSSYSSHTDDTG 129
            CVVIVE E  + EQ +LAHNFLYSGDRKYIE+ I+PAP  I+T+RQ   SS  + ++  G
Sbjct: 8236 CVVIVEGEWVTPEQAQLAHNFLYSGDRKYIEQPIKPAPLPIVTSRQYTSSSVQNTSEPQG 8295

Query: 130  RTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD-TAMT 188
                  ++ SS  S+    A+          NS+    SPSRSRS TKELI+PPD + M 
Sbjct: 8296 DKVNVSNSNSSGISNKKKYAS----------NSLQAPGSPSRSRSATKELILPPDDSLMC 8345

Query: 189  PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
             P+F   L D TI DG+ L L+  VKGDPEP++SW+KNG+ L+SS+ILDL+YKNG+A+L 
Sbjct: 8346 KPEFTKPLHDLTIHDGEQLILTCYVKGDPEPQISWSKNGKSLSSSDILDLRYKNGIATLT 8405

Query: 249  IQEVFPEDEGVYVCTATNSLGTAETKCK--LTPL-------------NSSNIL------- 286
            I EVFPEDEGV  CTATNS+G  ETKCK  + PL             N+  I+       
Sbjct: 8406 INEVFPEDEGVITCTATNSVGAVETKCKLTIQPLDKNINKRKVNAGDNAPKIVSHLESRF 8465

Query: 287  ----------------------------------DLKYKN--GVASLQIQEVFPEDEGVY 310
                                              D +Y N   +  LQI E+FPED G Y
Sbjct: 8466 VRDGDAVNLACRIIGAQHFDVVWLHNNKEIKPSKDFQYTNEANIYRLQIAEIFPEDGGTY 8525

Query: 311  VCTATNSLGTAETKCKLTV 329
             C A N +G + + C + V
Sbjct: 8526 TCEAFNDIGESFSTCTINV 8544

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442614471|ref|NP_001259072.1| bent, isoform I [Drosophila melanogaster] gi|440218161|gb|AGB96562.1| bent, isoform I [Drosophila melanogaster]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/379 (47%), Positives = 226/379 (59%), Gaps = 70/379 (18%)

Query: 11   STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            S KP P V+WYK  RELSK +Y+M++SDGVV+MEIIDCKP DSG+Y C ATN HGTDET+
Sbjct: 8394 SGKPVPNVRWYKDGRELSKYEYAMTHSDGVVTMEIIDCKPSDSGKYSCKATNCHGTDETD 8453

Query: 71   CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAP-AIITTRQEIKSSYSSHTDDTG 129
            CVVIVE E  + EQ +LAHNFLYSGDRKYIE+ I+PAP  I+T+RQ   SS  + ++  G
Sbjct: 8454 CVVIVEGEWVTPEQAQLAHNFLYSGDRKYIEQPIKPAPLPIVTSRQYTSSSVQNTSEPQG 8513

Query: 130  RTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD-TAMT 188
                  ++ SS  S+    A+          NS+    SPSRSRS TKELI+PPD + M 
Sbjct: 8514 DKVNVSNSNSSGISNKKKYAS----------NSLQAPGSPSRSRSATKELILPPDDSLMC 8563

Query: 189  PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
             P+F   L D TI DG+ L L+  VKGDPEP++SW+KNG+ L+SS+ILDL+YKNG+A+L 
Sbjct: 8564 KPEFTKPLHDLTIHDGEQLILTCYVKGDPEPQISWSKNGKSLSSSDILDLRYKNGIATLT 8623

Query: 249  IQEVFPEDEGVYVCTATNSLGTAETKCK--LTPL-------------NSSNIL------- 286
            I EVFPEDEGV  CTATNS+G  ETKCK  + PL             N+  I+       
Sbjct: 8624 INEVFPEDEGVITCTATNSVGAVETKCKLTIQPLDKNINKRKVNAGDNAPKIVSHLESRF 8683

Query: 287  ----------------------------------DLKYKN--GVASLQIQEVFPEDEGVY 310
                                              D +Y N   +  LQI E+FPED G Y
Sbjct: 8684 VRDGDAVNLACRIIGAQHFDVVWLHNNKEIKPSKDFQYTNEANIYRLQIAEIFPEDGGTY 8743

Query: 311  VCTATNSLGTAETKCKLTV 329
             C A N +G + + C + V
Sbjct: 8744 TCEAFNDIGESFSTCTINV 8762

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026625|ref|XP_003697047.1| PREDICTED: LOW QUALITY PROTEIN: twitchin-like [Apis florea]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 175/376 (46%), Positives = 226/376 (60%), Gaps = 58/376 (15%)

Query: 11   STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            S  PPPTVKWYK   ELSK  Y M+++DGVV+MEIIDCKPEDSG+Y+CVATN HG DET+
Sbjct: 8200 SGNPPPTVKWYKDREELSKYHYPMTHADGVVTMEIIDCKPEDSGKYRCVATNIHGKDETS 8259

Query: 71   CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGR 130
            CVVIVE   E++EQ +LAH+ L+SGDRK+IE+ ++PAP  I T  +    YS ++  T +
Sbjct: 8260 CVVIVEGTGETEEQVKLAHDLLHSGDRKFIEQPLKPAPPPIVTVHK-AGGYSGYSSTTTQ 8318

Query: 131  TTTQMSTLSSNYSSSTNNAT-SPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTP 189
                 S+ + N S+S+  AT S ++K + +   +  T SPSRSRSTTKELI PPD +M  
Sbjct: 8319 GYNYSSSSAKNTSTSSYKATESSTEKRSVKKYGLDSTGSPSRSRSTTKELIYPPDESMRA 8378

Query: 190  PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
            P+F  KL D TI+DG+ L+LS  V GDPEP+V+W+KNG+ L+SS I+ LKYK GVA+L I
Sbjct: 8379 PKFTKKLNDLTINDGEQLELSVNVDGDPEPQVTWSKNGKTLSSSGIMSLKYKGGVATLVI 8438

Query: 250  QEVFPEDEGVYVCTATNSLGTAETKCKLT--PLNSSN-----------ILD--------- 287
             EVFPEDEG Y C A+NS+GT  T CKLT  P+ S +           I+D         
Sbjct: 8439 NEVFPEDEGEYACQASNSIGTVTTSCKLTVKPMTSGSSKKKTDDKPPKIVDHVSSMFVKD 8498

Query: 288  --------------------------------LKYKN--GVASLQIQEVFPEDEGVYVCT 313
                                             +Y N   +  L I E+FPED G Y C 
Sbjct: 8499 GEPVTLSCRIIGAKKFDVVWLHNNKEIKPSKDFQYSNEANIYKLNIAEIFPEDSGTYTCE 8558

Query: 314  ATNSLGTAETKCKLTV 329
            A N  G + + C L V
Sbjct: 8559 AFNDAGESFSSCTLNV 8574

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281359561|ref|NP_001162825.1| bent, isoform F [Drosophila melanogaster] gi|272482441|gb|ACZ95094.1| bent, isoform F [Drosophila melanogaster]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 179/379 (47%), Positives = 226/379 (59%), Gaps = 70/379 (18%)

Query: 11   STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            S KP P V+WYK  RELSK +Y+M++SDGVV+MEIIDCKP DSG+Y C ATN HGTDET+
Sbjct: 8461 SGKPVPNVRWYKDGRELSKYEYAMTHSDGVVTMEIIDCKPSDSGKYSCKATNCHGTDETD 8520

Query: 71   CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAP-AIITTRQEIKSSYSSHTDDTG 129
            CVVIVE E  + EQ +LAHNFLYSGDRKYIE+ I+PAP  I+T+RQ   SS  + ++  G
Sbjct: 8521 CVVIVEGEWVTPEQAQLAHNFLYSGDRKYIEQPIKPAPLPIVTSRQYTSSSVQNTSEPQG 8580

Query: 130  RTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD-TAMT 188
                  ++ SS  S+    A+          NS+    SPSRSRS TKELI+PPD + M 
Sbjct: 8581 DKVNVSNSNSSGISNKKKYAS----------NSLQAPGSPSRSRSATKELILPPDDSLMC 8630

Query: 189  PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
             P+F   L D TI DG+ L L+  VKGDPEP++SW+KNG+ L+SS+ILDL+YKNG+A+L 
Sbjct: 8631 KPEFTKPLHDLTIHDGEQLILTCYVKGDPEPQISWSKNGKSLSSSDILDLRYKNGIATLT 8690

Query: 249  IQEVFPEDEGVYVCTATNSLGTAETKCK--LTPL-------------NSSNIL------- 286
            I EVFPEDEGV  CTATNS+G  ETKCK  + PL             N+  I+       
Sbjct: 8691 INEVFPEDEGVITCTATNSVGAVETKCKLTIQPLDKNINKRKVNAGDNAPKIVSHLESRF 8750

Query: 287  ----------------------------------DLKYKN--GVASLQIQEVFPEDEGVY 310
                                              D +Y N   +  LQI E+FPED G Y
Sbjct: 8751 VRDGDAVNLACRIIGAQHFDVVWLHNNKEIKPSKDFQYTNEANIYRLQIAEIFPEDGGTY 8810

Query: 311  VCTATNSLGTAETKCKLTV 329
             C A N +G + + C + V
Sbjct: 8811 TCEAFNDIGESFSTCTINV 8829

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3337431|gb|AAC27550.1| projectin [Drosophila melanogaster]

 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 179/379 (47%), Positives = 225/379 (59%), Gaps = 70/379 (18%)

Query: 11   STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            S KP P V+WYK  RELSK +Y+M++SDGVV+MEIIDCKP DSG Y C ATN HGTDET+
Sbjct: 6186 SGKPVPNVRWYKDGRELSKYEYAMTHSDGVVTMEIIDCKPSDSGNYSCKATNCHGTDETD 6245

Query: 71   CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAP-AIITTRQEIKSSYSSHTDDTG 129
            CVVIVE E  + EQ +LAHNFLYSGDRKYIE+ I+PAP  I+T+RQ   SS  + ++  G
Sbjct: 6246 CVVIVEGEWVTPEQAQLAHNFLYSGDRKYIEQPIKPAPLPIVTSRQYTSSSVQNTSEPQG 6305

Query: 130  RTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD-TAMT 188
                  ++ SS  S+    A+          NS+    SPSRSRS TKELI+PPD + M 
Sbjct: 6306 DKVNVSNSNSSGISNKKKYAS----------NSLQAPGSPSRSRSATKELILPPDDSLMC 6355

Query: 189  PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
             P+F   L D TI DG+ L L+  VKGDPEP++SW+KNG+ L+SS+ILDL+YKNG+A+L 
Sbjct: 6356 KPEFTKPLHDLTIHDGEQLILTCYVKGDPEPQISWSKNGKSLSSSDILDLRYKNGIATLT 6415

Query: 249  IQEVFPEDEGVYVCTATNSLGTAETKCK--LTPL-------------NSSNIL------- 286
            I EVFPEDEGV  CTATNS+G  ETKCK  + PL             N+  I+       
Sbjct: 6416 INEVFPEDEGVITCTATNSVGAVETKCKLTIQPLDKNINKRKVNAGDNAPKIVSHLESRF 6475

Query: 287  ----------------------------------DLKYKN--GVASLQIQEVFPEDEGVY 310
                                              D +Y N   +  LQI E+FPED G Y
Sbjct: 6476 VRDGDAVNLACRIIGAQHFDVVWLHNNKEIKPSKDFQYTNEANIYRLQIAEIFPEDGGTY 6535

Query: 311  VCTATNSLGTAETKCKLTV 329
             C A N +G + + C + V
Sbjct: 6536 TCEAFNDIGESFSTCTINV 6554

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710318|ref|XP_003393739.1| PREDICTED: twitchin-like [Bombus terrestris]

 Score =  306 bits (785), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 173/377 (45%), Positives = 222/377 (58%), Gaps = 70/377 (18%)

Query: 14   PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
            PPPTVKWYK   ELSK  Y+M+ SDGVV+MEIIDCKPEDSG+Y+C+ATNKHG DET+CVV
Sbjct: 8245 PPPTVKWYKDREELSKHHYAMTNSDGVVTMEIIDCKPEDSGKYRCIATNKHGKDETSCVV 8304

Query: 74   IVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTT 133
            IVE   E++EQ +LAH+ L+SGDRK+IE+ ++PAP  I T  +    YS ++     TTT
Sbjct: 8305 IVEGTGETEEQLKLAHDLLHSGDRKFIEQPLKPAPPPIITVHK-AGGYSGYSS----TTT 8359

Query: 134  QMSTLSSNYSSSTNN-----ATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMT 188
            Q      NYSSST N     ++S  KK   +   +  T SPSRSRSTTKELI PPD +M 
Sbjct: 8360 Q----GHNYSSSTTNKYNASSSSSYKKRNTKKYGLDSTGSPSRSRSTTKELIYPPDDSMR 8415

Query: 189  PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
             PQF  KL+D TI+DG+ L+L+  V GDPEP+V+W+KNG+ L+SS I+ LKYK GVA+L 
Sbjct: 8416 APQFTKKLSDLTINDGEQLELNVNVDGDPEPQVTWSKNGKTLSSSEIMSLKYKGGVATLV 8475

Query: 249  IQEVFPEDEGVYVCTATNSLGTAETK---------------------------------- 274
            I EVFPEDEG Y C A+NS+GT  T                                   
Sbjct: 8476 INEVFPEDEGEYTCQASNSIGTVTTSCKLTVKPMANAAAKKKTDDKPPKIVDHVTSMFVK 8535

Query: 275  --------CKLTPLNSSNIL------------DLKYKN--GVASLQIQEVFPEDEGVYVC 312
                    C++      +++            D +Y +   +  L I E+FPED G Y C
Sbjct: 8536 DGEAVTLSCRIIGAKKFDVIWLHNNKEIKPSKDFQYSSEANIYKLNIAEIFPEDSGTYTC 8595

Query: 313  TATNSLGTAETKCKLTV 329
             A N  G + + C L V
Sbjct: 8596 EAFNDAGESFSSCTLNV 8612

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200525|gb|EFN80687.1| Titin [Harpegnathos saltator]

 Score =  306 bits (784), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 172/381 (45%), Positives = 225/381 (59%), Gaps = 62/381 (16%)

Query: 11   STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            S  PPPTVKWYK   ELSK +Y MS +DGVV+MEIIDCKPEDSG+Y+CVA+NKHG DET+
Sbjct: 5449 SGNPPPTVKWYKDREELSKYNYPMSNADGVVTMEIIDCKPEDSGKYRCVASNKHGKDETS 5508

Query: 71   CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPA-IITTRQEIKSSYSSHTDDTG 129
            CVVIVE   E+ EQ +LAH+ L+SGDR++IE+ ++PAP  I+T  +    S  S T   G
Sbjct: 5509 CVVIVEGTGETAEQVKLAHDLLHSGDRRFIEQPLKPAPPPIVTIHKSSGYSGYSSTTSQG 5568

Query: 130  RTTTQ----MSTLSSNYSSSTNNATSPSKKITRRMNSILDT-DSPSRSRSTTKELIMPPD 184
            +T+      M + +S+       + S  K+  ++  S LDT  SPSRSRSTTKELI P D
Sbjct: 5569 QTSISSYNGMQSTTSSLQKDVKISESSDKRSIKKYGSKLDTTGSPSRSRSTTKELICPSD 5628

Query: 185  TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
             +M PPQF  KL + T++DG+ L+L+  V GDPEP+++W KNG+ L+SS I+DLKYKNGV
Sbjct: 5629 DSMRPPQFTEKLKNLTVNDGEQLELTVKVDGDPEPQITWNKNGKLLSSSEIIDLKYKNGV 5688

Query: 245  ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT-----------------PLNSSNILD 287
            A+L I EVFPEDEG Y C ATNS+G+  T CKLT                 P    +++ 
Sbjct: 5689 ATLTINEVFPEDEGQYTCLATNSIGSDTTSCKLTVKPVENASAKKKGDDKSPKIVDHLMS 5748

Query: 288  LKYKNG---------------------------------------VASLQIQEVFPEDEG 308
            +  K+G                                       +  L I E+FPED G
Sbjct: 5749 MYVKDGEAVTLSCRIIGAKKFDVIWLHNNKEIKPSKDFQYTNEANIYKLIIAEIFPEDSG 5808

Query: 309  VYVCTATNSLGTAETKCKLTV 329
             Y C A N  G + + C L+V
Sbjct: 5809 TYTCEAFNDAGESYSSCTLSV 5829

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|263359660|gb|ACY70496.1| hypothetical protein DVIR88_6g0033 [Drosophila virilis]

 Score =  306 bits (784), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 184/381 (48%), Positives = 233/381 (61%), Gaps = 64/381 (16%)

Query: 11   STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            S KP PTVKWYK  RELSK +Y+M++SDGVV+MEIIDCKP DSG+Y C ATN HGTDET+
Sbjct: 8483 SGKPVPTVKWYKDGRELSKYEYAMTHSDGVVTMEIIDCKPSDSGKYTCKATNCHGTDETS 8542

Query: 71   CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPA-IITTRQEIKSSYSSHTDDTG 129
            CVVIVE E  + EQ ELAHNFLYSGDRKYIE+H +P P  IITTRQ   S+ SS++  T 
Sbjct: 8543 CVVIVEGEWVTPEQAELAHNFLYSGDRKYIEQHFKPTPPPIITTRQFTSSATSSNSQQTS 8602

Query: 130  --RTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD-TA 186
              RTT+   T+ +N SSST N+ S  KK     +S+    SPSRSRS TKELI+PPD + 
Sbjct: 8603 STRTTSDGKTVITNSSSSTQNSISSKKKYA--ASSLQAPGSPSRSRSATKELILPPDDSL 8660

Query: 187  MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
            M  P+F   L D TI DG+ L L+  VKGDPEP+++W+KNG+ ++SS I+DLKYKNG+A+
Sbjct: 8661 MCKPEFTKPLHDLTISDGEQLLLTCHVKGDPEPQITWSKNGKSISSSEIMDLKYKNGIAT 8720

Query: 247  LQIQEVFPEDEGVYVCTATNSLGTAETK-------------------------------- 274
            L I EVFPEDEGV+ CTATNS+ + ETK                                
Sbjct: 8721 LTIHEVFPEDEGVFSCTATNSISSVETKCKLTIKPLDKQSSKRLPTGSDKPPKIVSHLES 8780

Query: 275  ------------CKLTPLNSSNIL------------DLKYKN--GVASLQIQEVFPEDEG 308
                        C++   +  +++            D +Y N   +  LQI E+FPED G
Sbjct: 8781 RFVKDGDAVTLACRIIGADHFDVVWLHNNKEIKPSKDFQYSNEANIYRLQIAEIFPEDGG 8840

Query: 309  VYVCTATNSLGTAETKCKLTV 329
             Y C A N  G + + C + V
Sbjct: 8841 TYTCEAFNDAGESFSTCTINV 8861

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195402301|ref|XP_002059745.1| GJ15760 [Drosophila virilis] gi|194155959|gb|EDW71143.1| GJ15760 [Drosophila virilis]

 Score =  306 bits (784), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 184/381 (48%), Positives = 233/381 (61%), Gaps = 64/381 (16%)

Query: 11   STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            S KP PTVKWYK  RELSK +Y+M++SDGVV+MEIIDCKP DSG+Y C ATN HGTDET+
Sbjct: 8483 SGKPVPTVKWYKDGRELSKYEYAMTHSDGVVTMEIIDCKPSDSGKYTCKATNCHGTDETS 8542

Query: 71   CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPA-IITTRQEIKSSYSSHTDDTG 129
            CVVIVE E  + EQ ELAHNFLYSGDRKYIE+H +P P  IITTRQ   S+ SS++  T 
Sbjct: 8543 CVVIVEGEWVTPEQAELAHNFLYSGDRKYIEQHFKPTPPPIITTRQFTSSATSSNSQQTS 8602

Query: 130  --RTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD-TA 186
              RTT+   T+ +N SSST N+ S  KK     +S+    SPSRSRS TKELI+PPD + 
Sbjct: 8603 STRTTSDGKTVITNSSSSTQNSISSKKKYA--ASSLQAPGSPSRSRSATKELILPPDDSL 8660

Query: 187  MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
            M  P+F   L D TI DG+ L L+  VKGDPEP+++W+KNG+ ++SS I+DLKYKNG+A+
Sbjct: 8661 MCKPEFTKPLHDLTISDGEQLLLTCHVKGDPEPQITWSKNGKSISSSEIMDLKYKNGIAT 8720

Query: 247  LQIQEVFPEDEGVYVCTATNSLGTAETK-------------------------------- 274
            L I EVFPEDEGV+ CTATNS+ + ETK                                
Sbjct: 8721 LTIHEVFPEDEGVFSCTATNSISSVETKCKLTIKPLDKQSSKRLPTGSDKPPKIVSHLES 8780

Query: 275  ------------CKLTPLNSSNIL------------DLKYKN--GVASLQIQEVFPEDEG 308
                        C++   +  +++            D +Y N   +  LQI E+FPED G
Sbjct: 8781 RFVKDGDAVTLACRIIGADHFDVVWLHNNKEIKPSKDFQYSNEANIYRLQIAEIFPEDGG 8840

Query: 309  VYVCTATNSLGTAETKCKLTV 329
             Y C A N  G + + C + V
Sbjct: 8841 TYTCEAFNDAGESFSTCTINV 8861

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
FB|FBgn0005666	8933	bt "bent" [Drosophila melanoga	0.764	0.030	0.522	4e-73
MGI|MGI:894806	1941	Mylk "myosin, light polypeptid	0.266	0.048	0.39	2.9e-23
RGD|1310915	1942	Mylk "myosin light chain kinas	0.269	0.049	0.364	2.5e-19
UNIPROTKB|Q15746	1914	MYLK "Myosin light chain kinas	0.255	0.047	0.362	9e-18
FB|FBgn0052311	3651	zormin "zormin" [Drosophila me	0.280	0.027	0.366	1e-16
UNIPROTKB|F1NQ78	1906	MYLK "Uncharacterized protein"	0.289	0.054	0.368	3.8e-21
UNIPROTKB|P11799	1906	P11799 "Myosin light chain kin	0.289	0.054	0.368	3.8e-21
UNIPROTKB|O97791	2000	titin "Titin" [Oryctolagus cun	0.269	0.048	0.333	8.3e-21
WB|WBGene00006820	8081	unc-89 [Caenorhabditis elegans	0.275	0.012	0.346	1.4e-19
UNIPROTKB|F1PIF6	1960	MYLK "Uncharacterized protein"	0.255	0.046	0.351	9.2e-18

FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)]

 Score = 700 (251.5 bits), Expect = 4.0e-73, Sum P(2) = 4.0e-73
 Identities = 150/287 (52%), Positives = 182/287 (63%)

Query:    11 STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
             S KP P V+WYK  RELSK +Y+M++SDGVV+MEIIDCKP DSG+Y C ATN HGTDET+
Sbjct:  8461 SGKPVPNVRWYKDGRELSKYEYAMTHSDGVVTMEIIDCKPSDSGKYSCKATNCHGTDETD 8520

Query:    71 CVVIVXXXXXXXXXXXLAHNFLYSGDRKYIEKHIRPAPA-IITTRQEIKSSYSSHTDDTG 129
             CVVIV           LAHNFLYSGDRKYIE+ I+PAP  I+T+RQ   SS  + ++  G
Sbjct:  8521 CVVIVEGEWVTPEQAQLAHNFLYSGDRKYIEQPIKPAPLPIVTSRQYTSSSVQNTSEPQG 8580

Query:   130 RTTTQMXXXXXXXXXXXXXXXXXXKKITRRMNSILXXXXXXXXXXXXKELIMPPDTA-MT 188
                                     KK     NS+             KELI+PPD + M 
Sbjct:  8581 DKVN--------VSNSNSSGISNKKKYAS--NSLQAPGSPSRSRSATKELILPPDDSLMC 8630

Query:   189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
              P+F   L D TI DG+ L L+  VKGDPEP++SW+KNG+ L+SS+ILDL+YKNG+A+L 
Sbjct:  8631 KPEFTKPLHDLTIHDGEQLILTCYVKGDPEPQISWSKNGKSLSSSDILDLRYKNGIATLT 8690

Query:   249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT--PLNSSNILDLKYKNG 293
             I EVFPEDEGV  CTATNS+G  ETKCKLT  PL+  NI   K   G
Sbjct:  8691 INEVFPEDEGVITCTATNSVGAVETKCKLTIQPLDK-NINKRKVNAG 8736

GO:0005737 "cytoplasm" evidence=ISS

GO:0004687 "myosin light chain kinase activity" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

MGI|MGI:894806 Mylk "myosin, light polypeptide kinase" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
 Identities = 39/100 (39%), Positives = 56/100 (56%)

Query:   179 LIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL 238
             L+  P+ A T P F++ L D  + +GQ   L   V+G P PRV+W  NGQP+  ++ +  
Sbjct:   491 LVDRPNLAQTAPSFSSVLKDSVVIEGQDFVLRCSVQGTPAPRVTWLLNGQPIQFAHSI-- 548

Query:   239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
               + GVA L IQ+  PED G Y C A N++G  +  C  T
Sbjct:   549 -CEAGVAELHIQDALPEDRGTYTCLAENAMG--QVSCSAT 585

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001725 "stress fiber" evidence=ISO

GO:0003779 "actin binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004687 "myosin light chain kinase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IMP

GO:0014820 "tonic smooth muscle contraction" evidence=IMP

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0030027 "lamellipodium" evidence=ISO

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0032060 "bleb assembly" evidence=ISO

GO:0032154 "cleavage furrow" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=ISO

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=ISO

GO:0071476 "cellular hypotonic response" evidence=ISO

GO:0090303 "positive regulation of wound healing" evidence=ISO

RGD|1310915 Mylk "myosin light chain kinase" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
 Identities = 35/96 (36%), Positives = 54/96 (56%)

Query:   183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN 242
             P++  + P F  KL D  + +G+ L L   V  DP   V+WT NG+ L ++  + L  + 
Sbjct:  1115 PESQGSAPVFKEKLQDVHVAEGEKLLLQCQVTSDPPATVTWTLNGKTLKTTKFIILAQEG 1174

Query:   243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
              + S+ I++  PED G+Y C A NS G AE  C++T
Sbjct:  1175 SLFSVSIEKALPEDRGLYKCVAKNSAGQAECSCQVT 1210

GO:0001725 "stress fiber" evidence=IEA

GO:0004687 "myosin light chain kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0032060 "bleb assembly" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IEA

GO:0071476 "cellular hypotonic response" evidence=IEA

GO:0090303 "positive regulation of wound healing" evidence=IEA

UNIPROTKB|Q15746 MYLK "Myosin light chain kinase, smooth muscle" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 9.0e-18, Sum P(3) = 9.0e-18
 Identities = 33/91 (36%), Positives = 49/91 (53%)

Query:   188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
             T P F  KL D  + +G+ L L   V  DP   + WT NG+ L ++  + L  +  + S+
Sbjct:  1096 TAPAFKQKLQDVHVAEGKKLLLQCQVSSDPPATIIWTLNGKTLKTTKFIILSQEGSLCSV 1155

Query:   248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
              I++  PED G+Y C A N  G AE  C++T
Sbjct:  1156 SIEKALPEDRGLYKCVAKNDAGQAECSCQVT 1186

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030027 "lamellipodium" evidence=IDA

GO:0030335 "positive regulation of cell migration" evidence=IDA

GO:0004687 "myosin light chain kinase activity" evidence=IDA

GO:0051928 "positive regulation of calcium ion transport" evidence=IDA

GO:0032154 "cleavage furrow" evidence=IDA

GO:0001725 "stress fiber" evidence=IDA

GO:0090303 "positive regulation of wound healing" evidence=IDA

GO:0071476 "cellular hypotonic response" evidence=IDA

GO:0006939 "smooth muscle contraction" evidence=ISS

GO:0014820 "tonic smooth muscle contraction" evidence=ISS

GO:0032060 "bleb assembly" evidence=IMP

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006936 "muscle contraction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0052311 zormin "zormin" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
 Identities = 37/101 (36%), Positives = 55/101 (54%)

Query:   184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
             + A   P F   L D  +  G       +V+  P+P+V+WT NG  L S +   ++Y+NG
Sbjct:  3547 ELAQRQPLFITPLKDIAVGVGGTARFECIVQAHPQPQVNWTHNGGLLESGSRHCIEYRNG 3606

Query:   244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSN 284
             V  L + + +P+D G Y CTA N LG A T   LT ++S+N
Sbjct:  3607 VCRLTLPQAYPDDNGSYACTAINPLGAATTSGNLT-VSSTN 3646

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NQ78 MYLK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 3.8e-21, Sum P(3) = 3.8e-21
 Identities = 38/103 (36%), Positives = 56/103 (54%)

Query:   182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK 241
             PP +  T P F  KL D  + DG+ L L   +  DP   VSWT + + + SS  + +  +
Sbjct:  1076 PPPSKGTAPSFTEKLQDAKVADGEKLVLQCRISSDPPASVSWTLDSKAIKSSKSIVISQE 1135

Query:   242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSN 284
               + SL I++V PED G Y C A N+ G AE  CK+   ++S+
Sbjct:  1136 GTLCSLTIEKVMPEDGGEYKCIAENAAGKAECACKVLVEDTSS 1178

GO:0005524 "ATP binding" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0004687 "myosin light chain kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0032060 "bleb assembly" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IEA

GO:0071476 "cellular hypotonic response" evidence=IEA

GO:0090303 "positive regulation of wound healing" evidence=IEA

UNIPROTKB|P11799 P11799 "Myosin light chain kinase, smooth muscle" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 3.8e-21, Sum P(3) = 3.8e-21
 Identities = 38/103 (36%), Positives = 56/103 (54%)

Query:   182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK 241
             PP +  T P F  KL D  + DG+ L L   +  DP   VSWT + + + SS  + +  +
Sbjct:  1076 PPPSKGTAPSFTEKLQDAKVADGEKLVLQCRISSDPPASVSWTLDSKAIKSSKSIVISQE 1135

Query:   242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSN 284
               + SL I++V PED G Y C A N+ G AE  CK+   ++S+
Sbjct:  1136 GTLCSLTIEKVMPEDGGEYKCIAENAAGKAECACKVLVEDTSS 1178

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004687 "myosin light chain kinase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0032060 "bleb assembly" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IEA

GO:0071476 "cellular hypotonic response" evidence=IEA

GO:0090303 "positive regulation of wound healing" evidence=IEA

UNIPROTKB|O97791 titin "Titin" [Oryctolagus cuniculus (taxid:9986)]

 Score = 178 (67.7 bits), Expect = 8.3e-21, Sum P(3) = 8.3e-21
 Identities = 32/96 (33%), Positives = 52/96 (54%)

Query:   182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK 241
             P +  +TPP   + L + T+ +G+ + L   + G P P V+W +    + SS    + ++
Sbjct:   893 PAEIPVTPPTLVSGLKNMTVIEGESVTLECHISGYPSPTVTWYREDYQIESSIDFQITFQ 952

Query:   242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
             +G+A L I+E F ED G + C+A N  GT  T C L
Sbjct:   953 SGIARLMIREAFAEDRGRFTCSAVNEAGTVSTSCYL 988

GO:0031433 "telethonin binding" evidence=IPI

WB|WBGene00006820 unc-89 [Caenorhabditis elegans (taxid:6239)]

 Score = 175 (66.7 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
 Identities = 34/98 (34%), Positives = 51/98 (52%)

Query:   180 IMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK 239
             ++  +    PP F  KL DK   +G  +D    V+G PEP + W  + QPL  S+   L+
Sbjct:   638 VLKVEKEAAPPAFVTKLRDKECKEGDVIDFECEVEGWPEPELVWLVDDQPLRPSHDFRLQ 697

Query:   240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
             Y    A L+I++  P+D GVY     N  G+ E+K +L
Sbjct:   698 YDGQTAKLEIRDAQPDDTGVYTVKIQNEFGSIESKAEL 735

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005021 "vascular endothelial growth factor-activated receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048010 "vascular endothelial growth factor receptor signaling pathway" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0031672 "A band" evidence=IDA

GO:0017048 "Rho GTPase binding" evidence=IPI

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

GO:0031430 "M band" evidence=IDA

GO:0019902 "phosphatase binding" evidence=IPI

UNIPROTKB|F1PIF6 MYLK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 169 (64.5 bits), Expect = 9.2e-18, Sum P(3) = 9.2e-18
 Identities = 32/91 (35%), Positives = 48/91 (52%)

Query:   188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
             T P F  KL D  + +G+ L L   V  DP   ++W  NG+ L ++  + L  +  + S+
Sbjct:  1140 TAPAFKEKLQDVHVTEGEKLLLQCQVSSDPPATITWMLNGKTLKTTKFIILSQEGSLCSV 1199

Query:   248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
              I++  PED G Y C A N  G AE  C++T
Sbjct:  1200 SIEKALPEDRGFYKCIAKNGAGQAECSCQVT 1230

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	356
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	5e-28
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-16
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-13
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-13
smart00409	85	smart00409, IG, Immunoglobulin	3e-13
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-12
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-11
smart00409	85	smart00409, IG, Immunoglobulin	6e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	6e-11
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	7e-11
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	2e-09
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	3e-09
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-08
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	2e-08
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	4e-08
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	5e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	7e-08
smart00409	85	smart00409, IG, Immunoglobulin	7e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	8e-08
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-07
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-07
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	2e-07
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	5e-07
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	5e-07
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	5e-07
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	8e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-06
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	2e-06
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	3e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	6e-06
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	6e-06
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	7e-06
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	8e-06
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	1e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	1e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	1e-05
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	1e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	1e-05
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-05
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	2e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	3e-05
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	4e-05
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	5e-05
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	6e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	6e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	6e-05
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	1e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	1e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	1e-04
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	2e-04
cd05864	70	cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l	2e-04
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	2e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-04
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	3e-04
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	4e-04
cd05875	77	cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul	4e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	4e-04
cd05874	77	cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like	6e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	6e-04
cd04973	79	cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like	6e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	7e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	8e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	9e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	9e-04
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	0.001
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	0.001
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	0.002
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	0.002
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	0.002
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.002
cd05897	95	cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig	0.002
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	0.002
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	0.003
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.003
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	0.003
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	0.003
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	0.003
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	0.003
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score =  104 bits (262), Expect = 5e-28
 Identities = 40/89 (44%), Positives = 53/89 (59%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
           P+F  K  D  + +G+    +  V GDP+P VSW K+GQPL SS+   + Y+ G  +L I
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             V P+DEG Y C ATNS G AE   +LT
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELT 89

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 10/81 (12%)

Query: 5  IKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG 54
          ++V+ G +          P PTV W+K  + L S   + ++Y  G  ++ I + +P+D G
Sbjct: 10 VEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEG 69

Query: 55 EYKCVATNKHGTDETNCVVIV 75
          +Y CVATN  G  E +  + V
Sbjct: 70 KYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
           GQ + L+   +G+P P ++W K+G+PL  SN          ++L I+ V  ED G+Y C 
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVA----SGSTLTIKSVSLEDSGLYTCV 57

Query: 264 ATNSLG 269
           A NS G
Sbjct: 58  AENSAG 63

Length = 63

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNG-QPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 262
           G+ + LS    G P P V+W K G + L  S    +      ++L I  V PED G Y C
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTC 68

Query: 263 TATNSLGTAETKCKLT 278
            ATNS G+A +   LT
Sbjct: 69  AATNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNG-QPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 262
           G+ + LS    G P P V+W K G + L  S    +      ++L I  V PED G Y C
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTC 68

Query: 263 TATNSLGTAETKCKLT 278
            ATNS G+A +   LT
Sbjct: 69  AATNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
           +G PEP VSW K+GQPLN  N       +G  +L I E    DEG Y C ATN +G  E+
Sbjct: 22  RGHPEPTVSWRKDGQPLNLDNERVRIVDDG--NLLIAEARKSDEGTYKCVATNMVGERES 79

Query: 274 K 274
            
Sbjct: 80  A 80

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 57.9 bits (140), Expect = 6e-11
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 11 STKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
          S  PPP V WYK   +L      +S+S S    ++ I +  PEDSG Y C ATN  G+  
Sbjct: 19 SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSAS 78

Query: 69 TNCVVIV 75
          +   + V
Sbjct: 79 SGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 57.9 bits (140), Expect = 6e-11
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 11 STKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
          S  PPP V WYK   +L      +S+S S    ++ I +  PEDSG Y C ATN  G+  
Sbjct: 19 SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSAS 78

Query: 69 TNCVVIV 75
          +   + V
Sbjct: 79 SGTTLTV 85

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 57.5 bits (138), Expect = 6e-11
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 209 LSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN----GVASLQIQEVFPEDEGVYVCTA 264
           L+ +  G P P ++W KNG+PL SS +  ++       G ++L I  V  ED G Y C A
Sbjct: 3   LTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVA 62

Query: 265 TNSLGTAETK 274
           +NS GT    
Sbjct: 63  SNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 57.0 bits (138), Expect = 7e-11
 Identities = 28/68 (41%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 213 VKGDPEPRVSWTKNG--QPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
           V GDP P V W K     P   + ILD K      SL+I+ V   DEG Y C A N +G 
Sbjct: 7   VGGDPVPTVLWRKEDGELPKGRAEILDDK------SLKIRNVTAGDEGSYTCEAENMVGK 60

Query: 271 AETKCKLT 278
            E    LT
Sbjct: 61  IEASASLT 68

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG-VASLQIQEVFPEDEG 258
           TI +G+ L+L+  V GDP+P VSW KN Q L  S+  ++K + G  ASL I+ V  ED G
Sbjct: 12  TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSG 71

Query: 259 VYVCTATNSLG 269
            Y     N  G
Sbjct: 72  KYGIVVKNKYG 82

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 191 QFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ 250
           ++   ++D   D G  L       G+P P   W KNGQPL S N   ++ + G   L+I 
Sbjct: 1   EWLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASEN--RIEVEAG--DLRIT 56

Query: 251 EVFPEDEGVYVCTATNSLGTAETKCKLT 278
           ++   D G+Y C A N  GT     +L 
Sbjct: 57  KLSLSDSGMYQCVAENKHGTIYASAELA 84

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 11 STKPPPTVKWYKGNRELS-----KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
          S  PPPT+ W K  + L      +   S   S G  ++ I +   EDSG Y CVA+N  G
Sbjct: 8  SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67

Query: 66 TDETN 70
          T   +
Sbjct: 68 TVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPED-EGVYVCTATNSLG 269
           KG+P P  SWT+NG   +      +  K    +L I        ED EG Y C A+N LG
Sbjct: 8   KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELG 67

Query: 270 TA 271
           TA
Sbjct: 68  TA 69

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG-VASLQIQEVFPEDEG 258
           TI +G+ L+L+  V G+P+P V W KN Q +  S    +K + G  ASL I+ V  ED G
Sbjct: 12  TIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSG 71

Query: 259 VYVCTATNSLG 269
            Y     N  G
Sbjct: 72  KYSINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 266
           L L  + +G P P +SW K G  L +      K++N   +L+I  V  ED+G Y CTA+N
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELPADRT---KFENFNKTLKIDNVSEEDDGEYRCTASN 57

Query: 267 SLGTA 271
           SLG+A
Sbjct: 58  SLGSA 62

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 49.0 bits (117), Expect = 7e-08
 Identities = 20/54 (37%), Positives = 25/54 (46%)

Query: 276 KLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
               L  S    +      ++L I  V PED G Y C ATNS G+A +   LTV
Sbjct: 32  GGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 49.0 bits (117), Expect = 7e-08
 Identities = 20/54 (37%), Positives = 25/54 (46%)

Query: 276 KLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
               L  S    +      ++L I  V PED G Y C ATNS G+A +   LTV
Sbjct: 32  GGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 48.2 bits (115), Expect = 8e-08
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
           P P + W K  + L + +  ++      ++ I     EDSG Y CVA N  G
Sbjct: 14 NPVPNITWLKDGKPLPESNRFVASGS---TLTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 13 KPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
          +P PTV W K  + L       +  +    S+ I + +  DSG+Y     N  G      
Sbjct: 11 RPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI 70

Query: 72 VVIV 75
           V V
Sbjct: 71 NVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 20/66 (30%), Positives = 30/66 (45%)

Query: 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 266
           + L   + G P P V+W+K+G+PL  S  + ++      SL I+     D G Y  T  N
Sbjct: 2   VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKN 61

Query: 267 SLGTAE 272
             G   
Sbjct: 62  PAGEKS 67

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN-GVASLQIQEVFPEDEGVYV 261
           +GQ +D     +G P+P ++WTK G  L+    +D ++      +L+I  V   D+G Y 
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLS----VDRRHLVLSSGTLRISRVALHDQGQYE 56

Query: 262 CTATNSLGTAETKCKLT 278
           C A N +G+  T  +LT
Sbjct: 57  CQAVNIVGSQRTVAQLT 73

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV---A 245
           PP+     +D  +  G    L+   +G P P + W KNGQPL +    D +    V    
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDK-DDPRSHRIVLPSG 59

Query: 246 SLQIQEVFP-----EDEGVYVCTATNSLGTA 271
           SL    V        DEGVYVC A NSLG A
Sbjct: 60  SLFFLRVVHGRKGRSDEGVYVCVAHNSLGEA 90

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 214 KGDPEPRVSWTKNGQPL-NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 272
           K  P+P +SW+K  + L NSS I      +G  SL+I  V   DEG Y C A N  G A 
Sbjct: 11  KAAPKPTISWSKGTELLTNSSRICIWP--DG--SLEILNVTKSDEGKYTCFAENFFGKAN 66

Query: 273 T 273
           +
Sbjct: 67  S 67

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY--KNGVASLQIQEVFP 254
            + T + GQ + L+    G PEP ++WTK+G+P+ S    + KY      + + I +V  
Sbjct: 11  VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG---EEKYSFNEDGSEMTILDVDK 67

Query: 255 EDEGVYVCTATNSLGTAETKCKL 277
            DE  Y C A N  G  E +  L
Sbjct: 68  LDEAEYTCIAENKAGEQEAEIHL 90

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 19/67 (28%), Positives = 34/67 (50%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
           G+ ++ + V  G P P ++W  N   +  S  + +  + G  +L I++V   D+G Y C 
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 264 ATNSLGT 270
           A N+ G 
Sbjct: 61  AINTRGM 67

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 279 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
           P   + ILD K      SL+I+ V   DEG Y C A N +G  E    LTV
Sbjct: 25  PKGRAEILDDK------SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 266
           L L  + +G P P V W +   PL+ +     K  N   +LQ+  V   D+G YVCTA N
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRT---KKLNNNKTLQLDNVLESDDGEYVCTAEN 57

Query: 267 SLGTA 271
           S G+A
Sbjct: 58  SEGSA 62

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 209 LSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268
           L   VK  P P + W KNG+ ++  N      K+G  SL I++V  ED G Y    TN  
Sbjct: 3   LPVKVKAYPPPEIQWYKNGKLISEKN---RTKKSGH-SLTIKDVTEEDAGNYTVVLTNKQ 58

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
           +GDPEP ++W K+G  +  S    +  +     L I++V   D+G Y C A N++G A  
Sbjct: 8   QGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASV 64

Query: 274 KCKLT 278
              L+
Sbjct: 65  SMVLS 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 213 VKGDPEPRVSWTKNGQPLNS--SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
            +G P PR++W KNG  +    S  L L   NG + L I  V  ED G Y C A N  G 
Sbjct: 7   AEGIPLPRLTWLKNGMDITPKLSKQLTLI-ANG-SELHISNVRYEDTGAYTCIAKNEAGV 64

Query: 271 AE 272
            E
Sbjct: 65  DE 66

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN---ILDLK 239
           P T +T P+        T+ +G+    S  V G+P P V+W + GQ + SS    I   +
Sbjct: 3   PATILTKPR------SLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTE 56

Query: 240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           YK   ++ +I +V   DEG Y     NS G  E +  LT
Sbjct: 57  YK---STFEISKVQMSDEGNYTVVVENSEGKQEAQFTLT 92

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 15/76 (19%)

Query: 4  VIKVKVGST---------KPPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKP 50
          +  V  GST          P PT+ W K  +   K      Y +      + +E     P
Sbjct: 3  LHAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILE--SVVP 60

Query: 51 EDSGEYKCVATNKHGT 66
           DSG+Y C+  NK+G+
Sbjct: 61 SDSGKYTCIVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 9  VGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
            S  P P  +W K  + L+  +  +    G + +  +     DSG Y+CVA NKHGT
Sbjct: 22 KASGNPRPAYRWLKNGQPLASEN-RIEVEAGDLRITKLSL--SDSGMYQCVAENKHGT 76

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 14 PPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
          P PT++W K  +E  +      Y +      + ME +   P D G Y CV  N++G+
Sbjct: 22 PTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTCVVENEYGS 76

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 213 VKGDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
             G+P P + W KNG+     + I   K +N   SL ++ V P D+G Y C   N  G+
Sbjct: 18  AAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 76

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 216 DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275
            P   + WT+ G  L  S  +D    NG+  L I+ V   D G YVCT +N L T E   
Sbjct: 29  SPAYTLVWTRVGGGL-PSRAMDF---NGI--LTIRNVQLSDAGTYVCTGSNMLDTDEATA 82

Query: 276 KL 277
            L
Sbjct: 83  TL 84

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 4  VIKVKVGSTKPPPTVKWYKGNRELSK----RDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59
          V+K +  S  P    KW+K  +EL++    R+  +        ++I   K  DSGEY CV
Sbjct: 2  VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCV 61

Query: 60 ATNKHGTDET 69
            N  G D  
Sbjct: 62 VENILGNDTV 71

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
          P P + W K   EL          +    ++I +   ED GEY+C A+N  G+      V
Sbjct: 11 PTPEISWIKIGGELPADRTKFENFNKT--LKIDNVSEEDDGEYRCTASNSLGSARHTISV 68

Query: 74 IVE 76
           VE
Sbjct: 69 TVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 209 LSAVVKGDPEPRVSWTKNG-QPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 267
           L     G P P+++W K+G     ++    +          I +V  ED GVY CTA N+
Sbjct: 3   LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNT 62

Query: 268 LGTAETKCKLTPL 280
            G+      LT L
Sbjct: 63  AGSISANATLTVL 75

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 213 VKGDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVAS--LQIQEVFPEDEGVYVCTATNSLG 269
               P  R  W K+G+ LN  N   ++K +N   +  LQI +    D G Y C   N LG
Sbjct: 8   TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILG 67

Query: 270 TAETK 274
                
Sbjct: 68  NDTVT 72

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
           G+   L   V+G P P ++W+ NG P+  ++  D +      +L + +V P D  VY C 
Sbjct: 1   GETARLDCQVEGIPTPNITWSINGAPIEGTDP-DPRRHVSSGALILTDVQPSDTAVYQCE 59

Query: 264 ATNSLG 269
           A N  G
Sbjct: 60  ARNRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
           GQ + L     G+P P++ W K    + SS        +G A L+I  +  EDEG Y C 
Sbjct: 16  GQNVTLECFALGNPVPQIKWRKVDGSMPSSAE---ISMSG-AVLKIPNIQFEDEGTYECE 71

Query: 264 ATNSLG 269
           A N  G
Sbjct: 72  AENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
          P PT+ W K    +   +   S+++    M I+D    D  EY C+A NK G  E
Sbjct: 31 PEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQE 85

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 209 LSAVVKGDPEPRVSWTKNGQPLNSSNILD-LKYKNGVASLQIQEVFPEDEGVYVCTATNS 267
           L     G+P P ++W K+G+P    + +   K +    +L ++ V P D G Y C   N 
Sbjct: 14  LKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENK 73

Query: 268 LGT 270
            G+
Sbjct: 74  YGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 213 VKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 272
           V G P P V W KNG  +  S+   +  ++   +LQ+  +   DEG Y C A N +G  +
Sbjct: 8   VTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQ 64

Query: 273 TKCKL 277
              +L
Sbjct: 65  AGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 5  IKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
          + VKV    PPP ++WYK  + +S++  + +   G  S+ I D   ED+G Y  V TNK
Sbjct: 3  LPVKV-KAYPPPEIQWYKNGKLISEK--NRTKKSG-HSLTIKDVTEEDAGNYTVVLTNK 57

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
           P     K  D     GQ + L     G+P P + W K  +P+ ++  + +      A L+
Sbjct: 1   PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSG----AVLK 56

Query: 249 IQEVFPEDEGVYVCTATNSLG 269
           I  + PEDEG Y C A N  G
Sbjct: 57  IFNIQPEDEGTYECEAENIKG 77

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
           G  + L  V  G+P P ++W K+ +PL  + I + + K    +L ++ + PED G Y C 
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKK--WTLSLKNLKPEDSGKYTCH 66

Query: 264 ATNSLG 269
            +N  G
Sbjct: 67  VSNRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
          P PTV W K + EL K    +       S++I +    D G Y C A N  G  E +  +
Sbjct: 11 PVPTVLWRKEDGELPKGRAEILDDK---SLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67

Query: 74 IV 75
           V
Sbjct: 68 TV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 14 PPPTVKWYKGNRELSKRD-YSMSYSDG-VVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
          P P V W K ++ L+  D Y++    G   S+ I     EDSG+Y  V  NK+G +  + 
Sbjct: 29 PDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88

Query: 72 VVIV 75
           V V
Sbjct: 89 TVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 266
            G P P V W KNGQ +      +  +K GV  L I EV  +D G Y    TN
Sbjct: 8   YGYPPPEVKWYKNGQLIVL----NHTFKRGVH-LTIYEVTEKDAGNYTVVLTN 55

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS-------LQIQEVFPEDEG 258
           C+  +  V+G+P+P ++W  NG  LN S+ +  +    V +       LQ       + G
Sbjct: 2   CIPFT--VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNG 59

Query: 259 VYVCTATNSLGTAE 272
            Y   A+N  G   
Sbjct: 60  NYTLVASNEYGQDS 73

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVC 262
           G  + L+  V G P+  V+W K G+ L  S  +   + +    +L I  V PED G Y C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 263 TA 264
             
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 14 PPPTVKWYKGNRELSKRDY--SMSYSDGVVSMEIIDC----KPE--DSGEYKCVATNKHG 65
          P PT+ WY     L++ DY  +  + +     E   C     P   ++G Y  VA+N++G
Sbjct: 11 PKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYG 70

Query: 66 TDETNCVVI 74
           D  +    
Sbjct: 71 QDSKSISAH 79

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 213 VKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
            +G P+P ++W  NG P+      D + +    +L +  V P D  VY C A+N  G  
Sbjct: 10  AEGIPQPTITWRLNGVPIEELP-PDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL 67

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ---EVFPED-EGVYVCTATNSLG 269
           KG+P P   WT+NG+  N +    +  +    +L I       PED EG Y C A N+LG
Sbjct: 8   KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLG 67

Query: 270 TA 271
           TA
Sbjct: 68  TA 69

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 215 GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
           G+P+P ++W K+  P+++++   +K     A LQI+     D+G Y C ATNS GT
Sbjct: 9   GNPDPEITWFKDFLPVDTTSNGRIKQLRSGA-LQIENSEESDQGKYECVATNSAGT 63

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPED----EGVYVCTATNSLG 269
           KG P P  SWT+NG   +      +  K    +L I  +  E     EGVY CTA N  G
Sbjct: 8   KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERG 67

Query: 270 TA 271
            A
Sbjct: 68  AA 69

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 77

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 9/74 (12%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLN-SSNILDLKYKNGVASLQIQEVF-----PEDE 257
           G  + L+   +G+P P++ W K+G  LN  S+    +  NG  SL I  V        DE
Sbjct: 14  GGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--SLLITSVVHSKHNKPDE 71

Query: 258 GVYVCTATN-SLGT 270
           G Y C A N SLG+
Sbjct: 72  GFYQCVAQNDSLGS 85

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
           G  L L   ++ D +  ++WTK+G  L  +N   +  +     +QI++  P D G+Y C 
Sbjct: 9   GDLLQLRCRLRDDVQ-SINWTKDGVQLGENNRTRITGE----EVQIKDAVPRDSGLYACV 63

Query: 264 ATNSLGTAETKC 275
            ++  G+  T  
Sbjct: 64  TSSPSGSDTTYF 75

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. Length = 79

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 289 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
           K++N   +L+I  V  ED+G Y CTA+NSLG+A     +TV 
Sbjct: 30  KFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGV 259
            + +G+ + L+    G+P P  +W K+G PL+SS       +NG  +  +     ED G 
Sbjct: 10  VVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSS-------QNGFFTPNVS---AEDSGT 59

Query: 260 YVCTATNS 267
           Y C A+N 
Sbjct: 60  YTCVASNG 67

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.2 bits (86), Expect = 9e-04
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 289 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
           K  N   +LQ+  V   D+G YVCTA NS G+A     +TV
Sbjct: 30  KKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
           GQ   L    +GDPEP + W      L S++   L Y NG  +L I     +D G + C 
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG--TLDILITTVKDTGSFTCI 58

Query: 264 ATNSLGTA 271
           A+N+ G A
Sbjct: 59  ASNAAGEA 66

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 3  NVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
          N+  V VG+  P P VKW KG  EL+K D  M     V  +E+ +    +S  Y CVA +
Sbjct: 5  NLTCVAVGA--PMPYVKWMKGGEELTKED-EMPVGRNV--LELTNIY--ESANYTCVAIS 57

Query: 63 KHGTDETNCVV 73
            G  E    V
Sbjct: 58 SLGMIEATAQV 68

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 214 KGDPEPRVSWTKNGQPL-NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
           K  P+P+ SW+K  + L N+S I    + +G  SL+I  +   DEG Y C A N+ G A
Sbjct: 11  KAAPKPKFSWSKGTELLVNNSRIS--IWDDG--SLEILNITKLDEGSYTCFAENNRGKA 65

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSY---SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
          P PTV W K  + L     +       DG  ++ I + +  D G YKCVATN  G  E+ 
Sbjct: 25 PEPTVSWRKDGQPL--NLDNERVRIVDDG--NLLIAEARKSDEGTYKCVATNMVGERESA 80

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 299 IQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
           I +V  ED GVY CTA N+ G+      LTV
Sbjct: 44  IVDVKIEDTGVYSCTAQNTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
           G  ++L+ V  G P P V W K G+ L   + + +  +N +    I E        Y C 
Sbjct: 1   GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVG-RNVLELTNIYE-----SANYTCV 54

Query: 264 ATNSLGTAETKCKLT 278
           A +SLG  E   ++T
Sbjct: 55  AISSLGMIEATAQVT 69

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 212 VVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 266
              G P P +SW +NG     S  L     +  ++L +  V  ED G Y C A+N
Sbjct: 24  AEGGPPPPTISWYRNGSISGGSGGL----GSSGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143305 cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 18 VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76
          ++WYK +  L K +       G   + IID    DSG Y C     H   + N   I++
Sbjct: 32 LQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIK 90

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. Length = 95

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 14 PPPTVKWYKGNRE--LSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
          P P  KW K N +  L+   YSM   + V++      K +D+G Y C+ +N +G 
Sbjct: 32 PFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPD---KYKDAGRYVCIVSNIYGK 83

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 14 PPPTVKWYKGNRELSKRD-YSMSYSDG-VVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
          P P V W+K ++++   + YS+    G   S+ I     EDSG+Y     NK+G +  + 
Sbjct: 29 PDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV 88

Query: 72 VVIV 75
           V V
Sbjct: 89 TVSV 92

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
          P P + W KG  +LS     +  S G  ++ I      D G+Y+C A N  G+  T   +
Sbjct: 15 PQPVIAWTKGGSQLSVDRRHLVLSSG--TLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72

Query: 74 IV 75
           V
Sbjct: 73 TV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
          P P +KW K +  +      +S S  V  ++I + + ED G Y+C A N  G D     +
Sbjct: 29 PVPQIKWRKVDGSMPSS-AEISMSGAV--LKIPNIQFEDEGTYECEAENIKGKDTHQGRI 85

Query: 74 IVE 76
           V+
Sbjct: 86 YVQ 88

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 2  QNVIKVKVGSTKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 60
          QNV         P P ++W K    + +  + SMS   G V ++I + +PED G Y+C A
Sbjct: 17 QNVTLECFALGNPVPVIRWRKILEPMPATAEISMS---GAV-LKIFNIQPEDEGTYECEA 72

Query: 61 TNKHGTDETNCVVIVE 76
           N  G D+    V V+
Sbjct: 73 ENIKGKDKHQARVYVQ 88

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 14/46 (30%), Positives = 18/46 (39%)

Query: 220 RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT 265
            V W   G PL      + +       L I+ V P D GVY C + 
Sbjct: 26  SVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSV 71

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 9/82 (10%)

Query: 195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSW-------TKNGQPLNSSNILDLKYKNGVASL 247
            L ++T  + + + L+   +GDP P ++W       ++  + L+    + ++    V+SL
Sbjct: 7   YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGR--IVVRGHARVSSL 64

Query: 248 QIQEVFPEDEGVYVCTATNSLG 269
            +++V   D G Y C A+N +G
Sbjct: 65  TLKDVQLTDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
          P P V W + +  LS        ++   ++++ +    D GEY C A N  G+   +  V
Sbjct: 11 PTPEVHWDRIDGPLSPNRTKKLNNNK--TLQLDNVLESDDGEYVCTAENSEGSARHHYTV 68

Query: 74 IVE 76
           VE
Sbjct: 69 TVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		99.97
KOG4221|consensus	1381		99.97
KOG4222|consensus	1281		99.96
PHA02785	326	IL-beta-binding protein; Provisional	99.96
KOG4222|consensus	1281		99.95
KOG4194|consensus	873		99.95
PHA02826	227	IL-1 receptor-like protein; Provisional	99.91
KOG4194|consensus	873		99.89
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.82
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.8
PHA02785	326	IL-beta-binding protein; Provisional	99.79
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.78
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.78
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.78
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.78
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.77
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.77
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.77
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.76
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.76
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.76
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.76
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.75
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.75
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.75
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.75
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.75
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.74
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.74
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.74
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.74
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.73
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.73
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.73
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.73
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.73
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.73
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.73
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.72
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.72
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.72
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.71
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.71
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.71
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.71
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.71
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.7
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.7
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.7
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.7
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.7
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.7
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.7
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.7
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.7
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.69
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.69
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.69
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.69
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.69
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.69
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.69
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.69
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.69
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.69
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.69
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.68
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.68
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.68
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.68
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.68
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.68
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.68
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.68
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.68
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.67
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.67
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.67
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.67
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.67
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.67
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.67
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.67
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.67
PHA02826	227	IL-1 receptor-like protein; Provisional	99.67
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.67
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.66
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.66
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.66
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.66
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.66
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.66
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.65
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.65
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.65
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.65
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.65
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.65
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.65
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.65
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.64
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.64
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.64
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.64
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.64
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.63
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.63
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.63
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.63
KOG3515|consensus	741		99.63
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.62
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.62
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.62
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.62
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.62
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.62
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.61
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.61
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.61
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.61
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.61
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.61
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.6
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.6
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.6
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.59
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.59
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.59
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.59
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.58
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.58
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.58
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.58
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.58
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.57
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.57
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.57
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.57
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.57
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.57
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.57
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.57
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.56
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.56
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.56
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.56
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.55
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.55
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.55
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.55
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.55
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.55
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.55
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.54
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.54
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.54
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.54
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.54
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.53
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.53
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.53
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.53
KOG3515|consensus	741		99.53
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.52
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.52
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.52
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.51
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.5
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.5
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.48
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.47
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.47
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.46
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.44
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.44
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.44
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.43
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.42
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.42
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.42
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.42
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.41
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.4
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.38
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.38
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.37
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.37
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.36
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.36
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.36
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.35
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.35
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.34
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.34
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.32
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.31
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.3
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.29
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.27
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.26
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.26
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.25
smart00409	86	IG Immunoglobulin.	99.25
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.24
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.23
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.23
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.23
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.22
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.21
smart00409	86	IG Immunoglobulin.	99.21
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.21
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.19
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.19
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.18
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.16
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.16
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.16
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.15
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.14
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.1
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.07
PHA03376	221	BARF1; Provisional	99.07
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.07
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.05
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.05
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	99.04
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	99.04
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.04
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.98
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.96
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.95
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.95
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.95
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.94
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.94
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.94
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.94
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.9
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.88
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.88
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.88
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.87
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.87
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.83
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.82
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.81
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.8
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.79
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.78
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.78
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.77
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.77
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.76
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.76
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.75
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.74
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.74
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.74
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.74
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.73
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.73
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.72
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.72
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.71
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.68
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.67
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.67
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.65
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.65
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.65
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.65
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.64
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.64
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.63
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.63
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.61
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.59
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.58
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.57
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.55
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.55
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.55
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.55
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.53
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.52
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.51
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.5
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.49
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.49
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.49
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.47
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.47
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.46
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.45
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.44
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.41
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.41
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.4
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.4
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.39
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.38
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.38
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.35
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.34
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.32
smart00407	75	IGc1 Immunoglobulin C-Type.	98.32
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.31
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.29
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.28
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.28
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.26
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.23
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.23
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.22
smart00406	81	IGv Immunoglobulin V-Type.	98.18
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.18
smart00407	75	IGc1 Immunoglobulin C-Type.	98.17
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.16
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.16
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.14
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.13
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	98.13
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.12
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.11
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.09
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.08
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.08
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.08
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.05
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.05
PHA03376	221	BARF1; Provisional	98.04
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.03
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.03
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.03
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.02
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.02
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.97
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.94
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.93
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.92
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.91
smart00406	81	IGv Immunoglobulin V-Type.	97.88
KOG1480|consensus	909		97.88
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.87
PHA02633	63	hypothetical protein; Provisional	97.86
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.85
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.81
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.81
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.81
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.8
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.75
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.72
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.71
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.67
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.65
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.63
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.62
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.62
PHA03273	486	envelope glycoprotein C; Provisional	97.59
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.59
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.58
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.58
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.53
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.51
PHA02633	63	hypothetical protein; Provisional	97.44
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.37
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.36
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.35
PHA03269	566	envelope glycoprotein C; Provisional	97.34
PHA02982	251	hypothetical protein; Provisional	97.28
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.1
KOG1480|consensus	909		97.03
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.97
KOG4597|consensus	560		96.97
PHA03270	466	envelope glycoprotein C; Provisional	96.94
PHA02982	251	hypothetical protein; Provisional	96.91
PHA03271	490	envelope glycoprotein C; Provisional	96.87
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.83
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.8
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.72
KOG4597|consensus	560		96.71
KOG0613|consensus	1205		96.67
PHA03042	286	CD47-like protein; Provisional	96.51
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.46
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.44
PHA03042	286	CD47-like protein; Provisional	96.05
PHA03283	542	envelope glycoprotein E; Provisional	95.84
PHA03282	540	envelope glycoprotein E; Provisional	95.59
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	95.13
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	94.96
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.83
PHA03271	490	envelope glycoprotein C; Provisional	94.55
PHA03269	566	envelope glycoprotein C; Provisional	94.16
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	94.07
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	93.89
KOG0613|consensus	1205		92.85
PHA02865	338	MHC-like TNF binding protein; Provisional	92.61
PHA02865	338	MHC-like TNF binding protein; Provisional	92.38
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	92.2
PHA03270	466	envelope glycoprotein C; Provisional	92.09
PHA03052	69	Hypothetical protein; Provisional	91.24
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	91.08
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	91.07
KOG1026|consensus	774		90.82
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.37
PHA03273	486	envelope glycoprotein C; Provisional	90.17
KOG1026|consensus	774		89.62
PHA03281	642	envelope glycoprotein E; Provisional	89.3
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	89.02
PF11141	66	DUF2914: Protein of unknown function (DUF2914); In	88.03
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	87.86
PHA03286	492	envelope glycoprotein E; Provisional	85.65
COG5475	60	Uncharacterized small protein [Function unknown]	85.07
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	84.7
PHA03283	542	envelope glycoprotein E; Provisional	84.59
PHA03112	141	IL-18 binding protein; Provisional	84.45
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	81.26
PHA03112	141	IL-18 binding protein; Provisional	81.09
PHA03282	540	envelope glycoprotein E; Provisional	81.0

>KOG3513|consensus

Probab=100.00  E-value=2e-39  Score=291.79  Aligned_cols=324  Identities=24%  Similarity=0.359  Sum_probs=238.9

Q ss_pred             ceEEEEEeccCCCCeeEEeeCCEEcccCC-eeEEecCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEEE-EEEEEecc-
Q psy12422          3 NVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDETN-CVVIVESE-   78 (356)
Q Consensus         3 ~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~~-~~l~v~~~-   78 (356)
                      .|.|.|.+.|+|.|+++|+|||..+.... .......|  +|.|.+.. ..|.|.|+|.|+|..|.+.+. +.|..... 
T Consensus        59 ~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G--~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~  136 (1051)
T KOG3513|consen   59 SVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVLGG--TLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIP  136 (1051)
T ss_pred             cEEEEEEecCCCCceeEEEECCeecccccccceeeecC--ceEecCCcchhhcceeEEEeecccceeeccceeecccccc
Confidence            38999999999999999999999987532 22233355  67777776 899999999999999986432 22221100 


Q ss_pred             ------------------------ccc-h---------------------------------------------------
Q psy12422         79 ------------------------EES-K---------------------------------------------------   82 (356)
Q Consensus        79 ------------------------~~~-~---------------------------------------------------   82 (356)
                                              |.. +                                                   
T Consensus       137 ~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~  216 (1051)
T KOG3513|consen  137 KFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPS  216 (1051)
T ss_pred             cCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchh
Confidence                                    000 0                                                   


Q ss_pred             ---------------------------hhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCCceE-
Q psy12422         83 ---------------------------EQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTGRTT-  132 (356)
Q Consensus        83 ---------------------------~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~~~~-  132 (356)
                                                 ............|+.+.|+|-+-  |.|.+.|.+.+++.............. 
T Consensus       217 ~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL  296 (1051)
T KOG3513|consen  217 TQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVL  296 (1051)
T ss_pred             hcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEE
Confidence                                       00000122356899999999987  888999999998654433222221111 


Q ss_pred             ---EEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEE
Q psy12422        133 ---TQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDL  209 (356)
Q Consensus       133 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l  209 (356)
                         .....+.|.|.|.+.+..+.                    ......+.+     ..+|.+...+.+..+..|+++.|
T Consensus       297 ~I~nv~~~D~G~Y~C~AeN~~G~--------------------~~~~~~v~v-----~a~P~w~~~~~d~~~~~gs~v~~  351 (1051)
T KOG3513|consen  297 KIPNVQYEDAGEYECIAENSRGS--------------------ATHSGHVTV-----YAPPYWLQKPQDTEADTGSNVTL  351 (1051)
T ss_pred             EecccCcCCCeEEEEEEeccccc--------------------ceeeEEEEE-----ecCchhhcccceeEecCCCCeEE
Confidence               12445567777776554431                    122333444     77899988999999999999999


Q ss_pred             EEEEcCCCCCeEEEEECCEEccCCCc-eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCC-Cccc-
Q psy12422        210 SAVVKGDPEPRVSWTKNGQPLNSSNI-LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNS-SNIL-  286 (356)
Q Consensus       210 ~C~~~g~p~p~i~W~~~g~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~-~~~~-  286 (356)
                      .|.+.|.|.|.++|++||.++....+ .......+  +|+|.+++.+|+|.|.|.|.|.+|...+++.|.+... |.+. 
T Consensus       352 eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~  429 (1051)
T KOG3513|consen  352 ECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDG--TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPL  429 (1051)
T ss_pred             EEEecCCCCCceEEeeCCeecCccCCCcceEEeCC--EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCC
Confidence            99999999999999999999986554 22334444  8999999999999999999999999988888873322 1111 


Q ss_pred             ---------------------------eeEEeC--------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy12422        287 ---------------------------DLKYKN--------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  325 (356)
Q Consensus       287 ---------------------------~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  325 (356)
                                                 .++|.+              ..++|.|.+++++|+|.|+|.|+|..|.++..+
T Consensus       430 ~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~  509 (1051)
T KOG3513|consen  430 NPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTG  509 (1051)
T ss_pred             CccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEE
Confidence                                       344443              447899999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCCCcccCCCCceeEeeC
Q psy12422        326 KLTVRSTPAANLGKSPSKESDKAPRFFAIVH  356 (356)
Q Consensus       326 ~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~  356 (356)
                      .|.|+.++.|.. ++.+....++...++.|+
T Consensus       510 ~L~Vkd~tri~~-~P~~~~v~~g~~v~l~Ce  539 (1051)
T KOG3513|consen  510 NLIVKDATRITL-APSNTDVKVGESVTLTCE  539 (1051)
T ss_pred             EEEEecCceEEe-ccchhhhccCceEEEEee
Confidence            999999999999 777778888998888874

>KOG3513|consensus

Probab=100.00  E-value=2.1e-39  Score=291.55  Aligned_cols=306  Identities=25%  Similarity=0.343  Sum_probs=228.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE   80 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~   80 (356)
                      |++|.|.|.+.|+|.|.|.|.|.|.....++......+.  .|.|.+++.+|+|.|+|.|.|..|.......+.|..+|.
T Consensus       256 G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~--vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~  333 (1051)
T KOG3513|consen  256 GQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGK--VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPY  333 (1051)
T ss_pred             CCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeecccc--EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCch
Confidence            899999999999999999999977643333323333333  899999999999999999999999999999999987755


Q ss_pred             chhhhhhcccccccCccceeeeccc--CCceeeecccccccCCcccc---CC---CCceEEEEeeccccccccccccCCC
Q psy12422         81 SKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHT---DD---TGRTTTQMSTLSSNYSSSTNNATSP  152 (356)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~  152 (356)
                      ...  ......+..|+.++|.|.+.  |.|.+.|++++.++......   ..   ......+...+++.|-|.+.+..+ 
T Consensus       334 w~~--~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G-  410 (1051)
T KOG3513|consen  334 WLQ--KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYG-  410 (1051)
T ss_pred             hhc--ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccc-
Confidence            433  45566788999999999998  88899999999887643321   11   111112233444555555433221 


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC--CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL--TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL  230 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~  230 (356)
                                         ......+|.|.    ..+|.+...+  ....+..|.++.|.|.+.+.|.|.+.|.|++..+
T Consensus       411 -------------------~i~anA~L~V~----a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~  467 (1051)
T KOG3513|consen  411 -------------------TIYANAELKVL----ASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKL  467 (1051)
T ss_pred             -------------------eEeeeeEEEEE----ccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccc
Confidence                               11223333332    4556666555  3357888999999999999999999999988866


Q ss_pred             cCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc------------------------
Q psy12422        231 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL------------------------  286 (356)
Q Consensus       231 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~------------------------  286 (356)
                      ..+.++.+..+ +  +|.|.+++++|+|.|+|.|.|..|.++.+..|.....+.|.                        
T Consensus       468 ~~~~r~~i~ed-G--tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~  544 (1051)
T KOG3513|consen  468 LQSGRIRILED-G--TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDP  544 (1051)
T ss_pred             ccCceEEECCC-C--cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCC
Confidence            55665554333 3  79999999999999999999999999999888854444332                        


Q ss_pred             ----eeEEeC--------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCC
Q psy12422        287 ----DLKYKN--------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANL  337 (356)
Q Consensus       287 ----~~~~~~--------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  337 (356)
                          .+.|..                    +++.|+|.+++..|+|.|.|+|+-.+.+.++.+.|.|.++|.++-
T Consensus       545 ~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~  619 (1051)
T KOG3513|consen  545 SLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPP  619 (1051)
T ss_pred             CcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCC
Confidence                233321                    225699999999999999999999999999999999999998664

>KOG4221|consensus

Probab=99.97  E-value=7e-30  Score=229.98  Aligned_cols=247  Identities=25%  Similarity=0.426  Sum_probs=181.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCce-eEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT-DETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.+.|.|.++|.||..++..+.+.+...+|  .|.|..++..|.|.|+|.+++..-. .+..+.|+|...+
T Consensus       155 g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG--~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~  232 (1381)
T KOG4221|consen  155 GQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG--ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDP  232 (1381)
T ss_pred             CCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC--cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCc
Confidence            789999999999999999999999999877777777777  7999999999999999999987333 2456777777332


Q ss_pred             cchh----hhhhcccccccCccceeeeccc--CCceeeecccccccCCccccC-CCCce----EEEEeeccccccccccc
Q psy12422         80 ESKE----QQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTD-DTGRT----TTQMSTLSSNYSSSTNN  148 (356)
Q Consensus        80 ~~~~----~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~  148 (356)
                      ....    ........+.+|+++.|+|.+.  |.|.+.|.+++..+....... ..+..    ......+++.|.|.+.+
T Consensus       233 ~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn  312 (1381)
T KOG4221|consen  233 GALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATN  312 (1381)
T ss_pred             ccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecC
Confidence            2221    1122345688999999999998  899999999887775442110 01011    11122334555555533


Q ss_pred             cCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCE
Q psy12422        149 ATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ  228 (356)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~  228 (356)
                      ..                    .......++.|     ..+|.|...+.+....++.++.|.|.+.|.|.|.+.|+|||.
T Consensus       313 ~~--------------------D~idasaev~V-----~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd  367 (1381)
T KOG4221|consen  313 TN--------------------DSIDASAEVTV-----LAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGD  367 (1381)
T ss_pred             CC--------------------cccccceEEEE-----EcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCc
Confidence            11                    11223445555     566889888889999999999999999999999999999999


Q ss_pred             EccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      .+...+.+.+...+   .|.|.-+-..|.|.|.|.+.|..|.+...+.+
T Consensus       368 ~~ipsdy~ki~~~~---~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l  413 (1381)
T KOG4221|consen  368 RIIPSDYFKIVGGG---NLRILGIVKSDEGFYQCVAENDAGSAQAAAQL  413 (1381)
T ss_pred             ccCcccceEecCCC---CcEEEEEecccchhhhhhhccCcccccchhhh
Confidence            88876554443332   28899999999999999999999977665554

>KOG4221|consensus

Probab=99.97  E-value=1.1e-28  Score=222.34  Aligned_cols=309  Identities=23%  Similarity=0.377  Sum_probs=207.7

Q ss_pred             CCceEEEEEecc--CCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCC-----CCCeEEEEEEEeC-Ccee-EE
Q psy12422          1 MQNVIKVKVGST--KPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKP-----EDSGEYKCVATNK-HGTD-ET   69 (356)
Q Consensus         1 g~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~-----~D~G~Y~C~a~n~-~g~~-~~   69 (356)
                      |..+.|.|....  .+.+.|.|.|||..+...  .+.....+|  +|.|.++..     -|.|.|+|.|.-. .|.. +.
T Consensus        54 ~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg--Sl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr  131 (1381)
T KOG4221|consen   54 GSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG--SLYISSVLASKHNKVDEGVYQCLATVEDVGSILSR  131 (1381)
T ss_pred             ccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCC--ceeEeeecccccccccCceEEEEEEccccceeecc
Confidence            457899999833  357899999999887642  333446666  677777665     7899999999765 4433 44


Q ss_pred             EEEEEEeccccchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCC--Cce--EEEEeecccccc
Q psy12422         70 NCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDT--GRT--TTQMSTLSSNYS  143 (356)
Q Consensus        70 ~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~  143 (356)
                      .+.|.+.....  .........+..|+.+.|.|.++  |.|.+.|.+++..+.........  +..  ......+.+.|.
T Consensus       132 ~a~v~~a~~~~--f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yr  209 (1381)
T KOG4221|consen  132 TAKVALAGLAD--FALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYR  209 (1381)
T ss_pred             eEEEEecccCc--cccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEE
Confidence            56666654322  22334455678899999999988  77789999998866544322111  111  111333344455


Q ss_pred             ccccccCCCccceeeeeeccccCCCCCcccccceeeecCC-CCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEE
Q psy12422        144 SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPP-DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS  222 (356)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~  222 (356)
                      |...+.                   .....+...++.+.. ........|...+....+.+|+++.|.|.+.|.|.|.|.
T Consensus       210 c~vt~g-------------------~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~  270 (1381)
T KOG4221|consen  210 CVVTGG-------------------ASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVK  270 (1381)
T ss_pred             EEEecC-------------------CcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceE
Confidence            544322                   222223444444431 111233346667788899999999999999999999999


Q ss_pred             EEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc----------------
Q psy12422        223 WTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL----------------  286 (356)
Q Consensus       223 W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~----------------  286 (356)
                      |.+||..+..++ ..+.. .+...|.|.+++.+|+|.|+|+|.|......+.+.+++..+|.+.                
T Consensus       271 Wlrng~~i~~ds-~rivl-~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~  348 (1381)
T KOG4221|consen  271 WLRNGEKISVDS-YRIVL-VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEF  348 (1381)
T ss_pred             EeeCCeeeeecc-eEEEE-ecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeE
Confidence            999999998766 33332 233589999999999999999999955544444444433223222                


Q ss_pred             ----------eeEEeC--------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422        287 ----------DLKYKN--------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       287 ----------~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  334 (356)
                                .+.|.+              ..+.|+|--+...|+|.|+|.|.|..|.+.+.+.|.|...|.
T Consensus       349 ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~  420 (1381)
T KOG4221|consen  349 ECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA  420 (1381)
T ss_pred             eCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCc
Confidence                      334433              223499999999999999999999999999998886666543

>KOG4222|consensus

Probab=99.96  E-value=1.4e-28  Score=220.48  Aligned_cols=302  Identities=24%  Similarity=0.361  Sum_probs=209.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCe-EEEEEeeC--CCCCCeEEEEEEEeCCceeEEE-EEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGV-VSMEIIDC--KPEDSGEYKCVATNKHGTDETN-CVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~-~~L~i~~~--~~~D~G~Y~C~a~n~~g~~~~~-~~l   73 (356)
                      |+.++|.|.+.|.|+|+|+|||+|+.+...   ..++...++. +-|++..-  ...|.|.|.|.|.|..|.+.+. ..|
T Consensus        46 ~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L  125 (1281)
T KOG4222|consen   46 GEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSRGASL  125 (1281)
T ss_pred             CCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccceeeecCceE
Confidence            678999999999999999999999755432   2334455552 23333211  1239999999999999988654 444


Q ss_pred             EEeccccchhhhhhcccccccCccceeeeccc---CCceeeecccccccCCc--ccc--CCCCceEE--EEeeccccccc
Q psy12422         74 IVESEEESKEQQELAHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYS--SHT--DDTGRTTT--QMSTLSSNYSS  144 (356)
Q Consensus        74 ~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~--~~~--~~~~~~~~--~~~~~~~~~~~  144 (356)
                      .+......+..... ...+..|+.+.++|.-.   |.|.+.|.+++......  ...  ...+...+  ....+.|.|.|
T Consensus       126 ~vavlrddfrv~pr-d~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~C  204 (1281)
T KOG4222|consen  126 IVAVLRDDFRVSPR-DVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYAC  204 (1281)
T ss_pred             EEEEechhcccCcc-cccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeee
Confidence            44433333332222 25677899999999876   89999999998877611  111  11111111  12333444554


Q ss_pred             cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEE
Q psy12422        145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWT  224 (356)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~  224 (356)
                      +..                   +......+....+.+     ..+|.|...+.+..+..|..+.+.|.+.|.|.|.++|.
T Consensus       205 Vat-------------------NmvG~ReS~~A~lsv-----~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwk  260 (1281)
T KOG4222|consen  205 VAT-------------------NMVGERESIPARLSV-----QEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWK  260 (1281)
T ss_pred             eec-------------------ccccccccccceeee-----ccCCccccccccceeecccccccccccCCCCCCceeee
Confidence            443                   333344445555555     77899999999999999999999999999999999999


Q ss_pred             ECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc------------------
Q psy12422        225 KNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL------------------  286 (356)
Q Consensus       225 ~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~------------------  286 (356)
                      +++..++.. ++.+..+..  +|.|.+++..|.|.|.|.|.|.+|...+...+++..++...                  
T Consensus       261 k~~~~~P~~-ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc  337 (1281)
T KOG4222|consen  261 KDDPSLPRS-RYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPC  337 (1281)
T ss_pred             ccCCCCCcc-ceeeeeccc--cccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeee
Confidence            988777654 334444433  89999999999999999999999998887777733322211                  


Q ss_pred             --------eeEEeC----------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy12422        287 --------DLKYKN----------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR  330 (356)
Q Consensus       287 --------~~~~~~----------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  330 (356)
                              .+.|.+                      ..+.|+|.+++..|.|.|.|...+..|+......|.+.
T Consensus       338 ~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt  411 (1281)
T KOG4222|consen  338 ETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQT  411 (1281)
T ss_pred             ecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEE
Confidence                    112211                      23589999999999999999999998887665555443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.96  E-value=3.1e-27  Score=197.85  Aligned_cols=248  Identities=16%  Similarity=0.158  Sum_probs=157.3

Q ss_pred             CCceEEEEEe-----ccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVG-----STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~-----~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      ||.+.|.|.+     .|.|.+.++|+|+|....   ......++. .|.|.++..+|+|.|+|.++|..|....++.|.|
T Consensus        41 ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g~-~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V  116 (326)
T PHA02785         41 NEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNGS-NMLILNPTQSDSGIYICITKNETYCDMMSLNLTI  116 (326)
T ss_pred             CCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCCc-eEEEcccCcccCeEEEEEEECCCcceEEEEEEEE
Confidence            7899999997     689999999999985422   223333443 5789999999999999999999988888888888


Q ss_pred             eccccchhhhhhcccccccCccceeeec-------ccCCceeeecccccccCCccccCC-CCc--eEEEEeecccccccc
Q psy12422         76 ESEEESKEQQELAHNFLYSGDRKYIEKH-------IRPAPAIITTRQEIKSSYSSHTDD-TGR--TTTQMSTLSSNYSSS  145 (356)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~g~~~~l~c~-------~~p~p~i~w~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~  145 (356)
                      .............+..+.+|..+.+.|.       ..|.|.+.|+++.. ......... .+.  .......+.|.|.|.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~  195 (326)
T PHA02785        117 VSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCV  195 (326)
T ss_pred             EecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCcceEecCCCeEEEeecChhhCeEEEEE
Confidence            6543211111122344678999999997       23778899986432 111100000 111  111233444555555


Q ss_pred             ccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCC---eEE
Q psy12422        146 TNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP---RVS  222 (356)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p---~i~  222 (356)
                      +.+..                +...........+.+.  ....||.+. .+....+..|++++|.|.+.|.|++   .+.
T Consensus       196 ~~n~~----------------g~~~~~~t~~v~l~V~--~~~~pp~~~-~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~  256 (326)
T PHA02785        196 LKYIY----------------GDKTYNVTRIVKLEVR--DRIIPPTMQ-LPEGVVTSIGSNLTIACRVSLRPPTTDADVF  256 (326)
T ss_pred             EEecc----------------CCEEEeEEEEEEEEEe--ccCCCceec-CCCcEEecCCCcEEEEEEEECCCCCCCceEE
Confidence            43322                2111111111222221  123455543 3456778889999999999998864   799


Q ss_pred             EEECCEEccCCC-----ceeEEE-----e---CCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        223 WTKNGQPLNSSN-----ILDLKY-----K---NGVASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       223 W~~~g~~~~~~~-----~~~~~~-----~---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      |++||..+...+     ++....     +   .....|+|.+++.+|+|.|+|.|.|..|...
T Consensus       257 W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        257 WISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK  319 (326)
T ss_pred             EEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence            999999885431     111111     0   0135899999999999999999999886443

>KOG4222|consensus

Probab=99.95  E-value=2.4e-27  Score=212.58  Aligned_cols=304  Identities=23%  Similarity=0.328  Sum_probs=216.3

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEccc--CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE-EEEEEe
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN-CVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~v~   76 (356)
                      ||.++|.|.- .|+|.|.+.|.|||+++..  .......++|  .|.|.+++..|+|.|.|.+.|..|..++. ++|.|.
T Consensus       146 ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG--~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~  223 (1281)
T KOG4222|consen  146 GEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG--NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ  223 (1281)
T ss_pred             cceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC--cEEEeccccCCCceeeeeecccccccccccceeeec
Confidence            7899999987 8999999999999999973  3344456677  79999999999999999999999987654 777777


Q ss_pred             ccccchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCC----CceEEEEeeccccccccccccC
Q psy12422         77 SEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDT----GRTTTQMSTLSSNYSSSTNNAT  150 (356)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      ..+-.  ........+..|..+.+.|.+.  |.|.+.|-+++...+........    .+....+..+.+.|.|...+.+
T Consensus       224 e~P~f--~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~v  301 (1281)
T KOG4222|consen  224 EKPWF--WKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLV  301 (1281)
T ss_pred             cCCcc--ccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccc
Confidence            65322  2223445567788899999998  77779999977666544332222    1222234445566777664443


Q ss_pred             CCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc
Q psy12422        151 SPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~  230 (356)
                      ...+                    ....+.+     ..+|.|...+.+..+..|..++|.|.+.|+|+|.+.|.+.|..-
T Consensus       302 G~l~--------------------asa~ltV-----~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~  356 (1281)
T KOG4222|consen  302 GGLE--------------------ASATLTV-----QAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQD  356 (1281)
T ss_pred             cccc--------------------cccceEE-----ecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcce
Confidence            3221                    2233344     67899999999999999999999999999999999999965432


Q ss_pred             cC------CCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEec-------CCCCccc-----------
Q psy12422        231 NS------SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP-------LNSSNIL-----------  286 (356)
Q Consensus       231 ~~------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p-------~~~~~~~-----------  286 (356)
                      -.      ..+........ .+|+|.+++..|.|.|.|...+..|.......+..       -.++.|.           
T Consensus       357 llf~~~p~~~~~r~svs~~-g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~  435 (1281)
T KOG4222|consen  357 LLFSASPPSSNGRGSVSPT-GTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVG  435 (1281)
T ss_pred             ecccCCCCCcCccceecCC-CCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccC
Confidence            11      11122222222 38999999999999999999888886543322220       0111111           


Q ss_pred             ---------------eeEEe---------------CCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422        287 ---------------DLKYK---------------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       287 ---------------~~~~~---------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  334 (356)
                                     .+.|.               .....|+|.++...|.|.|+|.|.+..|+..-+++|.|...-.
T Consensus       436 s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~  513 (1281)
T KOG4222|consen  436 STASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGS  513 (1281)
T ss_pred             cccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCc
Confidence                           11111               1347899999999999999999999999999999999887643

>KOG4194|consensus

Probab=99.95  E-value=6.6e-27  Score=197.43  Aligned_cols=225  Identities=25%  Similarity=0.461  Sum_probs=170.2

Q ss_pred             CCceEEEEEecc--CCCCeeEEeeCCEEccc----C--CeeEEecC--------CeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGST--KPPPTVKWYKGNRELSK----R--DYSMSYSD--------GVVSMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g--~p~~~v~W~k~g~~l~~----~--~~~~~~~~--------~~~~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |++++|+|.+.+  .-+-.+.|-|+.+.++.    +  .+.....+        ....|.+.+|+..|.|.|+|.++|..
T Consensus       518 g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~F  597 (873)
T KOG4194|consen  518 GENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHF  597 (873)
T ss_pred             ccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEeccc
Confidence            789999999955  34458999998775432    1  11111111        12379999999999999999999999


Q ss_pred             ceeEE-EEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecccccc
Q psy12422         65 GTDET-NCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYS  143 (356)
Q Consensus        65 g~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (356)
                      |...+ .+++.|                                                                    
T Consensus       598 GStysqk~KltV--------------------------------------------------------------------  609 (873)
T KOG4194|consen  598 GSTYSQKAKLTV--------------------------------------------------------------------  609 (873)
T ss_pred             CcchhheeEEEe--------------------------------------------------------------------
Confidence            88743 456655                                                                    


Q ss_pred             ccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEE
Q psy12422        144 SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSW  223 (356)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W  223 (356)
                                                                 ...|.|...|.+.++..|+...|.|.+.|.|.|+|.|
T Consensus       610 -------------------------------------------~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIaw  646 (873)
T KOG4194|consen  610 -------------------------------------------NQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAW  646 (873)
T ss_pred             -------------------------------------------eccCccccCcccceeecccceeeeeeccCCCCcceee
Confidence                                                       3346677778888999999999999999999999999


Q ss_pred             EECCEE-ccCCC--ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc--------------
Q psy12422        224 TKNGQP-LNSSN--ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL--------------  286 (356)
Q Consensus       224 ~~~g~~-~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~--------------  286 (356)
                      .|+|.. .+...  +.+...+..  .+.|.++..+|+|.|+|.|.|.+|+.++.+.+++...|...              
T Consensus       647 qkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~  724 (873)
T KOG4194|consen  647 QKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETL  724 (873)
T ss_pred             hhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceE
Confidence            997765 44322  222222333  78999999999999999999999999988888733222111              


Q ss_pred             -------------eeEEe---------------CCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCC
Q psy12422        287 -------------DLKYK---------------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLG  338 (356)
Q Consensus       287 -------------~~~~~---------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~  338 (356)
                                   .+.|.               .+...|.+++...+|+|.|+|+.+|..|......++.|...+.....
T Consensus       725 vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~~~S  804 (873)
T KOG4194|consen  725 VLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKCRMS  804 (873)
T ss_pred             EEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCcccc
Confidence                         22332               25678999999999999999999999999888888888888877644

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.91  E-value=5.4e-23  Score=161.63  Aligned_cols=152  Identities=17%  Similarity=0.262  Sum_probs=111.5

Q ss_pred             CCceEEEEEeccCCC-----------CeeEEeeCCEEc--cc-CCee-------EEecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVGSTKPP-----------PTVKWYKGNREL--SK-RDYS-------MSYSDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-----------~~v~W~k~g~~l--~~-~~~~-------~~~~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      ||+|.|.|.+.+.|+           +.|.|+|++...  .. +.+.       ....+....|.|.+++.+|+|.|+|.
T Consensus        37 Ge~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~C~  116 (227)
T PHA02826         37 GDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYICT  116 (227)
T ss_pred             CCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEEEEE
Confidence            899999999977553           489999987652  11 1110       01111223899999999999999999


Q ss_pred             EEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecc
Q psy12422         60 ATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLS  139 (356)
Q Consensus        60 a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (356)
                      |+|..+.....+.|.|...                                                             
T Consensus       117 a~N~~~~~~~~i~L~V~~~-------------------------------------------------------------  135 (227)
T PHA02826        117 ISSGNICEESTIRLTFDSG-------------------------------------------------------------  135 (227)
T ss_pred             EEECCcceEEEEEEEEecC-------------------------------------------------------------
Confidence            9998888777777766311                                                             


Q ss_pred             ccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEc-----
Q psy12422        140 SNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVK-----  214 (356)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~-----  214 (356)
                                                                        +      .+..+.+|+.+.|.|.+.     
T Consensus       136 --------------------------------------------------~------~~~~~~~G~~v~L~C~~~~~~~~  159 (227)
T PHA02826        136 --------------------------------------------------T------INYQFNSGKDSKLHCYGTDGISS  159 (227)
T ss_pred             --------------------------------------------------C------ccceEecCCCEEEEeeCCCCccc
Confidence                                                              0      012356799999999985     


Q ss_pred             CCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        215 GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       215 g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      ++|.|.++|+|||.++....++...  .+..+|.|.+++.+|+|.|+|.|.....+.
T Consensus       160 ~~p~p~I~WyKng~~l~~~~r~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~  214 (227)
T PHA02826        160 TFKDYTLTWYKNGNIVLYTDRIQLR--NNNSTLVIKSATHDDSGIYTCNLRFNKNSN  214 (227)
T ss_pred             cCCCceEEEEECCEECCCCCCEEEe--CCCCEEEECcCCHHhCEEEEEEEEEeECCE
Confidence            3467899999999999866654433  333489999999999999999999875443

>KOG4194|consensus

Probab=99.89  E-value=1.4e-22  Score=171.63  Aligned_cols=164  Identities=27%  Similarity=0.439  Sum_probs=135.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEE-cccC--Ce-eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRE-LSKR--DY-SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~-l~~~--~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+.+.|.|.+.|+|.|+|.|-|+|.. ++..  ++ .+...+.  .+.|.+|..+|+|.|+|.|.|..|..++.+.|+|.
T Consensus       627 g~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~  704 (873)
T KOG4194|consen  627 GQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL  704 (873)
T ss_pred             ccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEe
Confidence            78899999999999999999998766 6642  22 2223333  78899999999999999999999999999999996


Q ss_pred             ccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccce
Q psy12422         77 SEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKI  156 (356)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      +.                                                                              
T Consensus       705 e~------------------------------------------------------------------------------  706 (873)
T KOG4194|consen  705 ET------------------------------------------------------------------------------  706 (873)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            43                                                                              


Q ss_pred             eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC-CeEEEEECCEEccCCCc
Q psy12422        157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE-PRVSWTKNGQPLNSSNI  235 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~~g~~~~~~~~  235 (356)
                                                       |.+..+..++.|..|+++.|.|.+++.|. |.+.|+|+++++....+
T Consensus       707 ---------------------------------p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~r  753 (873)
T KOG4194|consen  707 ---------------------------------PSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITER  753 (873)
T ss_pred             ---------------------------------CcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeec
Confidence                                             34444466778999999999999999987 99999999988877666


Q ss_pred             eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422        236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       236 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      ..+...+  ..|++++...+|+|.|+|+..|..|.......+..
T Consensus       754 h~f~d~d--Qllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~  795 (873)
T KOG4194|consen  754 HTFPDGD--QLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLV  795 (873)
T ss_pred             ccCCCCC--eEEEEEehhhhhcceEEEEEEeeccceeeEEEEEE
Confidence            5554444  48999999999999999999999998877766653

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.82  E-value=2.8e-19  Score=122.24  Aligned_cols=94  Identities=21%  Similarity=0.366  Sum_probs=82.8

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |.|...+.+..+..|+.+.|.|.+.|.|+|.+.|+|+|..+....++.+......+.|.|.++..+|+|.|+|.|.|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            45666778889999999999999999999999999999999877777766666678999999999999999999999999


Q ss_pred             ceEEEEEEecCCCC
Q psy12422        270 TAETKCKLTPLNSS  283 (356)
Q Consensus       270 ~~~~~~~l~p~~~~  283 (356)
                      .+.+++.|.+...|
T Consensus        81 ~~~~~~~l~V~~~P   94 (98)
T cd05762          81 SRQAQVNLTVVDKP   94 (98)
T ss_pred             ceeEEEEEEEecCC
Confidence            99999999855443

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.80  E-value=5.7e-19  Score=120.75  Aligned_cols=82  Identities=16%  Similarity=0.253  Sum_probs=72.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|.|+|.+.|+|||++|..+ ++.+...+..+.|+|.++..+|+|.|+|.|.|..|...+++.|.|.+.|
T Consensus        15 G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P   94 (98)
T cd05762          15 GESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP   94 (98)
T ss_pred             CCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence            789999999999999999999999999754 4555556667799999999999999999999999999999999999876


Q ss_pred             cch
Q psy12422         80 ESK   82 (356)
Q Consensus        80 ~~~   82 (356)
                      .+|
T Consensus        95 ~pP   97 (98)
T cd05762          95 DPP   97 (98)
T ss_pred             CCC
Confidence            543

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.79  E-value=9.5e-18  Score=140.82  Aligned_cols=204  Identities=15%  Similarity=0.209  Sum_probs=117.8

Q ss_pred             ccccCccceeeecc-----c--CCceeeecccccccCCccccCCCCc-eE--EEEeeccccccccccccCCCccceeeee
Q psy12422         91 FLYSGDRKYIEKHI-----R--PAPAIITTRQEIKSSYSSHTDDTGR-TT--TQMSTLSSNYSSSTNNATSPSKKITRRM  160 (356)
Q Consensus        91 ~~~~g~~~~l~c~~-----~--p~p~i~w~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (356)
                      ...+|+.+.+.|..     .  |.+.+.|++++......... ..+. ..  .....++|.|.|.+.+..          
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~-~~g~~l~i~~~~~~DsG~Y~C~a~N~~----------  105 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPI-DNGSNMLILNPTQSDSGIYICITKNET----------  105 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEc-cCCceEEEcccCcccCeEEEEEEECCC----------
Confidence            45679999999986     2  66789999986432111000 0111 00  112233444444443221          


Q ss_pred             eccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEE-----EcCCCCCeEEEEECCEEccCCCc
Q psy12422        161 NSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAV-----VKGDPEPRVSWTKNGQPLNSSNI  235 (356)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~-----~~g~p~p~i~W~~~g~~~~~~~~  235 (356)
                                .......++.+..   ..++.+...+....+.+|..+.|.|.     ..+.|+|.|+|+++.. + ...+
T Consensus       106 ----------g~~~~s~~L~V~~---~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r  170 (326)
T PHA02785        106 ----------YCDMMSLNLTIVS---VSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKR  170 (326)
T ss_pred             ----------cceEEEEEEEEEe---cCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcc
Confidence                      1111222333211   11222222233456779999999997     2467899999988653 2 2222


Q ss_pred             eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE----EEEec---CCCCccc----------------------
Q psy12422        236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK----CKLTP---LNSSNIL----------------------  286 (356)
Q Consensus       236 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~----~~l~p---~~~~~~~----------------------  286 (356)
                      +.. ..  ...|.|.+++.+|+|.|+|.|.|..|.....    +.+.+   ..+|.+.                      
T Consensus       171 ~~~-~~--~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~  247 (326)
T PHA02785        171 LKQ-RT--PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLR  247 (326)
T ss_pred             eEe-cC--CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECC
Confidence            221 11  2489999999999999999999998875432    22221   1111000                      


Q ss_pred             ------eeEEeCC------------------------------eEEEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy12422        287 ------DLKYKNG------------------------------VASLQIQEVFPEDEGVYVCTATNSLGTAET  323 (356)
Q Consensus       287 ------~~~~~~~------------------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  323 (356)
                            .+.|..+                              ...|+|.+|+.+|+|.|+|.|.|..|....
T Consensus       248 P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~  320 (326)
T PHA02785        248 PPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISKT  320 (326)
T ss_pred             CCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceEe
Confidence                  2333221                              247999999999999999999999855444

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.78  E-value=1.2e-18  Score=111.93  Aligned_cols=73  Identities=30%  Similarity=0.495  Sum_probs=63.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.|+|+|++..+..+.+.....++  +|.|.+++.+|+|.|+|.|.|..|.+.+++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG--SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC--EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            789999999999999999999999988655433334445  7999999999999999999999999999988864

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.78  E-value=1.2e-18  Score=113.16  Aligned_cols=73  Identities=29%  Similarity=0.445  Sum_probs=63.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.|+|+|+|.++..........++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         2 G~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG--TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC--eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            789999999999999999999999998765433333444  8999999999999999999999999999888865

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.78  E-value=7.1e-18  Score=114.61  Aligned_cols=90  Identities=30%  Similarity=0.491  Sum_probs=79.8

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      ||.+...+.+..+.+|+.+.|.|.+.|+|.|.+.|+++|..+....++.+......+.|.|.+++.+|+|.|+|.|.|..
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   82 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE   82 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence            57777788889999999999999999999999999999999877666666555556799999999999999999999999


Q ss_pred             CceEEEEEEe
Q psy12422        269 GTAETKCKLT  278 (356)
Q Consensus       269 g~~~~~~~l~  278 (356)
                      |....++.|+
T Consensus        83 G~~~~~~~l~   92 (92)
T cd05747          83 GKQEAQFTLT   92 (92)
T ss_pred             CCEeEEEEeC
Confidence            9999888763

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.78  E-value=2.4e-18  Score=110.92  Aligned_cols=72  Identities=25%  Similarity=0.344  Sum_probs=61.3

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEccc--CCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSK--RDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~--~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |.|.|.+.|.|.|.|+|||||+.+..  .++.+.. .++..+|.|.+++.+|+|.|+|.|.|..|.+...+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            68999999999999999999999873  2333333 345568999999999999999999999999999988875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.77  E-value=3.6e-18  Score=116.79  Aligned_cols=76  Identities=22%  Similarity=0.396  Sum_probs=64.2

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeCCEEcccCCeeEEecC------CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKGNRELSKRDYSMSYSD------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~------~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   73 (356)
                      |+++.|.|.+.| .|+|.+.|+|||.+|...........      ....|.|..++.+|+|.|+|.|.|..|.++..+.|
T Consensus        18 G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L   97 (101)
T cd04975          18 GENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFEL   97 (101)
T ss_pred             CCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEE
Confidence            789999999999 89999999999999975433222222      13589999999999999999999999999999998


Q ss_pred             EEe
Q psy12422         74 IVE   76 (356)
Q Consensus        74 ~v~   76 (356)
                      .|.
T Consensus        98 ~V~  100 (101)
T cd04975          98 YVN  100 (101)
T ss_pred             EEE
Confidence            875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.77  E-value=5.6e-18  Score=112.89  Aligned_cols=75  Identities=25%  Similarity=0.363  Sum_probs=65.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|+|.++|+|+|+++...  ++.+........|.|.++..+|+|.|+|.|.|..|.+..++.|.|
T Consensus        10 G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894          10 GNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             CCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence            789999999999999999999999999753  344445555678999999999999999999999999988888764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.77  E-value=4.4e-18  Score=114.04  Aligned_cols=81  Identities=23%  Similarity=0.353  Sum_probs=68.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEe-c---CCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSY-S---DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~-~---~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      ||+++|.|.+.|.|++.++|+|++..+...  ++.+.. .   .....|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            899999999999999999999999988643  343332 1   1225899999999999999999999999999999999


Q ss_pred             Eeccccc
Q psy12422         75 VESEEES   81 (356)
Q Consensus        75 v~~~~~~   81 (356)
                      |.++|.+
T Consensus        81 V~~~P~~   87 (88)
T cd05735          81 VQEPPDP   87 (88)
T ss_pred             EeCCCCC
Confidence            9987554

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.76  E-value=4.4e-18  Score=111.09  Aligned_cols=73  Identities=25%  Similarity=0.379  Sum_probs=62.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC--eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.|+|+|||.++....  ......++  .|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            7999999999999999999999999986532  12223334  7999999999999999999999999999988887

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.76  E-value=8.1e-18  Score=112.86  Aligned_cols=86  Identities=29%  Similarity=0.534  Sum_probs=73.6

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      ||.+...+.+..+.+|+.+.|.|.+.|+|.|.++|+|++..+....++  ...+  ..|.|.+++.+|+|.|+|.|.|..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~~~--~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SMSG--AVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ecCC--CEEEECcCChhhCEEEEEEEEcCC
Confidence            477777888889999999999999999999999999999877654332  2223  389999999999999999999999


Q ss_pred             CceEEEEEEe
Q psy12422        269 GTAETKCKLT  278 (356)
Q Consensus       269 g~~~~~~~l~  278 (356)
                      |.....+.|.
T Consensus        77 G~~~~~~~l~   86 (88)
T cd05851          77 GKDKHQARVY   86 (88)
T ss_pred             CceEEEEEEE
Confidence            9999888775

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.76  E-value=5.9e-18  Score=110.19  Aligned_cols=74  Identities=19%  Similarity=0.276  Sum_probs=62.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|+|.|+|+|+|||+++...  .......++  .|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            789999999999999999999999998632  112223333  68999999999999999999999999999999873

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.76  E-value=5.2e-18  Score=109.53  Aligned_cols=72  Identities=28%  Similarity=0.339  Sum_probs=60.6

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecC-CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |.|.|.+.|.|.|.|+|+|++.++...  ++.+...+ +...|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            689999999999999999999999753  23333232 4457999999999999999999999999999988865

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.75  E-value=3.7e-17  Score=108.94  Aligned_cols=81  Identities=25%  Similarity=0.476  Sum_probs=71.0

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|++++.++... .++.+......+.|.|.++..+|+|.|+|.|.|..|.+.+++.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            467889999999999999999999999999999764 3455555555679999999999999999999999999999888


Q ss_pred             Ee
Q psy12422        277 LT  278 (356)
Q Consensus       277 l~  278 (356)
                      |.
T Consensus        84 l~   85 (86)
T cd05894          84 VK   85 (86)
T ss_pred             EE
Confidence            74

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.75  E-value=3.1e-17  Score=111.36  Aligned_cols=83  Identities=36%  Similarity=0.528  Sum_probs=72.3

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      |...++.+|+++.|.|.+.|.|.|.+.|+|+|..+....++.+... +....|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVD   87 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence            4557899999999999999999999999999999987766655544 345689999999999999999999999999988


Q ss_pred             EEEe
Q psy12422        275 CKLT  278 (356)
Q Consensus       275 ~~l~  278 (356)
                      +.+.
T Consensus        88 ~~v~   91 (92)
T cd05737          88 VTVS   91 (92)
T ss_pred             EEEe
Confidence            8774

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.75  E-value=1.4e-17  Score=106.98  Aligned_cols=71  Identities=28%  Similarity=0.491  Sum_probs=59.9

Q ss_pred             ceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          3 NVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         3 ~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      +|.|.|.+.|.|.|.++|+|+|..+....+.....++  .|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH--NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC--CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4899999999999999999999988755433333344  5788899999999999999999999999888864

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.75  E-value=1.3e-17  Score=114.34  Aligned_cols=76  Identities=26%  Similarity=0.398  Sum_probs=64.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEec-------CCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYS-------DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~-------~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   73 (356)
                      |+.+.|.|.+.|+|+|.++|||||++|..+.......       ....+|+|.+++.+|+|.|+|.|.|..|.++.++.|
T Consensus        18 ~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l   97 (101)
T cd05859          18 HEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFAL   97 (101)
T ss_pred             CCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEE
Confidence            5789999999999999999999999997654322211       223589999999999999999999999999999998


Q ss_pred             EEe
Q psy12422         74 IVE   76 (356)
Q Consensus        74 ~v~   76 (356)
                      .|.
T Consensus        98 ~V~  100 (101)
T cd05859          98 QIQ  100 (101)
T ss_pred             EEE
Confidence            875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.75  E-value=9.5e-18  Score=104.91  Aligned_cols=66  Identities=24%  Similarity=0.349  Sum_probs=56.7

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      ++|.|.+.|.|+|.++|||||+++...       .....|.|.++..+|+|.|+|.|.|..|..++++.+.|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc-------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            579999999999999999999999632       122389999999999999999999999988777777653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.74  E-value=2.6e-17  Score=107.01  Aligned_cols=73  Identities=26%  Similarity=0.346  Sum_probs=63.5

Q ss_pred             ceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          3 NVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         3 ~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      ++.|.|.+.|.|.|.+.|+|+|..+... ++.+...+....|.|.++..+|+|.|+|.|.|..|.++.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            4789999999999999999999998543 444555566779999999999999999999999999998888765

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.74  E-value=3.4e-17  Score=111.30  Aligned_cols=89  Identities=42%  Similarity=0.736  Sum_probs=82.5

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+++|..+....++.+......++|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            45667778899999999999999999999999999999999998888888888999999999999999999999999999


Q ss_pred             ceEEEEEEe
Q psy12422        270 TAETKCKLT  278 (356)
Q Consensus       270 ~~~~~~~l~  278 (356)
                      ....++.|.
T Consensus        81 ~~~~~~~l~   89 (90)
T PF07679_consen   81 EATASVNLT   89 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            999988874

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.74  E-value=2.1e-17  Score=107.04  Aligned_cols=73  Identities=30%  Similarity=0.520  Sum_probs=63.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.++|+|++..+....+.....++  +|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG--SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC--eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            789999999999999999999999998765433333444  7999999999999999999999999999888865

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.74  E-value=4.8e-17  Score=111.25  Aligned_cols=82  Identities=23%  Similarity=0.352  Sum_probs=69.0

Q ss_pred             CceeecCCCeEEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeC-----CEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        197 TDKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKN-----GVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ..+.+.+|+++.|.|.+.| .|+|.+.|+|||.++.......+....     ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4568999999999999999 888999999999999865544333221     1468999999999999999999999999


Q ss_pred             eEEEEEEe
Q psy12422        271 AETKCKLT  278 (356)
Q Consensus       271 ~~~~~~l~  278 (356)
                      ...++.|.
T Consensus        91 ~~~t~~L~   98 (101)
T cd04975          91 KSLTFELY   98 (101)
T ss_pred             EEEEEEEE
Confidence            98888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.73  E-value=3.7e-17  Score=106.04  Aligned_cols=72  Identities=29%  Similarity=0.358  Sum_probs=60.8

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |.|.|.+.|.|.|.|.|+|+|..+...  ++.+.. ..+..+|.|.+++.+|+|.|+|.|.|..|.+...+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            589999999999999999999999743  333332 345568999999999999999999999999999888865

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.73  E-value=2.3e-17  Score=108.17  Aligned_cols=76  Identities=20%  Similarity=0.224  Sum_probs=63.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.|+|+++|.++...............|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   76 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV   76 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence            7999999999999999999999999986543211122222379999999999999999999999999999888873

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.73  E-value=3.5e-17  Score=106.89  Aligned_cols=73  Identities=26%  Similarity=0.393  Sum_probs=57.5

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE--EEEEEEe
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET--NCVVIVE   76 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~--~~~l~v~   76 (356)
                      |+|.|.+.|.|.|.|+|||+|.++...........+...|.|.+++.+|+|.|+|.|.|..|...+  .+.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            689999999999999999999998654322222222338999999999999999999999998754  4555554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.73  E-value=3.1e-17  Score=105.36  Aligned_cols=70  Identities=23%  Similarity=0.419  Sum_probs=59.6

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      +.|.|.+.|.|.|.|.|+|++.++...+......+  .+|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNN--KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCC--CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            57999999999999999999988865443332233  38999999999999999999999999999888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.73  E-value=6.6e-17  Score=107.48  Aligned_cols=77  Identities=16%  Similarity=0.327  Sum_probs=63.5

Q ss_pred             CceEEEEEeccCCCC--eeEEeeCCEEcccC----CeeE-EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          2 QNVIKVKVGSTKPPP--TVKWYKGNRELSKR----DYSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         2 ~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~----~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |+++|.|.+.|+|.|  .++|+|||+++...    ++.. .......+|.|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            689999999999987  58999999998642    2211 2222335899999999999999999999999999999999


Q ss_pred             Eecc
Q psy12422         75 VESE   78 (356)
Q Consensus        75 v~~~   78 (356)
                      |.++
T Consensus        81 V~~~   84 (85)
T cd05854          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            9865

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.73  E-value=1.6e-16  Score=107.45  Aligned_cols=84  Identities=21%  Similarity=0.399  Sum_probs=70.4

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      ++.+..+.+|+.+.|.|.+.|+|.|.+.|+++|..+................|.|.+++.+|.|.|+|.|.|..|...++
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~   85 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS   85 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence            34556699999999999999999999999999998865544333333445789999999999999999999999999988


Q ss_pred             EEEe
Q psy12422        275 CKLT  278 (356)
Q Consensus       275 ~~l~  278 (356)
                      +.|.
T Consensus        86 ~~L~   89 (90)
T cd04972          86 VQVT   89 (90)
T ss_pred             EEEe
Confidence            8774

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.73  E-value=5.5e-17  Score=110.14  Aligned_cols=75  Identities=27%  Similarity=0.406  Sum_probs=64.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEec-CCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.+.|||+|.++... ++.+... +...+|.|.+++.+|+|.|+|.|.|..|.+...+.|.|
T Consensus        16 G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   92 (92)
T cd05737          16 GKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV   92 (92)
T ss_pred             CCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence            789999999999999999999999999754 3444433 34568999999999999999999999999988887764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.72  E-value=5.9e-17  Score=108.66  Aligned_cols=73  Identities=30%  Similarity=0.503  Sum_probs=62.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.++|+|++.++.... .+...++  .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        16 G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~~~~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          16 GQNVTLECFALGNPVPVIRWRKILEPMPATA-EISMSGA--VLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ   88 (88)
T ss_pred             CCcEEEEEEecccCCCEEEEEECCcCCCCCC-EEecCCC--EEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence            7899999999999999999999998886543 2333333  79999999999999999999999999999988873

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.72  E-value=1.1e-16  Score=103.06  Aligned_cols=72  Identities=25%  Similarity=0.487  Sum_probs=60.9

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|.|.+.|.|.|.|.|+|+|..+... .++.+..+ .+..+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD   74 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence            479999999999999999999998743 45544433 3345899999999999999999999999999988874

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.72  E-value=9.1e-17  Score=105.39  Aligned_cols=75  Identities=24%  Similarity=0.310  Sum_probs=64.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.|+|+|++..+... ++.+...++...|+|.+++.+|+|.|+|.|.|..|...+...+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            789999999999999999999999888654 444555566678999999999999999999999999877766554

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.71  E-value=9.1e-17  Score=110.06  Aligned_cols=77  Identities=27%  Similarity=0.425  Sum_probs=64.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.|.|+|+|..+...............|+|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus        18 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~   94 (95)
T cd05730          18 GQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFA   94 (95)
T ss_pred             CCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence            78999999999999999999999999875422222233334799999999999999999999999999999998863

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.71  E-value=9.5e-17  Score=104.19  Aligned_cols=73  Identities=33%  Similarity=0.590  Sum_probs=62.9

Q ss_pred             CCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       203 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +|+++.|.|.+.|+|.|.+.|+|+|..+....+.... ..  .+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~-~~--~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL-SS--GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc-cC--CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            6899999999999999999999999988765443322 22  3899999999999999999999999999988774

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.71  E-value=6.6e-17  Score=103.29  Aligned_cols=68  Identities=26%  Similarity=0.435  Sum_probs=57.7

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV   73 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   73 (356)
                      |.|.|.+.|.|.|.|+|+|+|.++..........++  .|.|.+++.+|+|.|+|.|.|..|.++.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG--YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC--EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            689999999999999999999998754332333343  79999999999999999999999999887766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.71  E-value=8.5e-17  Score=103.87  Aligned_cols=69  Identities=22%  Similarity=0.337  Sum_probs=57.1

Q ss_pred             EEEEeccCCCCeeEEeeCCEEcccCCeeE---E---ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          6 KVKVGSTKPPPTVKWYKGNRELSKRDYSM---S---YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         6 l~C~~~g~p~~~v~W~k~g~~l~~~~~~~---~---~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |.|.+.|+|.|.|+|||||++|..+++..   .   .......|.|.++..+|+|.|+|.|+|..|.+.+++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            68999999999999999999997654321   1   122345899999999999999999999999988877664

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.71  E-value=3.2e-16  Score=101.86  Aligned_cols=73  Identities=27%  Similarity=0.519  Sum_probs=65.4

Q ss_pred             eEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       206 ~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      .+.|.|.+.|.|.|.+.|+++|..+....++.+......+.|.|.++..+|+|.|+|.|.|..|.+..++.|.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK   73 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence            3689999999999999999999999777777666666678999999999999999999999999999988774

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.70  E-value=2.4e-16  Score=106.56  Aligned_cols=75  Identities=15%  Similarity=0.238  Sum_probs=63.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCe-eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.++|+|+|..+..... ..........|+|.+++.+|.|.|+|.|.|..|...+.+.|.|
T Consensus        15 G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v   90 (90)
T cd04972          15 GGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV   90 (90)
T ss_pred             CCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence            78999999999999999999999998865432 2233344568999999999999999999999999998888764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.70  E-value=1.6e-16  Score=101.84  Aligned_cols=70  Identities=30%  Similarity=0.461  Sum_probs=58.8

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      +.|.|.+.|.|+|.++|||||.++..+.. ....+  .+|.|.++..+|+|.|+|.|.|..|.....+.+.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~-~~~~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNR-TKKSG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE-EEcCC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            57999999999999999999999976532 22223  389999999999999999999999988777777653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.70  E-value=1.7e-16  Score=106.19  Aligned_cols=77  Identities=17%  Similarity=0.265  Sum_probs=62.9

Q ss_pred             CceEEEEEeccCCCC--eeEEeeCCEEcccCC----ee-EEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          2 QNVIKVKVGSTKPPP--TVKWYKGNRELSKRD----YS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         2 ~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~~----~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |+++|.|.+.|.|.|  .+.|+|||+++....    +. ........+|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            689999999999988  569999999986321    11 11222334899999999999999999999999999999999


Q ss_pred             Eecc
Q psy12422         75 VESE   78 (356)
Q Consensus        75 v~~~   78 (356)
                      |.++
T Consensus        81 V~~p   84 (85)
T cd04970          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            9875

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.70  E-value=1.9e-16  Score=101.78  Aligned_cols=72  Identities=29%  Similarity=0.493  Sum_probs=62.5

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+.+.|.|.+.|.|.|.|.|+|++..+....++.+.. +  .+|.|.+++.+|+|.|+|.|.|..|....+..|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~-~--g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD-D--GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC-C--CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            6789999999999999999999998887666554432 2  3799999999999999999999999999988874

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.70  E-value=4.6e-16  Score=106.75  Aligned_cols=89  Identities=22%  Similarity=0.470  Sum_probs=70.4

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC-----ceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-----ILDLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      |.|...+....+..|+.++|.|.+.|.|.|.++|++++..+....     ++........+.|.|.+++.+|+|.|+|.|
T Consensus         3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A   82 (97)
T cd05869           3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTA   82 (97)
T ss_pred             ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEE
Confidence            556555555556668999999999999999999999987765332     222233334468999999999999999999


Q ss_pred             EcCCCceEEEEEEe
Q psy12422        265 TNSLGTAETKCKLT  278 (356)
Q Consensus       265 ~n~~g~~~~~~~l~  278 (356)
                      .|..|.+..++.|.
T Consensus        83 ~N~~G~~~~~~~l~   96 (97)
T cd05869          83 SNTIGQDSQSMYLE   96 (97)
T ss_pred             ecCCCCeeEEEEEE
Confidence            99999999988874

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.70  E-value=2.7e-16  Score=105.48  Aligned_cols=75  Identities=23%  Similarity=0.387  Sum_probs=62.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCee--EEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYS--MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.++|||+|.++......  .........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         9 G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857           9 ANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             CCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence            789999999999999999999999998754321  222334457999999999999999999999999999888865

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.70  E-value=1.2e-16  Score=101.30  Aligned_cols=68  Identities=26%  Similarity=0.397  Sum_probs=56.5

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      +.|.|.+.|.|.|.++|||||+++..... . ..+  ..|.|.++..+|+|.|+|.|.|..|..+....+.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~-~-~~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT-F-KRG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE-E-ccC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            57999999999999999999999975432 2 222  37999999999999999999999998777666555

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.70  E-value=2.9e-16  Score=104.79  Aligned_cols=81  Identities=35%  Similarity=0.637  Sum_probs=70.1

Q ss_pred             ccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      ..|.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+....++..  .++  .|.|.+++.+|+|.|+|.|.|..|...+
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EAG--DLRITKLSLSDSGMYQCVAENKHGTIYA   79 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eCC--EEEEeeCCHHHCEEEEEEEECCCCeEEE
Confidence            345677899999999999999999999999999999876655433  333  7999999999999999999999999998


Q ss_pred             EEEEe
Q psy12422        274 KCKLT  278 (356)
Q Consensus       274 ~~~l~  278 (356)
                      ++.|.
T Consensus        80 ~~~l~   84 (85)
T cd05728          80 SAELA   84 (85)
T ss_pred             EEEEE
Confidence            88774

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.70  E-value=4.9e-16  Score=106.82  Aligned_cols=89  Identities=26%  Similarity=0.554  Sum_probs=70.1

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEccC-----CCceeEEEeCCEEEEEEccCCCCCCeEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLNS-----SNILDLKYKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      +|.+.. +.+..+.+|++++|.|.+.|.|.|.|.|++  ++..+..     ..++......+...|.|.+++.+|+|.|+
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            355543 567889999999999999999999999999  4444432     12344433344568999999999999999


Q ss_pred             EEEEcCCCceEEEEEEe
Q psy12422        262 CTATNSLGTAETKCKLT  278 (356)
Q Consensus       262 C~a~n~~g~~~~~~~l~  278 (356)
                      |.|.|..|....++.|.
T Consensus        81 C~A~N~~G~~~~~~~l~   97 (98)
T cd05870          81 CEAASRIGGHQKSMYLD   97 (98)
T ss_pred             EEEeccCCcceeEEEEe
Confidence            99999999999888774

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.69  E-value=3.9e-16  Score=106.91  Aligned_cols=81  Identities=31%  Similarity=0.560  Sum_probs=68.3

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      .+..+..|+++.|.|.+.|+|.|.+.|+++|..+... .++.  .....+.|.|.+++.+|+|.|+|.|.|..|....++
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYS--FNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEI   88 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEE--EeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence            3457899999999999999999999999999988765 3332  223335799999999999999999999999999888


Q ss_pred             EEec
Q psy12422        276 KLTP  279 (356)
Q Consensus       276 ~l~p  279 (356)
                      .|.+
T Consensus        89 ~L~V   92 (95)
T cd05730          89 HLKV   92 (95)
T ss_pred             EEEE
Confidence            8864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.69  E-value=1.7e-16  Score=101.58  Aligned_cols=69  Identities=32%  Similarity=0.421  Sum_probs=59.2

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+|.|.+.|.|+|.+.|+|++..+...++... .++  .|+|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~-~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL-DDK--SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEe-eCC--EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            58999999999999999999888876554443 333  7999999999999999999999999988888764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.69  E-value=2.5e-16  Score=100.04  Aligned_cols=68  Identities=35%  Similarity=0.490  Sum_probs=56.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   73 (356)
                      |++|.|.|.+.|.|.|.|+|+|+|.++..... ..  .+...|+|.++  .|+|.|+|.|.|..|...+++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~-~~--~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDE-MP--VGRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccc-ee--cCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            78999999999999999999999998865432 11  22337889886  48999999999999998887765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.69  E-value=2.8e-16  Score=106.61  Aligned_cols=75  Identities=20%  Similarity=0.391  Sum_probs=61.1

Q ss_pred             CCceEEEEEeccCCC-CeeEEee-CCEEccc-C-CeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCC-ceeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPP-PTVKWYK-GNRELSK-R-DYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKH-GTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-~~v~W~k-~g~~l~~-~-~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~   74 (356)
                      |++++|.|.+.|.|. |.|+|++ ||+.+.. . ++.+.. .+...+|.|.+++.+|+|.|+|.|.|.. |..++++.|.
T Consensus        15 G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~   94 (96)
T cd05865          15 GESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVK   94 (96)
T ss_pred             CCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEE
Confidence            789999999999995 7999998 8887754 3 222222 3334689999999999999999999996 8888888887


Q ss_pred             E
Q psy12422         75 V   75 (356)
Q Consensus        75 v   75 (356)
                      |
T Consensus        95 v   95 (96)
T cd05865          95 I   95 (96)
T ss_pred             E
Confidence            6

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.69  E-value=5.3e-16  Score=104.56  Aligned_cols=86  Identities=28%  Similarity=0.426  Sum_probs=70.8

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      |+.+...+.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+......  ...  ...|.|.+++.+|+|.|.|.|.|..
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~--~~~--~~~L~i~~v~~~D~G~Y~C~a~N~~   76 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEI--SMS--GAVLKIPNIQFEDEGTYECEAENIK   76 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEE--EEe--CCEEEECCCCcccCEEEEEEEEECC
Confidence            345556667788999999999999999999999999988766544322  222  3489999999999999999999999


Q ss_pred             CceEEEEEEe
Q psy12422        269 GTAETKCKLT  278 (356)
Q Consensus       269 g~~~~~~~l~  278 (356)
                      |....+..|.
T Consensus        77 G~~~~~~~l~   86 (88)
T cd04968          77 GKDTHQGRIY   86 (88)
T ss_pred             CcEEEEEEEE
Confidence            9998888775

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.69  E-value=2.2e-16  Score=103.50  Aligned_cols=78  Identities=12%  Similarity=0.154  Sum_probs=62.5

Q ss_pred             CceEEEEEecc--CCCCeeEEeeCCEEccc--C--CeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          2 QNVIKVKVGST--KPPPTVKWYKGNRELSK--R--DYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         2 ~~v~l~C~~~g--~p~~~v~W~k~g~~l~~--~--~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |++.|.|.+.+  .+++.|.|+|||++|..  .  ++.... ......|.|.+++.+|+|.|+|.|.|..+..++++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            68999999965  55789999999999962  2  222211 11223899999999999999999999999999999999


Q ss_pred             Eeccc
Q psy12422         75 VESEE   79 (356)
Q Consensus        75 v~~~~   79 (356)
                      |.++|
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            98764

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.69  E-value=2.6e-16  Score=107.96  Aligned_cols=75  Identities=24%  Similarity=0.405  Sum_probs=62.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC------CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR------DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |++++|.|.+.|.|.|.++|+++++.+...      ++.+........|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus        17 g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   96 (97)
T cd05869          17 EEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE   96 (97)
T ss_pred             CCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence            689999999999999999999999877532      12222333446899999999999999999999999999988886


Q ss_pred             E
Q psy12422         75 V   75 (356)
Q Consensus        75 v   75 (356)
                      |
T Consensus        97 v   97 (97)
T cd05869          97 V   97 (97)
T ss_pred             C
Confidence            5

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.69  E-value=3.4e-16  Score=101.80  Aligned_cols=73  Identities=19%  Similarity=0.476  Sum_probs=61.2

Q ss_pred             CCceEEEEEeccCCCCeeEEee-CCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.+.|++ ++..+..........++  +|.|.++..+|+|.|+|.|.|..|.++..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG--TLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC--EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7999999999999999999997 67776654433334444  7999999999999999999999999988887764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.69  E-value=5.9e-16  Score=103.89  Aligned_cols=84  Identities=25%  Similarity=0.431  Sum_probs=69.6

Q ss_pred             ccCCceeecCCCeEEEEEEEcCCCCCeEEEEE-CCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce-
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA-  271 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-  271 (356)
                      +.+.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+....++.....+....|.|.++..+|+|.|+|.|.|..|.. 
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   83 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ   83 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence            4456678999999999999999998 899998 5777766666666555666799999999999999999999999985 


Q ss_pred             EEEEEEe
Q psy12422        272 ETKCKLT  278 (356)
Q Consensus       272 ~~~~~l~  278 (356)
                      .+++.|.
T Consensus        84 ~~~i~l~   90 (92)
T cd05866          84 EATVVLE   90 (92)
T ss_pred             EEEEEEE
Confidence            5555554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.69  E-value=3.1e-16  Score=107.50  Aligned_cols=81  Identities=19%  Similarity=0.232  Sum_probs=67.5

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEe------CCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK------NGVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      ...+..|+.+.|.|.+.|+|+|.+.|+|||.++...........      ...++|.|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            56788899999999999999999999999999886543322211      123589999999999999999999999999


Q ss_pred             EEEEEEe
Q psy12422        272 ETKCKLT  278 (356)
Q Consensus       272 ~~~~~l~  278 (356)
                      ..++.|.
T Consensus        92 ~~t~~l~   98 (101)
T cd05859          92 SYTFALQ   98 (101)
T ss_pred             EEEEEEE
Confidence            8887775

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.69  E-value=4.5e-16  Score=100.47  Aligned_cols=72  Identities=29%  Similarity=0.526  Sum_probs=60.1

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEeC-CEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYKN-GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|.|.+.|.|.|.+.|+|++..+... .++.....+ +...|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD   74 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence            479999999999999999999998754 344443333 334799999999999999999999999999988774

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.68  E-value=7.2e-16  Score=104.59  Aligned_cols=84  Identities=21%  Similarity=0.394  Sum_probs=66.6

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCC-CeEEEEE-CCEEccC-CCceeEEE-eCCEEEEEEccCCCCCCeEEEEEEEcCC-C
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPE-PRVSWTK-NGQPLNS-SNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSL-G  269 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~-~g~~~~~-~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~-g  269 (356)
                      .|....+.+|+++.|.|.+.|.|. |.+.|++ +|..+.. ..++.... +...++|.|.+++.+|+|.|+|.|.|.. |
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g   85 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG   85 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence            345567899999999999999995 7999998 7876654 33333322 2234789999999999999999999997 8


Q ss_pred             ceEEEEEEe
Q psy12422        270 TAETKCKLT  278 (356)
Q Consensus       270 ~~~~~~~l~  278 (356)
                      ...+++.|.
T Consensus        86 ~~~~s~~l~   94 (96)
T cd05865          86 ESEATVNVK   94 (96)
T ss_pred             cEEEEEEEE
Confidence            888888775

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.68  E-value=4.6e-16  Score=102.02  Aligned_cols=74  Identities=26%  Similarity=0.471  Sum_probs=64.2

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      |+++.|.|.+.|.|.|.+.|++++..+....++......+...|.|.+++.+|+|.|+|.|.|..|.......+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            78899999999999999999999988877666666666667899999999999999999999999987665443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.68  E-value=2.2e-16  Score=98.76  Aligned_cols=64  Identities=28%  Similarity=0.454  Sum_probs=55.1

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|.|.+.|+|.|.+.|+|||..+...        .....|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   64 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE   64 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence            479999999999999999999988632        2234899999999999999999999999887776664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.68  E-value=8.5e-16  Score=105.62  Aligned_cols=89  Identities=24%  Similarity=0.481  Sum_probs=70.8

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC-----ceeEEEeCCEEEEEEccCCCCCCeEEEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-----ILDLKYKNGVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      +|.|. .+.+..+.+|+++.|.|.+.|+|.|.+.|++++..+....     ++........+.|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            35554 3456789999999999999999999999999986665322     22222233457899999999999999999


Q ss_pred             EEcCCCceEEEEEEe
Q psy12422        264 ATNSLGTAETKCKLT  278 (356)
Q Consensus       264 a~n~~g~~~~~~~l~  278 (356)
                      |.|..|....++.|.
T Consensus        81 a~N~~G~~~~s~~l~   95 (96)
T cd05732          81 ASNRIGGDQQSMYLE   95 (96)
T ss_pred             EEeCCCCcEEEEEEe
Confidence            999999999888774

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.68  E-value=4.5e-16  Score=103.84  Aligned_cols=72  Identities=29%  Similarity=0.471  Sum_probs=62.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|.++..... +...++  .|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus        14 G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~-~~~~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728          14 GSSLRWECKASGNPRPAYRWLKNGQPLASENR-IEVEAG--DLRITKLSLSDSGMYQCVAENKHGTIYASAELAV   85 (85)
T ss_pred             CCcEEEEEEeeEeCCCEEEEEECCEECCCCCe-EEEeCC--EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence            78999999999999999999999999875442 223344  7999999999999999999999999988888764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.68  E-value=6.5e-16  Score=104.98  Aligned_cols=75  Identities=35%  Similarity=0.598  Sum_probs=68.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.+.|+++|.++..+ ++.+...++..+|+|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        15 G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   15 GESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             TSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence            799999999999999999999999999864 566667778889999999999999999999999999999988876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.68  E-value=3.2e-16  Score=101.20  Aligned_cols=70  Identities=26%  Similarity=0.455  Sum_probs=59.0

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |.|.|.+.|.|.|.+.|+|++.++...+....  .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            57999999999999999999988865432222  22338999999999999999999999999988888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.68  E-value=9.2e-16  Score=100.10  Aligned_cols=73  Identities=27%  Similarity=0.561  Sum_probs=61.2

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEccCCCce-eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL-DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+.+.|.|.+.|.|.|.++|+++|..+...... ......  ..|.|.+++.+|+|.|+|.|.|..|...+.+.|.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSS--GALILTDVQPSDTAVYQCEARNRHGNLLANAHVH   74 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeC--CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            788999999999999999999999988754321 222223  3799999999999999999999999999888775

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.68  E-value=6.3e-16  Score=105.01  Aligned_cols=73  Identities=19%  Similarity=0.321  Sum_probs=63.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   73 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|..+... ++.+.......+|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus        18 G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          18 GESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             CCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence            789999999999999999999999998754 4444445556799999999999999999999999998887776

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.67  E-value=1.3e-15  Score=103.03  Aligned_cols=83  Identities=33%  Similarity=0.501  Sum_probs=71.1

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeC-CEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN-GVASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      |..+++.+|+.+.|.|.+.|.|.|.+.|++++..+.....+...... ...+|.|.+++.+|+|.|+|.|.|..|.+..+
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence            45678999999999999999999999999999988776655444333 34589999999999999999999999999998


Q ss_pred             EEEe
Q psy12422        275 CKLT  278 (356)
Q Consensus       275 ~~l~  278 (356)
                      +.|.
T Consensus        88 ~~v~   91 (92)
T cd05891          88 VTVS   91 (92)
T ss_pred             EEEE
Confidence            8874

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.67  E-value=5.5e-16  Score=101.65  Aligned_cols=69  Identities=22%  Similarity=0.353  Sum_probs=56.9

Q ss_pred             EEEEeccCCCCeeEEeeCCEEcccCCee-EEe-------cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          6 KVKVGSTKPPPTVKWYKGNRELSKRDYS-MSY-------SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         6 l~C~~~g~p~~~v~W~k~g~~l~~~~~~-~~~-------~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |.|.+.|+|.|.|+|||||+++..+.+. ...       ......|.|.+++.+|+|.|+|.|.|..|.+++++.++
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            7899999999999999999999765421 111       12345799999999999999999999999998887765

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.67  E-value=4.4e-16  Score=98.80  Aligned_cols=69  Identities=20%  Similarity=0.174  Sum_probs=54.7

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      +.|.|.+.|.|+|+++|+|||.++..........++  +|.|.+++.+|+|.|+|.|+|..........++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            579999999999999999999998754322333333  799999999999999999999866555554443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.67  E-value=5.6e-16  Score=104.78  Aligned_cols=76  Identities=20%  Similarity=0.254  Sum_probs=62.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcc--------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELS--------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV   72 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~--------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   72 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|..+.        ...+.....++  .|+|.+++.+|+|.|+|.|.|..|...+.+.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   78 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG--DLTITNVQRSDVGYYICQTLNVAGSILTKAY   78 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC--eEEEeeCChhhCEEEEEEEEcCCCceEEEEE
Confidence            7899999999999999999999886531        11111222233  7999999999999999999999999999999


Q ss_pred             EEEecc
Q psy12422         73 VIVESE   78 (356)
Q Consensus        73 l~v~~~   78 (356)
                      |.|.+.
T Consensus        79 l~V~~~   84 (90)
T cd05726          79 LEVTDV   84 (90)
T ss_pred             EEEeec
Confidence            999864

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.67  E-value=1.9e-15  Score=101.29  Aligned_cols=80  Identities=25%  Similarity=0.549  Sum_probs=67.2

Q ss_pred             eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee-EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD-LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      ..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....... .........|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            457889999999999999999999999999987654321 2223345689999999999999999999999999998877


Q ss_pred             e
Q psy12422        278 T  278 (356)
Q Consensus       278 ~  278 (356)
                      .
T Consensus        84 ~   84 (85)
T cd05857          84 D   84 (85)
T ss_pred             E
Confidence            4

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.67  E-value=1.1e-15  Score=100.28  Aligned_cols=71  Identities=24%  Similarity=0.430  Sum_probs=59.1

Q ss_pred             EEEEEEcCCCCCeEEEEECCEEccCCCceeEEEe-------CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        208 DLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK-------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       208 ~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      .|.|.+.|+|.|.++|+|||..+...........       ...+.|.|.+++.+|+|.|+|.|.|..|.+..++.+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            4789999999999999999999987654332211       2246799999999999999999999999999988764

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.67  E-value=1.7e-15  Score=98.26  Aligned_cols=72  Identities=29%  Similarity=0.459  Sum_probs=60.1

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|.|.+.|.|.|.+.|+|+|..+... .++..... .+..+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence            479999999999999999999998743 34443332 3455799999999999999999999999999888774

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.67  E-value=2.3e-16  Score=106.43  Aligned_cols=76  Identities=18%  Similarity=0.295  Sum_probs=59.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC----EEcccC--Ce-eEE-------ecCCeEEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN----RELSKR--DY-SMS-------YSDGVVSMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g----~~l~~~--~~-~~~-------~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      |++++|.|.+.|.|.|.|+|+|++    ..+...  .+ ...       ..+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999999999999963    333211  11 111       1122347999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy12422         67 DETNCVVIVE   76 (356)
Q Consensus        67 ~~~~~~l~v~   76 (356)
                      ..+++.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9999998873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.67  E-value=1.4e-15  Score=97.71  Aligned_cols=70  Identities=30%  Similarity=0.588  Sum_probs=59.7

Q ss_pred             eEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       206 ~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ++.|.|.+.|.|.|.++|+|+|..+.....+.....+   .|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence            4789999999999999999999988766655443332   588889999999999999999999999988874

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.67  E-value=2.7e-15  Score=118.24  Aligned_cols=124  Identities=22%  Similarity=0.280  Sum_probs=85.8

Q ss_pred             CceeecCCCeEEEEEEEcCCCC-----------CeEEEEECCEEcc--CCCce------e-EEEeCCEEEEEEccCCCCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPE-----------PRVSWTKNGQPLN--SSNIL------D-LKYKNGVASLQIQEVFPED  256 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~-----------p~i~W~~~g~~~~--~~~~~------~-~~~~~~~~~L~i~~v~~~d  256 (356)
                      ....+.+|+++.|.|.+.++|.           +.+.|+|++....  .....      . .........|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            3467889999999999987654           4799999876521  11000      0 0111223589999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEecCCCC-------------------------ccceeEEeC---------------CeEE
Q psy12422        257 EGVYVCTATNSLGTAETKCKLTPLNSS-------------------------NILDLKYKN---------------GVAS  296 (356)
Q Consensus       257 ~G~Y~C~a~n~~g~~~~~~~l~p~~~~-------------------------~~~~~~~~~---------------~~~~  296 (356)
                      +|.|+|.|.|..+..+.++.|.....+                         ....+.|.+               ++..
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~  189 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNST  189 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCE
Confidence            999999999999887776665411000                         001233432               3357


Q ss_pred             EEEecCCCCCCeEEEEEEEcCCcc
Q psy12422        297 LQIQEVFPEDEGVYVCTATNSLGT  320 (356)
Q Consensus       297 L~i~~v~~~d~G~Y~C~a~n~~g~  320 (356)
                      |.|.+|+.+|+|.|+|+|+...+.
T Consensus       190 L~I~~V~~~DsG~YtC~a~~~~~g  213 (227)
T PHA02826        190 LVIKSATHDDSGIYTCNLRFNKNS  213 (227)
T ss_pred             EEECcCCHHhCEEEEEEEEEeECC
Confidence            999999999999999999987543

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.67  E-value=6.6e-16  Score=100.08  Aligned_cols=70  Identities=26%  Similarity=0.501  Sum_probs=56.4

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEccc--CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIV   75 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~v   75 (356)
                      ++|.|.+.|.|.|.|+|||++.++..  ..+.....++  .|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            57999999999999999999998863  2222333334  69999999999999999999999985 45566665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.66  E-value=1e-15  Score=98.83  Aligned_cols=71  Identities=27%  Similarity=0.441  Sum_probs=58.5

Q ss_pred             EEEEEEcCCCCCeEEEEECCEEccCCCceeEE---E--eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        208 DLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK---Y--KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       208 ~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~---~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      -|.|.+.|+|.|.|+|+|||.++.........   .  ....+.|.|.++..+|+|.|+|.|.|..|.+.+++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            37899999999999999999999876543221   1  12346899999999999999999999999998887763

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.66  E-value=7.4e-16  Score=105.96  Aligned_cols=75  Identities=21%  Similarity=0.372  Sum_probs=60.7

Q ss_pred             CCceEEEEEeccCCCCeeEEee--CCEEccc------CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK--GNRELSK------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV   72 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k--~g~~l~~------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   72 (356)
                      |++++|.|.+.|.|.|.|+|||  +|..+..      .++.+....+..+|+|.+++.+|+|.|+|.|.|..|....++.
T Consensus        16 G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   95 (98)
T cd05870          16 NGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY   95 (98)
T ss_pred             CCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEE
Confidence            7899999999999999999999  4554431      2333333345568999999999999999999999999988887


Q ss_pred             EEE
Q psy12422         73 VIV   75 (356)
Q Consensus        73 l~v   75 (356)
                      |.|
T Consensus        96 l~~   98 (98)
T cd05870          96 LDI   98 (98)
T ss_pred             EeC
Confidence            764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.66  E-value=2.1e-15  Score=101.03  Aligned_cols=80  Identities=28%  Similarity=0.415  Sum_probs=66.0

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEe--C--CEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYK--N--GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~--~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+.+.|.|.+.|.|++.+.|++++..+... .++.+...  +  ..++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            789999999999999999999999888643 34433321  1  136899999999999999999999999999999998


Q ss_pred             cCCCC
Q psy12422        279 PLNSS  283 (356)
Q Consensus       279 p~~~~  283 (356)
                      +..+|
T Consensus        81 V~~~P   85 (88)
T cd05735          81 VQEPP   85 (88)
T ss_pred             EeCCC
Confidence            66544

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.66  E-value=1.3e-15  Score=102.54  Aligned_cols=72  Identities=17%  Similarity=0.273  Sum_probs=59.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE-EEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~v   75 (356)
                      |++|+|.|.+.|. .|.|.|||+|.++...+......+  .+|+|.+++.+|+|.|+|.|.|..|...+ .+.|.|
T Consensus        18 g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          18 NQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDN--RTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             CCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCC--CEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            7899999999999 999999999999876553332222  37999999999999999999999998654 566655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.66  E-value=8.8e-16  Score=105.55  Aligned_cols=75  Identities=23%  Similarity=0.449  Sum_probs=62.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC------CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR------DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |+++.|.|.+.|.|.|.+.|+|++..+...      ++.+........|+|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus        16 g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~   95 (96)
T cd05732          16 LEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE   95 (96)
T ss_pred             CCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence            789999999999999999999998776532      22233334556899999999999999999999999998888776


Q ss_pred             E
Q psy12422         75 V   75 (356)
Q Consensus        75 v   75 (356)
                      |
T Consensus        96 v   96 (96)
T cd05732          96 V   96 (96)
T ss_pred             C
Confidence            4

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.66  E-value=2.4e-15  Score=102.15  Aligned_cols=82  Identities=28%  Similarity=0.524  Sum_probs=63.1

Q ss_pred             CeecccCCceeec---CCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12422        190 PQFANKLTDKTID---DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVF-PEDEGVYVCTAT  265 (356)
Q Consensus       190 p~~~~~~~~~~v~---~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~  265 (356)
                      |.|...+.++.+.   +|+.+.|.|.+.|+|.|.++|+|+|..+.......+....+  .|.|.++. .+|+|.|.|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence            4455555554443   47899999999999999999999999987544333333343  78898885 699999999999


Q ss_pred             cCCCceEE
Q psy12422        266 NSLGTAET  273 (356)
Q Consensus       266 n~~g~~~~  273 (356)
                      |..|...+
T Consensus        80 N~~G~~~S   87 (94)
T cd05848          80 NSIGSILS   87 (94)
T ss_pred             cCCCeEEe
Confidence            99998754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.65  E-value=1.2e-15  Score=102.72  Aligned_cols=73  Identities=29%  Similarity=0.433  Sum_probs=61.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.++|+|++..+..... ....++  .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        16 g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~-~~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (88)
T cd04968          16 GQNVTLECFALGNPVPQIKWRKVDGSMPSSAE-ISMSGA--VLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ   88 (88)
T ss_pred             CCcEEEEEEeeEeCCCEEEEEECCCcCCCccE-EEEeCC--EEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence            78999999999999999999998877654432 222333  89999999999999999999999999999888773

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.65  E-value=4.5e-15  Score=100.88  Aligned_cols=86  Identities=23%  Similarity=0.425  Sum_probs=64.8

Q ss_pred             CeecccCCceeecCC---CeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12422        190 PQFANKLTDKTIDDG---QCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVF-PEDEGVYVCTAT  265 (356)
Q Consensus       190 p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~  265 (356)
                      |.|...|.++.+.+|   +.++|.|.+.|+|.|.++|++||..+...........++  .|.|.++. .+|+|.|.|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~   79 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAI   79 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEE
Confidence            455556666666555   579999999999999999999999987543333333333  78898865 589999999999


Q ss_pred             cCCCceEE-EEEE
Q psy12422        266 NSLGTAET-KCKL  277 (356)
Q Consensus       266 n~~g~~~~-~~~l  277 (356)
                      |..|.... .+.|
T Consensus        80 N~~G~~~s~~a~l   92 (94)
T cd05850          80 NRCGTVVSREANL   92 (94)
T ss_pred             cCcCcEEEEEEEE
Confidence            99998764 4443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.65  E-value=9.5e-16  Score=99.87  Aligned_cols=70  Identities=26%  Similarity=0.410  Sum_probs=56.6

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEc-cc--C-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNREL-SK--R-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l-~~--~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      ++|.|.+.|.|.|.|+|+|+|... +.  . ++.+...++  .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            579999999999999999998643 22  1 222222233  7999999999999999999999999999988887

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.65  E-value=1.5e-15  Score=98.78  Aligned_cols=73  Identities=25%  Similarity=0.460  Sum_probs=61.0

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEccCCCc-eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI-LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+.+.|.|.+.|+|.|.|+|+++|.++..... .....+++  .|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVN   74 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence            67899999999999999999999999864322 11223333  789999999999999999999999999988875

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.65  E-value=1.7e-15  Score=102.49  Aligned_cols=75  Identities=25%  Similarity=0.417  Sum_probs=62.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecC-CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.+.|||+|..+... ++.....+ ...+|.|.+++.+|+|.|+|.|.|..|.+...+.|.|
T Consensus        16 G~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          16 GKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             CCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence            789999999999999999999999988654 33333333 3458999999999999999999999999988877754

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.65  E-value=8.6e-16  Score=102.41  Aligned_cols=74  Identities=28%  Similarity=0.471  Sum_probs=61.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|..+...... ........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         9 G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           9 GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG-ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             CCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc-eecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            789999999999999999999999988644321 22334468999999999999999999999999888877764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.65  E-value=1.6e-15  Score=99.34  Aligned_cols=74  Identities=26%  Similarity=0.451  Sum_probs=62.1

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+.+.|.|.+.|+|.|.+.|+++|..+...... .........|.|.+++.+|+|.|+|.|.|..|...+.+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH   74 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence            788999999999999999999999988755432 11222335899999999999999999999999999888875

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.65  E-value=1.1e-15  Score=97.65  Aligned_cols=69  Identities=30%  Similarity=0.608  Sum_probs=59.1

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|.|.+.|.|.|.+.|+|+|..+....++.+..   ...|.|.+++.+|+|.|+|.|.|..|....++.|+
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt   69 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS   69 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence            4799999999999999999999887665544322   24899999999999999999999999999888763

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.64  E-value=2.7e-15  Score=100.71  Aligned_cols=74  Identities=19%  Similarity=0.383  Sum_probs=59.5

Q ss_pred             CCceEEEEEeccCCCCeeEEee-CCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK-GNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|. .++||| +|.++... ++.+...+....|+|.+++.+|+|.|+|.|+|..|.. .+++.|.+
T Consensus        15 G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          15 GESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             CCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            789999999999998 899998 57777544 3444444445689999999999999999999999886 45566554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.64  E-value=8.4e-15  Score=102.29  Aligned_cols=81  Identities=26%  Similarity=0.392  Sum_probs=65.4

Q ss_pred             CCCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEe----CCEEEEEEccCC-CCCCeEEEEEEEcCCCceEEEEE
Q psy12422        203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYK----NGVASLQIQEVF-PEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       203 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~----~~~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      .|..++|.|.+.|.|+|.+.|++||..+... .++.....    ...+.|+|.+++ .+|.|.|+|.|.|..|.+...+.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            4678999999999999999999999988643 23322211    113689999997 58999999999999999999999


Q ss_pred             EecCCCC
Q psy12422        277 LTPLNSS  283 (356)
Q Consensus       277 l~p~~~~  283 (356)
                      |.+...|
T Consensus       102 L~~~~~p  108 (109)
T cd05773         102 LVSTSRP  108 (109)
T ss_pred             EEecCCC
Confidence            9876655

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.64  E-value=2.8e-15  Score=97.05  Aligned_cols=72  Identities=32%  Similarity=0.511  Sum_probs=62.5

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+++.|.|.+.|.|.|.+.|++++..+....++.... .  ..|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~-~--~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP-D--GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC-C--CeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            6889999999999999999999999887666554322 2  3799999999999999999999999999988774

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.64  E-value=4.9e-15  Score=99.69  Aligned_cols=73  Identities=26%  Similarity=0.461  Sum_probs=61.6

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      .++.+.+|++++|.|.+.|. .|.+.|++++..+... +...  ......|.|.+++++|+|.|.|.|.|..|....
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQL--SNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEE--eCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            56789999999999999999 9999999999987643 2322  233348999999999999999999999998655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.64  E-value=3.2e-15  Score=104.39  Aligned_cols=79  Identities=19%  Similarity=0.272  Sum_probs=64.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEe-cC---CeEEEEEeeCC-CCCCeEEEEEEEeCCceeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSY-SD---GVVSMEIIDCK-PEDSGEYKCVATNKHGTDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~-~~---~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~~~~l   73 (356)
                      |.++.|.|.+.|.|.|.++|+|||..+...  ++.... ..   ....|+|.++. .+|.|.|+|.|.|..|.+...+.|
T Consensus        23 g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L  102 (109)
T cd05773          23 SSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQL  102 (109)
T ss_pred             CCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEE
Confidence            468999999999999999999999998642  332221 11   13579999997 599999999999999999999999


Q ss_pred             EEeccc
Q psy12422         74 IVESEE   79 (356)
Q Consensus        74 ~v~~~~   79 (356)
                      .|..+|
T Consensus       103 ~~~~~p  108 (109)
T cd05773         103 VSTSRP  108 (109)
T ss_pred             EecCCC
Confidence            998654

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.63  E-value=2.8e-15  Score=98.02  Aligned_cols=74  Identities=23%  Similarity=0.425  Sum_probs=60.9

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCC-eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      +.|.|.+.|.|.|.+.|+|+++.+.... ...........|.|.+++.+|.|.|+|.|.|..|.++..+.|.|.+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   75 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED   75 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence            4799999999999999999999886432 2222223334799999999999999999999999999999998863

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.63  E-value=4.3e-15  Score=94.36  Aligned_cols=69  Identities=30%  Similarity=0.648  Sum_probs=57.0

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+++.|.|.+.|.|.|.|+|+|+|..+.......    .+...|.|.+++  |+|.|+|.|.|..|...+++.|.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~----~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~   69 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMP----VGRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT   69 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCcccee----cCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence            6789999999999999999999998886544321    223479999874  79999999999999998888763

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.63  E-value=1.2e-14  Score=99.96  Aligned_cols=88  Identities=23%  Similarity=0.337  Sum_probs=69.9

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCC--CceeEEEe----CCEEEEEEccCCCC-CCeEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSS--NILDLKYK----NGVASLQIQEVFPE-DEGVY  260 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~--~~~~~~~~----~~~~~L~i~~v~~~-d~G~Y  260 (356)
                      ||.+.. +....+.+|+.+.|.|.+.|.|.| .|.|++++..+...  .++.+...    ...++|.|.++..+ |.|.|
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            455543 456778999999999999999999 59999999888654  34443332    22368999999995 59999


Q ss_pred             EEEEEcCCCceEEEEEE
Q psy12422        261 VCTATNSLGTAETKCKL  277 (356)
Q Consensus       261 ~C~a~n~~g~~~~~~~l  277 (356)
                      +|.|.|..|.+...+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999999888776

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.63  E-value=8.1e-15  Score=101.82  Aligned_cols=89  Identities=33%  Similarity=0.604  Sum_probs=66.3

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC----CceeEEE-eCCEEEEEEc--cCCCCCCeEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS----NILDLKY-KNGVASLQIQ--EVFPEDEGVYV  261 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~----~~~~~~~-~~~~~~L~i~--~v~~~d~G~Y~  261 (356)
                      ||.+...+.+..+.+|+.+.|.|.+.|+|.|.+.|+|+|..+...    ....... .+....+.+.  .++.+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            477777888899999999999999999999999999999988752    1111222 2222233332  34789999999


Q ss_pred             EEEEcCCCc-eEEEEEE
Q psy12422        262 CTATNSLGT-AETKCKL  277 (356)
Q Consensus       262 C~a~n~~g~-~~~~~~l  277 (356)
                      |.|.|..|. ....+.|
T Consensus        81 C~a~N~~G~~~s~~~~l   97 (100)
T cd07693          81 CVAHNSLGEAVSRNASL   97 (100)
T ss_pred             EEEEccccceecceEEE
Confidence            999999998 4455554

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>KOG3515|consensus

Probab=99.63  E-value=2e-14  Score=127.90  Aligned_cols=334  Identities=18%  Similarity=0.163  Sum_probs=189.0

Q ss_pred             CceEEEEEe--ccCCCCeeEEeeCCEEcccCC---eeE--EecC----CeEEEEEeeCCCCCCeEEEEEEEeC---Ccee
Q psy12422          2 QNVIKVKVG--STKPPPTVKWYKGNRELSKRD---YSM--SYSD----GVVSMEIIDCKPEDSGEYKCVATNK---HGTD   67 (356)
Q Consensus         2 ~~v~l~C~~--~g~p~~~v~W~k~g~~l~~~~---~~~--~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~---~g~~   67 (356)
                      ..+.+.|.+  .+.|.+.++|+.++.......   ...  ...+    ....|++...+.+|.|.|+|.|.|.   .+..
T Consensus       113 ~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~  192 (741)
T KOG3515|consen  113 GVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSF  192 (741)
T ss_pred             CeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccc
Confidence            567889965  567888999999887653211   000  0111    1236788888899999999999883   4444


Q ss_pred             EEEEEEEEeccccchhhhhh-cccccccCccceeeeccc---CCceeeecccccccCCccccCCCCceEEEEeecccccc
Q psy12422         68 ETNCVVIVESEEESKEQQEL-AHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYS  143 (356)
Q Consensus        68 ~~~~~l~v~~~~~~~~~~~~-~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (356)
                      .....+.|............ ....+.+|+.+.+.|...   |.+.+.|+++......................      
T Consensus       193 ~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~------  266 (741)
T KOG3515|consen  193 AKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSST------  266 (741)
T ss_pred             cceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCccccc------
Confidence            44555555544333222222 226788999999999655   88889999987766543111111100000000      


Q ss_pred             ccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCe-ecccCCceeecCCCeEEEEEEE-cCCCCCeE
Q psy12422        144 SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQ-FANKLTDKTIDDGQCLDLSAVV-KGDPEPRV  221 (356)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i  221 (356)
                       ...............|.+.   +.  ........+       ..+|. ..+......+..|++..+.|.. .++|++.+
T Consensus       267 -~~~~~~r~~~~~~~kc~a~---n~--~~~~~~tav-------~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i  333 (741)
T KOG3515|consen  267 -LVLRVGRQDLQAQLKCKAS---NL--LAASQITAV-------QVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHI  333 (741)
T ss_pred             -ccccccccchhhhhhcccc---Cc--cccceeeec-------ccccccccccCcccccccccccccceeccCCCCccce
Confidence             0000000000111111111   10  001111111       11121 1222333447889999999987 66888889


Q ss_pred             EEEECCEEccCCCceeEEE--e--CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe--cCCCCccc---------
Q psy12422        222 SWTKNGQPLNSSNILDLKY--K--NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--PLNSSNIL---------  286 (356)
Q Consensus       222 ~W~~~g~~~~~~~~~~~~~--~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~--p~~~~~~~---------  286 (356)
                      .|+++..............  .  .....+........|.|.|+|.|.|.......+..+.  +...+..+         
T Consensus       334 ~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~  413 (741)
T KOG3515|consen  334 AWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVA  413 (741)
T ss_pred             eeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceee
Confidence            9999654443322111111  1  1123466677788899999999999885443333222  11111111         


Q ss_pred             -------------------eeEEe-----------------CCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy12422        287 -------------------DLKYK-----------------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR  330 (356)
Q Consensus       287 -------------------~~~~~-----------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  330 (356)
                                         .+.|.                 .......+.++...|.|.|.|.|.|+.|.+.....+.+.
T Consensus       414 ~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~  493 (741)
T KOG3515|consen  414 MEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVH  493 (741)
T ss_pred             ccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccc
Confidence                               12221                 123445577799999999999999999999999999999


Q ss_pred             ecCCCCCCCCCCcccCCCCceeEee
Q psy12422        331 STPAANLGKSPSKESDKAPRFFAIV  355 (356)
Q Consensus       331 ~~p~~~~~~~~~~~~~~~~~~~~~~  355 (356)
                      ..|.+.-..++..... +......|
T Consensus       494 ~sp~~~~~~~~~~~~~-~ns~~~~~  517 (741)
T KOG3515|consen  494 TSPHNHHLQDQVEGAT-GNSVDGEC  517 (741)
T ss_pred             cCCcccccccccccCC-CCccccee
Confidence            9999877777665544 33344433

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.62  E-value=2e-15  Score=102.04  Aligned_cols=75  Identities=20%  Similarity=0.312  Sum_probs=59.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC----CEEcccCC---eeEEec-------CCeEEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG----NRELSKRD---YSMSYS-------DGVVSMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~----g~~l~~~~---~~~~~~-------~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      |+++.|.|.+.|.|.|.|+|+|+    |..+....   ......       +....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999994    45443221   111111       12357999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy12422         67 DETNCVVIV   75 (356)
Q Consensus        67 ~~~~~~l~v   75 (356)
                      ..+++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999998887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.62  E-value=4.4e-15  Score=100.87  Aligned_cols=68  Identities=32%  Similarity=0.555  Sum_probs=55.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |++++|.|.+.|.|.|.|+|+|||.++... .......++  .|.|.++. .+|+|.|+|.|.|..|...+.
T Consensus        19 g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~   88 (94)
T cd05848          19 EKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLATNSIGSILSR   88 (94)
T ss_pred             CCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEEcCCCeEEec
Confidence            578999999999999999999999999643 223333444  68888874 699999999999999988543

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.62  E-value=2.2e-15  Score=95.56  Aligned_cols=67  Identities=30%  Similarity=0.483  Sum_probs=55.8

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|.|.+.|+|.|.+.|+|||.++......  . .  ...|.|.++..+|+|.|+|.|.|..|..+....+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~-~--~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~   67 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K-R--GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ   67 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c-c--CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence            368999999999999999999999764322  1 1  24799999999999999999999999877766653

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.62  E-value=3.7e-15  Score=97.87  Aligned_cols=71  Identities=24%  Similarity=0.349  Sum_probs=58.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.+. .+.|.|+|||.+|..... ....++  .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         9 G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~-~~~~~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973           9 GDLLQLRCRLRDD-VQSINWTKDGVQLGENNR-TRITGE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             CCCEEEEEEecCC-CceEEEeeCCcCCCCCce-EEEeCC--EEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            7899999999886 568999999999976432 222333  7999999999999999999999998877776654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.62  E-value=1.3e-14  Score=98.10  Aligned_cols=81  Identities=23%  Similarity=0.418  Sum_probs=61.0

Q ss_pred             CeecccCCceeecC---CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12422        190 PQFANKLTDKTIDD---GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVF-PEDEGVYVCTAT  265 (356)
Q Consensus       190 p~~~~~~~~~~v~~---g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~  265 (356)
                      |.|...|.++.+.+   |..+.|.|.+.|+|.|.++|+|++..+...... ....++  .|.|.++. .+|+|.|.|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~-~~~~~g--~L~I~~~~~~~D~G~Y~C~A~   78 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDR-YSMVGG--NLVINNPDKYKDAGRYVCIVS   78 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCe-EEEECC--EEEECcCCcCCCCEEEEEEEE
Confidence            45555555554544   347999999999999999999999888543221 223333  79999985 689999999999


Q ss_pred             cCCCceEE
Q psy12422        266 NSLGTAET  273 (356)
Q Consensus       266 n~~g~~~~  273 (356)
                      |..|....
T Consensus        79 N~~G~~~s   86 (93)
T cd05849          79 NIYGKVRS   86 (93)
T ss_pred             eCcceEEE
Confidence            99998754

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.62  E-value=3.8e-15  Score=97.32  Aligned_cols=69  Identities=26%  Similarity=0.492  Sum_probs=56.9

Q ss_pred             eEEEEEecc-CCCCeeEEeeCCEEcccCCe----eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422          4 VIKVKVGST-KPPPTVKWYKGNRELSKRDY----SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV   72 (356)
Q Consensus         4 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   72 (356)
                      ++|.|.+.| .|.|.+.|+|+|+++.....    .+.......+|.|.+++.+|+|.|+|.|.|..|.+..++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            579999998 99999999999999875421    1233345568999999999999999999999999877654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.61  E-value=1.3e-14  Score=96.41  Aligned_cols=78  Identities=21%  Similarity=0.383  Sum_probs=61.7

Q ss_pred             CeEEEEEEEcCCCCC--eEEEEECCEEccCCC---ce-eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        205 QCLDLSAVVKGDPEP--RVSWTKNGQPLNSSN---IL-DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       205 ~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~---~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ++++|.|.+.|.|.|  .+.|++||..+....   ++ ........++|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999987  589999999886432   22 112222346899999999999999999999999999999887


Q ss_pred             cCCC
Q psy12422        279 PLNS  282 (356)
Q Consensus       279 p~~~  282 (356)
                      +..+
T Consensus        81 V~~~   84 (85)
T cd05854          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            5443

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.61  E-value=4.8e-15  Score=94.97  Aligned_cols=68  Identities=34%  Similarity=0.499  Sum_probs=57.1

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|.|.+.|+|.|.+.|+|+|..+....+.  ..  ...+|.|.+++.+|+|.|+|.|.|..|....+..+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~--~~--~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   68 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT--KK--SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT   68 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--Ec--CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence            468999999999999999999998766432  22  235899999999999999999999999887776654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.61  E-value=7.9e-15  Score=95.86  Aligned_cols=72  Identities=21%  Similarity=0.476  Sum_probs=58.6

Q ss_pred             ccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      ..|.++.+.+|+.+.|.|.+.|+|.| .|.|++||.++....      ....+.|.|..+  .|+|.|.|.|.|..|...
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~   74 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------APSPSVLNVPGL--NETSKFSCEAHNAKGVTT   74 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence            34567889999999999999999999 799999999886411      112247899887  478999999999999765


Q ss_pred             E
Q psy12422        273 T  273 (356)
Q Consensus       273 ~  273 (356)
                      +
T Consensus        75 s   75 (81)
T cd05749          75 S   75 (81)
T ss_pred             e
Confidence            4

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.61  E-value=5.4e-15  Score=98.15  Aligned_cols=75  Identities=23%  Similarity=0.360  Sum_probs=57.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCE---Ec--ccCCee-EEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNR---EL--SKRDYS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~---~l--~~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |+++.|.|.+.|.|.|.++|||++.   .+  ....+. ........+|.|.+++.+|+|.|.|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            8999999999999999999999742   11  111110 00111234899999999999999999999999998888876


Q ss_pred             E
Q psy12422         75 V   75 (356)
Q Consensus        75 v   75 (356)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            5

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.61  E-value=4.7e-15  Score=95.19  Aligned_cols=69  Identities=36%  Similarity=0.634  Sum_probs=57.2

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|.|.+.|+|.|.+.|++++..+.... ..  ......+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   69 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TK--KLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVT   69 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-ee--EEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEE
Confidence            4799999999999999999988775432 22  222345899999999999999999999999999888775

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.61  E-value=3.4e-15  Score=100.94  Aligned_cols=73  Identities=21%  Similarity=0.247  Sum_probs=59.3

Q ss_pred             CCceEEEEEecc-----CCCCeeEEeeCCEEccc---CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422          1 MQNVIKVKVGST-----KPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV   72 (356)
Q Consensus         1 g~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~---~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   72 (356)
                      |+++.|.|.+.|     .|.|.|+|||+|.++..   ....+...++  .|.|.+++.+|+|.|+|.++|..|..+..+.
T Consensus        14 G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~   91 (94)
T cd05756          14 GEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYCMKVSIS   91 (94)
T ss_pred             CCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCccEEEEEE
Confidence            789999999988     68999999999976542   1122222333  7999999999999999999999999998888


Q ss_pred             EEE
Q psy12422         73 VIV   75 (356)
Q Consensus        73 l~v   75 (356)
                      |.|
T Consensus        92 L~v   94 (94)
T cd05756          92 LTV   94 (94)
T ss_pred             EEC
Confidence            765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.60  E-value=1.2e-14  Score=95.40  Aligned_cols=77  Identities=25%  Similarity=0.531  Sum_probs=64.4

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ....+.+|+.+.|.|.+.+. .+.+.|+|||.++....++.+  .+.  .|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~--~~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~   76 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI--TGE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFS   76 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE--eCC--EEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence            45678899999999999986 568999999999876655433  233  7999999999999999999999999887776


Q ss_pred             Ee
Q psy12422        277 LT  278 (356)
Q Consensus       277 l~  278 (356)
                      +.
T Consensus        77 v~   78 (79)
T cd04973          77 VN   78 (79)
T ss_pred             Ee
Confidence            64

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.60  E-value=7e-15  Score=95.99  Aligned_cols=67  Identities=25%  Similarity=0.586  Sum_probs=54.2

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      ++|.|.+.|.|.|.++|+|+|..+...... .........|.|.+++.+|+|.|.|.|.|..|....+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   67 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGN-YSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSS   67 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCcc-EEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeC
Confidence            479999999999999999999988655422 1222333489999999999999999999999987543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.60  E-value=8.6e-15  Score=98.94  Aligned_cols=66  Identities=24%  Similarity=0.387  Sum_probs=53.5

Q ss_pred             CceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEE
Q psy12422          2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         2 ~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      ..+.|.|.+.|.|.|.|+|+|++.++..........++  .|.|.++. .+|+|.|+|.|.|..|...+
T Consensus        20 ~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          20 GKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGG--NLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             CeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECC--EEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            47999999999999999999999988633222233344  78998885 69999999999999998755

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.59  E-value=1.5e-14  Score=97.28  Aligned_cols=72  Identities=29%  Similarity=0.453  Sum_probs=57.8

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcccCC-eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE-EEEEE
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~   74 (356)
                      |+++.|.|.+ .|.|.|.+.|+|+|..+.... ......++  .|.|.+++.+|+|.|+|.|.|..|...+ .+.|.
T Consensus        11 G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~   85 (86)
T cd05724          11 GEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDG--NLLIAEARKSDEGTYKCVATNMVGERESAAARLS   85 (86)
T ss_pred             CCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCC--EEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence            7899999998 799999999999999987532 22222333  7999999999999999999999998754 44443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.59  E-value=1.8e-14  Score=97.92  Aligned_cols=67  Identities=24%  Similarity=0.434  Sum_probs=54.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |++++|.|.+.|+|.|.|+|+|||..+... .......++  .|.|.++. .+|+|.|+|.|+|..|...+
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            568999999999999999999999998632 222233344  68888765 69999999999999998865

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.59  E-value=1e-14  Score=97.14  Aligned_cols=77  Identities=27%  Similarity=0.597  Sum_probs=64.3

Q ss_pred             eecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ....|+++.|.|.+.|.|.|.+.|+++|..+.......  .......|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            45679999999999999999999999998876543322  223346899999999999999999999999998888774

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.59  E-value=1.2e-14  Score=94.71  Aligned_cols=72  Identities=29%  Similarity=0.499  Sum_probs=55.3

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEc-cCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|.|.+.|.|.|.++|+|+|... .......+........|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~   73 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT   73 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence            368999999999999999988643 222111122222234899999999999999999999999988888775

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.58  E-value=1.5e-14  Score=94.39  Aligned_cols=70  Identities=30%  Similarity=0.477  Sum_probs=58.2

Q ss_pred             EEEEEEEcC-CCCCeEEEEECCEEccCCCcee---EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        207 LDLSAVVKG-DPEPRVSWTKNGQPLNSSNILD---LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       207 ~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      +.|.|.+.| .|.|.+.|+|+|..+.......   +........|.|.+++.+|+|.|+|.|.|..|.+..++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            479999999 9999999999999887654322   333344578999999999999999999999999887764

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.58  E-value=8.8e-15  Score=95.52  Aligned_cols=66  Identities=23%  Similarity=0.451  Sum_probs=50.3

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCC----CCCeEEEEEEEeCCceeEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKP----EDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |+|.|.+.|.|.|.|+|+|||.++... ...+........|.|.++..    +|+|.|+|.|.|..|.+.+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            589999999999999999999998532 21222222223778877753    7899999999999998754

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.58  E-value=3.3e-14  Score=95.55  Aligned_cols=76  Identities=39%  Similarity=0.588  Sum_probs=62.0

Q ss_pred             CCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        196 LTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      |.+..+.+|+++.|.|.+ .|.|.|.+.|+++|..+...........  ...|.|.+++.+|+|.|+|.|.|..|....
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--DGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            456788999999999998 7999999999999998876432211222  238999999999999999999999998654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.58  E-value=1.1e-14  Score=97.06  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=59.9

Q ss_pred             CCceEEEEEeccC--CCCeeEEeeCCEEcccCC----eeE--EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422          1 MQNVIKVKVGSTK--PPPTVKWYKGNRELSKRD----YSM--SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV   72 (356)
Q Consensus         1 g~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~----~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   72 (356)
                      |+++.|.|.+.|.  |.|.++|+++++.+....    +..  ........|+|.+++.+|+|.|+|.|.|..|..++++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            8999999999998  889999999887653221    111  11123458999999999999999999999999998888


Q ss_pred             EEE
Q psy12422         73 VIV   75 (356)
Q Consensus        73 l~v   75 (356)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.58  E-value=2.4e-14  Score=91.58  Aligned_cols=68  Identities=35%  Similarity=0.625  Sum_probs=56.3

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|.|.+.|.|+|.+.|+|++..+... +.... ..  ..|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~-~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL-DD--KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEe-eC--CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            479999999999999999998776543 22222 22  3799999999999999999999999998888774

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.57  E-value=3.8e-14  Score=92.26  Aligned_cols=65  Identities=28%  Similarity=0.441  Sum_probs=49.8

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEccc--C-CeeEEecCCeEEEEEeeCC----CCCCeEEEEEEEeCCceeEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSK--R-DYSMSYSDGVVSMEIIDCK----PEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~--~-~~~~~~~~~~~~L~i~~~~----~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      +.|.|.+.|+|.|.|+|+|||.++..  + ++.+...++  +|.|..+.    .+|+|.|+|.|.|..|.+.+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            57999999999999999999998742  2 333323344  78887764    246999999999999987654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.57  E-value=2.3e-14  Score=93.55  Aligned_cols=69  Identities=22%  Similarity=0.453  Sum_probs=54.7

Q ss_pred             eEEEEEec-cCCCCeeEEeeCCEEcccC-----CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422          4 VIKVKVGS-TKPPPTVKWYKGNRELSKR-----DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV   72 (356)
Q Consensus         4 v~l~C~~~-g~p~~~v~W~k~g~~l~~~-----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   72 (356)
                      +.|+|.+. +.|.+.++|||+|+++...     ++..........|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            57999985 4788999999999998532     122233344568999999999999999999999998877654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.57  E-value=5.5e-14  Score=95.10  Aligned_cols=84  Identities=26%  Similarity=0.433  Sum_probs=64.2

Q ss_pred             ccCCceeecCCCeEEEEEEEcCCCCCeEEEEE-CCEEccCCCceeEEE-eCCEEEEEEccCCCCCCeEEEEEEEcCCC-c
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLG-T  270 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-~  270 (356)
                      +.|....+..|+++.|.|.+.|.|+ .+.|++ ++..+.......... ....++|+|.+++.+|+|.|+|.|.|..| .
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~   83 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTE   83 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence            3455678999999999999999974 999998 676665534433322 23457899999999999999999999965 4


Q ss_pred             eEEEEEEe
Q psy12422        271 AETKCKLT  278 (356)
Q Consensus       271 ~~~~~~l~  278 (356)
                      ..+++.|.
T Consensus        84 ~~~sv~l~   91 (92)
T cd04977          84 SEATVNLK   91 (92)
T ss_pred             ceeEEEEE
Confidence            56666653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.57  E-value=3e-14  Score=92.70  Aligned_cols=65  Identities=23%  Similarity=0.463  Sum_probs=49.6

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCeEEEEEeeCCC----CCCeEEEEEEEeCCceeEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKP----EDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |.|.|.+.|.|.|+|+|+|||.++...   .+.....++  +|.|..+..    .|.|.|+|.|.|..|.+.+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            689999999999999999999988432   222223345  566766653    47899999999999987654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.57  E-value=2.7e-14  Score=97.68  Aligned_cols=73  Identities=26%  Similarity=0.403  Sum_probs=56.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC--eeEEecCCeEEEEEeeC-----CCCCCeEEEEEEEeC-CceeE-EEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDC-----KPEDSGEYKCVATNK-HGTDE-TNC   71 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~~~~~L~i~~~-----~~~D~G~Y~C~a~n~-~g~~~-~~~   71 (356)
                      |+++.|.|.+.|.|.|.|+|+|||..+....  +.....++  .|.|.++     +..|+|.|+|.|.|. .|... ..+
T Consensus        14 g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~   91 (95)
T cd05722          14 GGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--SLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTA   91 (95)
T ss_pred             CCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC--eEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeee
Confidence            7899999999999999999999999987432  12333444  4556655     589999999999999 99874 455


Q ss_pred             EEEE
Q psy12422         72 VVIV   75 (356)
Q Consensus        72 ~l~v   75 (356)
                      .|.|
T Consensus        92 ~l~v   95 (95)
T cd05722          92 RLTV   95 (95)
T ss_pred             EEeC
Confidence            5543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.57  E-value=2.8e-14  Score=96.41  Aligned_cols=76  Identities=26%  Similarity=0.480  Sum_probs=58.3

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEEC----CEEccCCCceeEE--E-------eCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKN----GQPLNSSNILDLK--Y-------KNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~----g~~~~~~~~~~~~--~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      |+++.|.|.+.|.|.|.|.|+++    |..+.........  .       ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            68899999999999999999983    4444322211111  1       112358999999999999999999999999


Q ss_pred             eEEEEEEec
Q psy12422        271 AETKCKLTP  279 (356)
Q Consensus       271 ~~~~~~l~p  279 (356)
                      ...++.|.+
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            988887753

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.57  E-value=2.7e-14  Score=94.71  Aligned_cols=76  Identities=13%  Similarity=0.175  Sum_probs=57.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC---eeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEeCCc--eeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD---YSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNKHG--TDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~---~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g--~~~~~~~l   73 (356)
                      ||+++|+|.+.|.|.+.+.|+++++......   ....  .....+.|+|.+++.+|+|.|+|.|.|..+  ...+++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            8999999999999999999999876432211   0111  122256899999999999999999999866  56677777


Q ss_pred             EEe
Q psy12422         74 IVE   76 (356)
Q Consensus        74 ~v~   76 (356)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.57  E-value=3.1e-14  Score=93.00  Aligned_cols=73  Identities=32%  Similarity=0.472  Sum_probs=60.8

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      +.|.|.+.|.|+|.+.|+|++..+.......+........|.|.+++.+|.|.|+|.|.|..|..+..+.|.+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV   73 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence            3689999999999999999999887654433444444458999999999999999999999999998888753

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.56  E-value=1.9e-14  Score=93.95  Aligned_cols=67  Identities=33%  Similarity=0.572  Sum_probs=52.6

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCC----CCCeEEEEEEEcCCCceEE
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP----EDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~n~~g~~~~  273 (356)
                      +.|.|.+.|+|.|.++|+|+|..+.......+......+.|.|.+++.    +|+|.|.|.|.|..|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            478999999999999999999988654332333333345888988854    7899999999999997654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.56  E-value=3.9e-14  Score=98.39  Aligned_cols=75  Identities=23%  Similarity=0.401  Sum_probs=56.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-----CeeEEecCC-eEEEEEe--eCCCCCCeEEEEEEEeCCce-eEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-----DYSMSYSDG-VVSMEII--DCKPEDSGEYKCVATNKHGT-DETNC   71 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-----~~~~~~~~~-~~~L~i~--~~~~~D~G~Y~C~a~n~~g~-~~~~~   71 (356)
                      |+++.|.|.+.|.|.|.|+|||+|..+...     .......++ ...+.|.  .++.+|+|.|+|.|.|..|. .+..+
T Consensus        16 G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~   95 (100)
T cd07693          16 GDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNA   95 (100)
T ss_pred             CCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceE
Confidence            789999999999999999999999998651     122223333 2333443  34689999999999999999 55667


Q ss_pred             EEEE
Q psy12422         72 VVIV   75 (356)
Q Consensus        72 ~l~v   75 (356)
                      .|.|
T Consensus        96 ~l~v   99 (100)
T cd07693          96 SLEV   99 (100)
T ss_pred             EEEe
Confidence            7665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.56  E-value=5e-14  Score=94.15  Aligned_cols=78  Identities=21%  Similarity=0.359  Sum_probs=60.8

Q ss_pred             CeEEEEEEEcCCCCC--eEEEEECCEEccCCC---ceeE-EEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        205 QCLDLSAVVKGDPEP--RVSWTKNGQPLNSSN---ILDL-KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       205 ~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~---~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +++.|.|.+.|.|.|  .+.|+++|..+....   .+.. ......+.|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999999987  579999999886432   1111 1122345899999999999999999999999999988887


Q ss_pred             cCCC
Q psy12422        279 PLNS  282 (356)
Q Consensus       279 p~~~  282 (356)
                      +..+
T Consensus        81 V~~p   84 (85)
T cd04970          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            5543

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.56  E-value=3.4e-14  Score=90.19  Aligned_cols=68  Identities=26%  Similarity=0.353  Sum_probs=54.7

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      +.|.|.+.|+|+|.+.|+|+|.++..... .+...+  .+|.|.+++.+|+|.|+|.|.|..........+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVDG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeCC--CEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            46899999999999999999999876432 222333  379999999999999999999997776665544

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.55  E-value=6.7e-14  Score=90.94  Aligned_cols=72  Identities=32%  Similarity=0.608  Sum_probs=59.3

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEE-CCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+... ...  .+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-~~~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV-YDN--GTLDILITTVKDTGSFTCIASNAAGEATATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE-ecC--CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            7889999999999999999997 6776655443322 222  3799999999999999999999999998887764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.55  E-value=4.7e-14  Score=92.54  Aligned_cols=78  Identities=17%  Similarity=0.290  Sum_probs=60.4

Q ss_pred             CeEEEEEEEcC--CCCCeEEEEECCEEccCC-CceeEEEe---CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        205 QCLDLSAVVKG--DPEPRVSWTKNGQPLNSS-NILDLKYK---NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       205 ~~~~l~C~~~g--~p~p~i~W~~~g~~~~~~-~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +++.|.|.+.+  .+++.|.|++||..+... ....+...   ...+.|.|.+++.+|+|.|+|.|.|.++...+++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            46899999966  557889999999999632 11122221   1234899999999999999999999999999999987


Q ss_pred             cCCC
Q psy12422        279 PLNS  282 (356)
Q Consensus       279 p~~~  282 (356)
                      +..+
T Consensus        81 V~~p   84 (85)
T cd05853          81 VRGP   84 (85)
T ss_pred             EecC
Confidence            5544

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.55  E-value=4.5e-14  Score=95.23  Aligned_cols=75  Identities=27%  Similarity=0.488  Sum_probs=56.9

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEEC----CEEccCCCce--eEE-------EeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKN----GQPLNSSNIL--DLK-------YKNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~----g~~~~~~~~~--~~~-------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      |+.+.|.|.+.|.|.|.|+|+|+    |..+......  ...       ..+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            67899999999999999999995    3333211111  111       1122358999999999999999999999999


Q ss_pred             eEEEEEEe
Q psy12422        271 AETKCKLT  278 (356)
Q Consensus       271 ~~~~~~l~  278 (356)
                      ..+++.|.
T Consensus        81 ~~~sa~L~   88 (90)
T cd04974          81 SHHSAWLT   88 (90)
T ss_pred             ccCCEEEE
Confidence            98888775

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.55  E-value=9.6e-14  Score=94.04  Aligned_cols=82  Identities=26%  Similarity=0.472  Sum_probs=61.1

Q ss_pred             CeecccCCceeecC---CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCC-CCCeEEEEEEE
Q psy12422        190 PQFANKLTDKTIDD---GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP-EDEGVYVCTAT  265 (356)
Q Consensus       190 p~~~~~~~~~~v~~---g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~  265 (356)
                      |.|...+.++.+.+   |..+.|.|.+.|+|.|.++|++++..+............+  .|.|.++.. +|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence            44555555554443   4679999999999999999999999885433233333333  788988874 89999999999


Q ss_pred             cCCCceEE
Q psy12422        266 NSLGTAET  273 (356)
Q Consensus       266 n~~g~~~~  273 (356)
                      |..|....
T Consensus        80 N~~G~~~S   87 (91)
T cd04967          80 NIVGTVLS   87 (91)
T ss_pred             cCCCEEEe
Confidence            99997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.55  E-value=4.5e-14  Score=95.52  Aligned_cols=74  Identities=23%  Similarity=0.415  Sum_probs=56.9

Q ss_pred             CCceEEEEEeccCCCCeeEEee-CCEEccc-CCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCc-eeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK-GNRELSK-RDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHG-TDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k-~g~~l~~-~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g-~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|+ .++|++ +|..+.. .++... ......+|+|.+++.+|+|.|+|.|.|..| ..++++.|.|
T Consensus        15 G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          15 GESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI   92 (92)
T ss_pred             CCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence            789999999999975 999998 6776654 333332 233456899999999999999999999864 4566666643

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.55  E-value=1.9e-13  Score=92.15  Aligned_cols=88  Identities=22%  Similarity=0.399  Sum_probs=71.1

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEccCC--CceeEEEe----CCEEEEEEccCCCCC-CeEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSS--NILDLKYK----NGVASLQIQEVFPED-EGVY  260 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~~--~~~~~~~~----~~~~~L~i~~v~~~d-~G~Y  260 (356)
                      ||.+ .....+.+.+|+.+.|.|.+.+.|+|. |.|..++..+...  .++.+...    +..+.|+|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            5666 455677899999999999999899875 8999988776543  45555443    356899999998877 7999


Q ss_pred             EEEEEcCCCceEEEEEE
Q psy12422        261 VCTATNSLGTAETKCKL  277 (356)
Q Consensus       261 ~C~a~n~~g~~~~~~~l  277 (356)
                      .|.|.|..|.+...+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999999988876

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.55  E-value=3.3e-14  Score=91.72  Aligned_cols=69  Identities=41%  Similarity=0.663  Sum_probs=56.7

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|.|.+.|+|.|.+.|++++..+.... .  ........|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   69 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-T--KFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVT   69 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-e--eEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEE
Confidence            4799999999999999999988775432 2  1222335899999999999999999999999988888774

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.54  E-value=4.9e-14  Score=91.73  Aligned_cols=67  Identities=34%  Similarity=0.554  Sum_probs=51.4

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCC----CCeEEEEEEEcCCCceEE
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPE----DEGVYVCTATNSLGTAET  273 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~----d~G~Y~C~a~n~~g~~~~  273 (356)
                      +.|.|.+.|+|.|.|+|+|+|..+..............++|.|..+..+    |.|.|+|.|.|..|...+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            4799999999999999999999875433322333333347888877653    789999999999998765

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.54  E-value=6.3e-14  Score=91.19  Aligned_cols=68  Identities=31%  Similarity=0.491  Sum_probs=50.5

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCC----CCCeEEEEEEEcCCCceEEE
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP----EDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      +.|.|.+.|+|.|.++|+|+|..+.......+.......+|.|..++.    +|+|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            468999999999999999999876432222222222335899987642    46999999999999976654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.54  E-value=3.8e-14  Score=95.82  Aligned_cols=79  Identities=18%  Similarity=0.240  Sum_probs=62.8

Q ss_pred             ceeecCCCeEEEEEEEcC-----CCCCeEEEEECCEEccCC--CceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        198 DKTIDDGQCLDLSAVVKG-----DPEPRVSWTKNGQPLNSS--NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g-----~p~p~i~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ...+.+|+.+.|.|.+.+     .|.|.|.|+|+|..+...  ....+...+  ..|.|.++..+|+|.|+|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecC--CeEEEccCCcccCeEEEEEEcCCCcc
Confidence            456778999999999998     688999999998664422  112222222  48999999999999999999999999


Q ss_pred             eEEEEEEe
Q psy12422        271 AETKCKLT  278 (356)
Q Consensus       271 ~~~~~~l~  278 (356)
                      .+..+.|.
T Consensus        86 ~~~~~~L~   93 (94)
T cd05756          86 MKVSISLT   93 (94)
T ss_pred             EEEEEEEE
Confidence            99888774

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.54  E-value=4.4e-14  Score=92.35  Aligned_cols=62  Identities=16%  Similarity=0.346  Sum_probs=50.4

Q ss_pred             CCceEEEEEeccCCCC-eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |+++.|.|.+.|.|.| +|+|+|||.++... .  ....  ..|.|..+  .|+|.|.|.|+|..|...+
T Consensus        13 G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-~--~~~~--s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          13 NTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-P--APSP--SVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCCEEEEEEeeeecCCeEEEEEECCEECCCC-C--CCCC--CEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            7899999999999999 79999999998641 1  1122  37888875  5899999999999997754

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.54  E-value=1.4e-13  Score=94.12  Aligned_cols=83  Identities=33%  Similarity=0.523  Sum_probs=62.3

Q ss_pred             cccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEE-EeCCEEEEEEccC-----CCCCCeEEEEEEEc
Q psy12422        193 ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK-YKNGVASLQIQEV-----FPEDEGVYVCTATN  266 (356)
Q Consensus       193 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~-~~~~~~~L~i~~v-----~~~d~G~Y~C~a~n  266 (356)
                      ...|.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+......... ..++  .|.|.++     +.+|.|.|.|.|.|
T Consensus         3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--SLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC--eEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            34456677889999999999999999999999999988754432111 2222  4666665     68899999999999


Q ss_pred             C-CCceE-EEEEE
Q psy12422        267 S-LGTAE-TKCKL  277 (356)
Q Consensus       267 ~-~g~~~-~~~~l  277 (356)
                      . .|... ..+.|
T Consensus        81 ~~~G~~~s~~~~l   93 (95)
T cd05722          81 DSLGSIVSRTARL   93 (95)
T ss_pred             CccCcEEEeeeEE
Confidence            9 99763 34444

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.53  E-value=9.7e-14  Score=95.38  Aligned_cols=73  Identities=19%  Similarity=0.317  Sum_probs=59.1

Q ss_pred             CCceEEEEEeccCCCC-eeEEeeCCEEcccC---CeeEEec----CCeEEEEEeeCCCCC-CeEEEEEEEeCCceeEEEE
Q psy12422          1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKR---DYSMSYS----DGVVSMEIIDCKPED-SGEYKCVATNKHGTDETNC   71 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~---~~~~~~~----~~~~~L~i~~~~~~D-~G~Y~C~a~n~~g~~~~~~   71 (356)
                      |+++.|.|.+.|.|.| .|.|++++..+...   ++.+...    .....|+|.+++.+| .|.|+|.|.|..|.+...+
T Consensus        16 G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~   95 (98)
T cd05758          16 GDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAII   95 (98)
T ss_pred             CCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEE
Confidence            7899999999999999 59999999988642   3433322    223589999999855 8999999999999988877


Q ss_pred             EE
Q psy12422         72 VV   73 (356)
Q Consensus        72 ~l   73 (356)
                      .|
T Consensus        96 ~L   97 (98)
T cd05758          96 SL   97 (98)
T ss_pred             Ee
Confidence            65

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.53  E-value=4.6e-14  Score=92.86  Aligned_cols=69  Identities=29%  Similarity=0.399  Sum_probs=50.9

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEc-c-------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEE
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNREL-S-------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVI   74 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l-~-------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~   74 (356)
                      |+|.|.+.|.|.|.|+|+|++... .       ...+.....++  +|.|.+++.+|+|.|.|.|.|..|.+ +..+.|.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG--SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC--eEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            689999999999999999964321 1       11111122333  79999999999999999999999987 4445544

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.53  E-value=3.6e-13  Score=99.04  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=32.0

Q ss_pred             EEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422         42 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus        42 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      +|+|.+++.+|+|.|.|.+.+..+.....+.|.|..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~   37 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE   37 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec
Confidence            699999999999999999999888888888888753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.53  E-value=8.2e-14  Score=94.16  Aligned_cols=74  Identities=28%  Similarity=0.505  Sum_probs=59.1

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEcc--------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLN--------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~--------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      |+.+.|.|.+.|+|.|.+.|+++|..+.        ...++..  . ....|.|.+++.+|+|.|.|.|.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v--~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV--S-QTGDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE--C-CCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            7889999999999999999999876431        1222222  1 123799999999999999999999999998888


Q ss_pred             EEecC
Q psy12422        276 KLTPL  280 (356)
Q Consensus       276 ~l~p~  280 (356)
                      .|.+.
T Consensus        78 ~l~V~   82 (90)
T cd05726          78 YLEVT   82 (90)
T ss_pred             EEEEe
Confidence            88744

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>KOG3515|consensus

Probab=99.53  E-value=1.3e-13  Score=122.86  Aligned_cols=319  Identities=18%  Similarity=0.228  Sum_probs=177.3

Q ss_pred             CCceEEEEEeccCCC-CeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE-EEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPP-PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~v~~~   78 (356)
                      ||.|.|.|.+.++|+ +.+.||+.++.+. .++.. ..+.  .|......++..+.|.|++.|..+.-.. ...+.+.++
T Consensus        22 g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~-~~~~--~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~   97 (741)
T KOG3515|consen   22 GEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYAT-IADP--TLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYP   97 (741)
T ss_pred             CCcceeeeecCCCCCCcceEEEecCcccc-ccccc-ccCC--ceeeecchhhhhhhhhhhhcccccCceecceeeccccC
Confidence            799999999976654 5899999988776 32222 2222  5666666677789999999998555432 244444443


Q ss_pred             ccchhhhhhcccccccCccceeeeccc----CCceeeecccccccCCcccc-------CCC--------CceEEEEeecc
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIR----PAPAIITTRQEIKSSYSSHT-------DDT--------GRTTTQMSTLS  139 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~----p~p~i~w~~~~~~~~~~~~~-------~~~--------~~~~~~~~~~~  139 (356)
                      +  ............++..+.+.|...    |.+.+.|..+..........       ...        ...........
T Consensus        98 p--a~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~  175 (741)
T KOG3515|consen   98 P--ACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADN  175 (741)
T ss_pred             c--cccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCC
Confidence            2  223334455567788899999654    77779998876544322210       000        01111233344


Q ss_pred             ccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCCC
Q psy12422        140 SNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPE  218 (356)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~  218 (356)
                      ++|.|.+.+......                 .......+.+..  ......+......+.+.+|+.+.|.|.+ .|+|.
T Consensus       176 g~~tC~A~nr~s~~l-----------------~~~~~~~i~v~~--~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~  236 (741)
T KOG3515|consen  176 GNYTCPANNRNSPGL-----------------SFAKQLTIIVEA--PCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPS  236 (741)
T ss_pred             ceeEcccccccCccc-----------------cccceeEeeccc--ccccceecchhhcCcccccceEEEEehhhcCCcc
Confidence            556666544322221                 112222222211  1122222222233678899999999987 67899


Q ss_pred             CeEEEEECCEEccCCCceeEEEeCC--EEEEEEccCCCCCCeEEEEEEEcCCCc-eEEEEEEecCCCC------------
Q psy12422        219 PRVSWTKNGQPLNSSNILDLKYKNG--VASLQIQEVFPEDEGVYVCTATNSLGT-AETKCKLTPLNSS------------  283 (356)
Q Consensus       219 p~i~W~~~g~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~p~~~~------------  283 (356)
                      +.+.|+++...+...+.......+.  .+++.+..-+.++.-...|.+.|.... ....+...|...+            
T Consensus       237 ~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~  316 (741)
T KOG3515|consen  237 QQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGR  316 (741)
T ss_pred             hhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCccccccccc
Confidence            9999999877665431111111111  134555555555566778999991111 1111111111000            


Q ss_pred             --ccc----------eeEEeC---------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceE--EEEEEE
Q psy12422        284 --NIL----------DLKYKN---------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAE--TKCKLT  328 (356)
Q Consensus       284 --~~~----------~~~~~~---------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~  328 (356)
                        ++.          .+.|.+                     ....+........|.|.|.|.|.|......  ..+.|.
T Consensus       317 s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~  396 (741)
T KOG3515|consen  317 SARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLP  396 (741)
T ss_pred             ccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceecc
Confidence              000          122221                     123466667778899999999999776543  366777


Q ss_pred             EEecCCCCCCCCCCcc
Q psy12422        329 VRSTPAANLGKSPSKE  344 (356)
Q Consensus       329 V~~~p~~~~~~~~~~~  344 (356)
                      +..+|+-.....+.+.
T Consensus       397 ~l~~p~~L~~~~~~v~  412 (741)
T KOG3515|consen  397 VLPSPAFLVRHKTAVV  412 (741)
T ss_pred             ccCCchhhhhccccee
Confidence            7777765444444433

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.52  E-value=8e-14  Score=90.56  Aligned_cols=73  Identities=23%  Similarity=0.324  Sum_probs=58.0

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      |.+...|....+.+|++++|.|.+.+.|.+ .+.|+|||..+..          ....|.|.++ .+|+|.|+|+|.|..
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~~   69 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGSS   69 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCCc
Confidence            345556677789999999999999998864 6999999988732          1237999999 999999999999874


Q ss_pred             CceEE
Q psy12422        269 GTAET  273 (356)
Q Consensus       269 g~~~~  273 (356)
                      -+...
T Consensus        70 ~S~~v   74 (78)
T cd05752          70 LSDPV   74 (78)
T ss_pred             CCCCE
Confidence            44433

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.52  E-value=1.1e-13  Score=91.89  Aligned_cols=75  Identities=27%  Similarity=0.516  Sum_probs=56.4

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCE---E--ccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQ---P--LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~---~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+.+.|.|.+.|.|.|.+.|+|++.   .  +................|.|.+++.+|+|.|.|.|.|..|....++.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            7889999999999999999999632   1  1111100001112235899999999999999999999999999888874

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.52  E-value=1.1e-13  Score=93.73  Aligned_cols=67  Identities=28%  Similarity=0.481  Sum_probs=53.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |+++.|.|.+.|+|.|.|+|+|+|..+... .......++  .|.|.++. .+|+|.|+|.|.|..|.+.+
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            357999999999999999999999998432 222333344  68898876 49999999999999998755

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.51  E-value=1.5e-13  Score=89.04  Aligned_cols=70  Identities=30%  Similarity=0.538  Sum_probs=53.3

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA-ETKCKL  277 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l  277 (356)
                      ++|.|.+.|+|.|.|.|+|++..+.......+... ....|.|.+++.+|+|.|.|.|.|..|.. ...+.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l   71 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL-RSGALQIENSEESDQGKYECVATNSAGTRYSAPANL   71 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc-CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEE
Confidence            37999999999999999999998863222122222 22379999999999999999999999974 333433

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.50  E-value=3.9e-13  Score=90.17  Aligned_cols=75  Identities=25%  Similarity=0.394  Sum_probs=61.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-ee-EEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.+.|.+.+.|+|++..+.... .. .........|.|.++..+|+|.|.|.+.|..|....++.|.|
T Consensus         9 G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v   85 (85)
T cd05729           9 GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV   85 (85)
T ss_pred             CCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence            7899999999999999999999999886432 11 122334458999999999999999999999999888877764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.50  E-value=3e-13  Score=88.30  Aligned_cols=70  Identities=27%  Similarity=0.480  Sum_probs=55.6

Q ss_pred             EEEEEEEc-CCCCCeEEEEECCEEccCCC----ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        207 LDLSAVVK-GDPEPRVSWTKNGQPLNSSN----ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       207 ~~l~C~~~-g~p~p~i~W~~~g~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      +.|.|.+. +.|.+.+.|+++|..+....    ++..........|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            47999986 47888999999999886432    223333344578999999999999999999999999887765

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.48  E-value=4.3e-13  Score=88.34  Aligned_cols=61  Identities=16%  Similarity=0.258  Sum_probs=49.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+++.|.|.+.+ |.+.|+|+|||.++..+.......++  .|.|.+++.+|+|.|+|.|.+..
T Consensus        11 G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~--~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          11 GNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRD--GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECC--cEEEeCCCHHHCEEEEEEEEecc
Confidence            789999999854 67899999999999765222334444  69999999999999999998863

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.47  E-value=4.2e-13  Score=90.69  Aligned_cols=73  Identities=12%  Similarity=0.182  Sum_probs=53.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEc---------ccCCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNREL---------SKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l---------~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |+++.|.|.+.|.|.|.|.|+|+++.+         ...++.... .....+|.|.+++.+|+|.|+|.+... -..++.
T Consensus        12 G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~-~~~~~~   90 (95)
T cd05882          12 GGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM-PVRTAK   90 (95)
T ss_pred             CCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-ccccEE
Confidence            899999999999999999999977543         112332222 223569999999999999999999773 233444


Q ss_pred             EEEE
Q psy12422         71 CVVI   74 (356)
Q Consensus        71 ~~l~   74 (356)
                      +.|+
T Consensus        91 ~~~~   94 (95)
T cd05882          91 ATVT   94 (95)
T ss_pred             EEEE
Confidence            4443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.47  E-value=3.8e-13  Score=89.64  Aligned_cols=75  Identities=20%  Similarity=0.317  Sum_probs=58.1

Q ss_pred             CCeEEEEEEEcCC--CCCeEEEEECCEEccCCCcee-----EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        204 GQCLDLSAVVKGD--PEPRVSWTKNGQPLNSSNILD-----LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       204 g~~~~l~C~~~g~--p~p~i~W~~~g~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      |+.+.|.|.+.|.  |.|.|.|++++..+.......     .......+.|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999998  888999998776554321110     011123468999999999999999999999999888877


Q ss_pred             Ee
Q psy12422        277 LT  278 (356)
Q Consensus       277 l~  278 (356)
                      +.
T Consensus        81 v~   82 (84)
T cd05742          81 VN   82 (84)
T ss_pred             EE
Confidence            64

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.46  E-value=4.8e-13  Score=89.81  Aligned_cols=72  Identities=22%  Similarity=0.341  Sum_probs=56.6

Q ss_pred             CCceEEEEEecc-----CCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGST-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g-----~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|...+     +|.|.+.|||||+++...++... .++  .|.|.++..+|+|.|+|.|.|..+.....+...+
T Consensus        10 g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~~~--~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~   86 (92)
T cd05757          10 TKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-KGS--KLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI   86 (92)
T ss_pred             ccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-cCC--EEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence            678999998732     36789999999999986654433 333  8999999999999999999998777665544444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.44  E-value=3.3e-12  Score=85.61  Aligned_cols=80  Identities=25%  Similarity=0.588  Sum_probs=65.1

Q ss_pred             eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE-EEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL-KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      +.+.+|+.+.|.|.+.++|.+.+.|++++..+........ ........|.|.+++.+|+|.|.|.|.|..|....++.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            3567899999999999999999999999988765443322 222334689999999999999999999999998888776


Q ss_pred             e
Q psy12422        278 T  278 (356)
Q Consensus       278 ~  278 (356)
                      .
T Consensus        84 ~   84 (85)
T cd05729          84 D   84 (85)
T ss_pred             e
Confidence            4

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.44  E-value=2.9e-13  Score=87.92  Aligned_cols=53  Identities=26%  Similarity=0.496  Sum_probs=44.8

Q ss_pred             CCceEEEEEeccCCCC-eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|+|.+.+.|.+ .+.|||||..+..       .+  ..|+|.++ .+|+|.|+|.|.|.
T Consensus        15 G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------~~--~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          15 GEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------TT--NSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCCEEEEEeCCCCCCCccEEEEECCEEeec-------cC--CeEEEeec-ccCCEEeEEECCCC
Confidence            8999999999988864 6999999998732       11  27899999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.44  E-value=1.1e-12  Score=87.74  Aligned_cols=77  Identities=29%  Similarity=0.410  Sum_probs=62.4

Q ss_pred             cCCceeecCCCeEEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      .+....+.+|++++|.|.+.+ .|.+.+.|++++..+....    ..  ....|.|.+++.+|+|.|.|.|.|..|...+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~~--~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----MD--FNGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----cc--cCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            345667899999999999964 7888999999886654321    11  1248999999999999999999999999988


Q ss_pred             EEEE
Q psy12422        274 KCKL  277 (356)
Q Consensus       274 ~~~l  277 (356)
                      .+.|
T Consensus        81 ~~~l   84 (85)
T cd05754          81 TATL   84 (85)
T ss_pred             EEEE
Confidence            8765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.43  E-value=2.5e-12  Score=86.91  Aligned_cols=70  Identities=24%  Similarity=0.380  Sum_probs=54.6

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc-c-------CCCceeEE-EeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL-N-------SSNILDLK-YKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~-~-------~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      .++++.+|+++.|.|.+.+.|.|.|.|++++..+ .       ...++... .......|.|.+++.+|+|.|+|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            4678999999999999999999999999876532 1       12233222 122357999999999999999999988

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.42  E-value=1.3e-12  Score=88.16  Aligned_cols=73  Identities=15%  Similarity=0.246  Sum_probs=56.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC---eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC-CceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK-HGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~-~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.+ |.+.+.|||++..+....   .......+  .|.|.+++.+|+|.|.|.|.+. .+....++.|.|.
T Consensus        11 g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~   87 (89)
T cd04979          11 GNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTED--GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL   87 (89)
T ss_pred             CCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCC--CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence            789999999977 888999999998776431   12222222  5899999999999999999875 4555666777775

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.42  E-value=2.1e-12  Score=85.64  Aligned_cols=75  Identities=24%  Similarity=0.406  Sum_probs=55.3

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEccCCC----ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC--ceEEEEEE
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN----ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG--TAETKCKL  277 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g--~~~~~~~l  277 (356)
                      |+++.|.|.+.+.|.+.+.|++.+.......    ..........++|.|.+++.+|+|.|.|.|.|..+  ....++.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7899999999999999999998775432211    11111112246899999999999999999999876  55666655


Q ss_pred             e
Q psy12422        278 T  278 (356)
Q Consensus       278 ~  278 (356)
                      .
T Consensus        81 ~   81 (84)
T cd05861          81 T   81 (84)
T ss_pred             E
Confidence            4

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.42  E-value=1e-12  Score=87.85  Aligned_cols=68  Identities=22%  Similarity=0.328  Sum_probs=56.0

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   73 (356)
                      |++++|.|.+.+ .|.+.+.|+|++..+....   ...+  ..|.|.+++.+|+|.|.|.|.|..|...+++.|
T Consensus        16 G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~~~~--~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          16 GADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---MDFN--GILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             CCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---cccC--CEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            789999999964 7889999999987765321   1222  379999999999999999999999998887765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.42  E-value=1.8e-12  Score=87.95  Aligned_cols=74  Identities=15%  Similarity=0.176  Sum_probs=53.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCE---------EcccCCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNR---------ELSKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~---------~l~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |+++.|.|.+.+.|.+.+.||+.++         .+...++.... ..+..+|+|.+++.+|+|.|+|.+.+..+. ...
T Consensus        12 G~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~-~~~   90 (95)
T cd07701          12 GGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVK-TSK   90 (95)
T ss_pred             CCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCc-cEE
Confidence            7999999999999999999987322         12223443322 235579999999999999999999875333 555


Q ss_pred             EEEEE
Q psy12422         71 CVVIV   75 (356)
Q Consensus        71 ~~l~v   75 (356)
                      ..|.|
T Consensus        91 ~~l~v   95 (95)
T cd07701          91 AYLTV   95 (95)
T ss_pred             EEEEC
Confidence            55543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.41  E-value=3.9e-12  Score=83.81  Aligned_cols=69  Identities=22%  Similarity=0.309  Sum_probs=56.4

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      |.+..+..|+++.|.|.+.+ |.+.+.|++||.++...... +....+  .|.|.+++.+|+|.|+|.|.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r-~~~~~~--~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAK-YLLYRD--GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCce-EEEECC--cEEEeCCCHHHCEEEEEEEEecc
Confidence            45678999999999999864 67899999999999765322 223333  69999999999999999998875

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.40  E-value=2.3e-12  Score=84.74  Aligned_cols=68  Identities=26%  Similarity=0.528  Sum_probs=50.0

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEcc--------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLN--------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA-ETKCKL  277 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~--------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l  277 (356)
                      ++|.|.+.|+|.|.+.|++++....        ...++.. ..  ..+|.|.++..+|+|.|.|.|.|..|.+ ...+.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~-~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL-LS--NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE-ec--CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            4799999999999999999643211        1122222 12  2489999999999999999999999976 444443

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.38  E-value=3.5e-12  Score=85.63  Aligned_cols=76  Identities=20%  Similarity=0.216  Sum_probs=60.4

Q ss_pred             ceeecCCCeEEEEEEEcC-----CCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        198 DKTIDDGQCLDLSAVVKG-----DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g-----~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      .+.+.+|+...|.|...+     +|.|.+.|+||+.++........    ....|.|.+++.+|+|.|+|.|.|..+...
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~   79 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence            356788999999998743     36789999999999876543322    234899999999999999999999998876


Q ss_pred             EEEEE
Q psy12422        273 TKCKL  277 (356)
Q Consensus       273 ~~~~l  277 (356)
                      ..+..
T Consensus        80 ~~~t~   84 (92)
T cd05757          80 YNVTR   84 (92)
T ss_pred             EEEEE
Confidence            65544

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.38  E-value=1.9e-12  Score=86.49  Aligned_cols=73  Identities=19%  Similarity=0.222  Sum_probs=57.5

Q ss_pred             CceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEc--cCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        197 TDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPL--NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      ....+.+|+.+.|.|.. .|+|.|.+.|++++..+  ..+.+..+..  ..+.|.|.+++++|+|.|+|.|.|.....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            34578899999999987 89999999999998754  2223332222  23489999999999999999999988654

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.37  E-value=1.8e-12  Score=86.60  Aligned_cols=65  Identities=17%  Similarity=0.287  Sum_probs=52.2

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEc--ccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNREL--SKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l--~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      |+.+.|.|.. .|.|.+.|.|+|++.++  ..+ +..+...+|  .|.|.+|+.+|+|.|+|.|+|.....
T Consensus        18 G~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          18 GWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence            7899999987 89999999999998765  222 333333455  89999999999999999999976543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.37  E-value=5.2e-12  Score=79.26  Aligned_cols=62  Identities=32%  Similarity=0.516  Sum_probs=50.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |+++.|.|.+.+.|.+.+.|++++..+.. ..  ........|.|.+++.+|+|.|+|.+.|..|
T Consensus         2 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        2 GQSVTLTCPAEGDPVPNITWLKDGKPLPE-SN--RLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CceEEEEeeCccCCCCeEEEEECCEECCC-CC--EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            78999999998899999999999998872 21  1222334899999999999999999998754

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.36  E-value=1.2e-11  Score=83.94  Aligned_cols=80  Identities=21%  Similarity=0.324  Sum_probs=58.4

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEEC--------CEEccCCCceeEEE-eCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--------GQPLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--------g~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .++.+.+|+++.|.|.+.+.|.+.+.|++.        +.......++.... .....+|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            567899999999999999999999999862        22222233443322 234578999999999999999999985


Q ss_pred             CCceEEEEEE
Q psy12422        268 LGTAETKCKL  277 (356)
Q Consensus       268 ~g~~~~~~~l  277 (356)
                      .+. ..+..|
T Consensus        85 ~~~-~~~~~l   93 (95)
T cd07701          85 PVK-TSKAYL   93 (95)
T ss_pred             cCc-cEEEEE
Confidence            433 444444

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.36  E-value=5.4e-12  Score=83.99  Aligned_cols=76  Identities=14%  Similarity=0.244  Sum_probs=57.7

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeCCEEccc----CCeeE---EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKGNRELSK----RDYSM---SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC   71 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~g~~l~~----~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   71 (356)
                      |+++.|.|.+.+.|.  ..+.|.+.++.+..    .....   ......+.|+|.+++.+|+|.|+|.|.|..|...+..
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            899999999977654  47899987764421    11001   1122356899999999999999999999999888888


Q ss_pred             EEEEe
Q psy12422         72 VVIVE   76 (356)
Q Consensus        72 ~l~v~   76 (356)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            88875

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.36  E-value=1e-11  Score=83.79  Aligned_cols=73  Identities=18%  Similarity=0.303  Sum_probs=58.9

Q ss_pred             CCceEEEEEeccCCCC-eeEEeeCCEEccc---CCeeEEec----CCeEEEEEeeCCCCC-CeEEEEEEEeCCceeEEEE
Q psy12422          1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSK---RDYSMSYS----DGVVSMEIIDCKPED-SGEYKCVATNKHGTDETNC   71 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~---~~~~~~~~----~~~~~L~i~~~~~~D-~G~Y~C~a~n~~g~~~~~~   71 (356)
                      ||+++|.|.+.+.|+| .|.|..++..+..   .++.+...    +..+.|+|.++...| .|.|.|.|.|..|.+...+
T Consensus        16 G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i   95 (98)
T cd05898          16 GERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAII   95 (98)
T ss_pred             CCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEE
Confidence            8999999999888887 4799998887754   34555433    356799999998777 7999999999999998777


Q ss_pred             EE
Q psy12422         72 VV   73 (356)
Q Consensus        72 ~l   73 (356)
                      .|
T Consensus        96 ~L   97 (98)
T cd05898          96 QL   97 (98)
T ss_pred             Ee
Confidence            65

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.35  E-value=3.4e-12  Score=84.30  Aligned_cols=61  Identities=20%  Similarity=0.256  Sum_probs=49.8

Q ss_pred             CCceEEEEEec-cCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE
Q psy12422          1 MQNVIKVKVGS-TKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE   68 (356)
Q Consensus         1 g~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~   68 (356)
                      |++|+|+|.+. +.|.+.+.|||+|..+..       ......|.|.+++.+|+|.|+|.+.+..|...
T Consensus        14 G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753          14 GEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             CCCEEEEeeCCCCCcceEEEEEECCeEccc-------cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence            79999999984 567778999999987642       11234799999999999999999999987543

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.35  E-value=3.8e-12  Score=85.41  Aligned_cols=66  Identities=20%  Similarity=0.208  Sum_probs=50.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEc-c--------------cCCeeEEe---cCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNREL-S--------------KRDYSMSY---SDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l-~--------------~~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.+.+.|.+.+.||++++.. .              .+++....   ..+.++|+|.+++.+|+|.|.|.+.|
T Consensus         7 G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~   86 (94)
T cd07690           7 GDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVED   86 (94)
T ss_pred             CCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECC
Confidence            899999999999999999999876332 1              11222222   45667899999999999999999988


Q ss_pred             CCce
Q psy12422         63 KHGT   66 (356)
Q Consensus        63 ~~g~   66 (356)
                      ..+.
T Consensus        87 ~~~~   90 (94)
T cd07690          87 KKEE   90 (94)
T ss_pred             ccce
Confidence            7654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.34  E-value=6.7e-12  Score=84.62  Aligned_cols=80  Identities=25%  Similarity=0.345  Sum_probs=60.0

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCc--eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC-CceEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI--LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL-GTAET  273 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~-g~~~~  273 (356)
                      ..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+.....  .......  ..|.|.+++.+|+|.|.|.|.|.. +....
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence            4567889999999999987 8889999999987765421  1122222  259999999999999999998765 44555


Q ss_pred             EEEEec
Q psy12422        274 KCKLTP  279 (356)
Q Consensus       274 ~~~l~p  279 (356)
                      ++.|.+
T Consensus        81 ~~~l~V   86 (89)
T cd04979          81 TYSLNV   86 (89)
T ss_pred             EEEEEE
Confidence            666654

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.34  E-value=7.2e-12  Score=80.60  Aligned_cols=64  Identities=17%  Similarity=0.275  Sum_probs=49.6

Q ss_pred             ceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCC----eEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          3 NVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         3 ~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      .++|+|.+ .|+|++.|+|||||++|..... ....++    ...|+|...+.+|.+.|+|+|.|..+..
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            47899999 7899999999999999964321 111221    2369999889999999999999987654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.32  E-value=4.1e-12  Score=79.93  Aligned_cols=60  Identities=32%  Similarity=0.514  Sum_probs=46.7

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCCeE---EEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++++|.|.+ .+.|.+.+.|+|+++.+...........+..   .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            8999999999 7888889999999887764432222222221   2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.31  E-value=2e-11  Score=83.38  Aligned_cols=74  Identities=16%  Similarity=0.256  Sum_probs=53.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCE---------EcccCCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNR---------ELSKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~---------~l~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |++++|.|.+.+.|.+.+.|++.+.         .+...++... ..+..++|+|.+++.+|+|.|.|.+.+... ..+.
T Consensus        12 G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~   90 (95)
T cd05717          12 GGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-QTAK   90 (95)
T ss_pred             CCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-ceEE
Confidence            8999999999888889999986322         1222333332 223456899999999999999999987653 3555


Q ss_pred             EEEEE
Q psy12422         71 CVVIV   75 (356)
Q Consensus        71 ~~l~v   75 (356)
                      +.|.|
T Consensus        91 ~~~~v   95 (95)
T cd05717          91 ATVTV   95 (95)
T ss_pred             EEEEC
Confidence            55543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.30  E-value=2e-11  Score=81.87  Aligned_cols=74  Identities=18%  Similarity=0.275  Sum_probs=56.2

Q ss_pred             eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC--------------CCceeEEE---eCCEEEEEEccCCCCCCeEEE
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS--------------SNILDLKY---KNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~--------------~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      +.+.+|++++|.|.+.+.+.+.+.|++++.....              .+++....   ..+...|+|.+++.+|+|+|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            3578899999999999999999999976633211              11222222   344578999999999999999


Q ss_pred             EEEEcCCCceE
Q psy12422        262 CTATNSLGTAE  272 (356)
Q Consensus       262 C~a~n~~g~~~  272 (356)
                      |.+.|..+..+
T Consensus        82 C~v~~~~~~~~   92 (94)
T cd07690          82 CEVEDKKEEVE   92 (94)
T ss_pred             EEECCccceEE
Confidence            99999887654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.29  E-value=2.6e-11  Score=76.06  Aligned_cols=63  Identities=38%  Similarity=0.729  Sum_probs=51.8

Q ss_pred             CCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       203 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      +|+++.|.|.+.+.|.+.+.|++++..+..  ..  ........|.|.+++.+|+|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SN--RLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CC--EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            488999999999999999999999988772  11  1223345899999999999999999999765

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.27  E-value=2.8e-11  Score=81.00  Aligned_cols=67  Identities=25%  Similarity=0.344  Sum_probs=49.6

Q ss_pred             CCceEEEEEe-c----cCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVG-S----TKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~-~----g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      |.+..|.|.- .    ..+.|.|+||||+.++...........+...|.|.+++.+|+|.|+|.|.+..|..
T Consensus        10 ~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897          10 STSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             ccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            4577899973 2    34678999999999987543222221223379999999999999999999986544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.26  E-value=5.5e-11  Score=79.85  Aligned_cols=72  Identities=14%  Similarity=0.266  Sum_probs=53.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--EEcc----cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE-eCCceeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--RELS----KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT-NKHGTDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~~l~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~-n~~g~~~~~~~l   73 (356)
                      |+++.|.|.. +.|.|.+.|||++  ....    ... .....++  .|.|.+++.+|+|.|+|.|. |..+.....+.|
T Consensus        11 G~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~-r~~~~~~--~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l   86 (91)
T cd05871          11 NNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEE-RLIHTER--GLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTL   86 (91)
T ss_pred             CCcEEEEEEC-CCCCceEEEEEECCCCCccccccccc-cEEEecC--eEEEeeCChhHCEEEEEEEEccCCeEEEEEEEE
Confidence            7899999997 5889999999843  2211    111 1222333  69999999999999999998 567777777777


Q ss_pred             EEe
Q psy12422         74 IVE   76 (356)
Q Consensus        74 ~v~   76 (356)
                      .|.
T Consensus        87 ~v~   89 (91)
T cd05871          87 HVI   89 (91)
T ss_pred             EEe
Confidence            775

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.26  E-value=3e-11  Score=80.59  Aligned_cols=73  Identities=15%  Similarity=0.219  Sum_probs=57.2

Q ss_pred             CCceeecCCCeEEEEEE-EcCCCCCeEEEEECCEEc-cCCCceeEEEeCCEEEEEEccCCCCCCe-EEEEEEEcCCCce
Q psy12422        196 LTDKTIDDGQCLDLSAV-VKGDPEPRVSWTKNGQPL-NSSNILDLKYKNGVASLQIQEVFPEDEG-VYVCTATNSLGTA  271 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~-~~g~p~p~i~W~~~g~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~g~~  271 (356)
                      ...+.+.+|+.+.|.|. ..|+|.|.|.|++++... ....++.  .. ..+.|.|.+++.+|+| .|.|.|.|.....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~--~~-~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVS--MG-QNGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEE--EC-CCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence            36678999999999997 599999999999876543 3233322  22 2258999999999999 8999999987654

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>smart00410 IG_like Immunoglobulin like

Probab=99.25  E-value=1.9e-10  Score=77.09  Aligned_cols=75  Identities=35%  Similarity=0.582  Sum_probs=61.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC-CEEcc-cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG-NRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~-g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.+.+.+.+.|+++ +..+. ..+...........|.|.+++.+|+|.|.|.+.+..+.....+.|.|
T Consensus         9 g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00410        9 GESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             CCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            78999999998888899999998 88886 33444444444568999999999999999999998888777777665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.25  E-value=1.9e-10  Score=77.09  Aligned_cols=75  Identities=35%  Similarity=0.582  Sum_probs=61.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC-CEEcc-cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG-NRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~-g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.+.+.+.+.|+++ +..+. ..+...........|.|.+++.+|+|.|.|.+.+..+.....+.|.|
T Consensus         9 g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00409        9 GESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             CCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            78999999998888899999998 88886 33444444444568999999999999999999998888777777665

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.24  E-value=1.6e-10  Score=77.29  Aligned_cols=82  Identities=22%  Similarity=0.329  Sum_probs=66.5

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEccCCCceeEEEeC-----CEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNILDLKYKN-----GVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ..+.|.+|+.+.|.|.++++|+|. +.|.+++..+.......+....     -.+.|.+..+..+|+|.|+|.|.|..+.
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            456899999999999999999998 9999988766544332222222     1378999999999999999999999999


Q ss_pred             eEEEEEEe
Q psy12422        271 AETKCKLT  278 (356)
Q Consensus       271 ~~~~~~l~  278 (356)
                      ...++.|.
T Consensus        91 ~s~tF~l~   98 (101)
T cd05860          91 ASVTFNVY   98 (101)
T ss_pred             EEEEEEEE
Confidence            98888774

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.23  E-value=6.3e-11  Score=79.38  Aligned_cols=73  Identities=21%  Similarity=0.194  Sum_probs=53.9

Q ss_pred             CCceEEEEEec-----------cCCCCeeEEeeCCEEcccCC------eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGS-----------TKPPPTVKWYKGNRELSKRD------YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~-----------g~p~~~v~W~k~g~~l~~~~------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      ||+|.|.|...           ..+...++|||++..+....      .++...+.  .|.|.++..+|+|.|+|+++|.
T Consensus        15 GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C~~rN~   92 (104)
T cd05896          15 GEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTCVLRNS   92 (104)
T ss_pred             CCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEEEECCC
Confidence            89999999961           12234799999975554321      12333444  8999999999999999999999


Q ss_pred             CceeEEEEEEEE
Q psy12422         64 HGTDETNCVVIV   75 (356)
Q Consensus        64 ~g~~~~~~~l~v   75 (356)
                      ......++.|+|
T Consensus        93 t~C~~~~i~l~V  104 (104)
T cd05896          93 TYCMKVSMSLTV  104 (104)
T ss_pred             CcceEEEEEEEC
Confidence            877777776654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.23  E-value=4.9e-11  Score=78.77  Aligned_cols=66  Identities=20%  Similarity=0.291  Sum_probs=53.5

Q ss_pred             ceeecCCCeEEEEEEEc-CCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        198 DKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      ...+.+|+.++|.|.+. +.+.+.+.|+|+|..+...        .....|.|.+++.+|+|.|.|.|.|..+..
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            34688999999999995 4667789999999766421        123479999999999999999999999743

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.23  E-value=5.9e-11  Score=78.50  Aligned_cols=66  Identities=35%  Similarity=0.591  Sum_probs=52.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc-eeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG-TDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g-~~~~~~~l~v   75 (356)
                      |+++.|.|.+.+.|.+.+.|++++..+.....         .|.|.+++.+|+|.|+|.+.+..+ ..+..+.|.|
T Consensus        14 g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   14 GDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN---------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             TSEEEEEEEEESSSSSEEEEEETTEEEEEESS---------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEcccceeeeeeeeeeeeeeeee---------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            78999999999999999999999988763221         277788999999999999999654 4455566654

...

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.22  E-value=1.6e-10  Score=77.24  Aligned_cols=76  Identities=20%  Similarity=0.291  Sum_probs=61.6

Q ss_pred             CCceEEEEEeccCCCCe-eEEeeCCEEcccC-CeeEEecC-----CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPT-VKWYKGNRELSKR-DYSMSYSD-----GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~-v~W~k~g~~l~~~-~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   73 (356)
                      ||++.|.|.+.++|+|. +.|.+++..+... .......+     ..+.|++.-++.+|.|.|+|.|.|....++.++.|
T Consensus        18 gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l   97 (101)
T cd05860          18 GENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNV   97 (101)
T ss_pred             CCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEE
Confidence            79999999999999998 9999998877532 11122211     33689999999999999999999999999888888


Q ss_pred             EEe
Q psy12422         74 IVE   76 (356)
Q Consensus        74 ~v~   76 (356)
                      .|.
T Consensus        98 ~v~  100 (101)
T cd05860          98 YVN  100 (101)
T ss_pred             EEe
Confidence            764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.21  E-value=5.7e-11  Score=74.69  Aligned_cols=61  Identities=34%  Similarity=0.651  Sum_probs=47.7

Q ss_pred             CCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeCCE--EEEEEccCCCCCCeEEEEEE
Q psy12422        204 GQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNGV--ASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       204 g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      |++++|.|.+ .+.+.+.+.|++++.................  ..|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 7788889999999877665444333333321  13999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>smart00409 IG Immunoglobulin

Probab=99.21  E-value=7.7e-10  Score=74.03  Aligned_cols=81  Identities=38%  Similarity=0.672  Sum_probs=66.8

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEEC-CEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKN-GQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~-g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+................|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            45678899999999998888889999998 88776555555555554678999999999999999999998888777665


Q ss_pred             Ee
Q psy12422        277 LT  278 (356)
Q Consensus       277 l~  278 (356)
                      |.
T Consensus        83 l~   84 (86)
T smart00409       83 LT   84 (86)
T ss_pred             EE
Confidence            53

>smart00410 IG_like Immunoglobulin like

Probab=99.21  E-value=7.7e-10  Score=74.03  Aligned_cols=81  Identities=38%  Similarity=0.672  Sum_probs=66.8

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEEC-CEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKN-GQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~-g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+................|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            45678899999999998888889999998 88776555555555554678999999999999999999998888777665


Q ss_pred             Ee
Q psy12422        277 LT  278 (356)
Q Consensus       277 l~  278 (356)
                      |.
T Consensus        83 l~   84 (86)
T smart00410       83 LT   84 (86)
T ss_pred             EE
Confidence            53

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.19  E-value=4e-10  Score=76.97  Aligned_cols=80  Identities=25%  Similarity=0.397  Sum_probs=56.4

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCE-Ec-------cCCCceeEE-EeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ-PL-------NSSNILDLK-YKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~-~~-------~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .+..+.+|++++|.|.+.+.|.+.+.|++.+. .+       ....++... .......|.|.+++.+|+|.|.|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            45678999999999999888889999985221 11       112233221 1234568999999999999999999987


Q ss_pred             CCceEEEEEE
Q psy12422        268 LGTAETKCKL  277 (356)
Q Consensus       268 ~g~~~~~~~l  277 (356)
                      .. ..++..|
T Consensus        85 ~~-~~~~~~~   93 (95)
T cd05717          85 PV-QTAKATV   93 (95)
T ss_pred             CC-ceEEEEE
Confidence            64 3444444

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.19  E-value=5.8e-11  Score=79.20  Aligned_cols=64  Identities=14%  Similarity=0.193  Sum_probs=50.5

Q ss_pred             CCceEEEEE-eccCCCCeeEEeeCCEEc-ccCCeeEEecCCeEEEEEeeCCCCCCe-EEEEEEEeCCce
Q psy12422          1 MQNVIKVKV-GSTKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~-~~g~p~~~v~W~k~g~~l-~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~g~   66 (356)
                      |+.+.|.|. ..|.|.|.|.|++++... ..+.+.....+|  .|.|.+++.+|+| .|.|.|.|....
T Consensus        18 G~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G--nL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          18 GDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG--NLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             CCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc--eEEEEEEehhhCCCCeEEEEEccccc
Confidence            789999998 599999999999977553 333333333445  8999999999999 899999997543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.18  E-value=1.5e-10  Score=74.46  Aligned_cols=64  Identities=11%  Similarity=0.269  Sum_probs=50.3

Q ss_pred             eEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeC----CEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        206 CLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKN----GVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       206 ~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      .++|+|.. .|+|++.|+||+++.++......  ...+    ..++|.+...+.+|.+.|+|+|.|.++..
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~--~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQ--QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCccc--ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            36899998 77999999999999999754211  1111    13579999999999999999999998853

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.16  E-value=2.3e-10  Score=76.15  Aligned_cols=75  Identities=20%  Similarity=0.255  Sum_probs=54.0

Q ss_pred             CCeEEEEEEEcCCC--CCeEEEEECCEEccCCCc------eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        204 GQCLDLSAVVKGDP--EPRVSWTKNGQPLNSSNI------LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       204 g~~~~l~C~~~g~p--~p~i~W~~~g~~~~~~~~------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      |+++.|.|.+.+.|  ...+.|...+........      .........++|.|.+++.+|+|.|+|.|.|..|......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            78899999998765  456899887754321110      0001112346899999999999999999999999877776


Q ss_pred             EEe
Q psy12422        276 KLT  278 (356)
Q Consensus       276 ~l~  278 (356)
                      .|.
T Consensus        81 ~~~   83 (86)
T cd05862          81 IVI   83 (86)
T ss_pred             EEE
Confidence            664

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.16  E-value=1.5e-10  Score=77.48  Aligned_cols=74  Identities=18%  Similarity=0.191  Sum_probs=56.3

Q ss_pred             eeecCCCeEEEEEEE-cCC----CCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        199 KTIDDGQCLDLSAVV-KGD----PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~-~g~----p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      +.+.+|.+..|.|.- +++    +.|.+.|+||+.++...+.......+ ...|.|.+++.+|+|.|+|+|.+..|....
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~-~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y   83 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG-STYLHIIDVSLNDSGYYTCKLQFTHEGKKY   83 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC-CCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence            457789999999973 444    67789999999998755433222122 347999999999999999999999876544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.16  E-value=2.4e-10  Score=76.76  Aligned_cols=77  Identities=22%  Similarity=0.310  Sum_probs=55.1

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEcc----CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE-cCCCc
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLN----SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT-NSLGT  270 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-n~~g~  270 (356)
                      .+.+.+|+++.|.|.. +.|.|.+.|++.  +....    ...+.  ....  ..|.|.+++.+|+|.|.|.|. |..+.
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~--~~~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~   79 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERL--IHTE--RGLLLRSLQRSDAGVYTCTAVEHSFSQ   79 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccE--EEec--CeEEEeeCChhHCEEEEEEEEccCCeE
Confidence            3568899999999997 488999999983  22211    11222  2222  369999999999999999998 56666


Q ss_pred             eEEEEEEec
Q psy12422        271 AETKCKLTP  279 (356)
Q Consensus       271 ~~~~~~l~p  279 (356)
                      ...++.|.+
T Consensus        80 ~~~~~~l~v   88 (91)
T cd05871          80 TLAKYTLHV   88 (91)
T ss_pred             EEEEEEEEE
Confidence            666666653

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.15  E-value=2.7e-10  Score=75.30  Aligned_cols=76  Identities=38%  Similarity=0.783  Sum_probs=57.2

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |.+...+  ..+.+|+.+.|.|.+.+.|.+.+.|++++..+....        +  .|.+.+++.+|+|.|+|.|.+..+
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--------~--~~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ--------N--GLFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--------S--EEEESSEEGGGTEEEEEEEEETTE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--------e--eeeeeeeccccCEEEEEEEEeCCC
Confidence            4444333  568999999999999999999999999987775221        1  277889999999999999999665


Q ss_pred             c-eEEEEEE
Q psy12422        270 T-AETKCKL  277 (356)
Q Consensus       270 ~-~~~~~~l  277 (356)
                      . ....+.|
T Consensus        70 ~~~s~~~~v   78 (80)
T PF13895_consen   70 SNTSTSVNV   78 (80)
T ss_dssp             EEEEEEEEE
T ss_pred             CeEeeeEEe
Confidence            3 3344443

...

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.14  E-value=5.1e-10  Score=74.11  Aligned_cols=65  Identities=20%  Similarity=0.354  Sum_probs=47.3

Q ss_pred             ceEEEEEecc-CCCCeeEEeeCCEEcccCCeeE-EecCC-----eEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          3 NVIKVKVGST-KPPPTVKWYKGNRELSKRDYSM-SYSDG-----VVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         3 ~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~-~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      .+.|+|.+.| .|.+.|+|+|+|+++....... ...++     ...|.|.....+|.|.|+|.|.|.....
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            4789999966 7989999999999986543211 11222     2367888777788899999999875433

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.10  E-value=1.5e-09  Score=72.80  Aligned_cols=63  Identities=14%  Similarity=0.227  Sum_probs=48.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEE---------cccCCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRE---------LSKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~---------l~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |+++.|+|.+.+.....+.|++-+..         ....++.... .+...+|+|.+++.+|+|.|.|.+...
T Consensus        12 G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881          12 GEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            89999999998876667788775533         2233454443 456679999999999999999999764

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.07  E-value=1.1e-09  Score=71.58  Aligned_cols=71  Identities=18%  Similarity=0.219  Sum_probs=52.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE-eCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT-NKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~-n~~g~~~~~~~l~v   75 (356)
                      |+.+.|.|...+. .+.+.|++||.++..+.+.....+|   |.|..++.+|+|.|.|.+. ++......+..|.|
T Consensus        11 g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G---LlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v   82 (85)
T cd05872          11 GADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG---LLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV   82 (85)
T ss_pred             CCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC---CEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence            6889999999765 6799999999998755433334444   6799999999999999985 33334444444444

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PHA03376 BARF1; Provisional

Probab=99.07  E-value=1.6e-08  Score=74.18  Aligned_cols=65  Identities=15%  Similarity=0.203  Sum_probs=45.8

Q ss_pred             CCceEEEEEec---cCCCCeeEEeeCC----EEc--------c--c--C--CeeEEecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVGS---TKPPPTVKWYKGN----REL--------S--K--R--DYSMSYSDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~~---g~p~~~v~W~k~g----~~l--------~--~--~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      ||.+.|+|.-.   ..+.-.|+|+|.+    ..+        .  .  .  .+.+..+.++.+|.|.+++.+|.|.|+|.
T Consensus        26 GEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~  105 (221)
T PHA03376         26 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCR  105 (221)
T ss_pred             CCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCceEEEE
Confidence            78999999863   2244579999942    111        0  1  1  12233446888999999999999999999


Q ss_pred             EEeCCc
Q psy12422         60 ATNKHG   65 (356)
Q Consensus        60 a~n~~g   65 (356)
                      ......
T Consensus       106 fQkge~  111 (221)
T PHA03376        106 MKLGET  111 (221)
T ss_pred             EEcCCC
Confidence            987543

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.07  E-value=1.6e-09  Score=71.72  Aligned_cols=66  Identities=18%  Similarity=0.377  Sum_probs=48.3

Q ss_pred             EEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEE-eCC----EEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        207 LDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKY-KNG----VASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       207 ~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      ++|.|.+.| +|.+.++|+++|..+.......... +++    .+.|.|.....+|.|.|+|.|.|......
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~   73 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG   73 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence            689999976 7888999999999886432211111 111    25788888888899999999999875433

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.05  E-value=2e-09  Score=75.17  Aligned_cols=77  Identities=23%  Similarity=0.307  Sum_probs=56.5

Q ss_pred             CCceEEEEEeccCC------CCeeEEeeCC-----E-Ecc--cC-------Ce--eEE---ecCCeEEEEEeeCCCCCCe
Q psy12422          1 MQNVIKVKVGSTKP------PPTVKWYKGN-----R-ELS--KR-------DY--SMS---YSDGVVSMEIIDCKPEDSG   54 (356)
Q Consensus         1 g~~v~l~C~~~g~p------~~~v~W~k~g-----~-~l~--~~-------~~--~~~---~~~~~~~L~i~~~~~~D~G   54 (356)
                      |++|+|.|.....|      .+.|.|+|..     . .+.  ..       ++  ...   ...+..+|+|.+++.+|+|
T Consensus         2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G   81 (106)
T cd05714           2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG   81 (106)
T ss_pred             CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence            89999999986553      4689999962     1 110  11       11  111   1345679999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEEec
Q psy12422         55 EYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus        55 ~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      .|.|.+.+..+.....+.|.|.+
T Consensus        82 ~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          82 RYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEcCCCceEEEEEEEEEE
Confidence            99999999888888888888864

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.05  E-value=3.3e-09  Score=71.18  Aligned_cols=72  Identities=18%  Similarity=0.264  Sum_probs=54.7

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc--------cCCCceeEEE-eCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL--------NSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~--------~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .++++.+|++++|.|.+.+.....+.|++-+..+        ....++.... ++...+|.|.+++.+|.|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            4678999999999999988777778887744222        2344554443 455678999999999999999999764


Q ss_pred             C
Q psy12422        268 L  268 (356)
Q Consensus       268 ~  268 (356)
                      .
T Consensus        85 p   85 (95)
T cd05881          85 P   85 (95)
T ss_pred             c
Confidence            3

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=99.04  E-value=1.7e-09  Score=75.58  Aligned_cols=77  Identities=22%  Similarity=0.227  Sum_probs=55.6

Q ss_pred             CCceEEEEEeccCC------CCeeEEeeCCE---E----c-cc-----------CCeeEE-ecCCeEEEEEeeCCCCCCe
Q psy12422          1 MQNVIKVKVGSTKP------PPTVKWYKGNR---E----L-SK-----------RDYSMS-YSDGVVSMEIIDCKPEDSG   54 (356)
Q Consensus         1 g~~v~l~C~~~g~p------~~~v~W~k~g~---~----l-~~-----------~~~~~~-~~~~~~~L~i~~~~~~D~G   54 (356)
                      |++|+|.|.....|      ...|.|||...   +    + ..           .+.... ...+..+|+|.+++.+|+|
T Consensus         2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG   81 (106)
T cd05877           2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDYG   81 (106)
T ss_pred             CCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHCE
Confidence            89999999986553      35699999531   1    1 00           111111 1134568999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEEec
Q psy12422         55 EYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus        55 ~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      .|.|.+.+..+.....+.|.|.+
T Consensus        82 ~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          82 RYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEecccceEEEEEEEEEE
Confidence            99999999988888888888864

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=99.04  E-value=2.5e-09  Score=74.36  Aligned_cols=77  Identities=19%  Similarity=0.280  Sum_probs=54.4

Q ss_pred             CCceEEEEEeccCC------------CCeeEEeeC--CEE---cc--------c----CCeeEEe---cCCeEEEEEeeC
Q psy12422          1 MQNVIKVKVGSTKP------------PPTVKWYKG--NRE---LS--------K----RDYSMSY---SDGVVSMEIIDC   48 (356)
Q Consensus         1 g~~v~l~C~~~g~p------------~~~v~W~k~--g~~---l~--------~----~~~~~~~---~~~~~~L~i~~~   48 (356)
                      |++|+|.|.....+            .+.|.|+|.  |+.   +.        .    ++.....   ..+..+|+|.++
T Consensus         2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl   81 (112)
T cd05900           2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL   81 (112)
T ss_pred             CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence            89999999985432            358999994  211   10        0    1111111   336679999999


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422         49 KPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus        49 ~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      +.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus        82 ~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          82 RSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             ccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            99999999999998777777777777764

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.04  E-value=3.3e-09  Score=73.24  Aligned_cols=75  Identities=17%  Similarity=0.275  Sum_probs=51.8

Q ss_pred             CCceEEEEEeccCCC---CeeEEeeCC--EEc---------cc-------CCeeEE---ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP---PTVKWYKGN--REL---------SK-------RDYSMS---YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~---~~v~W~k~g--~~l---------~~-------~~~~~~---~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|...+...   ..+.|+|..  ..+         ..       .+....   ...+..+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            899999999853221   257888843  111         10       111111   123567999999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEE
Q psy12422         57 KCVATNKHGTDETNCVVIV   75 (356)
Q Consensus        57 ~C~a~n~~g~~~~~~~l~v   75 (356)
                      .|.+.|..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998777777787776

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.98  E-value=8.2e-10  Score=71.88  Aligned_cols=73  Identities=27%  Similarity=0.502  Sum_probs=48.2

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCC-CCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      |.+...+.......+. ++|.|.+.+.| .+.++|+ +.......  ...........|.|.++..+|.|.|+|.|.|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~--~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS--NSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE--EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee--eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            5555555444443444 99999998888 7789999 11111111  1111222346899999999999999999987

...

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.96  E-value=1.1e-08  Score=66.17  Aligned_cols=74  Identities=20%  Similarity=0.342  Sum_probs=50.2

Q ss_pred             ceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeE-EecC---CeEEEEEeeCCCCCCeEEEEEEEeCCc-eeEEEEEEEEe
Q psy12422          3 NVIKVKVG-STKPPPTVKWYKGNRELSKRDYSM-SYSD---GVVSMEIIDCKPEDSGEYKCVATNKHG-TDETNCVVIVE   76 (356)
Q Consensus         3 ~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~-~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~g-~~~~~~~l~v~   76 (356)
                      .+.|.|.+ .+.|.+.|+|||+|.++....... ....   ...+|.|..-+.+|...|+|+|.|..- .......|.|.
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            47899999 567999999999999997542111 1112   234788876566666799999998642 23445555554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.95  E-value=6.7e-09  Score=73.02  Aligned_cols=64  Identities=23%  Similarity=0.226  Sum_probs=48.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCE---Ec------------ccCCeeEEe--cCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNR---EL------------SKRDYSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~---~l------------~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.+.+.+...+.|||...   +.            ...++....  ..+.++|+|.+++.+|+|.|.|.+.+.
T Consensus        13 G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   92 (109)
T cd04983          13 GENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES   92 (109)
T ss_pred             CCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            7899999999877788999999431   10            112333322  246789999999999999999999875


Q ss_pred             C
Q psy12422         64 H   64 (356)
Q Consensus        64 ~   64 (356)
                      .
T Consensus        93 ~   93 (109)
T cd04983          93 G   93 (109)
T ss_pred             C
Confidence            4

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.95  E-value=2.7e-09  Score=71.94  Aligned_cols=60  Identities=15%  Similarity=0.199  Sum_probs=46.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|+|... .|...+.|||+|.......  .........|.|.+|+.+|+|.|+|.+.+.
T Consensus        16 G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          16 GKPVTLRCQGP-YGAVEYRLYREGSTFAVKK--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCcEEEEEecC-CCCCEEEEEECCCCccccc--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            79999999885 6677899999998654211  112233447999999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.95  E-value=3.9e-09  Score=71.19  Aligned_cols=74  Identities=14%  Similarity=0.156  Sum_probs=55.5

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      |.+...+. ..|.+|++|+|.|... .+...+.|+++|.......   .........|.|.+++.+|+|.|+|...|..
T Consensus         3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~   76 (91)
T cd05751           3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSGV   76 (91)
T ss_pred             CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECCC
Confidence            55555554 3688999999999886 6777899999987644211   1112334689999999999999999999863

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.94  E-value=8.3e-09  Score=70.97  Aligned_cols=75  Identities=17%  Similarity=0.240  Sum_probs=52.1

Q ss_pred             CceEEEEEeccCC---CCeeEEeeCCEE----c-----------cc-CCeeEEecC---CeEEEEEeeCCCCCCeEEEEE
Q psy12422          2 QNVIKVKVGSTKP---PPTVKWYKGNRE----L-----------SK-RDYSMSYSD---GVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         2 ~~v~l~C~~~g~p---~~~v~W~k~g~~----l-----------~~-~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      |+|+|.|.....+   ...|.|+|....    +           .. .+......+   +..+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            6899999986554   347999995421    1           00 011122221   456999999999999999999


Q ss_pred             EEe-CCceeEEEEEEEEe
Q psy12422         60 ATN-KHGTDETNCVVIVE   76 (356)
Q Consensus        60 a~n-~~g~~~~~~~l~v~   76 (356)
                      +.. ..|...+.+.|.|.
T Consensus        81 v~~~~~g~~~~~~~l~V~   98 (98)
T cd05718          81 FATFPQGNRQKVTTLTVL   98 (98)
T ss_pred             EEeCCCCcEEEEEEEEeC
Confidence            875 57788888887763

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.94  E-value=1.2e-08  Score=71.76  Aligned_cols=74  Identities=16%  Similarity=0.247  Sum_probs=54.9

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEE---c-----------cCCCceeEEEe--CCEEEEEEccCCCCCCeE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP---L-----------NSSNILDLKYK--NGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~---~-----------~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~  259 (356)
                      +..+.+.+|++++|.|.+.+.+...+.|++....   .           ....++.....  .+...|.|.+++.+|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~   84 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV   84 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence            4567899999999999998778888999984211   0           01223333322  356899999999999999


Q ss_pred             EEEEEEcCCC
Q psy12422        260 YVCTATNSLG  269 (356)
Q Consensus       260 Y~C~a~n~~g  269 (356)
                      |.|.+.+..+
T Consensus        85 Y~C~~~~~~~   94 (109)
T cd04983          85 YFCALSESGG   94 (109)
T ss_pred             EEEEEecCCC
Confidence            9999997654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.94  E-value=1.4e-08  Score=68.16  Aligned_cols=78  Identities=15%  Similarity=0.223  Sum_probs=57.6

Q ss_pred             eeecCCCeEEEEEEE-c----------CCCCCeEEEEECCEEccCCCc-----eeEEEeCCEEEEEEccCCCCCCeEEEE
Q psy12422        199 KTIDDGQCLDLSAVV-K----------GDPEPRVSWTKNGQPLNSSNI-----LDLKYKNGVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~-~----------g~p~p~i~W~~~g~~~~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      ..+.+|+.+.|.|.. .          ......+.|+|++..+.....     ..+...+.  .|.|.++..+|+|.|+|
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C   87 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTC   87 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEE
Confidence            468899999999986 2          122447999999755554332     12223333  89999999999999999


Q ss_pred             EEEcCCCceEEEEEEe
Q psy12422        263 TATNSLGTAETKCKLT  278 (356)
Q Consensus       263 ~a~n~~g~~~~~~~l~  278 (356)
                      ++.|...-.+.++.|+
T Consensus        88 ~~rN~t~C~~~~i~l~  103 (104)
T cd05896          88 VLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EECCCCcceEEEEEEE
Confidence            9999998777777654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.94  E-value=1.2e-08  Score=71.22  Aligned_cols=77  Identities=25%  Similarity=0.427  Sum_probs=55.4

Q ss_pred             CCceEEEEEeccCC----------CCeeEEeeC--CEEcc-----------cCCe--eEE-----ecCCeEEEEEeeCCC
Q psy12422          1 MQNVIKVKVGSTKP----------PPTVKWYKG--NRELS-----------KRDY--SMS-----YSDGVVSMEIIDCKP   50 (356)
Q Consensus         1 g~~v~l~C~~~g~p----------~~~v~W~k~--g~~l~-----------~~~~--~~~-----~~~~~~~L~i~~~~~   50 (356)
                      |++|+|.|.....+          ...|.|||.  ++...           ...+  +..     ...+..+|+|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            89999999996543          256999994  22110           1111  111     124667899999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422         51 EDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus        51 ~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      +|+|.|.|.+.......+..+.|.|.+
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            999999999998777778888888864

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.90  E-value=1.6e-08  Score=69.47  Aligned_cols=72  Identities=18%  Similarity=0.323  Sum_probs=48.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCE-----Ecc----c----------CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNR-----ELS----K----------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~-----~l~----~----------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|.|.|.....+...++|||...     .+.    .          +.+.....++  +|.|.+++.+|+|.|+|.+.
T Consensus        13 G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng--SL~I~~v~~~D~G~Y~~~v~   90 (105)
T cd05774          13 GENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG--SLLIQNVTQKDTGFYTLQTI   90 (105)
T ss_pred             CCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC--cEEEecCCcccCEEEEEEEE
Confidence            7899999965433334899999522     110    0          1122233344  89999999999999999999


Q ss_pred             eCC-ceeEEEEEEE
Q psy12422         62 NKH-GTDETNCVVI   74 (356)
Q Consensus        62 n~~-g~~~~~~~l~   74 (356)
                      +.. ...+..+.|.
T Consensus        91 ~~~~~~~~~~v~l~  104 (105)
T cd05774          91 TTNFQVEQATVHLQ  104 (105)
T ss_pred             eCCccEEEEEEEEE
Confidence            876 4445555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.88  E-value=3.1e-08  Score=69.15  Aligned_cols=39  Identities=33%  Similarity=0.544  Sum_probs=35.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                      ....|+|.+++.+|+|.|.|.+.+..+..+..+.|+|.+
T Consensus        66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence            668999999999999999999999888888899999875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.88  E-value=9.4e-09  Score=70.15  Aligned_cols=75  Identities=17%  Similarity=0.248  Sum_probs=52.6

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeCCEEcc--c------------CCe--eEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKGNRELS--K------------RDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~g~~l~--~------------~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.... .....+.|+|....+.  .            .++  +.....+..+|+|.+++.+|+|.|.|.+.+.
T Consensus         4 G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~   83 (97)
T cd05775           4 GGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINTK   83 (97)
T ss_pred             CCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEcC
Confidence            899999998854 4456799999643221  0            111  1223345579999999999999999999887


Q ss_pred             Ccee-EEEEEEEE
Q psy12422         64 HGTD-ETNCVVIV   75 (356)
Q Consensus        64 ~g~~-~~~~~l~v   75 (356)
                      .|.. ...+.|.|
T Consensus        84 ~~~~~~~~f~L~v   96 (97)
T cd05775          84 NGVTITKEFTLHI   96 (97)
T ss_pred             CCCeEEEEEEEEe
Confidence            6655 45566665

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.88  E-value=6.4e-09  Score=68.04  Aligned_cols=64  Identities=25%  Similarity=0.432  Sum_probs=52.1

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+++.+|+++.|.|...+. .+.+.|+++|..+..+.++.....    -|.|.+++.+|+|.|.|.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEe
Confidence            45688999999999999864 779999999999876554433322    37899999999999999986

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.87  E-value=1.4e-08  Score=68.96  Aligned_cols=73  Identities=18%  Similarity=0.213  Sum_probs=49.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc---------------CC--eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK---------------RD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~---------------~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.....+...|.|+|+......               ..  .+..... ..+|+|.+++.+|+|.|+|.+...
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-NGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-CceEEEccCCchhcEEEEEEEEcC
Confidence            89999999987666678999996533210               00  0111111 258999999999999999999887


Q ss_pred             Ccee-EEEEEEE
Q psy12422         64 HGTD-ETNCVVI   74 (356)
Q Consensus        64 ~g~~-~~~~~l~   74 (356)
                      .+.. ...+.|.
T Consensus        80 ~~~~~~~~~~l~   91 (92)
T cd05741          80 NGVTENAKFFLR   91 (92)
T ss_pred             CCcEEEEEEEEE
Confidence            5433 3344443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.87  E-value=8.2e-09  Score=72.54  Aligned_cols=63  Identities=25%  Similarity=0.359  Sum_probs=46.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--EEcc-----------------cCCeeEEec-CCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--RELS-----------------KRDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~~l~-----------------~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|.+.+ +.+.+.|||..  +...                 ..++..... ...++|+|.+++.+|+|.|.|.+
T Consensus        13 G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~   91 (110)
T cd05899          13 GQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCAS   91 (110)
T ss_pred             CCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEEEEe
Confidence            789999999977 67889999953  1110                 122323222 25679999999999999999999


Q ss_pred             EeCC
Q psy12422         61 TNKH   64 (356)
Q Consensus        61 ~n~~   64 (356)
                      .+..
T Consensus        92 ~~~~   95 (110)
T cd05899          92 SLGG   95 (110)
T ss_pred             eCCC
Confidence            7653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.83  E-value=1.4e-08  Score=70.89  Aligned_cols=65  Identities=23%  Similarity=0.326  Sum_probs=47.7

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeCCE-----Ec-------------ccCCeeEEecC--CeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKGNR-----EL-------------SKRDYSMSYSD--GVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~g~-----~l-------------~~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      |++|+|.|.+.+. +...+.|||...     .+             ...++......  +.++|+|.+++.+|+|.|.|.
T Consensus         6 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   85 (105)
T cd00099           6 GESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCA   85 (105)
T ss_pred             CCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEE
Confidence            7999999999776 677899999432     11             01122222222  678999999999999999999


Q ss_pred             EEeCCc
Q psy12422         60 ATNKHG   65 (356)
Q Consensus        60 a~n~~g   65 (356)
                      +.+..+
T Consensus        86 v~~~~~   91 (105)
T cd00099          86 VSLSGG   91 (105)
T ss_pred             EecCCC
Confidence            988765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.82  E-value=5.7e-08  Score=64.01  Aligned_cols=64  Identities=20%  Similarity=0.339  Sum_probs=42.7

Q ss_pred             ceEEEEEec-cCCCCeeEEeeCCEEcccCCeeEE-ecCCe----EEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          3 NVIKVKVGS-TKPPPTVKWYKGNRELSKRDYSMS-YSDGV----VSMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         3 ~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~-~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      .+.|.|.+. ++|.+.|+|||+|+++........ ..++.    ..|.+.....+|.+.|+|.|.|....
T Consensus         1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             CEEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            478999994 569999999999999864321122 22322    24555443445567999999987544

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.81  E-value=3.4e-08  Score=69.42  Aligned_cols=73  Identities=21%  Similarity=0.322  Sum_probs=52.3

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEECCE--Ecc----------------CCCceeEEEeC-CEEEEEEccCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ--PLN----------------SSNILDLKYKN-GVASLQIQEVFPED  256 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~--~~~----------------~~~~~~~~~~~-~~~~L~i~~v~~~d  256 (356)
                      +....+.+|++++|.|.+.+ +.+.+.|+|...  .+.                ...++...... ...+|.|.+++.+|
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D   83 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED   83 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence            45668999999999999987 777899998321  111                01222222222 45789999999999


Q ss_pred             CeEEEEEEEcCCC
Q psy12422        257 EGVYVCTATNSLG  269 (356)
Q Consensus       257 ~G~Y~C~a~n~~g  269 (356)
                      +|.|.|.+.+..+
T Consensus        84 sg~Y~Ca~~~~~~   96 (110)
T cd05899          84 SAVYLCASSLGGG   96 (110)
T ss_pred             CEEEEEEeeCCCC
Confidence            9999999987543

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.80  E-value=3.5e-08  Score=68.83  Aligned_cols=70  Identities=23%  Similarity=0.415  Sum_probs=51.7

Q ss_pred             eecCCCeEEEEEEEcCC-CCCeEEEEECCEE-----c------------cCCCceeEEEeC--CEEEEEEccCCCCCCeE
Q psy12422        200 TIDDGQCLDLSAVVKGD-PEPRVSWTKNGQP-----L------------NSSNILDLKYKN--GVASLQIQEVFPEDEGV  259 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~-p~p~i~W~~~g~~-----~------------~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~  259 (356)
                      ++.+|++++|.|.+... +...+.|++....     +            ....++......  +..+|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            57889999999999876 6677999983220     0            011233333333  56799999999999999


Q ss_pred             EEEEEEcCCC
Q psy12422        260 YVCTATNSLG  269 (356)
Q Consensus       260 Y~C~a~n~~g  269 (356)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999998776

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.79  E-value=5e-08  Score=68.03  Aligned_cols=73  Identities=18%  Similarity=0.264  Sum_probs=51.5

Q ss_pred             cCCceeecCCCeEEEEEEEcCCC-CCeEEEEECC--EEc---c---------CCCceeEEEeCCEEEEEEccCCCCCCeE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTKNG--QPL---N---------SSNILDLKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~~g--~~~---~---------~~~~~~~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      .|....+.+|++++|.|.+.+.. ...+.|+|..  ...   .         ...++..........|.|.+++.+|+|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~   85 (106)
T cd04980           6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV   85 (106)
T ss_pred             CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence            34556889999999999997765 5679999832  110   0         0112333233455789999999999999


Q ss_pred             EEEEEEcC
Q psy12422        260 YVCTATNS  267 (356)
Q Consensus       260 Y~C~a~n~  267 (356)
                      |.|.+.+.
T Consensus        86 Y~Ca~~~~   93 (106)
T cd04980          86 YYCQQYGT   93 (106)
T ss_pred             EEEEEeCC
Confidence            99998764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.78  E-value=5.1e-08  Score=65.78  Aligned_cols=74  Identities=16%  Similarity=0.142  Sum_probs=51.7

Q ss_pred             ceeecCCCeEEEEEEEc-CCCCCe--EEEEECCEEccCCCceeE--EEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        198 DKTIDDGQCLDLSAVVK-GDPEPR--VSWTKNGQPLNSSNILDL--KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~-g~p~p~--i~W~~~g~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      ...+.+|+.++|.|.+. +.|.+.  |.|++++..+........  .......+|++..-+.+|...|+|+|.+..+..
T Consensus        10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~   88 (100)
T cd05755          10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE   88 (100)
T ss_pred             CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence            34578999999999995 578776  799999999865321110  111224577776555555669999999887653

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.78  E-value=1.2e-07  Score=62.49  Aligned_cols=63  Identities=24%  Similarity=0.336  Sum_probs=44.1

Q ss_pred             eEEEEEecc-CCCCeeEEeeCCEEcccCCeeEE-ecC-Ce----EEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          4 VIKVKVGST-KPPPTVKWYKGNRELSKRDYSMS-YSD-GV----VSMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         4 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~-~~~-~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      +.|+|.+.| +|.+.|+|+|||+++........ ..+ +.    ..|.|.....+|...|+|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            689999955 69999999999999875432222 223 22    24555555566778999999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.77  E-value=7.3e-08  Score=66.79  Aligned_cols=77  Identities=19%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             CCceEEEEEeccCC-------CCeeEEeeC-----CEEc--c-----------cCCeeEEe-----cCCeEEEEEeeCCC
Q psy12422          1 MQNVIKVKVGSTKP-------PPTVKWYKG-----NREL--S-----------KRDYSMSY-----SDGVVSMEIIDCKP   50 (356)
Q Consensus         1 g~~v~l~C~~~g~p-------~~~v~W~k~-----g~~l--~-----------~~~~~~~~-----~~~~~~L~i~~~~~   50 (356)
                      |++|+|.|...-.|       .+.|.|+|.     .+.+  .           ..+.+...     ..+..+|+|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            68999999964322       368999984     1111  0           01111222     13567999999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422         51 EDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus        51 ~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      +|+|.|.|.+.......+..+.|.|.+
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999999777778888888864

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.77  E-value=1.2e-07  Score=66.08  Aligned_cols=39  Identities=31%  Similarity=0.380  Sum_probs=35.6

Q ss_pred             CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                      +..+|.|.+++.+|+|.|.|.+.+..+..+..+.|+|.+
T Consensus        66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence            457899999999999999999999999999999998875

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.76  E-value=1.5e-07  Score=65.33  Aligned_cols=77  Identities=21%  Similarity=0.270  Sum_probs=54.9

Q ss_pred             CCceEEEEEeccCC-----------CCeeEEeeC-----CE-----Ec-----------ccCCeeEEe-----cCCeEEE
Q psy12422          1 MQNVIKVKVGSTKP-----------PPTVKWYKG-----NR-----EL-----------SKRDYSMSY-----SDGVVSM   43 (356)
Q Consensus         1 g~~v~l~C~~~g~p-----------~~~v~W~k~-----g~-----~l-----------~~~~~~~~~-----~~~~~~L   43 (356)
                      |++|+|.|...-.|           ...|.|+|-     |+     .+           ...+.....     ..+..+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            67899999996443           237999983     21     11           001111111     2356799


Q ss_pred             EEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422         44 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus        44 ~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      +|.+++.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999999999988888888888864

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.76  E-value=5e-08  Score=68.43  Aligned_cols=66  Identities=15%  Similarity=0.130  Sum_probs=45.5

Q ss_pred             CCceEEEEEeccC----CCCeeEE---------------eeCCEEccc--CC--eeEE----ecCCeEEEEEeeCCCCCC
Q psy12422          1 MQNVIKVKVGSTK----PPPTVKW---------------YKGNRELSK--RD--YSMS----YSDGVVSMEIIDCKPEDS   53 (356)
Q Consensus         1 g~~v~l~C~~~g~----p~~~v~W---------------~k~g~~l~~--~~--~~~~----~~~~~~~L~i~~~~~~D~   53 (356)
                      |++++|.|.....    +...|+|               |++|+....  ..  .++.    ...+..+|.|.+++.+|.
T Consensus        13 G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~   92 (116)
T cd05879          13 GSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTDN   92 (116)
T ss_pred             CCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCcccC
Confidence            8999999999553    3458999               334444321  11  1111    123556999999999999


Q ss_pred             eEEEEEEEeCCce
Q psy12422         54 GEYKCVATNKHGT   66 (356)
Q Consensus        54 G~Y~C~a~n~~g~   66 (356)
                      |.|+|.+.|..+.
T Consensus        93 G~Y~C~v~n~p~~  105 (116)
T cd05879          93 GTFTCDVKNPPDI  105 (116)
T ss_pred             EEEEEEEEcCCCc
Confidence            9999999987543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.75  E-value=3.8e-08  Score=68.65  Aligned_cols=63  Identities=21%  Similarity=0.289  Sum_probs=45.6

Q ss_pred             CCceEEEEEeccCC-CCeeEEeeCC--EE---cc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKP-PPTVKWYKGN--RE---LS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p-~~~v~W~k~g--~~---l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.+.+.. ...+.|||..  +.   +.          ..++.....+..+.|+|.+++.+|+|.|.|.+.+.
T Consensus        15 G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          15 GESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            79999999997665 5679999842  11   11          11233334446678999999999999999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.74  E-value=5.7e-08  Score=66.42  Aligned_cols=75  Identities=23%  Similarity=0.276  Sum_probs=50.9

Q ss_pred             CCceEEEEEeccCCC-CeeEEeeCCE----Ecc---c-------CC----eeE-EecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPP-PTVKWYKGNR----ELS---K-------RD----YSM-SYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-~~v~W~k~g~----~l~---~-------~~----~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|....... -.|.|+|...    .+.   .       ..    ... ....+..+|+|.+++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            899999998754433 3699998421    110   0       01    111 11224568999999999999999998


Q ss_pred             Ee-CCceeEEEEEEEE
Q psy12422         61 TN-KHGTDETNCVVIV   75 (356)
Q Consensus        61 ~n-~~g~~~~~~~l~v   75 (356)
                      .. ..|.....+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            64 5777777787776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.74  E-value=8e-08  Score=62.14  Aligned_cols=64  Identities=13%  Similarity=0.305  Sum_probs=46.6

Q ss_pred             eEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeC---CEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        206 CLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKN---GVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       206 ~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      .+.|.|.+ .+.|.+.|+|++++.++............   ..++|.|..-..+|...|+|+|.|..-
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence            36899999 45788899999999999765321111111   236788877777778899999999764

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.74  E-value=5.3e-08  Score=69.19  Aligned_cols=62  Identities=19%  Similarity=0.316  Sum_probs=46.0

Q ss_pred             CCceEEEEEecc--CCCCeeEEeeC--CEEc------------------ccCCeeEEecC--CeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGST--KPPPTVKWYKG--NREL------------------SKRDYSMSYSD--GVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g--~p~~~v~W~k~--g~~l------------------~~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.+  .+.+.+.|||.  |...                  ...++.+....  ..+.|+|.+++.+|+|.|
T Consensus        13 G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   92 (116)
T cd04982          13 SKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATY   92 (116)
T ss_pred             CCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEEE
Confidence            799999999976  67788999994  2211                  01233333333  568999999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|.+..
T Consensus        93 ~C~~~~   98 (116)
T cd04982          93 YCAYWE   98 (116)
T ss_pred             EEEEec
Confidence            999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.74  E-value=1.9e-08  Score=65.38  Aligned_cols=57  Identities=26%  Similarity=0.527  Sum_probs=40.5

Q ss_pred             eEEEEEeccCC-CCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          4 VIKVKVGSTKP-PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         4 v~l~C~~~g~p-~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      +.|.|.+.+.| .+.++|+ +...... ............|.|.++..+|.|.|+|.|.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~-~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY-DSNPSFN-SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE-TEEEEEE-EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE-ecCCcee-eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            89999998877 7899999 1111111 11112223344899999999999999999987

...

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.73  E-value=4.4e-08  Score=66.95  Aligned_cols=65  Identities=25%  Similarity=0.381  Sum_probs=46.9

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccCCe---eEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDY---SMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~---~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |+.+.|.|.+.|. |. +.|+|++||..+.....   .....++.+    .|.|......|.|.|+|+|.+...
T Consensus        13 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          13 GGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             CCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            5789999999887 64 68999999999875432   222344433    455555555699999999998754

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.73  E-value=1.1e-07  Score=67.52  Aligned_cols=72  Identities=24%  Similarity=0.412  Sum_probs=52.8

Q ss_pred             CCceeecCCCeEEEEEEEcC--CCCCeEEEEEC--CEEcc-----------------CCCceeEEEeC--CEEEEEEccC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKG--DPEPRVSWTKN--GQPLN-----------------SSNILDLKYKN--GVASLQIQEV  252 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g--~p~p~i~W~~~--g~~~~-----------------~~~~~~~~~~~--~~~~L~i~~v  252 (356)
                      +..+.+.+|++++|.|.+.+  .+.+.+.|++.  |....                 ...++....+.  ....|+|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            34567889999999999977  67788999983  21110                 12334444444  5689999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy12422        253 FPEDEGVYVCTATNS  267 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~  267 (356)
                      +.+|+|.|.|.+...
T Consensus        85 ~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          85 EKEDSATYYCAYWES   99 (116)
T ss_pred             CHHHCEEEEEEEecC
Confidence            999999999988653

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.72  E-value=1.8e-07  Score=64.51  Aligned_cols=75  Identities=21%  Similarity=0.322  Sum_probs=50.3

Q ss_pred             CCeEEEEEEEcCCC---CCeEEEEECCE--Ec---------cC------CCceeEEE---eCCEEEEEEccCCCCCCeEE
Q psy12422        204 GQCLDLSAVVKGDP---EPRVSWTKNGQ--PL---------NS------SNILDLKY---KNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       204 g~~~~l~C~~~g~p---~p~i~W~~~g~--~~---------~~------~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      |++++|.|......   ...+.|++...  .+         ..      ..+..+..   ..+..+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            78899999985322   23588887431  11         00      01222211   13457899999999999999


Q ss_pred             EEEEEcCCCceEEEEEEe
Q psy12422        261 VCTATNSLGTAETKCKLT  278 (356)
Q Consensus       261 ~C~a~n~~g~~~~~~~l~  278 (356)
                      .|.+.|..+..+..+.|.
T Consensus        81 ~C~v~~~~~~~~~~i~l~   98 (100)
T cd05713          81 TCFFQSDGFYEEATVELK   98 (100)
T ss_pred             EEEEecCCcEEEEEEEEE
Confidence            999999888777777664

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.72  E-value=9.5e-08  Score=65.65  Aligned_cols=76  Identities=18%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC--------C-----------CceeEEEeCCEEEEEEccCCCCCCeE
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS--------S-----------NILDLKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~--------~-----------~~~~~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      ..+.+|+++.|.|.....+...+.|+|+......        .           .+..+   ..+++|.|++++.+|+|.
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~---~~ngSL~I~~v~~~D~G~   84 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETI---YPNGSLLIQNVTQKDTGF   84 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEE---eCCCcEEEecCCcccCEE
Confidence            3578899999998664333447999995321110        0           01111   112489999999999999


Q ss_pred             EEEEEEcCC-CceEEEEEE
Q psy12422        260 YVCTATNSL-GTAETKCKL  277 (356)
Q Consensus       260 Y~C~a~n~~-g~~~~~~~l  277 (356)
                      |+|.+.+.. ...+..+.+
T Consensus        85 Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          85 YTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEEEEeCCccEEEEEEEE
Confidence            999999987 455555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.71  E-value=8.1e-08  Score=65.90  Aligned_cols=63  Identities=24%  Similarity=0.347  Sum_probs=45.9

Q ss_pred             CCceEEEEEeccC--CCCeeEEeeCC---EEc--c----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTK--PPPTVKWYKGN---REL--S----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~--p~~~v~W~k~g---~~l--~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|...+.  ....+.|||..   .+.  .          ..++......+.+.|+|.+++.+|+|.|.|.+.+.
T Consensus         6 G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984           6 GETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             CCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence            8999999998664  45679999932   111  0          12344444556778999999999999999998653

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.68  E-value=3e-07  Score=59.24  Aligned_cols=71  Identities=17%  Similarity=0.309  Sum_probs=50.1

Q ss_pred             CCceEEEEEecc--CCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGST--KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      ||+++|+|....  .|.+.|+|+.-+...-     .....+..+|.+.++...|+|.++|.+.-..-.....+.+.|.
T Consensus        14 G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl   86 (88)
T cd07694          14 GTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL   86 (88)
T ss_pred             CCcEEEEEecCCCCCCCccEEEeCCCCccc-----eeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence            899999999954  4455999997544321     1112233489999999999999999997665555555666554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.67  E-value=3.2e-07  Score=62.97  Aligned_cols=74  Identities=19%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             CceEEEEEeccCC---CCeeEEeeC--CE---Ec---c-c------CCe--eEEe----cCCeEEEEEeeCCCCCCeEEE
Q psy12422          2 QNVIKVKVGSTKP---PPTVKWYKG--NR---EL---S-K------RDY--SMSY----SDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         2 ~~v~l~C~~~g~p---~~~v~W~k~--g~---~l---~-~------~~~--~~~~----~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      .+|+|.|.....+   ...|.|+|.  +.   .+   . .      ..+  +..+    ..+..+|+|.+++.+|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~   80 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK   80 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence            3789999985443   337999993  21   11   1 0      000  1112    224568999999999999999


Q ss_pred             EEEEe-CCceeEEEEEEEE
Q psy12422         58 CVATN-KHGTDETNCVVIV   75 (356)
Q Consensus        58 C~a~n-~~g~~~~~~~l~v   75 (356)
                      |.+.+ ..|..++.+.|.|
T Consensus        81 C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEeCCCCCeeeEEEEEe
Confidence            99988 5777777777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.67  E-value=1.3e-07  Score=63.85  Aligned_cols=65  Identities=20%  Similarity=0.257  Sum_probs=45.4

Q ss_pred             CCceEEEEEe-ccCCCCe--eEEeeCCEEcccCCeeE---EecCCeEEEEEeeCCCCCCe-EEEEEEEeCCce
Q psy12422          1 MQNVIKVKVG-STKPPPT--VKWYKGNRELSKRDYSM---SYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~--v~W~k~g~~l~~~~~~~---~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~g~   66 (356)
                      |+.++|+|.+ .+.|.+.  |+|||+++.+....+..   .......+|++.. .++|.| .|+|+|.+..+.
T Consensus        16 G~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~-~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          16 GKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITV-DREDHGANFSCETELDLRP   87 (100)
T ss_pred             CCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEec-chhhCCcEEEEEEEeccCc
Confidence            7899999999 5578886  79999999996533211   1122334677764 555655 999999887544

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.65  E-value=1.1e-07  Score=65.04  Aligned_cols=69  Identities=23%  Similarity=0.322  Sum_probs=50.2

Q ss_pred             cCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCc-eeEE-EeCC----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        202 DDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNI-LDLK-YKNG----VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~-~~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ..|+.+.|.|.+.|+ |. +.|+|++||..+..... .... ..++    .+.|.+.....+|.|.|+|+|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468899999999987 53 57999999999876543 1111 1111    245677777667999999999998764

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.65  E-value=2.8e-07  Score=60.58  Aligned_cols=62  Identities=15%  Similarity=0.303  Sum_probs=42.9

Q ss_pred             eEEEEEecc-CCCCeeEEeeCCEEcccCCeeEE--ecCCe----EEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          4 VIKVKVGST-KPPPTVKWYKGNRELSKRDYSMS--YSDGV----VSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         4 v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~--~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      +.|+|.+.| +|.+.|+|+|||+.+........  ..++.    ..|.|..-...|...|+|++.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            689999955 78889999999999865432221  22222    3566665445667799999988643

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.65  E-value=1.7e-07  Score=66.08  Aligned_cols=65  Identities=20%  Similarity=0.271  Sum_probs=43.2

Q ss_pred             CCceEEEEEeccCC----CCeeEEeeC----CEE--cc----------cCCe--eEE----ecCCeEEEEEeeCCCCCCe
Q psy12422          1 MQNVIKVKVGSTKP----PPTVKWYKG----NRE--LS----------KRDY--SMS----YSDGVVSMEIIDCKPEDSG   54 (356)
Q Consensus         1 g~~v~l~C~~~g~p----~~~v~W~k~----g~~--l~----------~~~~--~~~----~~~~~~~L~i~~~~~~D~G   54 (356)
                      |++++|.|.....+    ...|.||+.    +.+  +-          ..++  +..    ...+..+|+|.+++.+|+|
T Consensus        13 G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G   92 (115)
T cd05880          13 GTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPTDNG   92 (115)
T ss_pred             CCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChhhCE
Confidence            79999999985433    235999851    221  10          0111  111    1234568999999999999


Q ss_pred             EEEEEEEeCCc
Q psy12422         55 EYKCVATNKHG   65 (356)
Q Consensus        55 ~Y~C~a~n~~g   65 (356)
                      .|.|.+.|..+
T Consensus        93 ~Y~C~v~~~~~  103 (115)
T cd05880          93 TYTCQVKNPPD  103 (115)
T ss_pred             EEEEEEEeCCC
Confidence            99999998654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.65  E-value=3.4e-07  Score=64.23  Aligned_cols=74  Identities=18%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             CceeecCCCeEEEEEEEcCC----CCCeEEEEE---------------CCEEccC-C----CceeEEE--eCCEEEEEEc
Q psy12422        197 TDKTIDDGQCLDLSAVVKGD----PEPRVSWTK---------------NGQPLNS-S----NILDLKY--KNGVASLQIQ  250 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~----p~p~i~W~~---------------~g~~~~~-~----~~~~~~~--~~~~~~L~i~  250 (356)
                      ..+.+..|+++.|.|.....    +...|.|++               +|..... .    .++.+..  ..+..+|.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            34578899999999999653    345799933               3333221 0    1232221  2345789999


Q ss_pred             cCCCCCCeEEEEEEEcCCCc
Q psy12422        251 EVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       251 ~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      +++.+|.|+|+|.+.|.-+.
T Consensus        86 nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             cCCcccCEEEEEEEEcCCCc
Confidence            99999999999999998764

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.64  E-value=2.5e-07  Score=63.46  Aligned_cols=68  Identities=21%  Similarity=0.348  Sum_probs=48.9

Q ss_pred             eecCCCeEEEEEEEcCC--CCCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEE
Q psy12422        200 TIDDGQCLDLSAVVKGD--PEPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~--p~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      .+.+|++++|.|.+.+.  ....+.|++.  |....            ...++..........|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            47889999999999765  4567999982  21111            01234444445667899999999999999998


Q ss_pred             EEcC
Q psy12422        264 ATNS  267 (356)
Q Consensus       264 a~n~  267 (356)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8754

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.64  E-value=2.2e-07  Score=61.20  Aligned_cols=66  Identities=17%  Similarity=0.329  Sum_probs=45.1

Q ss_pred             eEEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        206 CLDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       206 ~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      .+.|.|.+.+ +|.+.|.|+++|..+...........++    .+.|.+.....++.+.|+|+|.|.....
T Consensus         1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             CEEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            3689999954 6889999999999886433111111121    2356665556667789999999987653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.63  E-value=4.9e-07  Score=62.10  Aligned_cols=74  Identities=20%  Similarity=0.304  Sum_probs=49.4

Q ss_pred             CeEEEEEEEcCCC---CCeEEEEECCEE----c-----------cC--CCceeEEEe-CCEEEEEEccCCCCCCeEEEEE
Q psy12422        205 QCLDLSAVVKGDP---EPRVSWTKNGQP----L-----------NS--SNILDLKYK-NGVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       205 ~~~~l~C~~~g~p---~p~i~W~~~g~~----~-----------~~--~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      ++++|.|.....+   ...|.|+|....    +           ..  ..+..+... .+..+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999997654   346999994321    0           00  011111111 1457899999999999999999


Q ss_pred             EEc-CCCceEEEEEEe
Q psy12422        264 ATN-SLGTAETKCKLT  278 (356)
Q Consensus       264 a~n-~~g~~~~~~~l~  278 (356)
                      +.+ ..|.......|.
T Consensus        81 v~~~~~g~~~~~~~l~   96 (98)
T cd05718          81 FATFPQGNRQKVTTLT   96 (98)
T ss_pred             EEeCCCCcEEEEEEEE
Confidence            875 667777777664

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.63  E-value=4.1e-07  Score=63.32  Aligned_cols=76  Identities=20%  Similarity=0.354  Sum_probs=51.9

Q ss_pred             CCCeEEEEEEEcCCC------------CCeEEEEEC--CEE---cc-CC----------CceeEEE---eCCEEEEEEcc
Q psy12422        203 DGQCLDLSAVVKGDP------------EPRVSWTKN--GQP---LN-SS----------NILDLKY---KNGVASLQIQE  251 (356)
Q Consensus       203 ~g~~~~l~C~~~g~p------------~p~i~W~~~--g~~---~~-~~----------~~~~~~~---~~~~~~L~i~~  251 (356)
                      .|++++|.|......            .+.|.|+|-  |..   +. ..          +++.+..   ..+..+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999985432            357999983  211   10 00          1222221   23567999999


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        252 VFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       252 v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ++.+|+|.|.|.+.+........+.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~  107 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQ  107 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEE
Confidence            999999999999998877776666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.61  E-value=2.4e-07  Score=62.76  Aligned_cols=75  Identities=17%  Similarity=0.230  Sum_probs=50.1

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      |.+...+ ...+.+|++++|.|.... +...+.|+|+|...................|.|.+++.+|+|.|.|....
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            3444433 335889999999998864 55679999988653321000000112245799999999999999998754

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.59  E-value=4.9e-07  Score=63.76  Aligned_cols=74  Identities=18%  Similarity=0.315  Sum_probs=49.1

Q ss_pred             CceeecCCCeEEEEEEEcCCC----CCeEEEEEC----CEE--cc---------CC----CceeEE--EeCCEEEEEEcc
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP----EPRVSWTKN----GQP--LN---------SS----NILDLK--YKNGVASLQIQE  251 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p----~p~i~W~~~----g~~--~~---------~~----~~~~~~--~~~~~~~L~i~~  251 (356)
                      ..+.+.+|++++|.|.....+    ...|.|++.    +..  +.         ..    .++.+.  ...+..+|+|.+
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~   85 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ   85 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence            456889999999999985433    235999751    211  10         01    111111  112356899999


Q ss_pred             CCCCCCeEEEEEEEcCCCc
Q psy12422        252 VFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       252 v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ++.+|+|.|.|.+.|..+.
T Consensus        86 v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          86 LQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             CChhhCEEEEEEEEeCCCC
Confidence            9999999999999987764

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.58  E-value=6.5e-07  Score=58.95  Aligned_cols=64  Identities=22%  Similarity=0.354  Sum_probs=45.0

Q ss_pred             EEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeCC-----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        207 LDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKNG-----VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       207 ~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ++|.|.+.| +|.+.|+|+++|..+............+     .+.|.+.....+|...|+|+|.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            589999965 6999999999999887543212222121     145666566667788999999998753

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.57  E-value=3.8e-07  Score=61.83  Aligned_cols=66  Identities=21%  Similarity=0.282  Sum_probs=46.7

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEccCC--------C------ce--eEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSS--------N------IL--DLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~--------~------~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      |++|+|.|.....+...|.|+++.......        .      .+  ...... ...|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-NGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-CceEEEccCCchhcEEEEEEEEcC
Confidence            789999999876666789999965332110        0      00  011112 268999999999999999999988


Q ss_pred             CCc
Q psy12422        268 LGT  270 (356)
Q Consensus       268 ~g~  270 (356)
                      .+.
T Consensus        80 ~~~   82 (92)
T cd05741          80 NGV   82 (92)
T ss_pred             CCc
Confidence            754

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.55  E-value=5.7e-07  Score=63.75  Aligned_cols=65  Identities=18%  Similarity=0.185  Sum_probs=42.6

Q ss_pred             CCceEEEEEeccCC----CCeeEEeeCCE------Ecc-----------cCCee--EE----ecCCeEEEEEeeCCCCCC
Q psy12422          1 MQNVIKVKVGSTKP----PPTVKWYKGNR------ELS-----------KRDYS--MS----YSDGVVSMEIIDCKPEDS   53 (356)
Q Consensus         1 g~~v~l~C~~~g~p----~~~v~W~k~g~------~l~-----------~~~~~--~~----~~~~~~~L~i~~~~~~D~   53 (356)
                      |++|+|.|......    ...+.|++...      .+-           ..++.  +.    ...+.++|+|.+++.+|+
T Consensus        13 G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~   92 (116)
T cd05715          13 GSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFTDN   92 (116)
T ss_pred             CCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCcccC
Confidence            78999999985432    24699987311      110           01111  11    122457899999999999


Q ss_pred             eEEEEEEEeCCc
Q psy12422         54 GEYKCVATNKHG   65 (356)
Q Consensus        54 G~Y~C~a~n~~g   65 (356)
                      |.|.|.+.|...
T Consensus        93 G~Y~C~v~~~~~  104 (116)
T cd05715          93 GTYTCDVKNPPD  104 (116)
T ss_pred             EEEEEEEEeCCC
Confidence            999999998643

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.55  E-value=6.6e-07  Score=58.78  Aligned_cols=64  Identities=17%  Similarity=0.331  Sum_probs=45.1

Q ss_pred             EEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeC-----CEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        207 LDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKN-----GVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       207 ~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ++|.|.+.| +|.+.|+|++||..+............     ..+.|.+..-..++...|+|+|.|..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999965 788889999999998654322222211     1246777666667788999999987654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.55  E-value=2.6e-07  Score=62.58  Aligned_cols=60  Identities=17%  Similarity=0.160  Sum_probs=42.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCe-eEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|.... +.-.+.|||+|........ ..........+.|.+++.+|+|.|.|...
T Consensus        15 G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          15 GENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            899999998754 4567999999876432110 01112234478999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.55  E-value=5e-07  Score=61.64  Aligned_cols=75  Identities=19%  Similarity=0.253  Sum_probs=51.0

Q ss_pred             CCCeEEEEEEEcC-CCCCeEEEEECCEEccCC-------------Cce--eEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        203 DGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSS-------------NIL--DLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       203 ~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~-------------~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      .|++|+|.|.... .....+.|++....+...             ..+  ......+..+|.|.+++.+|+|.|.|.+.+
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            6999999998854 445569999864322110             011  122334457899999999999999999998


Q ss_pred             CCCce-EEEEEE
Q psy12422        267 SLGTA-ETKCKL  277 (356)
Q Consensus       267 ~~g~~-~~~~~l  277 (356)
                      ..|.. ...+.|
T Consensus        83 ~~~~~~~~~f~L   94 (97)
T cd05775          83 KNGVTITKEFTL   94 (97)
T ss_pred             CCCCeEEEEEEE
Confidence            87654 334443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.53  E-value=1.5e-06  Score=59.07  Aligned_cols=38  Identities=32%  Similarity=0.552  Sum_probs=34.5

Q ss_pred             CeEEEEEecCCCCCCeEEEEEEEc-CCcceEEEEEEEEE
Q psy12422        293 GVASLQIQEVFPEDEGVYVCTATN-SLGTAETKCKLTVR  330 (356)
Q Consensus       293 ~~~~L~i~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~V~  330 (356)
                      ..++|.|.+++.+|+|.|+|.+.| +.|..++.+.|.|.
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence            557899999999999999999999 78988999999873

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.52  E-value=1e-06  Score=59.86  Aligned_cols=74  Identities=20%  Similarity=0.272  Sum_probs=50.0

Q ss_pred             ceEEEEEeccC-CCC---eeEEeeC--CE--Ecc--c----------CCeeEEe---cCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          3 NVIKVKVGSTK-PPP---TVKWYKG--NR--ELS--K----------RDYSMSY---SDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         3 ~v~l~C~~~g~-p~~---~v~W~k~--g~--~l~--~----------~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      .|+|.|..... |..   .|.|.|.  +.  .+.  .          -+.++..   .-+..+|.|.+++.+|+|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            68999999642 222   5999883  11  110  0          0011111   12345899999999999999999


Q ss_pred             EEe-CCceeEEEEEEEEe
Q psy12422         60 ATN-KHGTDETNCVVIVE   76 (356)
Q Consensus        60 a~n-~~g~~~~~~~l~v~   76 (356)
                      +.+ ..|..++.+.|.|.
T Consensus        82 v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          82 FATFPTGNRESQLNLTVY   99 (99)
T ss_pred             EEeCCCCCeEEEEEEEEC
Confidence            999 68888888888773

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.51  E-value=1.1e-05  Score=56.04  Aligned_cols=39  Identities=31%  Similarity=0.515  Sum_probs=36.0

Q ss_pred             CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                      +..+|.|.+++.+|+|.|.|++.+.....+..+.|+|++
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            568999999999999999999999998899999999875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.50  E-value=1.2e-06  Score=58.89  Aligned_cols=75  Identities=21%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             CceEEEEEeccCC-CCeeEEeeCC----EEcc--c--------CC--eeEEe---cCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          2 QNVIKVKVGSTKP-PPTVKWYKGN----RELS--K--------RD--YSMSY---SDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         2 ~~v~l~C~~~g~p-~~~v~W~k~g----~~l~--~--------~~--~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      ++|+|.|.....+ ...|+|.|..    ..+.  .        ..  .++..   ..+..+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            4799999986433 3479998832    1121  0        01  01111   2234589999999999999999975


Q ss_pred             e-CCceeEEEEEEEEe
Q psy12422         62 N-KHGTDETNCVVIVE   76 (356)
Q Consensus        62 n-~~g~~~~~~~l~v~   76 (356)
                      + ..|..++++.|.|.
T Consensus        81 tfP~G~~~~~~~l~~~   96 (96)
T cd05887          81 TFPLGNTQSSTTVTVL   96 (96)
T ss_pred             eCCCCCeeEEEEEEEC
Confidence            4 68998998888773

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.49  E-value=3.7e-06  Score=62.48  Aligned_cols=101  Identities=18%  Similarity=0.204  Sum_probs=64.7

Q ss_pred             ceeecCCCeEEEEEEEc-CCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      .++|.+|++++|.|... +...+.+.|+|....+              .             .|.+     .|     ..
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~I--------------a-------------tY~~-----~g-----~~   66 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTI--------------A-------------GYGP-----CG-----PV   66 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCE--------------E-------------EEec-----CC-----cE
Confidence            46789999999999984 6667789999843100              0             0111     01     01


Q ss_pred             EecCCCCccceeEEeCCeEEEEEecCCCCCCeEEEEEEEc-CCc-ceEEEEEEEEEecCCC
Q psy12422        277 LTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN-SLG-TAETKCKLTVRSTPAA  335 (356)
Q Consensus       277 l~p~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n-~~g-~~~~~~~l~V~~~p~~  335 (356)
                      +.+....++.-+......+.|+|++|+.+|+|.|.|...- +.| ..+..+.|.|.....+
T Consensus        67 i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~~~  127 (189)
T PHA02987         67 IVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDSYT  127 (189)
T ss_pred             EChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEchhhc
Confidence            1111111111122334668999999999999999998643 556 7788999999987543

>cd00096 Ig Immunoglobulin domain

Probab=98.49  E-value=1.1e-06  Score=56.06  Aligned_cols=61  Identities=36%  Similarity=0.604  Sum_probs=47.0

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCCe-----eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRDY-----SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~~-----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      +.|.|.+.+.|.+.+.|++++........     ..........|.|.+++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            57999998878889999999877654321     11223345689999999999999999998865

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.49  E-value=2.5e-06  Score=59.14  Aligned_cols=39  Identities=23%  Similarity=0.327  Sum_probs=35.5

Q ss_pred             CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                      +..+|.|.+++.+|+|.|.|.+.......+..+.|+|.+
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            678999999999999999999999877888899999875

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.47  E-value=1.9e-06  Score=60.24  Aligned_cols=76  Identities=25%  Similarity=0.426  Sum_probs=51.6

Q ss_pred             CCCeEEEEEEEcCCC----------CCeEEEEEC--CEEcc----CC----------CceeEE---EeCCEEEEEEccCC
Q psy12422        203 DGQCLDLSAVVKGDP----------EPRVSWTKN--GQPLN----SS----------NILDLK---YKNGVASLQIQEVF  253 (356)
Q Consensus       203 ~g~~~~l~C~~~g~p----------~p~i~W~~~--g~~~~----~~----------~~~~~~---~~~~~~~L~i~~v~  253 (356)
                      .|++++|.|.....+          ...|.|+|.  +....    ..          .++.+.   ...+..+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            389999999996544          245999984  21110    00          122221   12345789999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        254 PEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      .+|+|.|.|.+.......+..+.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~  105 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLE  105 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEE
Confidence            9999999999998776666666664

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.47  E-value=8.9e-07  Score=60.75  Aligned_cols=64  Identities=19%  Similarity=0.210  Sum_probs=45.5

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeCCE-----Ec-------c--cCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKGNR-----EL-------S--KRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~g~-----~l-------~--~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.... .+...+.|||...     .+       .  ..++...  ..++.++|+|.+++.+|+|.|.|.+...
T Consensus         7 G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   86 (98)
T cd05716           7 GGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDD   86 (98)
T ss_pred             CCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccC
Confidence            899999999854 3456789999531     11       0  1223332  2356789999999999999999998765


Q ss_pred             C
Q psy12422         64 H   64 (356)
Q Consensus        64 ~   64 (356)
                      .
T Consensus        87 ~   87 (98)
T cd05716          87 G   87 (98)
T ss_pred             C
Confidence            3

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.46  E-value=6.5e-07  Score=62.41  Aligned_cols=62  Identities=21%  Similarity=0.360  Sum_probs=42.7

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeC--C---EEc------c------------cCCeeE--EecCCeEEEEEeeCCCCCCe
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKG--N---REL------S------------KRDYSM--SYSDGVVSMEIIDCKPEDSG   54 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~--g---~~l------~------------~~~~~~--~~~~~~~~L~i~~~~~~D~G   54 (356)
                      |++|+|.|.+.+. ....+.|||.  |   +.+      .            ..++..  ...+..+.|+|.+++.+|+|
T Consensus         6 G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg   85 (107)
T cd07700           6 NNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDSG   85 (107)
T ss_pred             CCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHCE
Confidence            8999999998653 3457999993  2   110      0            112222  22344578999999999999


Q ss_pred             EEEEEEEe
Q psy12422         55 EYKCVATN   62 (356)
Q Consensus        55 ~Y~C~a~n   62 (356)
                      .|.|...+
T Consensus        86 ~YyCa~~~   93 (107)
T cd07700          86 TYFCMTVG   93 (107)
T ss_pred             EEEEeEcC
Confidence            99999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.45  E-value=1.4e-06  Score=61.64  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=50.1

Q ss_pred             CCceEEEEEec-cCCCCeeEEeeCCE-----Ecc---------------cCCeeE--EecCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGS-TKPPPTVKWYKGNR-----ELS---------------KRDYSM--SYSDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~-g~p~~~v~W~k~g~-----~l~---------------~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      |++|.|.|... ......+.|++...     .+.               ..+...  ....+.++|+|.+++.+|+|.|.
T Consensus        16 G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~   95 (114)
T PF07686_consen   16 GESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYF   95 (114)
T ss_dssp             TSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEEE
T ss_pred             CCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEEE
Confidence            78999999998 55566899999321     111               011111  12245679999999999999999


Q ss_pred             EEEEeC-CceeEEEEEEEE
Q psy12422         58 CVATNK-HGTDETNCVVIV   75 (356)
Q Consensus        58 C~a~n~-~g~~~~~~~l~v   75 (356)
                      |.+... .......+.|.|
T Consensus        96 C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   96 CQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             EEEEESSEEEEEEEEEEEE
T ss_pred             EEEEECCCCEECCcEEEEC
Confidence            999886 333334455543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.44  E-value=1.8e-06  Score=64.08  Aligned_cols=78  Identities=17%  Similarity=0.238  Sum_probs=55.5

Q ss_pred             CCceEEEEEec-cCCCCeeEEeeCCEEcc----------c---CCee-EEecCCeEEEEEeeCCCCCCeEEEEEEEe-CC
Q psy12422          1 MQNVIKVKVGS-TKPPPTVKWYKGNRELS----------K---RDYS-MSYSDGVVSMEIIDCKPEDSGEYKCVATN-KH   64 (356)
Q Consensus         1 g~~v~l~C~~~-g~p~~~v~W~k~g~~l~----------~---~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n-~~   64 (356)
                      ||+|.|.|... +...+.++|+|..+.+.          .   ++.. .........|+|.+++.+|+|.|.|...- ..
T Consensus        30 ge~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~  109 (189)
T PHA02987         30 HVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLS  109 (189)
T ss_pred             CCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCC
Confidence            78999999984 65678899999643221          0   1111 11222345899999999999999998754 45


Q ss_pred             c-eeEEEEEEEEecc
Q psy12422         65 G-TDETNCVVIVESE   78 (356)
Q Consensus        65 g-~~~~~~~l~v~~~   78 (356)
                      | ..+..+-|+|...
T Consensus       110 G~~~~gt~CLtVt~~  124 (189)
T PHA02987        110 KNNEKGVVCLNVTTD  124 (189)
T ss_pred             CCCceeEEEEEEEch
Confidence            6 7788888988764

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.41  E-value=1.1e-06  Score=62.45  Aligned_cols=63  Identities=27%  Similarity=0.339  Sum_probs=44.7

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeC--CEE---c-c---------cCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKG--NRE---L-S---------KRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~--g~~---l-~---------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|...+. ....+.|||.  +..   + .         .+++...  ...+.++|+|.+++.+|+|.|.|.+..
T Consensus        14 G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   93 (116)
T cd07706          14 GEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST   93 (116)
T ss_pred             CCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence            8999999998643 4567999993  221   1 0         1233332  234578999999999999999999875


Q ss_pred             C
Q psy12422         63 K   63 (356)
Q Consensus        63 ~   63 (356)
                      .
T Consensus        94 ~   94 (116)
T cd07706          94 L   94 (116)
T ss_pred             C
Confidence            3

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.41  E-value=5.7e-07  Score=66.13  Aligned_cols=60  Identities=23%  Similarity=0.315  Sum_probs=47.0

Q ss_pred             EEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCCCCCCcccCCCCceeEee
Q psy12422        295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFFAIV  355 (356)
Q Consensus       295 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~  355 (356)
                      +.|+|.+++.+|+|.|.|.+.+..|..+..+.|.|..+|.+...+.+.... .+....+.|
T Consensus         1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~-~~~~~~L~C   60 (139)
T cd05771           1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSM-IEEPQTLIC   60 (139)
T ss_pred             CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceee-cCCcEEEEE
Confidence            369999999999999999999999999999999999999886655443222 233345555

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.40  E-value=2.5e-06  Score=60.50  Aligned_cols=72  Identities=17%  Similarity=0.310  Sum_probs=50.8

Q ss_pred             CCceeecCCCeEEEEEEEcCC-CCCeEEEEEC--CEEc------------cCCCceeEEE--eCCEEEEEEccCCCCCCe
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKN--GQPL------------NSSNILDLKY--KNGVASLQIQEVFPEDEG  258 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~~--g~~~------------~~~~~~~~~~--~~~~~~L~i~~v~~~d~G  258 (356)
                      +..+.+.+|++++|.|..... ....+.|++.  +..+            ...+++....  ..+...|+|.+++.+|+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg   85 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA   85 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence            355678999999999998653 4566999982  2111            0123343332  244678999999999999


Q ss_pred             EEEEEEEcC
Q psy12422        259 VYVCTATNS  267 (356)
Q Consensus       259 ~Y~C~a~n~  267 (356)
                      .|.|.+...
T Consensus        86 ~Y~C~~~~~   94 (116)
T cd07706          86 KYFCALSTL   94 (116)
T ss_pred             EEEEEEECC
Confidence            999998854

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.40  E-value=2.4e-06  Score=60.54  Aligned_cols=75  Identities=16%  Similarity=0.274  Sum_probs=49.0

Q ss_pred             CCceeecCCCeEEEEEEEcCCC----CCeEEEEECCE------Ec-c---------CCC----ceeEEE--eCCEEEEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP----EPRVSWTKNGQ------PL-N---------SSN----ILDLKY--KNGVASLQI  249 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p----~p~i~W~~~g~------~~-~---------~~~----~~~~~~--~~~~~~L~i  249 (356)
                      |..+.+.+|++++|.|......    ...+.|++...      .+ .         ...    ++.+..  ..+..+|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            3456788999999999985432    24599986211      10 0         011    111111  123478999


Q ss_pred             ccCCCCCCeEEEEEEEcCCCc
Q psy12422        250 QEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       250 ~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      .+++.+|+|.|.|.+.|.-..
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999987653

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.39  E-value=1.6e-06  Score=58.32  Aligned_cols=68  Identities=22%  Similarity=0.441  Sum_probs=46.0

Q ss_pred             CCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEe-CC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        204 GQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYK-NG----VASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       204 g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~-~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      |+.+.|.|.+ .|+|+|.|+|+.++..+........... .+    .+.|.+..-..++...++|+|.+..-..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            7899999977 7899999999999887722111111111 11    2467776655567789999999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.38  E-value=1.2e-06  Score=60.64  Aligned_cols=62  Identities=18%  Similarity=0.216  Sum_probs=43.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC----EEc---c---c-------------CCeeEEecCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN----REL---S---K-------------RDYSMSYSDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g----~~l---~---~-------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      |++|+|.|...+.-...+.|||..    ...   .   .             .++........+.|+|.+++.+|+|.|.
T Consensus         6 G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsgtY~   85 (104)
T cd05720           6 GQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEGYYF   85 (104)
T ss_pred             CCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCEEEE
Confidence            899999999855444569999942    111   0   0             0122223345678999999999999999


Q ss_pred             EEEEe
Q psy12422         58 CVATN   62 (356)
Q Consensus        58 C~a~n   62 (356)
                      |.+.+
T Consensus        86 Ca~~~   90 (104)
T cd05720          86 CSVAS   90 (104)
T ss_pred             EEEcc
Confidence            98753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.38  E-value=3.3e-06  Score=56.92  Aligned_cols=72  Identities=19%  Similarity=0.199  Sum_probs=46.3

Q ss_pred             CceEEEEEecc-CCCCeeEEeeCCE----Eccc----------CC--eeEEec---CCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          2 QNVIKVKVGST-KPPPTVKWYKGNR----ELSK----------RD--YSMSYS---DGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         2 ~~v~l~C~~~g-~p~~~v~W~k~g~----~l~~----------~~--~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |+++|.|.... .....|+|.|...    .+..          ..  .++...   ....+|+|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            68999999842 2345789998421    1110          11  112211   234589999999999999999997


Q ss_pred             eC-CceeEEEEEE
Q psy12422         62 NK-HGTDETNCVV   73 (356)
Q Consensus        62 n~-~g~~~~~~~l   73 (356)
                      .- .|..++.+.+
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            64 6666665544

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.35  E-value=5e-06  Score=57.05  Aligned_cols=73  Identities=19%  Similarity=0.308  Sum_probs=47.8

Q ss_pred             eEEEEEEEcCCC---CCeEEEEEC--CE---Ec---c-C---------CCceeEEE--eCCEEEEEEccCCCCCCeEEEE
Q psy12422        206 CLDLSAVVKGDP---EPRVSWTKN--GQ---PL---N-S---------SNILDLKY--KNGVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       206 ~~~l~C~~~g~p---~p~i~W~~~--g~---~~---~-~---------~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      +++|.|.....+   ...|.|+|.  +.   .+   . .         .++..+..  ..+..+|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            688999885433   336999982  21   11   0 0         02233322  2235689999999999999999


Q ss_pred             EEEc-CCCceEEEEEEe
Q psy12422        263 TATN-SLGTAETKCKLT  278 (356)
Q Consensus       263 ~a~n-~~g~~~~~~~l~  278 (356)
                      .+.+ ..|..++.+.|.
T Consensus        82 ~v~~~p~g~~~~~~~L~   98 (100)
T cd05888          82 RVITFPAGNFEAELVLT   98 (100)
T ss_pred             EEEeCCCCCeeeEEEEE
Confidence            9998 666666666554

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.34  E-value=3.7e-06  Score=57.64  Aligned_cols=70  Identities=20%  Similarity=0.305  Sum_probs=48.9

Q ss_pred             eeecCCCeEEEEEEEcC-CCCCeEEEEECCEE-----c--------cCCCceeEEE--eCCEEEEEEccCCCCCCeEEEE
Q psy12422        199 KTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQP-----L--------NSSNILDLKY--KNGVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~-----~--------~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      +.+.+|++++|.|.... .....+.|+|....     +        ....++.+..  ..+...|+|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            36789999999999865 34566899984311     1        0112333321  2456789999999999999999


Q ss_pred             EEEcCC
Q psy12422        263 TATNSL  268 (356)
Q Consensus       263 ~a~n~~  268 (356)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            887764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.32  E-value=4.5e-06  Score=56.45  Aligned_cols=67  Identities=24%  Similarity=0.319  Sum_probs=41.2

Q ss_pred             CCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCce-eEEEe-C-CEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        204 GQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNIL-DLKYK-N-GVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       204 g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~-~~~~~-~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      |+.++|.|.+.|+ |+. .++|.++|..+...... ....+ + .......-.+...+.+.|+|++.+..-.
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~   85 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK   85 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            6789999999985 544 79999999643322111 11111 1 1122223344445889999999887654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.32  E-value=7.3e-06  Score=52.87  Aligned_cols=62  Identities=24%  Similarity=0.385  Sum_probs=40.9

Q ss_pred             ceEEEEEeccC-CC-CeeEEeeCCEEcccCCe---eEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          3 NVIKVKVGSTK-PP-PTVKWYKGNRELSKRDY---SMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         3 ~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~---~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      .++|.|.+.|. |+ ..++|+|||+++.....   .....++.+    .|.|......+...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            47899999775 55 58999999997543211   112234443    45555445567789999997753

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.31  E-value=2.6e-06  Score=57.27  Aligned_cols=66  Identities=17%  Similarity=0.340  Sum_probs=44.0

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcccC--CeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKR--DYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      |+.+.|+|.+ .|+|+|.|+|+.++..+...  .......++.    +.|++..-+..+...++|.|.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            4689999987 78999999999999877211  1112223322    35666654445677999999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd00096 Ig Immunoglobulin domain

Probab=98.29  E-value=6.6e-06  Score=52.28  Aligned_cols=64  Identities=41%  Similarity=0.739  Sum_probs=47.6

Q ss_pred             EEEEEEEcCCCCCeEEEEECCEEccCCCce----eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNIL----DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       207 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      +.|.|.+.+.+.+.+.|++++.........    ..........|.|.+++.+|.|.|.|.+.+..+.
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   68 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT   68 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence            468999988778889999988776543321    1112233468999999999999999999988743

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.28  E-value=6.3e-06  Score=53.25  Aligned_cols=73  Identities=16%  Similarity=0.309  Sum_probs=51.4

Q ss_pred             eecCCCeEEEEEEEcCCC--CCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        200 TIDDGQCLDLSAVVKGDP--EPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~p--~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      .+..|++++|+|.....+  .+.|+|...+.....      ....+..+|.+..++..|+|..+|.+.-..-..++.+.+
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V   83 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI   83 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence            578899999999995544  458999874433221      111234589999999999999999997554444454444


Q ss_pred             e
Q psy12422        278 T  278 (356)
Q Consensus       278 ~  278 (356)
                      .
T Consensus        84 ~   84 (88)
T cd07694          84 K   84 (88)
T ss_pred             E
Confidence            3

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.28  E-value=4.5e-06  Score=58.19  Aligned_cols=67  Identities=22%  Similarity=0.469  Sum_probs=45.7

Q ss_pred             eecCCCeEEEEEEEcCCC-CCeEEEEEC--C---EEc------cC-----------CCceeEE--EeCCEEEEEEccCCC
Q psy12422        200 TIDDGQCLDLSAVVKGDP-EPRVSWTKN--G---QPL------NS-----------SNILDLK--YKNGVASLQIQEVFP  254 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~p-~p~i~W~~~--g---~~~------~~-----------~~~~~~~--~~~~~~~L~i~~v~~  254 (356)
                      .+.+|++++|.|.+.+.. ...+.|++-  |   ..+      ..           ..+....  .......|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            578999999999997644 457999982  2   100      00           1122221  123356799999999


Q ss_pred             CCCeEEEEEEEc
Q psy12422        255 EDEGVYVCTATN  266 (356)
Q Consensus       255 ~d~G~Y~C~a~n  266 (356)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999998764

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.26  E-value=5.7e-06  Score=57.25  Aligned_cols=67  Identities=21%  Similarity=0.340  Sum_probs=46.0

Q ss_pred             eecCCCeEEEEEEEcCCCCCeEEEEEC--C--EEc------cC------------CCceeEEEeCCEEEEEEccCCCCCC
Q psy12422        200 TIDDGQCLDLSAVVKGDPEPRVSWTKN--G--QPL------NS------------SNILDLKYKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~p~p~i~W~~~--g--~~~------~~------------~~~~~~~~~~~~~~L~i~~v~~~d~  257 (356)
                      .+.+|++++|.|.....-...+.|++.  |  ..+      ..            ..++..........|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            467899999999986554556999982  2  111      00            0112222334557899999999999


Q ss_pred             eEEEEEEEc
Q psy12422        258 GVYVCTATN  266 (356)
Q Consensus       258 G~Y~C~a~n  266 (356)
                      |+|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.23  E-value=1.5e-05  Score=56.65  Aligned_cols=63  Identities=24%  Similarity=0.275  Sum_probs=42.5

Q ss_pred             CCceEEEEEeccCC------CCeeEEeeCC--E---E-cc--c----------CCeeE--EecCCeEEEEEeeCCCCCCe
Q psy12422          1 MQNVIKVKVGSTKP------PPTVKWYKGN--R---E-LS--K----------RDYSM--SYSDGVVSMEIIDCKPEDSG   54 (356)
Q Consensus         1 g~~v~l~C~~~g~p------~~~v~W~k~g--~---~-l~--~----------~~~~~--~~~~~~~~L~i~~~~~~D~G   54 (356)
                      |++|+|.|.....+      ...+.|||..  .   . +.  .          .++..  ....+.++|+|.+++.+|+|
T Consensus        14 G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg   93 (119)
T cd05712          14 GLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDSG   93 (119)
T ss_pred             cccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhCe
Confidence            78999999874221      2458999942  1   1 10  0          12222  12455679999999999999


Q ss_pred             EEEEEEEeC
Q psy12422         55 EYKCVATNK   63 (356)
Q Consensus        55 ~Y~C~a~n~   63 (356)
                      .|.|.+...
T Consensus        94 ~Y~C~~~~~  102 (119)
T cd05712          94 KYFFRVELG  102 (119)
T ss_pred             EEEEEEEcC
Confidence            999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.23  E-value=1.5e-05  Score=56.35  Aligned_cols=72  Identities=21%  Similarity=0.402  Sum_probs=51.2

Q ss_pred             CCceeecCCCeEEEEEEEc-CCCCCeEEEEECCE-----Ecc---C-----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQ-----PLN---S-----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~-----~~~---~-----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      +..+.+.+|+++.|.|... ......+.|++...     .+.   .           ..+..+...  ....+|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            4567899999999999998 44566799998221     111   0           111222222  335789999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy12422        254 PEDEGVYVCTATNS  267 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~  267 (356)
                      .+|+|.|.|.+...
T Consensus        88 ~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   88 PSDSGTYFCQVSTS  101 (114)
T ss_dssp             GGGEEEEEEEEEES
T ss_pred             cCcCEEEEEEEEEC
Confidence            99999999999887

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.22  E-value=2.9e-05  Score=54.02  Aligned_cols=70  Identities=19%  Similarity=0.339  Sum_probs=44.6

Q ss_pred             eecCCCeEEEEEEEcC-CCC-CeEEEEECCEEccCCCceeEEEeCC-----EEEEEEccCCCCCC-eEEEEEEEcCCCc
Q psy12422        200 TIDDGQCLDLSAVVKG-DPE-PRVSWTKNGQPLNSSNILDLKYKNG-----VASLQIQEVFPEDE-GVYVCTATNSLGT  270 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g-~p~-p~i~W~~~g~~~~~~~~~~~~~~~~-----~~~L~i~~v~~~d~-G~Y~C~a~n~~g~  270 (356)
                      ....|+.++|.|.+.| +|. ..++|++||..+...........++     .+.|.+.. ...|. ..|+|.+.+....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l~   94 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTLQ   94 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCCC
Confidence            4557888999999977 554 4799999999986432211111111     23455554 33444 4699999987643

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>smart00406 IGv Immunoglobulin V-Type

Probab=98.18  E-value=7e-06  Score=54.00  Aligned_cols=58  Identities=26%  Similarity=0.338  Sum_probs=39.1

Q ss_pred             ceEEEEEeccCCCC--eeEEeeCCE--E---cc--------------cCCeeEEec--CCeEEEEEeeCCCCCCeEEEEE
Q psy12422          3 NVIKVKVGSTKPPP--TVKWYKGNR--E---LS--------------KRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         3 ~v~l~C~~~g~p~~--~v~W~k~g~--~---l~--------------~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      +|+|.|.......+  .+.||+...  .   +.              ..++.....  .+.++|+|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            58999998654443  799999431  1   10              012222222  5667999999999999999996


Q ss_pred             E
Q psy12422         60 A   60 (356)
Q Consensus        60 a   60 (356)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.18  E-value=2.5e-05  Score=53.31  Aligned_cols=75  Identities=25%  Similarity=0.289  Sum_probs=47.0

Q ss_pred             CCeEEEEEEEcCCCC-CeEEEEECCE----Ecc-----CC--------CceeE-EEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        204 GQCLDLSAVVKGDPE-PRVSWTKNGQ----PLN-----SS--------NILDL-KYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       204 g~~~~l~C~~~g~p~-p~i~W~~~g~----~~~-----~~--------~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      |++++|.|....... -.+.|+|...    .+.     ..        .+..+ ....+..+|+|.+++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998754433 3599998421    100     00        01111 11123478999999999999999987


Q ss_pred             E-cCCCceEEEEEEe
Q psy12422        265 T-NSLGTAETKCKLT  278 (356)
Q Consensus       265 ~-n~~g~~~~~~~l~  278 (356)
                      . .+.|.....+.|.
T Consensus        81 ~~~p~g~~~~~~~L~   95 (97)
T cd05846          81 NTFPDGSKSGTMCLT   95 (97)
T ss_pred             EeCCCCCeeeEEEEE
Confidence            6 4556655555543

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.17  E-value=1.8e-05  Score=51.00  Aligned_cols=63  Identities=25%  Similarity=0.342  Sum_probs=41.4

Q ss_pred             EEEEEEEcCC-CC-CeEEEEECCEEccCCCcee-EEE-eCC----EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        207 LDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILD-LKY-KNG----VASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       207 ~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~-~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ++|.|.+.|+ |+ ..+.|+|||..+..+.... ... .++    .+.|.|.....++...|+|++.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~   72 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL   72 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence            6899999875 55 4799999998754332111 111 111    24566666666778899999987653

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.16  E-value=3.7e-05  Score=51.81  Aligned_cols=74  Identities=26%  Similarity=0.390  Sum_probs=49.2

Q ss_pred             CeEEEEEEEcCCC-CCeEEEEECC----EEccC-------------CCceeEE-EeCCEEEEEEccCCCCCCeEEEEEE-
Q psy12422        205 QCLDLSAVVKGDP-EPRVSWTKNG----QPLNS-------------SNILDLK-YKNGVASLQIQEVFPEDEGVYVCTA-  264 (356)
Q Consensus       205 ~~~~l~C~~~g~p-~p~i~W~~~g----~~~~~-------------~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a-  264 (356)
                      ++++|.|.....+ ...|+|.|..    ..+..             ..+..+. ...+..+|.|.+++.+|.|.|.|.+ 
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            3689999986433 3459998832    11110             0122221 1233568999999999999999996 


Q ss_pred             EcCCCceEEEEEEe
Q psy12422        265 TNSLGTAETKCKLT  278 (356)
Q Consensus       265 ~n~~g~~~~~~~l~  278 (356)
                      ..+.|..+++..|.
T Consensus        81 tfP~G~~~~~~~l~   94 (96)
T cd05887          81 TFPLGNTQSSTTVT   94 (96)
T ss_pred             eCCCCCeeEEEEEE
Confidence            56788888887775

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.16  E-value=3.1e-05  Score=53.88  Aligned_cols=63  Identities=22%  Similarity=0.323  Sum_probs=41.4

Q ss_pred             CCceEEEEEecc-CCC-CeeEEeeCCEEcccCCeeEE-ecCC-eE----EEEEeeCCCCCCe-EEEEEEEeCC
Q psy12422          1 MQNVIKVKVGST-KPP-PTVKWYKGNRELSKRDYSMS-YSDG-VV----SMEIIDCKPEDSG-EYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~~~~~-~~~~-~~----~L~i~~~~~~D~G-~Y~C~a~n~~   64 (356)
                      |+.++|.|.+.| +|. ..++|+|||+.+........ ..++ .+    .|.+. +...|.| .|+|.+.+..
T Consensus        21 g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          21 GQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             CCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCC
Confidence            567899999966 564 58999999999864322222 2232 33    34444 3455555 5999998864

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.14  E-value=3e-05  Score=52.31  Aligned_cols=72  Identities=24%  Similarity=0.219  Sum_probs=44.2

Q ss_pred             cCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCcee-EEEe--CCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        202 DDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILD-LKYK--NGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       202 ~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~-~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      .+|+..+|.|.+.| +|.. .++|++||..+....... ....  +.......-.+...+...|+|++.+.......
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~~~~   88 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQEPL   88 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCCCce
Confidence            46888999999988 4544 589999999876541111 1111  11112222233445667999999987655433

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.13  E-value=2.1e-05  Score=53.16  Aligned_cols=64  Identities=16%  Similarity=0.311  Sum_probs=41.3

Q ss_pred             CCceEEEEEeccC-CCC-eeEEeeCCEEcccCC---eeEEecCCeEEE-EEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-PPP-TVKWYKGNRELSKRD---YSMSYSDGVVSM-EIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~-~v~W~k~g~~l~~~~---~~~~~~~~~~~L-~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+.++|.|.+.|. |+. .++|+|+|+.+....   ......++.+.+ ....+...|.+.|+|++.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            4689999999885 554 889999997443221   112234444322 223344568899999998764

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=98.13  E-value=1.2e-05  Score=53.96  Aligned_cols=69  Identities=13%  Similarity=0.214  Sum_probs=43.4

Q ss_pred             ceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422          3 NVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTDETNCV   72 (356)
Q Consensus         3 ~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   72 (356)
                      -+.++|.+ .|+|.+.|+||++....... ......++.    +.|.+..-..+|...|+|++.|........+.
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~-~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~   90 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNANT-TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP   90 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCeeE-EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence            46789988 68999999999982211111 111222332    36777665666677999999997644433333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.12  E-value=3.6e-05  Score=51.91  Aligned_cols=64  Identities=22%  Similarity=0.389  Sum_probs=41.5

Q ss_pred             CCceEEEEEecc-CCCC-eeEEeeCCEEcccC---CeeEEecCCeEEE-EEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGST-KPPP-TVKWYKGNRELSKR---DYSMSYSDGVVSM-EIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~-~v~W~k~g~~l~~~---~~~~~~~~~~~~L-~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+.++|.|.+.| +|.. .++|+|||+++...   .......++.+.+ ....+...+...|+|.+.+..
T Consensus        14 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          14 SHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             CCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            567899999977 4654 78999999998653   1112233443321 112334456779999998764

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.11  E-value=2.7e-05  Score=55.38  Aligned_cols=72  Identities=21%  Similarity=0.337  Sum_probs=47.5

Q ss_pred             CCceeecCCCeEEEEEEEcCCC------CCeEEEEECCE-----E-cc--C-C--------CceeE--EEeCCEEEEEEc
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP------EPRVSWTKNGQ-----P-LN--S-S--------NILDL--KYKNGVASLQIQ  250 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p------~p~i~W~~~g~-----~-~~--~-~--------~~~~~--~~~~~~~~L~i~  250 (356)
                      |..+.+.+|+.++|.|.....+      ...+.|++...     . +.  . .        .++..  ....+...|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            3456789999999999875221      24589998321     1 10  0 0        12222  113445789999


Q ss_pred             cCCCCCCeEEEEEEEcC
Q psy12422        251 EVFPEDEGVYVCTATNS  267 (356)
Q Consensus       251 ~v~~~d~G~Y~C~a~n~  267 (356)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999988764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.09  E-value=1.7e-05  Score=53.38  Aligned_cols=70  Identities=20%  Similarity=0.303  Sum_probs=44.0

Q ss_pred             CCCeEEEEEEEcC-CCC-CeEEEEECCEEccCCCcee--EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        203 DGQCLDLSAVVKG-DPE-PRVSWTKNGQPLNSSNILD--LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       203 ~g~~~~l~C~~~g-~p~-p~i~W~~~g~~~~~~~~~~--~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      .++.++|.|.+.| +|. ..|+|++||..+.......  ....++    .+.|.+..-...+...|+|++.+......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~   90 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE   90 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence            4566899999988 554 4599999999874332111  111111    23455554444467799999998765543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.08  E-value=3.1e-05  Score=51.88  Aligned_cols=67  Identities=19%  Similarity=0.186  Sum_probs=42.1

Q ss_pred             cCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeEEE---eCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        202 DDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDLKY---KNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ..|...+|.|.+.|+ |+ ..++|++||..+. ........   ++.......-.+...+...|+|++.....
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l   84 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM   84 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence            446667999999884 53 3489999999987 33221111   12112222233456677899999988654

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.08  E-value=3e-05  Score=52.19  Aligned_cols=65  Identities=12%  Similarity=0.178  Sum_probs=41.5

Q ss_pred             CceEEEEEecc-CCC-CeeEEeeCCEEcccCC---eeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          2 QNVIKVKVGST-KPP-PTVKWYKGNRELSKRD---YSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         2 ~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~---~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      +.+.|.|.+.| +|. ..|+|+|||+.+....   ......++.+    .|.|....-.+...|+|.+.+....
T Consensus        15 ~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          15 ETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            46899999987 455 5789999999874321   1122334433    3444433333567999999886543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.08  E-value=1.7e-05  Score=56.13  Aligned_cols=62  Identities=18%  Similarity=0.281  Sum_probs=41.6

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--C-EE--c---c------------cCCeeEEec--CCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--N-RE--L---S------------KRDYSMSYS--DGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g-~~--l---~------------~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|...+.-  ...+.|||.  | .+  |   .            .+++.....  ...+.|+|.+++.+|+|.|
T Consensus        12 G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~Y   91 (117)
T cd04981          12 GQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVY   91 (117)
T ss_pred             CCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEEE
Confidence            79999999875432  356999993  2 21  1   0            112323222  2346899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|.+..
T Consensus        92 yCa~~~   97 (117)
T cd04981          92 YCARGL   97 (117)
T ss_pred             EEEEEc
Confidence            998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.05  E-value=1.3e-05  Score=54.84  Aligned_cols=70  Identities=16%  Similarity=0.244  Sum_probs=45.4

Q ss_pred             eecCCCeEEEEEEEcC-CC-CCeEEEEECCEEccCCCcee--EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        200 TIDDGQCLDLSAVVKG-DP-EPRVSWTKNGQPLNSSNILD--LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g-~p-~p~i~W~~~g~~~~~~~~~~--~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ....++.++|.|.+.| +| ...|+|++||..+.......  ....++    .+.|.+..-..++...|+|++.+..-
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            4456788999999977 55 34699999999986431111  111122    23455655555567899999988764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.05  E-value=2.7e-05  Score=52.51  Aligned_cols=65  Identities=17%  Similarity=0.335  Sum_probs=41.9

Q ss_pred             CceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCC----eEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          2 QNVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         2 ~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      +...+.|.+ .|+|.+.|+|+++...... .......++    .+.|.+......|...|+|++.|.....
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~-~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEAE-TQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcce-eEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            456789999 7999999999997211110 111122333    2367776656666779999999875443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA03376 BARF1; Provisional

Probab=98.04  E-value=5.6e-05  Score=56.04  Aligned_cols=80  Identities=21%  Similarity=0.264  Sum_probs=53.7

Q ss_pred             ceeecCCCeEEEEEEEcCC---CCCeEEEEECCE----Ec-c------------CCCceeEEEeCCEEEEEEccCCCCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGD---PEPRVSWTKNGQ----PL-N------------SSNILDLKYKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~---p~p~i~W~~~g~----~~-~------------~~~~~~~~~~~~~~~L~i~~v~~~d~  257 (356)
                      .+.+..|+.+.|+|.....   +...|.|+|.+.    .+ .            ....+.+..+.++.+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            3467789999999988522   345699999432    11 0            01122232335778999999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEE
Q psy12422        258 GVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       258 G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      |.|.|............-++
T Consensus       100 GtY~C~fQkge~~~~k~ehL  119 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHL  119 (221)
T ss_pred             ceEEEEEEcCCCceeeeeee
Confidence            99999998766555443333

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.03  E-value=8.7e-05  Score=50.05  Aligned_cols=74  Identities=22%  Similarity=0.312  Sum_probs=47.0

Q ss_pred             CeEEEEEEEcC-CCCCeEEEEECCE----EccC-----C--------CceeEEE-eCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        205 QCLDLSAVVKG-DPEPRVSWTKNGQ----PLNS-----S--------NILDLKY-KNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       205 ~~~~l~C~~~g-~p~p~i~W~~~g~----~~~~-----~--------~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      +.++|.|.... .....++|.|...    .+..     +        +++.+.. .....+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            35789999853 2345688998321    1110     0        1222211 1234689999999999999999986


Q ss_pred             c-CCCceEEEEEEe
Q psy12422        266 N-SLGTAETKCKLT  278 (356)
Q Consensus       266 n-~~g~~~~~~~l~  278 (356)
                      . +.|..++.+.+.
T Consensus        81 t~P~g~~~~~i~~~   94 (96)
T cd05889          81 TYPQGSWEKVIEVV   94 (96)
T ss_pred             eCCCCCeEEEEEEE
Confidence            5 477777776653

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.03  E-value=1.7e-05  Score=54.36  Aligned_cols=71  Identities=21%  Similarity=0.316  Sum_probs=44.0

Q ss_pred             eecCCCeEEEEEEEcCCCCC--eEEEEECCEEccCCCcee--EEEe---CC----EEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        200 TIDDGQCLDLSAVVKGDPEP--RVSWTKNGQPLNSSNILD--LKYK---NG----VASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~~~~--~~~~---~~----~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      .+..|..++|.|.+.|+.++  .++|++||..+.......  ...+   ++    .+.|.+..-...+...|+|++.+..
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            34457789999999885443  489999999876432111  1111   12    2345554333345668999998875


Q ss_pred             Cc
Q psy12422        269 GT  270 (356)
Q Consensus       269 g~  270 (356)
                      ..
T Consensus        92 l~   93 (102)
T cd05768          92 LP   93 (102)
T ss_pred             CC
Confidence            43

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.03  E-value=5.1e-05  Score=51.01  Aligned_cols=65  Identities=25%  Similarity=0.370  Sum_probs=41.0

Q ss_pred             cCCCeEEEEEEEcC-CCC-CeEEEEECCEEccCCCceeEEE---eCC---EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        202 DDGQCLDLSAVVKG-DPE-PRVSWTKNGQPLNSSNILDLKY---KNG---VASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       202 ~~g~~~~l~C~~~g-~p~-p~i~W~~~g~~~~~~~~~~~~~---~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ..|+..+|.|.+.| +|. ..++|.+||..+..+.......   ++.   .+.|.+.   ..+...|+|.+.....
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~l   85 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWGL   85 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCCC
Confidence            34666899999988 453 3589999999876532211111   111   1345443   3466699999988754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.02  E-value=5.1e-05  Score=53.71  Aligned_cols=70  Identities=26%  Similarity=0.443  Sum_probs=46.8

Q ss_pred             CceeecCCCeEEEEEEEcCCC--CCeEEEEE--CCEEcc------C-----------CCceeEEEeC--CEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTK--NGQPLN------S-----------SNILDLKYKN--GVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~--~g~~~~------~-----------~~~~~~~~~~--~~~~L~i~~v~  253 (356)
                      ....+.+|++++|.|...+.-  ...+.|+|  .|....      .           .+++......  ....|+|.+++
T Consensus         5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   84 (117)
T cd04981           5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT   84 (117)
T ss_pred             CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence            445789999999999986433  45599998  221110      0           1222222222  33579999999


Q ss_pred             CCCCeEEEEEEEc
Q psy12422        254 PEDEGVYVCTATN  266 (356)
Q Consensus       254 ~~d~G~Y~C~a~n  266 (356)
                      .+|+|.|.|.+..
T Consensus        85 ~~Dsa~YyCa~~~   97 (117)
T cd04981          85 PEDTAVYYCARGL   97 (117)
T ss_pred             HHHCEEEEEEEEc
Confidence            9999999998765

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.02  E-value=7.8e-05  Score=50.27  Aligned_cols=66  Identities=14%  Similarity=0.248  Sum_probs=43.2

Q ss_pred             CeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeE-EEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        205 QCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDL-KYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       205 ~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      ....+.|.+ .|+|.+.|+|+++   +........ ....+    .+.|.+.....+|...|+|++.|..-....
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~   87 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQ   87 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence            357789999 7899999999997   111111111 11111    256777666666777999999998754433

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.97  E-value=1.8e-05  Score=47.94  Aligned_cols=50  Identities=24%  Similarity=0.278  Sum_probs=34.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |.+|+|+|...+.   .+.|++|+..+.....         .+.+.+-. ++.|.|.|.+.+.
T Consensus         7 GTtVtlTCP~~~~---~i~W~~n~~~~~g~~~---------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           7 GTTVTVTCPLSGD---DIKWKKNDQVSQGSDE---------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             ccEEEEECCCCCC---CceEEeCCccCCCCCc---------eEEeeccC-CCCceEEEEeCCC
Confidence            6789999976532   3999999966653211         33344444 8899999999543

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.94  E-value=7.6e-05  Score=49.99  Aligned_cols=63  Identities=14%  Similarity=0.181  Sum_probs=41.4

Q ss_pred             CCceEEEEEecc-CCC-CeeEEeeCCEEcccCC--eeEEecCCeEEEE-EeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGST-KPP-PTVKWYKGNRELSKRD--YSMSYSDGVVSME-IIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~--~~~~~~~~~~~L~-i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |+..+|.|.+.| +|. ..++|+|||+++....  -.....++.+.+. ...+...+...|+|.+...
T Consensus        15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             CCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            345689999988 454 4689999999986211  1122445554332 2244567888999999875

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.93  E-value=5.4e-05  Score=51.80  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=41.9

Q ss_pred             CCceEEEEEecc-CC-CCeeEEeeCCEEcccCC---eeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGST-KP-PPTVKWYKGNRELSKRD---YSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g-~p-~~~v~W~k~g~~l~~~~---~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      ++.++|.|.+.| +| ...|+|+|||+++....   ......++.+    .|.+......+...|+|.+.+..
T Consensus        17 ~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          17 SGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             CCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            456899999977 45 45789999999985321   1122335544    34444433345689999998764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.92  E-value=4.9e-05  Score=53.08  Aligned_cols=80  Identities=18%  Similarity=0.270  Sum_probs=50.3

Q ss_pred             ceeecCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCce--eEEEeC-C----EEEEEEccCCCCC-CeEEEEEEEcC
Q psy12422        198 DKTIDDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNIL--DLKYKN-G----VASLQIQEVFPED-EGVYVCTATNS  267 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~--~~~~~~-~----~~~L~i~~v~~~d-~G~Y~C~a~n~  267 (356)
                      ...+.+++.++|.|.+.|+ |. ..|+|++||..+......  .....+ +    .+.|.|......+ ...|+|.+.+.
T Consensus        12 ~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~   91 (115)
T cd05769          12 EAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFY   91 (115)
T ss_pred             hHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEe
Confidence            3345567789999999874 54 369999999887653221  111111 1    2456665544434 56999999988


Q ss_pred             CCceEEEEEE
Q psy12422        268 LGTAETKCKL  277 (356)
Q Consensus       268 ~g~~~~~~~l  277 (356)
                      .........-
T Consensus        92 g~~~~~~~~~  101 (115)
T cd05769          92 GGTDTDKWQS  101 (115)
T ss_pred             CCccceeeee
Confidence            7766554443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.91  E-value=5.1e-05  Score=51.31  Aligned_cols=73  Identities=18%  Similarity=0.174  Sum_probs=42.7

Q ss_pred             ceeecCCCeEEEEEEEcCC--CC-CeEEEEECCEEccC-CCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGD--PE-PRVSWTKNGQPLNS-SNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~--p~-p~i~W~~~g~~~~~-~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ...+..|+.++|.|.+.|+  |+ ..++|+|||..... .........++    .+.|.+..-..++.-.|+|.+.+..-
T Consensus         8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696           8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            3456678999999999888  43 34899998743321 10000111111    13444544333445689999998764


Q ss_pred             c
Q psy12422        270 T  270 (356)
Q Consensus       270 ~  270 (356)
                      .
T Consensus        88 ~   88 (96)
T cd07696          88 P   88 (96)
T ss_pred             C
Confidence            4

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.88  E-value=7.6e-05  Score=48.96  Aligned_cols=58  Identities=26%  Similarity=0.390  Sum_probs=38.3

Q ss_pred             eEEEEEEEcCCCCC--eEEEEECCE--E---cc-------------CCCceeEEEe--CCEEEEEEccCCCCCCeEEEEE
Q psy12422        206 CLDLSAVVKGDPEP--RVSWTKNGQ--P---LN-------------SSNILDLKYK--NGVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       206 ~~~l~C~~~g~p~p--~i~W~~~g~--~---~~-------------~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      ++.|.|.+.....+  .+.|++...  .   +.             ...++.....  .+..+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            46899998655543  689988331  0   00             0122333322  4567899999999999999996

>KOG1480|consensus

Probab=97.88  E-value=3.2e-06  Score=75.40  Aligned_cols=171  Identities=18%  Similarity=0.267  Sum_probs=101.2

Q ss_pred             ccccccCccceeeecccCCceee------ecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeeeeec
Q psy12422         89 HNFLYSGDRKYIEKHIRPAPAII------TTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNS  162 (356)
Q Consensus        89 ~~~~~~g~~~~l~c~~~p~p~i~------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (356)
                      ...+..+.++.+.|...|.+.|.      |..+.............+..   .....-+.+............+.++|+.
T Consensus        33 ~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~---~~~~si~Isr~~v~~~~~~~d~~cQc~a  109 (909)
T KOG1480|consen   33 SAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLG---VREVSIDISRQQVETSGGPEDYWCQCVA  109 (909)
T ss_pred             ccceecCCCccceecCCcccccccccChhhhcCccceeeeccCccccee---EEeeeeeeehhhhhcccCccceeeeeee
Confidence            44577899999999999777754      44433322221111111111   1111122222222233444445555554


Q ss_pred             cccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEe
Q psy12422        163 ILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYK  241 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~  241 (356)
                      ....+ ...+......+.+      ..-.+...+.-+.|.++..+.|.|.. .+.|...+.|++++..+....+.....+
T Consensus       110 ~~~~g-~~~s~~a~vr~ay------~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d  182 (909)
T KOG1480|consen  110 WSDDG-TVKSRKATVRIAY------LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD  182 (909)
T ss_pred             ecCCC-cchhhhHHHHHHH------HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhc
Confidence            44433 1122222222211      22233444555678889999999987 7889999999999998887554444333


Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       242 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      .   .|++..++..|.|+|+|+|.|..+..+
T Consensus       183 ~---~li~~~arlsd~~nytc~a~ni~~~r~  210 (909)
T KOG1480|consen  183 H---NLIISQARLSDSGNYTCEATNIVAKRK  210 (909)
T ss_pred             C---Cccccchhhhhcccceeeeehhhcccc
Confidence            3   589999999999999999999988544

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.87  E-value=0.0002  Score=48.20  Aligned_cols=65  Identities=12%  Similarity=0.159  Sum_probs=42.2

Q ss_pred             eEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEE--eCC---EEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        206 CLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKY--KNG---VASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       206 ~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~--~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      -+.+.|.+ .|.|.+.|+|+++.   ..........  ++.   .+.|.+..-..+|...|+|+|.|..-....
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~---~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~   87 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTL---GGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQ   87 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCC---CCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence            47899987 68999999999972   1111111111  111   246777666666777999999998754433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA02633 hypothetical protein; Provisional

Probab=97.86  E-value=6.8e-05  Score=44.45  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=33.3

Q ss_pred             EEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422         42 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus        42 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      .|.|.++..+|+|.|.|..+|..-....++.|.|...
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            7999999999999999999999888888888888754

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.85  E-value=4.1e-05  Score=46.38  Aligned_cols=51  Identities=29%  Similarity=0.547  Sum_probs=36.5

Q ss_pred             CCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       203 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .|.+|+|+|...+..   +.|.+|+..+.....          .+.+.+-. +++|.|.|.+.+.
T Consensus         6 sGTtVtlTCP~~~~~---i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           6 SGTTVTVTCPLSGDD---IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             eccEEEEECCCCCCC---ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence            589999999875222   999999966554221          34455555 8899999999644

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.81  E-value=7.2e-05  Score=51.31  Aligned_cols=64  Identities=16%  Similarity=0.264  Sum_probs=39.5

Q ss_pred             CCceEEEEEeccC-CCC-eeEEeeCCEEcccCCe-e--EEe---cCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-PPP-TVKWYKGNRELSKRDY-S--MSY---SDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~-~v~W~k~g~~l~~~~~-~--~~~---~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+.++|.|.+.|. |.. .++|+|||+++..... .  ...   .++.+    .|.|..-...+...|+|.+.+..
T Consensus        16 ~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          16 QETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             CCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            4679999999885 443 5799999998864321 1  111   13443    34443222234568999998764

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.81  E-value=0.00013  Score=48.07  Aligned_cols=66  Identities=24%  Similarity=0.411  Sum_probs=44.8

Q ss_pred             cCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeEEE--eCCE----EEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        202 DDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDLKY--KNGV----ASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       202 ~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~~~--~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ..+..++|.|.+.+ +|.. .|.|+++|..+..........  .++.    +.|.+.   ..+...|+|++.+....
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            34889999999977 5544 599999999887544332222  2222    345555   56667999999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.81  E-value=0.00017  Score=48.50  Aligned_cols=61  Identities=16%  Similarity=0.256  Sum_probs=40.4

Q ss_pred             CCceEEEEEecc-CCC-CeeEEeeCCEEcccCCe---eEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGST-KPP-PTVKWYKGNRELSKRDY---SMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~~---~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+..+|.|.+.| +|. ..++|+|||+++..+..   .....++.+    .|.+.   ..+...|+|.+....
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~   84 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence            345799999988 454 47899999999865321   122344544    34443   456679999998753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.80  E-value=0.00015  Score=48.86  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=39.0

Q ss_pred             ecCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeEEE-eCCE----EEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        201 IDDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDLKY-KNGV----ASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       201 v~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~~~-~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      +..+..++|.|.|.| +|.. .++|.+||..+..+....... +++.    +.|.+..-.  ....|+|.+....
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            444677899999988 4533 489999999875432111111 1111    234443321  2345999998844

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.75  E-value=0.00021  Score=47.07  Aligned_cols=65  Identities=25%  Similarity=0.310  Sum_probs=42.7

Q ss_pred             CCceEEEEEecc-CCCC-eeEEeeCCEEcccCCee--EE-ecCCeEEEE-EeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGST-KPPP-TVKWYKGNRELSKRDYS--MS-YSDGVVSME-IIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~-~v~W~k~g~~l~~~~~~--~~-~~~~~~~L~-i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      ++.+.|.|.+.| +|.. .|+|++||+.+......  .. ..++.+++. ...+...+...|+|.+.+...
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESL   78 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTS
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCC
Confidence            578999999977 4544 69999999998754211  12 356654322 122235666789999987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.72  E-value=0.00022  Score=48.21  Aligned_cols=64  Identities=16%  Similarity=0.258  Sum_probs=37.7

Q ss_pred             CCceEEEEEeccC--CC-CeeEEeeCCEEccc-C-CeeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK--PP-PTVKWYKGNRELSK-R-DYSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~--p~-~~v~W~k~g~~l~~-~-~~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+.++|.|.+.|.  |+ ..++|+|||+.... . .......++.+    .|.+..-.-.+.-.|+|.+.+..
T Consensus        14 ~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696          14 TKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             CCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            5789999999887  54 36899998753321 1 11122344433    33333222223458999998764

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.71  E-value=0.0002  Score=48.04  Aligned_cols=64  Identities=13%  Similarity=0.173  Sum_probs=41.7

Q ss_pred             CCceEE-EEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIK-VKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l-~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |+.+.+ .|.+ .|+|++.|+|+.+....... ......++.    +.|.+...+..|.-.++|++.+..-
T Consensus        16 g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~-~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          16 GNGTTLAACCAAEGRPAADVTWETNVYGTSES-HSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             CcceeEEEEEccCCccCCEeEEeCCCCCccce-eeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            456677 8887 88999999999874332211 111222332    2566666666777799999988743

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.67  E-value=0.00036  Score=47.05  Aligned_cols=59  Identities=14%  Similarity=0.237  Sum_probs=36.3

Q ss_pred             CceEEEEEecc-CCCC-eeEEeeCCEEcccCC--eeEEecCCeE----EEEEeeCCCC-CCeEEEEEEEeC
Q psy12422          2 QNVIKVKVGST-KPPP-TVKWYKGNRELSKRD--YSMSYSDGVV----SMEIIDCKPE-DSGEYKCVATNK   63 (356)
Q Consensus         2 ~~v~l~C~~~g-~p~~-~v~W~k~g~~l~~~~--~~~~~~~~~~----~L~i~~~~~~-D~G~Y~C~a~n~   63 (356)
                      ..++|.|.+.| +|.. .++|+|||+.+..+.  ......++.+    .|+|.   .. ....|+|.+...
T Consensus        17 ~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt---~~~~~~~ysC~V~H~   84 (96)
T cd07697          17 GQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT---KDSLGKKFRCIYKHE   84 (96)
T ss_pred             CCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC---chhCCCeEEEEEEEC
Confidence            46899999987 4543 689999999875431  1112222233    33333   33 234599999874

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.65  E-value=0.0003  Score=42.96  Aligned_cols=49  Identities=16%  Similarity=0.358  Sum_probs=37.6

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      .++|.|+|.+.    ..|.|++ |..+....         ..+|.+.+...+-.|.|.|.+.+
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            45799999762    5599999 65554322         23788999999999999999988

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.63  E-value=0.00017  Score=44.07  Aligned_cols=48  Identities=17%  Similarity=0.366  Sum_probs=33.8

Q ss_pred             CceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         2 ~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      +.|.|+|.+.    ..|+|+| |..+....        ..+|.+-....+-.|.|.|.+.+
T Consensus         7 ~~V~L~C~~~----tsi~W~k-G~~~~~~~--------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           7 GKVFLKCNGA----TNITWKK-GKEILEVS--------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ceEEEEecCC----CcEEEec-Cccccccc--------ccEEeccCcccCCCcceEecCcc
Confidence            4689999762    4599999 66553211        22666666666778999999876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.62  E-value=4.8e-05  Score=53.55  Aligned_cols=75  Identities=17%  Similarity=0.210  Sum_probs=45.8

Q ss_pred             CCceEEEEEeccC-----CCCeeEEeeCCEEccc---CCee-----------EEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTK-----PPPTVKWYKGNRELSK---RDYS-----------MSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~-----p~~~v~W~k~g~~l~~---~~~~-----------~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      +++|.|.|.+...     +.-.|.|..+|+.+-.   ....           .....|..+|.+...+.- .|+|+|.+.
T Consensus        27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt  105 (130)
T PF08204_consen   27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVT  105 (130)
T ss_dssp             -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEE
T ss_pred             CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEE
Confidence            5889999999652     2235899999987631   1111           112345667888875544 899999999


Q ss_pred             eCCceeEEEEEEEEe
Q psy12422         62 NKHGTDETNCVVIVE   76 (356)
Q Consensus        62 n~~g~~~~~~~l~v~   76 (356)
                      ......+..+.|...
T Consensus       106 ~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  106 ELSREGETTIELKYR  120 (130)
T ss_dssp             ETTEEEEEEEEEEE-
T ss_pred             ecCCCceEEEEEEEE
Confidence            887777777777663

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.62  E-value=0.00046  Score=46.60  Aligned_cols=66  Identities=12%  Similarity=0.215  Sum_probs=39.2

Q ss_pred             CCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCce--eEEE-eCC---EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        203 DGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNIL--DLKY-KNG---VASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       203 ~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~--~~~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      .++.++|.|.+.|+ |. ..|+|++||.. ..+...  .... ++.   .+.|.+..-.-.....|+|++.+...
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~~   88 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPST   88 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCCC
Confidence            45678999999885 43 35899999997 332111  0111 121   13444443332235689999998763

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.59  E-value=0.0049  Score=52.67  Aligned_cols=78  Identities=14%  Similarity=0.101  Sum_probs=55.0

Q ss_pred             EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeeccc---C--Cceeeeccc
Q psy12422         41 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---P--APAIITTRQ  115 (356)
Q Consensus        41 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p--~p~i~w~~~  115 (356)
                      +.|+|..+...++|.|+=...+..+.......+.|.-..  ++...+....+-+|+...-.|.+.   |  ...+.|+.+
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr--~Psvsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYN--APLVDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEec--CCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            569999999999999997766655544444555553221  112445556677899999999987   3  223899999


Q ss_pred             ccccC
Q psy12422        116 EIKSS  120 (356)
Q Consensus       116 ~~~~~  120 (356)
                      +..+.
T Consensus       276 g~~V~  280 (486)
T PHA03273        276 AKEVD  280 (486)
T ss_pred             Ceecc
Confidence            88765

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.59  E-value=0.00048  Score=45.92  Aligned_cols=69  Identities=16%  Similarity=0.217  Sum_probs=42.7

Q ss_pred             ecCCCeEEEEEEEc-CCCC--CeEEEEECCEEccCCCceeE----EEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        201 IDDGQCLDLSAVVK-GDPE--PRVSWTKNGQPLNSSNILDL----KYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       201 v~~g~~~~l~C~~~-g~p~--p~i~W~~~g~~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      +.+|..+++.|.+. ++|.  ..+.|++....+....-...    ........+++...+.+|...|+|+|.=..+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence            57899999999994 5675  56999987766654331110    0011123556655444444499999975444

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.58  E-value=0.00035  Score=46.53  Aligned_cols=62  Identities=16%  Similarity=0.146  Sum_probs=40.5

Q ss_pred             CCceEEEEEe-ccCCC--CeeEEeeCCEEcccCCeeEE-----ecCCeEEEEEeeCCCCCCe-EEEEEEEeC
Q psy12422          1 MQNVIKVKVG-STKPP--PTVKWYKGNRELSKRDYSMS-----YSDGVVSMEIIDCKPEDSG-EYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~--~~v~W~k~g~~l~~~~~~~~-----~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~   63 (356)
                      |..+++.|.+ .+.|.  ..|.|||....+....+...     .......+++.. +++|.| .|.|+|.-.
T Consensus        15 G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~   85 (99)
T cd07689          15 GKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH   85 (99)
T ss_pred             CceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence            7899999999 45666  57999997776654332111     011223566665 477776 999999644

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.58  E-value=0.00077  Score=45.24  Aligned_cols=70  Identities=19%  Similarity=0.251  Sum_probs=47.0

Q ss_pred             ceeecCCCeEEE-EEEE-cCCCCCeEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        198 DKTIDDGQCLDL-SAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       198 ~~~v~~g~~~~l-~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ...+.+|..+.+ .|.+ .|.|.+.|+|+.+.......  ......++    .+.|.+..-+.+|...++|++.+..-
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~--~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSES--HSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccce--eeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            346778999998 9987 88999999999863222110  00111111    24677766777788899999998854

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.53  E-value=0.0011  Score=45.64  Aligned_cols=67  Identities=13%  Similarity=0.154  Sum_probs=45.5

Q ss_pred             CceeecCCCeEEEEEEEcCCCC---CeEEEEE--CCEEcc--------------CCCcee--EEEeCCEEEEEEccCCCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPE---PRVSWTK--NGQPLN--------------SSNILD--LKYKNGVASLQIQEVFPE  255 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~---p~i~W~~--~g~~~~--------------~~~~~~--~~~~~~~~~L~i~~v~~~  255 (356)
                      ....+..|..++|.|.+.|+-.   -.+.|.|  +| .+.              ...+..  .....+...|.|.+++.+
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence            3456788999999999977553   3488987  33 210              111111  222344578999999999


Q ss_pred             CCeEEEEEE
Q psy12422        256 DEGVYVCTA  264 (356)
Q Consensus       256 d~G~Y~C~a  264 (356)
                      |.+.|.|..
T Consensus        85 DTa~Y~Ca~   93 (115)
T cd05721          85 QTDIYFCKI   93 (115)
T ss_pred             HCeEEEEEe
Confidence            999999955

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.51  E-value=0.00092  Score=46.75  Aligned_cols=67  Identities=12%  Similarity=0.228  Sum_probs=41.7

Q ss_pred             CceEEEEEecc-CCC-CeeEEeeCCEEcccCCe---eEEe-cCCeE----EEEEeeCCCCC-CeEEEEEEEeCCceeE
Q psy12422          2 QNVIKVKVGST-KPP-PTVKWYKGNRELSKRDY---SMSY-SDGVV----SMEIIDCKPED-SGEYKCVATNKHGTDE   68 (356)
Q Consensus         2 ~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~~---~~~~-~~~~~----~L~i~~~~~~D-~G~Y~C~a~n~~g~~~   68 (356)
                      +.++|.|.+.| +|. ..|+|+|||+.+.....   .... .++.+    .|.|......| ...|+|.+.+......
T Consensus        19 ~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~   96 (115)
T cd05769          19 RKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT   96 (115)
T ss_pred             CCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence            46899999977 465 37899999998864321   1112 22333    45554333223 5689999987744443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PHA02633 hypothetical protein; Provisional

Probab=97.44  E-value=0.00058  Score=40.60  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=34.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422        293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  334 (356)
                      +...|.|-.+..+|+|.|.|..+|.-=-.+.++.|+|...+.
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~   57 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIE   57 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeeccc
Confidence            445788999999999999999998766677788888877664

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.37  E-value=0.0008  Score=45.44  Aligned_cols=74  Identities=18%  Similarity=0.195  Sum_probs=41.9

Q ss_pred             CCceeecCCCeEEEEEEEcC-C-CC-CeEEEEECCEEccCCCceeEEEeCC---EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKG-D-PE-PRVSWTKNGQPLNSSNILDLKYKNG---VASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g-~-p~-p~i~W~~~g~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |....+..+..++|.|.+.+ + |. ..|+|.++|..-..........++.   .+.|.+..-.......|+|++.+...
T Consensus        11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            33344557889999999987 4 43 3599999987511000000111111   13454443322344579999988765

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.36  E-value=0.0012  Score=45.47  Aligned_cols=59  Identities=10%  Similarity=0.115  Sum_probs=40.8

Q ss_pred             CCceEEEEEeccCC--C-CeeEEeeC--CEEcc---------------cCCe--eEEecCCeEEEEEeeCCCCCCeEEEE
Q psy12422          1 MQNVIKVKVGSTKP--P-PTVKWYKG--NRELS---------------KRDY--SMSYSDGVVSMEIIDCKPEDSGEYKC   58 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~-~~v~W~k~--g~~l~---------------~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C   58 (356)
                      |+.++|.|++.|.-  . ..+.|+|.  | .+.               .+++  .....+....|+|.+++.+|++.|.|
T Consensus        13 ~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~C   91 (115)
T cd05721          13 NGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFC   91 (115)
T ss_pred             CCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEE
Confidence            57899999996543  3 45799993  3 211               1111  12344566799999999999999999


Q ss_pred             EE
Q psy12422         59 VA   60 (356)
Q Consensus        59 ~a   60 (356)
                      ..
T Consensus        92 a~   93 (115)
T cd05721          92 KI   93 (115)
T ss_pred             Ee
Confidence            65

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.35  E-value=0.0016  Score=43.96  Aligned_cols=62  Identities=13%  Similarity=0.223  Sum_probs=37.7

Q ss_pred             CceEEEEEeccC-CC-CeeEEeeCCEEcccCC---eeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          2 QNVIKVKVGSTK-PP-PTVKWYKGNRELSKRD---YSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         2 ~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~---~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      +.++|.|.+.|. |. ..|+|+|||+. ....   ......++.+    .|+|..-.-.....|+|++.+..
T Consensus        17 ~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          17 DSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            568999999874 54 36899999998 3221   1122224544    34443322122567999998764

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.34  E-value=0.023  Score=48.94  Aligned_cols=206  Identities=16%  Similarity=0.137  Sum_probs=104.4

Q ss_pred             CeEEEEEeeCCCCCCeEEEEEEEeCC-ce--eEEEEEEEEeccccchhhhhhcccccccCccceeeeccc---C--Ccee
Q psy12422         39 GVVSMEIIDCKPEDSGEYKCVATNKH-GT--DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---P--APAI  110 (356)
Q Consensus        39 ~~~~L~i~~~~~~D~G~Y~C~a~n~~-g~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p--~p~i  110 (356)
                      +.+.|+|.++...++|.|+=++.+.. +.  .+..+.+.+...+    ...+...-+-+|+...-.|.+.   |  ...+
T Consensus       287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~P----sVsV~p~PVL~Ge~YkAtC~vA~YYPp~Svrl  362 (566)
T PHA03269        287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRP----NITVIGDPVLLGNPYAAYCKVNKYYPPHSVIV  362 (566)
T ss_pred             CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCC----CccccCCccccCCCceEEEEeeeecCCCceEE
Confidence            34579999999999999987765432 22  2333444443332    3445556677899999999987   3  2238


Q ss_pred             eecccccccCCccccCCCCceEEEEeeccccccccccccC-----CCccceeeeeeccccCCCCCccc-ccceeeecCCC
Q psy12422        111 ITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNAT-----SPSKKITRRMNSILDTDSPSRSR-STTKELIMPPD  184 (356)
Q Consensus       111 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  184 (356)
                      .|+.++..+.......      .......|.++.+.....     .....-...|...-..+.....+ +....-.+   
T Consensus       363 rWf~ng~~V~~~~it~------t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~V---  433 (566)
T PHA03269        363 KWTSNFGNIGKNFITD------AIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDV---  433 (566)
T ss_pred             EEEeCCcccCcccccc------ceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCcc---
Confidence            9999977765321111      001111222222222211     11112233443322222222221 22222222   


Q ss_pred             CCCCCCeecccCCceeecCCCeEEEEEEEcCCCC--CeEEEEECCEEccCCCceeEEE-eCCEEEEEEcc---CCCCC-C
Q psy12422        185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE--PRVSWTKNGQPLNSSNILDLKY-KNGVASLQIQE---VFPED-E  257 (356)
Q Consensus       185 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~g~~~~~~~~~~~~~-~~~~~~L~i~~---v~~~d-~  257 (356)
                        +.+|.+..     .+..|.   .-|.+.-.|.  ..+.|+-++............. .+.-+...|++   ++.+| -
T Consensus       434 --Y~~PtISm-----~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgp  503 (566)
T PHA03269        434 --YPFPNVSI-----EIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGP  503 (566)
T ss_pred             --ccCCeEEE-----EEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCc
Confidence              55565543     233333   3599988875  3699998765543332211110 01123455555   34444 2


Q ss_pred             eEEEEEEEcC
Q psy12422        258 GVYVCTATNS  267 (356)
Q Consensus       258 G~Y~C~a~n~  267 (356)
                      -.|+|++...
T Consensus       504 veYTCrL~GY  513 (566)
T PHA03269        504 ITYSCHLDGY  513 (566)
T ss_pred             eeEEEEEeec
Confidence            4899988654

>PHA02982 hypothetical protein; Provisional

Probab=97.28  E-value=0.00096  Score=50.32  Aligned_cols=75  Identities=20%  Similarity=0.298  Sum_probs=50.8

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCC-EEcc-------------------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGN-RELS-------------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g-~~l~-------------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      +++|.|.|.. ++.---...|+++. .-|.                   ...+........++|+|.+++.+..|-|+|.
T Consensus        39 d~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~  118 (251)
T PHA02982         39 DQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCFTCE  118 (251)
T ss_pred             CCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCceEEE
Confidence            5889999996 33333468999843 3222                   0123344566677999999999999999999


Q ss_pred             EEeCCceeEE-EEEEEE
Q psy12422         60 ATNKHGTDET-NCVVIV   75 (356)
Q Consensus        60 a~n~~g~~~~-~~~l~v   75 (356)
                      +....+..+. ..-|.|
T Consensus       119 ~ks~~~k~E~c~kCl~V  135 (251)
T PHA02982        119 AKDAEGKEETCEKCLEI  135 (251)
T ss_pred             EecCCCchheeheeeeE
Confidence            9886655443 333444

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.10  E-value=0.0081  Score=50.23  Aligned_cols=37  Identities=19%  Similarity=0.199  Sum_probs=28.0

Q ss_pred             CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12422        293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV  329 (356)
Q Consensus       293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  329 (356)
                      ..++|+|+++.-+.+|.|+|.|....-..+....|.|
T Consensus       344 k~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V  380 (500)
T PHA02914        344 KNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKV  380 (500)
T ss_pred             hhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEe
Confidence            4589999999999999999999865444444444444

>KOG1480|consensus

Probab=97.03  E-value=0.00026  Score=63.78  Aligned_cols=64  Identities=23%  Similarity=0.333  Sum_probs=50.4

Q ss_pred             CceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          2 QNVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         2 ~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      ..+.|.|.. .+.|...+.|||++..+...+..+...+.  .|.|..++..|+|+|+|+|.|..+..
T Consensus       145 s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~--~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  145 TTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDH--NLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             ccccccccCcccchhhhhhccccCCCCCccccchhhhcC--Cccccchhhhhcccceeeeehhhccc
Confidence            456777776 78999999999999888765433344444  68999999999999999999876554

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.97  E-value=0.00052  Score=48.41  Aligned_cols=78  Identities=21%  Similarity=0.211  Sum_probs=45.6

Q ss_pred             eecCCCeEEEEEEEcCCC-----CCeEEEEECCEEccCCCce--eE-----------EEeCCEEEEEEccCCCCCCeEEE
Q psy12422        200 TIDDGQCLDLSAVVKGDP-----EPRVSWTKNGQPLNSSNIL--DL-----------KYKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~p-----~p~i~W~~~g~~~~~~~~~--~~-----------~~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      ...-++++.|.|.+...+     ...|.|..+|..+-.-+..  ..           ....+..+|.+...+.- .|+|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            345588999999996522     2359999988876421110  00           00123345777774444 89999


Q ss_pred             EEEEcCCCceEEEEEEe
Q psy12422        262 CTATNSLGTAETKCKLT  278 (356)
Q Consensus       262 C~a~n~~g~~~~~~~l~  278 (356)
                      |++.......+..+.|.
T Consensus       102 CeVt~~~~ege~~i~Lk  118 (130)
T PF08204_consen  102 CEVTELSREGETTIELK  118 (130)
T ss_dssp             EEEEETTEEEEEEEEEE
T ss_pred             EEEEecCCCceEEEEEE
Confidence            99999888888777775

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG4597|consensus

Probab=96.97  E-value=0.0035  Score=53.50  Aligned_cols=89  Identities=15%  Similarity=0.159  Sum_probs=65.7

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEE---CCEEccCCCceeEE--EeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK---NGQPLNSSNILDLK--YKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~---~g~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      +.+...+....+..|++..++|.+.|.|.+.|.|.+   |+..+......+..  .......|.|-+....|+|.|+|.|
T Consensus       197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~  276 (560)
T KOG4597|consen  197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA  276 (560)
T ss_pred             cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence            555555667788899999999999999999999976   33332211111111  1122357999999999999999999


Q ss_pred             EcCCCceEEEEEEe
Q psy12422        265 TNSLGTAETKCKLT  278 (356)
Q Consensus       265 ~n~~g~~~~~~~l~  278 (356)
                      .|..|...+.+.+.
T Consensus       277 rcg~g~~~rdv~c~  290 (560)
T KOG4597|consen  277 RCGAGFLRRDVPCS  290 (560)
T ss_pred             ccccceeeccceee
Confidence            99999888877766

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.94  E-value=0.12  Score=44.11  Aligned_cols=77  Identities=9%  Similarity=-0.030  Sum_probs=53.3

Q ss_pred             EEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeeccc---C--Cceeeecccc
Q psy12422         42 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---P--APAIITTRQE  116 (356)
Q Consensus        42 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p--~p~i~w~~~~  116 (356)
                      .|.|..+....+|.|+=...+..+.......+.|.-..  .+...+...-+-+|+...-.|.+.   |  ...+.|+.++
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr--~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng  260 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFR--RPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGG  260 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEec--CCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            49999999999999999987765544333334333221  112445555677899999999987   3  2238999998


Q ss_pred             cccC
Q psy12422        117 IKSS  120 (356)
Q Consensus       117 ~~~~  120 (356)
                      ..+.
T Consensus       261 ~~V~  264 (466)
T PHA03270        261 DEVF  264 (466)
T ss_pred             cccc
Confidence            8774

>PHA02982 hypothetical protein; Provisional

Probab=96.91  E-value=0.0031  Score=47.69  Aligned_cols=75  Identities=17%  Similarity=0.352  Sum_probs=53.3

Q ss_pred             CceeecCCCeEEEEEEE-cCCCCCeEEEEECC-EEcc----------C--------CCceeEEEeCCEEEEEEccCCCCC
Q psy12422        197 TDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNG-QPLN----------S--------SNILDLKYKNGVASLQIQEVFPED  256 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g-~~~~----------~--------~~~~~~~~~~~~~~L~i~~v~~~d  256 (356)
                      -++....++++.|.|.. ++.......|+.+. ..+.          .        ...+....++..++|+|++++.+.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            34456679999999996 34445568898743 2221          1        123344566778999999999999


Q ss_pred             CeEEEEEEEcCCCce
Q psy12422        257 EGVYVCTATNSLGTA  271 (356)
Q Consensus       257 ~G~Y~C~a~n~~g~~  271 (356)
                      .|-|+|+|....+..
T Consensus       112 ~GCYtc~~ks~~~k~  126 (251)
T PHA02982        112 LGCFTCEAKDAEGKE  126 (251)
T ss_pred             CCceEEEEecCCCch
Confidence            999999999866543

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.87  E-value=0.13  Score=43.70  Aligned_cols=80  Identities=11%  Similarity=0.115  Sum_probs=51.2

Q ss_pred             eEEEEEeeCCCCCCeEEEEEEEeCCce--eEEEEEEEEeccccchhhhhhcccccccCccceeeeccc---CC--ceeee
Q psy12422         40 VVSMEIIDCKPEDSGEYKCVATNKHGT--DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---PA--PAIIT  112 (356)
Q Consensus        40 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p~--p~i~w  112 (356)
                      ...|.|+++...|+|.|+-...+....  .+....+.+...++   ...+....+-+|+...-.|.+.   |+  ..+.|
T Consensus       206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPP---sVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrW  282 (490)
T PHA03271        206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPA---SVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSW  282 (490)
T ss_pred             eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCC---CccccCCccccCCCceEEEEeeeecCCCceEEEE
Confidence            347999999999999775544443222  23334444444322   2334455567899999999987   32  23899


Q ss_pred             cccccccCCc
Q psy12422        113 TRQEIKSSYS  122 (356)
Q Consensus       113 ~~~~~~~~~~  122 (356)
                      +.++......
T Consensus       283 f~nG~~V~~~  292 (490)
T PHA03271        283 RQNGNIATPR  292 (490)
T ss_pred             EeCCccccCc
Confidence            9997766443

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.83  E-value=0.17  Score=42.66  Aligned_cols=73  Identities=14%  Similarity=0.252  Sum_probs=50.8

Q ss_pred             CceeecCCCeEEEEEEEc--CCC-CCeEEEEECCEEccCC-----------------CceeEE------EeCCEEEEEEc
Q psy12422        197 TDKTIDDGQCLDLSAVVK--GDP-EPRVSWTKNGQPLNSS-----------------NILDLK------YKNGVASLQIQ  250 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~--g~p-~p~i~W~~~g~~~~~~-----------------~~~~~~------~~~~~~~L~i~  250 (356)
                      ....+..|..+.|.|...  |+. ...+.|...|.++.+.                 ..+.+.      .+.-.++|+|+
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            556777899999999984  444 4569998766555421                 111111      12234799999


Q ss_pred             cCCCCCCeEEEEEEEcCCC
Q psy12422        251 EVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       251 ~v~~~d~G~Y~C~a~n~~g  269 (356)
                      +++-+.+|-|.|+|....-
T Consensus       352 ka~I~N~GCY~~~a~~g~~  370 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKF  370 (500)
T ss_pred             eEEEEcCCceEEEEecCcc
Confidence            9999999999999987643

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.80  E-value=0.0046  Score=41.78  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=36.4

Q ss_pred             CCceEEEEEecc-C-CC-CeeEEeeCCEEcccCCeeEEecCCeEEE-EEeeCCCCC--C-eEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGST-K-PP-PTVKWYKGNRELSKRDYSMSYSDGVVSM-EIIDCKPED--S-GEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g-~-p~-~~v~W~k~g~~l~~~~~~~~~~~~~~~L-~i~~~~~~D--~-G~Y~C~a~n~~g   65 (356)
                      ++.++|.|.+.| + |. ..|+|.++|+.-..........++.+++ ....+..+|  . ..|+|.+.+...
T Consensus        19 ~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          19 GSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             CCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            356899999977 4 43 4789999987611111112233443321 112233333  3 459999987643

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.72  E-value=0.0033  Score=49.65  Aligned_cols=49  Identities=24%  Similarity=0.411  Sum_probs=37.3

Q ss_pred             CCCeeEEee-CCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422         14 PPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus        14 p~~~v~W~k-~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      ..|.++|.- +|+.+....+......|  .|.+.+.+..++|.|+|..+-..
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG--~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETG--KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCc--eEEeeccccccCCceEEEEEEEe
Confidence            358899998 56667655444445555  69999999999999999986543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG4597|consensus

Probab=96.71  E-value=0.0025  Score=54.34  Aligned_cols=77  Identities=12%  Similarity=0.055  Sum_probs=57.1

Q ss_pred             CCceEEEEEeccCCCCeeEEee---CCEEcccCCeeE---EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK---GNRELSKRDYSM---SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k---~g~~l~~~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |+++.++|-+.|.|.+.|+|-+   |+..+-......   ..--....|.|-+....|+|-|+|.+.|..|.....+.+.
T Consensus       211 wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~  290 (560)
T KOG4597|consen  211 WETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCS  290 (560)
T ss_pred             chhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceee
Confidence            5788999999999999999977   444332111000   0111234899999999999999999999999988888877


Q ss_pred             Eec
Q psy12422         75 VES   77 (356)
Q Consensus        75 v~~   77 (356)
                      +..
T Consensus       291 s~~  293 (560)
T KOG4597|consen  291 SVK  293 (560)
T ss_pred             eec
Confidence            653

>KOG0613|consensus

Probab=96.67  E-value=0.0027  Score=61.03  Aligned_cols=77  Identities=16%  Similarity=0.081  Sum_probs=59.1

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEccCCCc--eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNI--LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      ..+.++.+..+++.|...+.+.|. +.|+.++........  ...........+.|..+...+.+.|.|.|.|..|....
T Consensus       342 ~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~  421 (1205)
T KOG0613|consen  342 LSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT  421 (1205)
T ss_pred             ceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccc
Confidence            556778888999999999999887 999997766554332  22222233457899999999999999999999996654

>PHA03042 CD47-like protein; Provisional

Probab=96.51  E-value=0.02  Score=45.50  Aligned_cols=70  Identities=17%  Similarity=0.203  Sum_probs=45.1

Q ss_pred             CCceEEEEEeccC-----CCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTK-----PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~-----p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      +++|.+.|.++.-     -.-.+.|..||+.+-..+.    . ...+|++.. ...-.|+|+|+|.+.....+....|.-
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~----t-n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~  104 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN----T-NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQY  104 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC----C-cceEEEEec-cccCCCceeEEEeecccCccEEEEEEE
Confidence            5789999998531     2345899999988743211    1 224677764 344489999999876544455555544


Q ss_pred             e
Q psy12422         76 E   76 (356)
Q Consensus        76 ~   76 (356)
                      .
T Consensus       105 ~  105 (286)
T PHA03042        105 V  105 (286)
T ss_pred             E
Confidence            3

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.46  E-value=0.0045  Score=48.88  Aligned_cols=49  Identities=24%  Similarity=0.514  Sum_probs=39.2

Q ss_pred             CCCeEEEEE-CCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        217 PEPRVSWTK-NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       217 p~p~i~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      ..|.+.|.- +|..++..+.+++...+   .|.+.+...+++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence            468899997 77777776666665443   69999999999999999987655

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.44  E-value=0.0062  Score=40.93  Aligned_cols=41  Identities=29%  Similarity=0.352  Sum_probs=29.7

Q ss_pred             ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEe
Q psy12422         36 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVE   76 (356)
Q Consensus        36 ~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~   76 (356)
                      +....++|.|+.++..|+|.|..++++..|... ..+.+.|.
T Consensus        66 F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   66 FTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             eeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            334445999999999999999999999888763 44665554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03042 CD47-like protein; Provisional

Probab=96.05  E-value=0.054  Score=43.16  Aligned_cols=70  Identities=16%  Similarity=0.249  Sum_probs=47.4

Q ss_pred             cCCCeEEEEEEEcCC-----CCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        202 DDGQCLDLSAVVKGD-----PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~-----p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      .-.+++.+.|.++.-     -.-.++|..++..+-..+..      +.++|.+ +-...-.|+|+|+|.+.....+....
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk~~Ie  101 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKF-NFSKNLSGNYTCEAINKFNKIKNTIE  101 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEE-eccccCCCceeEEEeecccCccEEEE
Confidence            347889999999642     24459999999887543332      1235655 34445589999999987766666555


Q ss_pred             Ee
Q psy12422        277 LT  278 (356)
Q Consensus       277 l~  278 (356)
                      +.
T Consensus       102 Lk  103 (286)
T PHA03042        102 LQ  103 (286)
T ss_pred             EE
Confidence            54

>PHA03283 envelope glycoprotein E; Provisional

Probab=95.84  E-value=0.18  Score=44.30  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=31.9

Q ss_pred             EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422         41 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus        41 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      ..|+|.+++.+++|.|+--.+++.+...+.+.|.|..
T Consensus       134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~  170 (542)
T PHA03283        134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK  170 (542)
T ss_pred             CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence            4799999999999999999998877666777778876

>PHA03282 envelope glycoprotein E; Provisional

Probab=95.59  E-value=0.67  Score=40.23  Aligned_cols=38  Identities=24%  Similarity=0.359  Sum_probs=28.8

Q ss_pred             eeEEeCCeEEEEEecCCCCCCeEEEEEEE-cCCcceEEE
Q psy12422        287 DLKYKNGVASLQIQEVFPEDEGVYVCTAT-NSLGTAETK  324 (356)
Q Consensus       287 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-n~~g~~~~~  324 (356)
                      .+.|..++-.|.+.++..+++|-|.|++. |..-.+...
T Consensus       325 gL~~~~n~VdL~F~nAp~saSGLYVfVl~yNGHVeAW~Y  363 (540)
T PHA03282        325 GLGWYGHTVNLQLRDASEASGGLYVCVVYVNGHVHAWGH  363 (540)
T ss_pred             cccccCCccceEecCCCcccCceEEEEEEECCeeeeeEE
Confidence            35666677799999999999999999976 444444443

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.13  E-value=0.22  Score=32.20  Aligned_cols=51  Identities=20%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             CeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE-EeCCceeEEEEEEEE
Q psy12422         16 PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA-TNKHGTDETNCVVIV   75 (356)
Q Consensus        16 ~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a-~n~~g~~~~~~~l~v   75 (356)
                      +.+.|+-.+..+...+       .  .+.+.....+|+|.+.|.| .+..-.......+.|
T Consensus        27 ~~~~l~~~~~k~~~~~-------~--~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   27 PSLFLENPGKKSLETK-------K--LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEEECSSCEEEEES-------S--EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             hhheeeccCccccccc-------e--EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            4567766554332111       1  4556667889999999999 665555555555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>TIGR00864 PCC polycystin cation channel protein

Probab=94.96  E-value=6.9  Score=42.66  Aligned_cols=127  Identities=14%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEE--EEEcCCCceEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC--TATNSLGTAETK  274 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~~~~~  274 (356)
                      +...+..|+.++|.-...+-....++|..++..-........            .-+-...|.|..  .|.|..|+...+
T Consensus      1705 S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~------------tHtf~~~G~y~VtVta~N~vss~~~s 1772 (2740)
T TIGR00864      1705 SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM------------SHSFPSAGLHLVTMKAFNELGSANAS 1772 (2740)
T ss_pred             cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce------------EEEccCCceEEEEEEEEcccccccee
Confidence            445567799999987777777888999975532211111100            011233566644  577888877766


Q ss_pred             EEEec---CCCCccc----------------------------eeEEeC-CeEEEEEec--CCCCCCeEEEE--EEEcCC
Q psy12422        275 CKLTP---LNSSNIL----------------------------DLKYKN-GVASLQIQE--VFPEDEGVYVC--TATNSL  318 (356)
Q Consensus       275 ~~l~p---~~~~~~~----------------------------~~~~~~-~~~~L~i~~--v~~~d~G~Y~C--~a~n~~  318 (356)
                      ..+.+   .....+.                            .|.|.- +.....=+.  .+..+.|.|+-  .|+|.+
T Consensus      1773 ~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~v~~Tf~~aG~ytV~L~AsN~v 1852 (2740)
T TIGR00864      1773 EEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKHACMTFPDAGTFAIRLNASNAV 1852 (2740)
T ss_pred             EEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccceeEEecCCCeEEEEEEEEEccc
Confidence            55552   1111110                            333421 111222233  44678999987  589999


Q ss_pred             cceEEEEEEEEEecCCC
Q psy12422        319 GTAETKCKLTVRSTPAA  335 (356)
Q Consensus       319 g~~~~~~~l~V~~~p~~  335 (356)
                      +....+..+.|+.+..-
T Consensus      1853 s~~~~s~~~~VQe~I~~ 1869 (2740)
T TIGR00864      1853 SGKSASREFFAEEPIFG 1869 (2740)
T ss_pred             CcceeeeeEEEEEecce
Confidence            99999999999998753

Note: this model has been restricted to the amino half because for technical reasons.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.83  E-value=0.091  Score=35.50  Aligned_cols=43  Identities=26%  Similarity=0.456  Sum_probs=32.8

Q ss_pred             eeEEeCCeEEEEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEE
Q psy12422        287 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTV  329 (356)
Q Consensus       287 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V  329 (356)
                      ++.+...+-.|.|+.++.+|+|.|.-++.|..|.... .|.+.|
T Consensus        63 r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   63 RFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             HEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             eEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            4555666789999999999999999999999887644 666555

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03271 envelope glycoprotein C; Provisional

Probab=94.55  E-value=1.3  Score=37.89  Aligned_cols=115  Identities=11%  Similarity=0.119  Sum_probs=56.8

Q ss_pred             CCceEEEEEecc-CCCC--eeEEeeCCEEcccCC---eeE-Ee--cCC---eEEEEEeeCCCCCCeEEEEEEEeCCceeE
Q psy12422          1 MQNVIKVKVGST-KPPP--TVKWYKGNRELSKRD---YSM-SY--SDG---VVSMEIIDCKPEDSGEYKCVATNKHGTDE   68 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~--~v~W~k~g~~l~~~~---~~~-~~--~~~---~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~   68 (356)
                      ||+..-.|.+.. +|+-  .++||+||.++...+   ... ..  .++   .++|++.+...+..=..+|.+.-......
T Consensus       260 Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~  339 (490)
T PHA03271        260 GENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMI  339 (490)
T ss_pred             CCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCce
Confidence            788899999954 4543  589999999886432   111 11  111   12333333322233489999875544222


Q ss_pred             EEEEEEEeccccchhhhhhcccccccCccceeeecccC-Cceeeeccccccc
Q psy12422         69 TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRP-APAIITTRQEIKS  119 (356)
Q Consensus        69 ~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p-~p~i~w~~~~~~~  119 (356)
                      .+..-.+.  +.  .-......+.+++....|....-| .-.+.|+-.+...
T Consensus       340 s~rnAaat--P~--VY~~P~ISv~FedG~AVCtA~CVP~gV~lrWlVgD~p~  387 (490)
T PHA03271        340 STTNATAI--PT--VYHHPRISLAFKDGYAICTIECVPSGITVRWLVHDEPQ  387 (490)
T ss_pred             eeeecccC--Cc--cccCCeEEEEEeCCEEEEeccccCCCcEEEEEecCCCC
Confidence            22211111  00  000111223455555555433223 4458898765543

>PHA03269 envelope glycoprotein C; Provisional

Probab=94.16  E-value=1.7  Score=38.17  Aligned_cols=29  Identities=21%  Similarity=0.233  Sum_probs=23.0

Q ss_pred             CCceEEEEEecc-CCCC--eeEEeeCCEEccc
Q psy12422          1 MQNVIKVKVGST-KPPP--TVKWYKGNRELSK   29 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~--~v~W~k~g~~l~~   29 (356)
                      ||+..-.|.+.. +|+-  .++||+||.++..
T Consensus       342 Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~  373 (566)
T PHA03269        342 GNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK  373 (566)
T ss_pred             CCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence            788889999954 4543  5899999999874

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=94.07  E-value=0.73  Score=30.55  Aligned_cols=65  Identities=18%  Similarity=0.403  Sum_probs=43.3

Q ss_pred             ceeecCCCeEEEEEEEcCC-----CCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGD-----PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~-----p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ...+..|+.++..|...-.     ....|.|..|+..++...  ......+.+.+++.+......-.|-|..
T Consensus        12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~q--y~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQ--YRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGC--EEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhH--cceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            3468899999999999422     345699999998776543  2334455578888888777777777763

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=93.89  E-value=0.42  Score=31.70  Aligned_cols=59  Identities=17%  Similarity=0.284  Sum_probs=40.6

Q ss_pred             CCceEEEEEec-c----CCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGS-T----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~-g----~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |.+|+..|... +    .....|.|..|+..++.+++.. ..++.+++++.+.....+-.|-|..
T Consensus        18 GS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~-in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   18 GSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRV-INDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             TS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEE-ESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcce-eCCeEEEEEEccCCCCCceEEEEEE
Confidence            78999999983 2    2455799999999888777644 5555578888877666666777764

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>KOG0613|consensus

Probab=92.85  E-value=0.35  Score=47.39  Aligned_cols=130  Identities=13%  Similarity=0.031  Sum_probs=88.0

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ..-...++....|.|.+.+.+.+.+.|..++......       ..+..++.|.+....+.+.|+|...+..+.....+.
T Consensus       237 ~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~  309 (1205)
T KOG0613|consen  237 SMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVT  309 (1205)
T ss_pred             ccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccceeee
Confidence            3344567788899999999999998888765443322       122236778888888889999999998887776655


Q ss_pred             EecCCC--------------------Cccc--------------------------eeEEe-------------------
Q psy12422        277 LTPLNS--------------------SNIL--------------------------DLKYK-------------------  291 (356)
Q Consensus       277 l~p~~~--------------------~~~~--------------------------~~~~~-------------------  291 (356)
                      ..+...                    ....                          ...+.                   
T Consensus       310 ~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  389 (1205)
T KOG0613|consen  310 EEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGT  389 (1205)
T ss_pred             EEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeeccccccccccccccccccc
Confidence            541100                    0000                          01111                   


Q ss_pred             CCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecC
Q psy12422        292 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP  333 (356)
Q Consensus       292 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  333 (356)
                      .....+.|..+...+.+.|.|.|.|..|.........|...+
T Consensus       390 ~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~  431 (1205)
T KOG0613|consen  390 VTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEM  431 (1205)
T ss_pred             ccCcchhhhhcCcccccccccceeccCCcccccchhhccccc
Confidence            133678999999999999999999999977665555555543

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=92.61  E-value=0.48  Score=39.75  Aligned_cols=21  Identities=10%  Similarity=0.167  Sum_probs=16.9

Q ss_pred             eEEEEEEEcCCCCC--eEEEEEC
Q psy12422        206 CLDLSAVVKGDPEP--RVSWTKN  226 (356)
Q Consensus       206 ~~~l~C~~~g~p~p--~i~W~~~  226 (356)
                      .++|.|.|.|+-|.  .+.|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999885443  4889999

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=92.38  E-value=0.55  Score=39.40  Aligned_cols=62  Identities=19%  Similarity=0.279  Sum_probs=35.9

Q ss_pred             ceEEEEEeccC-CC-CeeEEeeC---------C---EEcccCC----------e-eEEecC-CeEEEEEe-eCCCCCCeE
Q psy12422          3 NVIKVKVGSTK-PP-PTVKWYKG---------N---RELSKRD----------Y-SMSYSD-GVVSMEII-DCKPEDSGE   55 (356)
Q Consensus         3 ~v~l~C~~~g~-p~-~~v~W~k~---------g---~~l~~~~----------~-~~~~~~-~~~~L~i~-~~~~~D~G~   55 (356)
                      .++|+|.|.|. |. ..+.|.||         |   ..+..+.          . ..-..+ +.+.++.. .+...|...
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~v~~~~~~~  295 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVRVPTDMSNQ  295 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEEeCCCCCCC
Confidence            47899999885 44 36899999         4   2221111          0 111234 35443322 344567778


Q ss_pred             EEEEEEeCC
Q psy12422         56 YKCVATNKH   64 (356)
Q Consensus        56 Y~C~a~n~~   64 (356)
                      |+|.+....
T Consensus       296 Y~C~V~Hsg  304 (338)
T PHA02865        296 IVCVVFHST  304 (338)
T ss_pred             cEEEEEeCC
Confidence            999997753

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=92.20  E-value=0.94  Score=30.05  Aligned_cols=67  Identities=12%  Similarity=0.342  Sum_probs=40.5

Q ss_pred             eEEEEEe-ccCCCCeeEEee--CCEEcccCCeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422          4 VIKVKVG-STKPPPTVKWYK--GNRELSKRDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV   73 (356)
Q Consensus         4 v~l~C~~-~g~p~~~v~W~k--~g~~l~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   73 (356)
                      +.-.|.+ .|.|++.|+|.-  +|.. .  .......+|.    +.+.+.+.+..|.-.-+|.+....-.....+.|
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e--tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L   96 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEA-E--FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL   96 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCce-e--eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence            4458995 899999999985  2332 1  0112223332    245566777888889999997753333333333

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA03270 envelope glycoprotein C; Provisional

Probab=92.09  E-value=1.2  Score=38.35  Aligned_cols=80  Identities=13%  Similarity=0.225  Sum_probs=47.1

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcC-CCCC--eEEEEECCEEccCCCceeE---EEeCC---EEEEEEccCCCCC-
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEP--RVSWTKNGQPLNSSNILDL---KYKNG---VASLQIQEVFPED-  256 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p--~i~W~~~g~~~~~~~~~~~---~~~~~---~~~L~i~~v~~~d-  256 (356)
                      +.+|.+.+.+.  .+.+|+...-.|.+.. +|+-  .++||+||.++........   ...++   .++|++.....+. 
T Consensus       219 yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~  296 (466)
T PHA03270        219 FRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAP  296 (466)
T ss_pred             ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCC
Confidence            56676665543  4788999999999965 4532  4999999998854322221   11122   2344444333222 


Q ss_pred             CeEEEEEEEcCC
Q psy12422        257 EGVYVCTATNSL  268 (356)
Q Consensus       257 ~G~Y~C~a~n~~  268 (356)
                      --..+|.+.=..
T Consensus       297 PPsLrC~v~W~r  308 (466)
T PHA03270        297 PRNLTCEFTWHR  308 (466)
T ss_pred             CCCceEEEEEcc
Confidence            237899885433

>PHA03052 Hypothetical protein; Provisional

Probab=91.24  E-value=0.78  Score=28.04  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=27.0

Q ss_pred             CceeecCCCeEEEEEEEc-CCC--CCeEEEEECCEEcc
Q psy12422        197 TDKTIDDGQCLDLSAVVK-GDP--EPRVSWTKNGQPLN  231 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~-g~p--~p~i~W~~~g~~~~  231 (356)
                      ..+.+..|..++|.|.+. |.|  .+.+.|.-|+..+.
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            456788899999999993 333  45688999998874

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=91.08  E-value=0.11  Score=45.86  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=0.0

Q ss_pred             EEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEec
Q psy12422         42 SMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVES   77 (356)
Q Consensus        42 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~   77 (356)
                      .|.|.+++.+|+|.|+-...+..+... ..+.|.|..
T Consensus        90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~  126 (439)
T PF02480_consen   90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG  126 (439)
T ss_dssp             -------------------------------------
T ss_pred             ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence            699999999999999999987765543 335566654

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>TIGR00864 PCC polycystin cation channel protein

Probab=91.07  E-value=28  Score=38.44  Aligned_cols=67  Identities=13%  Similarity=0.085  Sum_probs=46.9

Q ss_pred             CCCCCeEEEEE--EEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccc
Q psy12422         49 KPEDSGEYKCV--ATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQE  116 (356)
Q Consensus        49 ~~~D~G~Y~C~--a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~  116 (356)
                      +..++|.|+-.  |.|..+....+..+.|.++...... ......+..|+.++|.+...+.+.+.+.++.
T Consensus      1835 Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L-~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~f 1903 (2740)
T TIGR00864      1835 TFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLEL-KASKKIAAIGEKVEFQILLAAGSAVNFRLQI 1903 (2740)
T ss_pred             ecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEE-ecccccccCCCEEEEEEEecCCCceEEEEEe
Confidence            56789999875  6788888888888888776433322 2334467789999999988866665544433

Note: this model has been restricted to the amino half because for technical reasons.

>KOG1026|consensus

Probab=90.82  E-value=0.89  Score=42.70  Aligned_cols=67  Identities=13%  Similarity=0.208  Sum_probs=43.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |..+++.|.+.+.|-|.+.|+.++............-... ...+.+        +.|.+.|..|.....+.+.+.
T Consensus       207 ~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~-~~~~~~--------~~c~~E~~~~~~~~~v~~~~~  273 (774)
T KOG1026|consen  207 GSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSE-CEVLEN--------DLCIAENAVARSNPSILLVVD  273 (774)
T ss_pred             cchheeeeecccCCCcceeeecccccccCCCccccccccc-ceeeec--------hhhHHHHhhhhcCceeeeEEe
Confidence            4578999999999999999999877665432111111111 111111        899999988877666665554

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.37  E-value=3.4  Score=26.77  Aligned_cols=32  Identities=31%  Similarity=0.447  Sum_probs=22.8

Q ss_pred             EEEEccCCCCCCeEEEEEE-EcCCCceEEEEEE
Q psy12422        246 SLQIQEVFPEDEGVYVCTA-TNSLGTAETKCKL  277 (356)
Q Consensus       246 ~L~i~~v~~~d~G~Y~C~a-~n~~g~~~~~~~l  277 (356)
                      .+........|+|.+.|.| .+..-.......+
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i   76 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEI   76 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEE
Confidence            4567788889999999999 5555544444444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03273 envelope glycoprotein C; Provisional

Probab=90.17  E-value=3.5  Score=36.03  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=48.4

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCC-CC--CeEEEEECCEEccC-CCcee-E--EEeCC---EEEEEEccCCC-C
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PE--PRVSWTKNGQPLNS-SNILD-L--KYKNG---VASLQIQEVFP-E  255 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~--p~i~W~~~g~~~~~-~~~~~-~--~~~~~---~~~L~i~~v~~-~  255 (356)
                      +.+|.+.+.+.  .+.+|+...-.|.+..+ |+  ..++||+||.++.. ..... .  ..++.   .++|++..... +
T Consensus       235 yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~  312 (486)
T PHA03273        235 YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEE  312 (486)
T ss_pred             ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCC
Confidence            55666655443  47899999999999654 53  24999999998873 22111 1  11122   24565555433 3


Q ss_pred             CCeEEEEEEEcC
Q psy12422        256 DEGVYVCTATNS  267 (356)
Q Consensus       256 d~G~Y~C~a~n~  267 (356)
                      ..-..+|.+.=.
T Consensus       313 ~PP~lrC~v~W~  324 (486)
T PHA03273        313 YTPSLRCSIEWY  324 (486)
T ss_pred             CCCCceEEEEEc
Confidence            345789987533

>KOG1026|consensus

Probab=89.62  E-value=0.096  Score=48.75  Aligned_cols=125  Identities=18%  Similarity=0.233  Sum_probs=73.8

Q ss_pred             eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ..+..|..+++.|.+.+.|.|.+.|+.++............-.  .....+.+        +.|.+.|..|....++.+.
T Consensus       202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~~--------~~c~~E~~~~~~~~~v~~~  271 (774)
T KOG1026|consen  202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--SECEVLEN--------DLCIAENAVARSNPSILLV  271 (774)
T ss_pred             hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--ccceeeec--------hhhHHHHhhhhcCceeeeE
Confidence            4577899999999999999999999987765544321110000  01112221        7888888888766544444


Q ss_pred             cC-------------------------CCCccc-------eeEEeC------Ce--EEEEEecCCCCCCeEEEEEEEcCC
Q psy12422        279 PL-------------------------NSSNIL-------DLKYKN------GV--ASLQIQEVFPEDEGVYVCTATNSL  318 (356)
Q Consensus       279 p~-------------------------~~~~~~-------~~~~~~------~~--~~L~i~~v~~~d~G~Y~C~a~n~~  318 (356)
                      ..                         ++....       ..++.+      ..  .-+....-...+.|.|+|++.|..
T Consensus       272 ~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~~  351 (774)
T KOG1026|consen  272 VDLPKAEVLLCSPLSDHHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFPELPG  351 (774)
T ss_pred             EecccccccCCCCccccCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcceeeecccC
Confidence            10                         000000       111111      00  223333335667899999999999


Q ss_pred             cceEEEEEEEEEecC
Q psy12422        319 GTAETKCKLTVRSTP  333 (356)
Q Consensus       319 g~~~~~~~l~V~~~p  333 (356)
                      |.........++..|
T Consensus       352 g~~~~r~~g~~~~~P  366 (774)
T KOG1026|consen  352 GKNYCRNPGGFMSRP  366 (774)
T ss_pred             ccccccCcCccccCC
Confidence            887776666666666

>PHA03281 envelope glycoprotein E; Provisional

Probab=89.30  E-value=4.9  Score=35.90  Aligned_cols=37  Identities=11%  Similarity=0.241  Sum_probs=28.8

Q ss_pred             EEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEEEecc
Q psy12422         42 SMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVESE   78 (356)
Q Consensus        42 ~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~v~~~   78 (356)
                      .|+|.+++..++|.|+--.+...|.. .+.+.|.|.+.
T Consensus       299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~  336 (642)
T PHA03281        299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGD  336 (642)
T ss_pred             eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCC
Confidence            79999999999999999888666644 34666777653

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=89.02  E-value=3.1  Score=27.58  Aligned_cols=54  Identities=15%  Similarity=0.244  Sum_probs=34.1

Q ss_pred             EEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422          5 IKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         5 ~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      .|.+.+.+. .+.+.||-||+.+.....     ..  .+.+   .....|.|+..+.+..|...+
T Consensus        33 ~l~l~a~~~-~~~~~W~vdg~~~g~~~~-----~~--~~~~---~~~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   33 PLVLKAAGG-RGPVYWFVDGEPLGTTQP-----GH--QLFW---QPDRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             eEEEEEeCC-CCcEEEEECCEEcccCCC-----CC--eEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence            445555444 448999999999943211     11  2322   345679999998888777644

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function

Probab=88.03  E-value=4.6  Score=25.02  Aligned_cols=57  Identities=16%  Similarity=0.327  Sum_probs=36.3

Q ss_pred             eeEEeeCCEEcccCCeeEEecCCeE-EEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422         17 TVKWYKGNRELSKRDYSMSYSDGVV-SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus        17 ~v~W~k~g~~l~~~~~~~~~~~~~~-~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      ...||++|+.+..-...+.  ++.. +-.-+.....+.|.++..+....|..-......|
T Consensus         8 ~H~W~~~g~~~~~i~l~i~--g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V   65 (66)
T PF11141_consen    8 YHRWYKNGKLVARIPLPIS--GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV   65 (66)
T ss_pred             EEEEEECCEEEEEEEEecc--CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence            4689999998764322222  2211 2223334457899999999988888766655544

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=87.86  E-value=12  Score=29.45  Aligned_cols=60  Identities=13%  Similarity=0.286  Sum_probs=32.4

Q ss_pred             EEEEEEcCCCC--CeEEEEECCEEccCCCceeEEE--eCCEEEEEEccCCCC--CCe--EEEEEEEcC
Q psy12422        208 DLSAVVKGDPE--PRVSWTKNGQPLNSSNILDLKY--KNGVASLQIQEVFPE--DEG--VYVCTATNS  267 (356)
Q Consensus       208 ~l~C~~~g~p~--p~i~W~~~g~~~~~~~~~~~~~--~~~~~~L~i~~v~~~--d~G--~Y~C~a~n~  267 (356)
                      ..-|.+.--|.  ..+.|+-++.............  .+.-....|++....  ..|  .|+|.+...
T Consensus        93 ~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~GY  160 (211)
T PF02124_consen   93 YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIGY  160 (211)
T ss_pred             EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEeeC
Confidence            44688877774  4699998776542222111110  011124555554443  345  899988654

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03286 envelope glycoprotein E; Provisional

Probab=85.65  E-value=14  Score=32.48  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             EEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       245 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ..|+|.+++...+|.|+-...|..|....++.+.
T Consensus       127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflV  160 (492)
T PHA03286        127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVV  160 (492)
T ss_pred             CceEEeeccccccceEEEEEcCCCCcEEEEEEEE
Confidence            4799999999999999999998877665555444

>COG5475 Uncharacterized small protein [Function unknown]

Probab=85.07  E-value=2.6  Score=24.52  Aligned_cols=36  Identities=17%  Similarity=0.373  Sum_probs=25.1

Q ss_pred             EEeCCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy12422        289 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  326 (356)
Q Consensus       289 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  326 (356)
                      +.+.+....++...+.  .|.|.|...+..|.....|.
T Consensus        12 ~lKsGGP~Mtvs~~ss--~Gmy~C~Wf~g~g~~~~~F~   47 (60)
T COG5475          12 TLKSGGPRMTVSGYSS--DGMYECRWFDGYGVKREAFH   47 (60)
T ss_pred             EeecCCceEEEecccc--CCeEEEEEecCCCccccccc
Confidence            3444556677766654  39999999999996655443

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=84.70  E-value=4.7  Score=26.88  Aligned_cols=60  Identities=13%  Similarity=0.228  Sum_probs=36.7

Q ss_pred             EEEEEEE-cCCCCCeEEEEE--CCEEccCCCceeEEEeCC---EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        207 LDLSAVV-KGDPEPRVSWTK--NGQPLNSSNILDLKYKNG---VASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       207 ~~l~C~~-~g~p~p~i~W~~--~g~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      +.-.|.+ .|.|++.|+|.-  +|.. ...  .....++.   .+.+.+-.....|.-..+|.+.....
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-etq--~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~   88 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEA-EFQ--EIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND   88 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCce-eee--eeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence            5568985 999999999975  2321 000  00000111   24566667777788899999987643

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA03283 envelope glycoprotein E; Provisional

Probab=84.59  E-value=4.9  Score=35.82  Aligned_cols=46  Identities=24%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCC
Q psy12422        293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLG  338 (356)
Q Consensus       293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~  338 (356)
                      ..+.|.|.+++.+++|.|+=-.+|..+.....+.|+|+.++.-+..
T Consensus       132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~  177 (542)
T PHA03283        132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQT  177 (542)
T ss_pred             CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCC
Confidence            4578999999999999999999998776666888999886554433

>PHA03112 IL-18 binding protein; Provisional

Probab=84.45  E-value=2.2  Score=30.73  Aligned_cols=74  Identities=14%  Similarity=0.071  Sum_probs=44.3

Q ss_pred             ecCCCeEEEEEEEcCC-CC-CeEEEEECCE-Ecc-------------CCCceeEEEeCCEEEEEEccCCCC-CCeEEEEE
Q psy12422        201 IDDGQCLDLSAVVKGD-PE-PRVSWTKNGQ-PLN-------------SSNILDLKYKNGVASLQIQEVFPE-DEGVYVCT  263 (356)
Q Consensus       201 v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~-~~~-------------~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~  263 (356)
                      ..+++++.|+|.+-++ |. ..+-|..++. ...             ...........-...|.+.+++.+ ..-.++|+
T Consensus        35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV  114 (141)
T PHA03112         35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV  114 (141)
T ss_pred             cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence            4569999999999655 65 4488997542 211             111111111122356787888865 44489998


Q ss_pred             EEcCCCceEEE
Q psy12422        264 ATNSLGTAETK  274 (356)
Q Consensus       264 a~n~~g~~~~~  274 (356)
                      .....+..+.+
T Consensus       115 L~D~~~~~k~~  125 (141)
T PHA03112        115 LMDLDGPIKKS  125 (141)
T ss_pred             EecCCchhhHH
Confidence            88776655443

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=81.26  E-value=13  Score=24.54  Aligned_cols=56  Identities=21%  Similarity=0.306  Sum_probs=35.2

Q ss_pred             eEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       206 ~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      ...|.+.+.+. .+.+.|+.||..+......        ..+.+   .....|.|+-.+.+..|....
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~---~~~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLFW---QPDRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence            45666666555 4499999999998332211        12222   224578888888888776543

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03112 IL-18 binding protein; Provisional

Probab=81.09  E-value=9.8  Score=27.54  Aligned_cols=66  Identities=18%  Similarity=0.326  Sum_probs=36.4

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCC-EEcccC----Ce--------eEE--ecCCeEEEEEeeCCCC-CCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGN-RELSKR----DY--------SMS--YSDGVVSMEIIDCKPE-DSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g-~~l~~~----~~--------~~~--~~~~~~~L~i~~~~~~-D~G~Y~C~a~n   62 (356)
                      |+++.|+|.+-++ |. ..+.|.+++ +.+...    .+        ...  ...-+..|++.+++.+ +.-.++|+...
T Consensus        38 ~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL~D  117 (141)
T PHA03112         38 TEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVLMD  117 (141)
T ss_pred             CCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEEec
Confidence            6889999999655 55 357999754 322110    00        000  1122346666776643 33378887765


Q ss_pred             CCce
Q psy12422         63 KHGT   66 (356)
Q Consensus        63 ~~g~   66 (356)
                      ..+.
T Consensus       118 ~~~~  121 (141)
T PHA03112        118 LDGP  121 (141)
T ss_pred             CCch
Confidence            5443

>PHA03282 envelope glycoprotein E; Provisional

Probab=81.00  E-value=5.2  Score=35.08  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             eEEEEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEEEEecC
Q psy12422        294 VASLQIQEVFPEDEGVYVCTATNSLGT--AETKCKLTVRSTP  333 (356)
Q Consensus       294 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~p  333 (356)
                      +.+|.|.+++.+|+|.|+-.+...-..  +.+.+.|.|...+
T Consensus       123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~~  164 (540)
T PHA03282        123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGPRP  164 (540)
T ss_pred             cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecCCC
Confidence            567999999999999999986443222  3445666666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		7e-13
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		7e-12
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		1e-10
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		1e-09
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		1e-10
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		1e-09
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-10
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		1e-09
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-09
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-09
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-09
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		4e-09
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-09
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		6e-09
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		3e-08
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		3e-08
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		5e-08
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		6e-08
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		6e-08
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-07
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		1e-07
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-07
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		2e-07
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		6e-04
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-07
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		5e-07
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		7e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		7e-07
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-07
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		1e-06
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-06
2wwk_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		3e-06
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		3e-06
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		6e-06
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		7e-06
2wp3_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		1e-05
3knb_B	107	Crystal Structure Of The Titin C-Terminus In Comple		1e-05
2r15_A	212	Crystal Structure Of The Myomesin Domains 12 And 13		1e-05
3qp3_A	103	Crystal Structure Of Titin Domain M4, Tetragonal Fo		2e-05
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		4e-05
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		5e-05
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		7e-05
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		8e-05
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		1e-04
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		1e-04
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		1e-04
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		1e-04
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		1e-04
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		1e-04
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		2e-04
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		2e-04
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		2e-04
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		2e-04
2bk8_A	97	M1 Domain From Titin Length = 97		3e-04
3kld_A	384	Ptprg Cntn4 Complex Length = 384		4e-04
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		5e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		5e-04
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		5e-04
1wwc_A	118	Nt3 Binding Domain Of Human Trkc Receptor Length =		9e-04

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 79/190 (41%), Gaps = 46/190 (24%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
           AM PP F   L       G+ + L   V G PE R++W K    L S+    +++KN VA
Sbjct: 2   AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKC-------KLTP------------------- 279
           SL I +V   D G Y C A NS+G   +         KL P                   
Sbjct: 62  SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121
Query: 280 ---LNSSNILDLK-YKNG----------------VASLQIQEVFPEDEGVYVCTATNSLG 319
              +N S  L +  YK+G                VA+LQI +      G Y C+A+N LG
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 320 TAETKCKLTV 329
           TA +  KLT+
Sbjct: 182 TASSSAKLTL 191

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
           P F++ L D  + +GQ   L   V+G P PR++W  NGQP+  +       + GVA L I
Sbjct: 12  PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAELHI 68
Query: 250 QEVFPEDEGVYVCTATNSLG 269
           Q+  PED G Y C A N+LG
Sbjct: 69  QDALPEDHGTYTCLAENALG 88

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 178 ELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD 237
           EL++  +TA  PP F  +L   T+  G  + L   V G P P V + ++G  + SS    
Sbjct: 94  ELLVKAETA--PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ 151
Query: 238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
           +  +  + SL I E +PED G Y   ATNS+G A +  +L
Sbjct: 152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 48/189 (25%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI--LDLKYKNGVASL 247
           P F   L    + +G      A + G P P VSW ++GQ +++S +  + + + +G A L
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKL------------------------------ 277
            I  V   + G Y   ATN  G A +  +L                              
Sbjct: 66  TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 278 ------TP----------LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 321
                 TP          + SS    +  +  + SL I E +PED G Y   ATNS+G A
Sbjct: 126 RVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA 185
Query: 322 ETKCKLTVR 330
            +  +L V+
Sbjct: 186 TSTAELLVQ 194

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 178 ELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD 237
           EL++  +TA  PP F  +L   T+  G  + L   V G P P V + ++G  + SS    
Sbjct: 94  ELLVKAETA--PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ 151
Query: 238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
           +  +  + SL I E +PED G Y   ATNS+G A +  +L
Sbjct: 152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 48/189 (25%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI--LDLKYKNGVASL 247
           P F   L    + +G      A + G P P VSW ++GQ +++S +  + + + +G A L
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKL------------------------------ 277
            I  V   + G Y   ATN  G A +  +L                              
Sbjct: 66  TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 278 ------TP----------LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 321
                 TP          + SS    +  +  + SL I E +PED G Y   ATNS+G A
Sbjct: 126 RVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA 185
Query: 322 ETKCKLTVR 330
            +  +L V+
Sbjct: 186 TSTAELLVQ 194

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 56/205 (27%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
           +T  TPP+F     D+T   G          GDP P++ W K G+ +++     +++ +G
Sbjct: 1   ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60
Query: 244 VAS-LQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI---------------- 285
             S L+IQ +  P DE +Y C A+N++G      +LT L    I                
Sbjct: 61  SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120
Query: 286 ----------------------------LDLKYKNG---------VASLQIQEVFPEDEG 308
                                       +D    NG         + +LQI++    D+G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQG 180
Query: 309 VYVCTATNSLGTAETK-CKLTVRST 332
            Y C ATNS GT  +    L VR T
Sbjct: 181 KYECVATNSAGTRYSAPANLYVRGT 205

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 83/220 (37%), Gaps = 64/220 (29%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KN 242
           +T   PP+F  +  D+    G          GDP+PRV+W K G+ +NS     +++ ++
Sbjct: 1   ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 243 GVASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI---------------- 285
             A L+IQ +  P DE VY C A NS+G      KLT L    +                
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 286 ----------------------------LDLKYKNG------VASLQIQEVFPEDEGVYV 311
                                       +D    NG        +LQI+     D+G Y 
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 312 CTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRF 351
           C ATNS G         VR +  ANL     +  + APRF
Sbjct: 181 CVATNSAG---------VRYSSPANLY---VRVQNVAPRF 208

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KN 242
           +T   PP+F  +  D+    G          GDP+PRV+W K G+ +NS     +++ ++
Sbjct: 1   ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 243 GVASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI 285
             A L+IQ +  P DE VY C A NS+G      KLT L    +
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL 104

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KN 242
           +T   PP+F  +  D+    G          GDP+PRV+W K G+ +NS     +++ ++
Sbjct: 1   ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 243 GVASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI 285
             A L+IQ +  P DE VY C A NS+G      KLT L    +
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQL 104

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 73/189 (38%), Gaps = 52/189 (27%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
           +T  + P F     D+T   G          G+P+PR++W K G+ ++S     +++ +G
Sbjct: 1   ETGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDG 60
Query: 244 VAS-LQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI---------------- 285
             S L+IQ +    DE +Y CTATNSLG   T  KL+ L    +                
Sbjct: 61  AGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVV 120
Query: 286 ----------------------------LDLKYKNG------VASLQIQEVFPEDEGVYV 311
                                       +D    NG        +LQI+     D+G Y 
Sbjct: 121 EKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYE 180
Query: 312 CTATNSLGT 320
           C ATNS GT
Sbjct: 181 CVATNSAGT 189

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 70/183 (38%), Gaps = 52/183 (28%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS-LQ 248
           P F     D+T   G          G+P+PR++W K G+ ++S     +++ +G  S L+
Sbjct: 8   PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 249 IQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI---------------------- 285
           IQ +    DE +Y CTATNSLG   T  KL+ L    +                      
Sbjct: 68  IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTA 127
Query: 286 ----------------------LDLKYKNG------VASLQIQEVFPEDEGVYVCTATNS 317
                                 +D    NG        +LQI+     D+G Y C ATNS
Sbjct: 128 TMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNS 187
Query: 318 LGT 320
            GT
Sbjct: 188 AGT 190

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KN 242
           +T  +PP F  K  D+    G          GDP+PRV+W K G+ +NS     +++ ++
Sbjct: 1   ETGESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 243 GVASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI 285
             A L+IQ +  P DE +Y C A N  G      KLT L    +
Sbjct: 61  AGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQL 104

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
           P + + +TD   D G  L  S V  G P P V W ++GQPL S N +++        L+ 
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRF 350
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            ++  ED G+Y C A N  GT     +LT
Sbjct: 351 SKLVLEDSGMYQCVAENKHGTVYASAELT 379

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN-SSNILDLKYKNGVASL 247
           PP F   L D+++ +GQ + +S  V+G+P+P VSW +N QP+         + + G+  L
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
           +I      D G Y C A N  G  + + +L
Sbjct: 65  RILAAERGDAGFYTCKAVNEYGARQCEARL 94

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
           A++ PQ   K  + T + G+ +  S    G PEP +SW +NG+ +  +    LK  N   
Sbjct: 4   AISMPQ---KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--T 58
Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK----YKNGVASL 297
            L ++ +   D G YVC ATN  G  E +  L      +I+ LK    Y+NG  +L
Sbjct: 59  ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTL 114

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KNGVASLQ 248
           P F   + D  + +G        V+G P+P V W K+  P+  S    + Y + G  SL 
Sbjct: 42  PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKL 277
           I EV  +D+  Y C A NSLG A    +L
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAEL 130

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KNGVASLQ 248
           P F   + D  + +G        V+G P+P V W K+  P+  S    + Y + G  SL 
Sbjct: 42  PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKL 277
           I EV  +D+  Y C A NSLG A    +L
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAEL 130

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 38/89 (42%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
           P     L D T+        +    G+P P   WTK+G+ +       L    G   L+I
Sbjct: 7   PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            +    D G+Y CT  NS G+  + CKLT
Sbjct: 67  HKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 105/271 (38%), Gaps = 30/271 (11%)
Query: 15  PPTVKWY--KGNRELSKRDYSMSYSDGVVS-MEIIDCKPEDSGEYKCVATNKHGTDETNC 71
           P ++ WY  +G + +S +   +   +GV S + I +   ED+G Y+C AT+  G  +   
Sbjct: 32  PESIDWYNPQGEKIISTQRVVVQ-KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 90
Query: 72  VVIVXXXXXXXXXXXLAHNFLYSGDRKYIEK-HIRPAPAIITTRQEIKSSYSSHTDDTGR 130
           VV+                F    D + + +    PAPA+         S+  H ++   
Sbjct: 91  VVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAV---------SWLYHNEEVTT 141
Query: 131 TTTQMXXXXXXXXXXXXXXXXXXKKITRRMNSILXXXXXXXXXXXXKELIM----PPDTA 186
            +                     + I R    +             +++I+    PP  +
Sbjct: 142 ISDNRFAMLANNNLQILNINKSDEGIYRCEGRV-----EARGEIDFRDIIVIVNVPPAIS 196
Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
           M  PQ   K  + T + G+ +  S    G PEP +SW +NG+ +  +    LK  N    
Sbjct: 197 M--PQ---KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TE 249
Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
           L ++ +   D G YVC ATN  G  E +  L
Sbjct: 250 LTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KNGV 244
           AM PP+F     + +ID+G+   +   V G P P VSW  NG+ + S ++  +   + G+
Sbjct: 2   AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL 280
            SL  + V   D G Y C A N  G A    +L  L
Sbjct: 62  HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 54/205 (26%)
Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS--SNILDLKY 240
           P +A  PP+   K  ++ +  G         +GDP P + W KNG+ ++   S    L+ 
Sbjct: 2   PGSAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ 61
Query: 241 KNGVASLQIQEVFP-EDEGVYVCTATNSLGTAETK------------------------- 274
             G++ L+I+ V    D+  Y C A N +G A +                          
Sbjct: 62  PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGT 121
Query: 275 ------------CKLTPLNSSNILDLKYKNGV-----------ASLQIQEVFPEDEGVYV 311
                       CK     + NI  +K +  V             LQI+    ED+G Y 
Sbjct: 122 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYE 181
Query: 312 CTATNSLGTAETKCK---LTVRSTP 333
           C A NS+GT  +K     + VR  P
Sbjct: 182 CVAENSMGTEHSKATNLYVKVRRVP 206

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 40/88 (45%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
           P    ++ D T   G+   LS  + G P P + W + G+ L  S    +       +L +
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKL 277
                EDEGVY C ATN +G  ET  KL
Sbjct: 68  MTEEQEDEGVYTCIATNEVGEVETSSKL 95

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 305 EDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKE 344
           EDEGVY C ATN +G  ET  KL +++TP  + G  P KE
Sbjct: 73  EDEGVYTCIATNEVGEVETSSKLLLQATPQFHPG-YPLKE 111

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
           T + PP F N  ++    +   ++    V G P P V+W KNG  +  S+   +    G 
Sbjct: 308 TVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GG 364
Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
           ++L+I  V   DEG Y C A N  G A++  +L
Sbjct: 365 SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD-LKYKNGVASLQ 248
           P F     D T+ +G+   +   V G P P +SW  +G+P+   +    L  +NGV SL 
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 249 IQEVFPEDEGVYVCTATNSLG 269
           I+ V   D G+Y C ATN  G
Sbjct: 70  IEPVTSRDAGIYTCIATNRAG 90

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 67/188 (35%), Gaps = 46/188 (24%)
Query: 184 DTAMTPPQFANKLTDKTID-DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN 242
           DT +  P    +   +T    GQ + L     G+P PR+ W K          L  ++  
Sbjct: 200 DTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRK------VDGSLSPQWTT 253
Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL------------DLKY 290
              +LQI  V  EDEG Y C A NS G    + ++        L            +L++
Sbjct: 254 AEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRW 313
Query: 291 ---------------KNG------------VASLQIQEVFPEDEGVYVCTATNSLGTAET 323
                          +NG               L+  ++  ED G+Y C A N  GT   
Sbjct: 314 GCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYA 373
Query: 324 KCKLTVRS 331
             +L V++
Sbjct: 374 SAELAVQA 381

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
           P     L ++T   G+ +++S    G+P P++ W K+ + L   + + L  K+G  +L I
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTI 724
Query: 250 QEVFPEDEGVYVCTATNSLGTAETK 274
           + V  EDEG+Y C A + LG A+ +
Sbjct: 725 RRVRKEDEGLYTCQACSVLGCAKVE 749

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 71/193 (36%), Gaps = 51/193 (26%)
Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS--SNILDLKYK 241
           +T   PP+   K  ++ +  G         +GDP P + W KNG+ ++   S    L+  
Sbjct: 1   ETGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 242 NGVASLQIQEVFP-EDEGVYVCTATNSLGTAETK-------------------------- 274
            G++ L+I+ V    D+  Y C A N +G A +                           
Sbjct: 61  GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTR 120
Query: 275 -----------CKLTPLNSSNILDLKYKNGV-----------ASLQIQEVFPEDEGVYVC 312
                      CK     + NI  +K +  V             LQI+    ED+G Y C
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYEC 180
Query: 313 TATNSLGTAETKC 325
            A NS+GT  +K 
Sbjct: 181 VAENSMGTEHSKA 193

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
           P     L ++T   G+ +++S    G+P P++ W K+ + L   + + L  K+G  +L I
Sbjct: 11  PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTI 68
Query: 250 QEVFPEDEGVYVCTATNSLGTAETK 274
           + V  EDEG+Y C A + LG A+ +
Sbjct: 69  RRVRKEDEGLYTCQACSVLGCAKVE 93

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 64/156 (41%), Gaps = 48/156 (30%)
Query: 213 VKGDPEPRVSWTKNGQPLNSSNILDLKY---KNGVASLQIQEVFPEDEGVYVCTATNSLG 269
           V+  P+P +SWT+N   +    + D +Y   +NG   L I  V   D+G+Y CTA N +G
Sbjct: 31  VESYPQPEISWTRNKILIK---LFDTRYSIRENG-QLLTILSVEDSDDGIYCCTANNGVG 86
Query: 270 TAETKC-----KLTPLNSSNILDLKYKNGV------------------------------ 294
            A   C     K+ P  +   +++K   G+                              
Sbjct: 87  GAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR 146
Query: 295 ------ASLQIQEVFPEDEGVYVCTATNSLGTAETK 324
                  SL+I  V  ED G Y C A NSLGTA +K
Sbjct: 147 IAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 181 MPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY 240
           +PP  +M  PQ   K  + T + G+ +  S    G PEP +SW +NG+ +  +    LK 
Sbjct: 95  VPPAISM--PQ---KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG 149
Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
            N    L ++ +   D G YVC ATN  G  E +  L
Sbjct: 150 SN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184

>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r Mutant Complex Length = 109

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 35/79 (44%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
           +PP F  +     +  G   +L  VV G+P P V W K GQ L +S  L          L
Sbjct: 13  SPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 248 QIQEVFPEDEGVYVCTATN 266
            +    P D GVYVC A N
Sbjct: 73  LLTAALPTDAGVYVCRARN 91

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 188 TPP--QFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK--YKNG 243
            PP  Q    + + T + GQ + L     G PEP +SWTK+G+P+ +    D K  + + 
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252
Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
            + L I+ V   DE  YVC A N  G  +    L
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG-VASLQIQEVFPEDEG 258
           TI +G+ L+L+  V GDP P VSW KN + L S +  +LK++ G  A   I  V   D G
Sbjct: 233 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSG 292
Query: 259 VYVCTATNSLGT 270
            Y     N  G+
Sbjct: 293 KYGLVVKNKYGS 304

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG----- 243
           PP       ++T++ G  + L  V  G+P P +SW  +G+ + +++    +Y+ G     
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND----RYQVGQYVTV 484
Query: 244 ----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVAS 296
               V+ L I  V   D G+Y C A + +G AE   KL       I  ++ K  VA 
Sbjct: 485 NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAG 541

>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 109

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 34/79 (43%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
           +PP F        +  G   +L  VV G+P P V W K GQ L +S  L          L
Sbjct: 13  SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 248 QIQEVFPEDEGVYVCTATN 266
            +    P D GVYVC A N
Sbjct: 73  LLTAALPTDAGVYVCRARN 91

>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 107

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 34/79 (43%)
Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
           +PP F        +  G   +L  VV G+P P V W K GQ L +S  L          L
Sbjct: 12  SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 71
Query: 248 QIQEVFPEDEGVYVCTATN 266
            +    P D GVYVC A N
Sbjct: 72  LLTAALPTDAGVYVCRARN 90

>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13 Length = 212

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG-VASLQIQEVFPEDEG 258
           TI +G+ L+L+  V GDP P VSW KN + L  ++  +LK++ G  A   I  V   D G
Sbjct: 128 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSG 187
Query: 259 VYVCTATNSLGT 270
            Y     N  G+
Sbjct: 188 KYGLVVKNKYGS 199

>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form Length = 103

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 12 TKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
          +KP   VKWY    EL   SK  Y+ +   GV+++EI+DC  +DSG Y+ V TN  G
Sbjct: 34 SKPTAEVKWYHNGVELQESSKIHYTNT--SGVLTLEILDCHTDDSGTYRAVCTNYKG 88

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 63/182 (34%), Gaps = 61/182 (33%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
           G+P P +SW KNG+     + I  +K ++   SL ++ V P D G Y C   N  G+   
Sbjct: 41  GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 100
Query: 274 KCKL---------------TPLNSSNIL--DLKYKNGVAS-------------------- 296
              L                P N + +L  D+++   V S                    
Sbjct: 101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 160
Query: 297 -----------------------LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
                                  L++  V   D G Y+C ATN +G AE    L+V    
Sbjct: 161 PDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR 220
Query: 334 AA 335
           AA
Sbjct: 221 AA 222

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
           G  L L  +  G P P ++W K G  L S      K++N   +L+I  V  ED G Y C 
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDKA---KFENFNKALRITNVSEEDSGEYFCL 293
Query: 264 ATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 323
           A+N +G+      +    +   LD + KN + +       P ++G  VC A    G  + 
Sbjct: 294 ASNKMGSIRHTISVRVKAAPYWLD-EPKNLILA-------PGEDGRLVCRAN---GNPKP 342
Query: 324 KCKLTVRSTPAANLGKSPSKE 344
             +  V   P  +   +P++E
Sbjct: 343 TVQWMVNGEPLQSAPPNPNRE 363

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN--GVAS 246
           PP+     +D +ID+G+ L ++    G+P P V+W+  G+ ++S        +N   + +
Sbjct: 7   PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 66
Query: 247 LQIQEVFPEDEGVYVCTATNSLGT 270
           L I +V  +D G+Y  +  N  G+
Sbjct: 67  LIIMDVQKQDGGLYTLSLGNEFGS 90

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN--GVAS 246
           PP+     +D +ID+G+ L ++    G+P P V+W+  G+ ++S        +N   + +
Sbjct: 5   PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 247 LQIQEVFPEDEGVYVCTATNSLGT 270
           L I +V  +D G+Y  +  N  G+
Sbjct: 65  LIIMDVQKQDGGLYTLSLGNEFGS 88

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS---NILDLKYKNGVASLQIQEVFPED 256
           T+ +G+    S    G+P P V+W + GQ L++S    +   KYK   ++ +I  V   D
Sbjct: 25  TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK---STFEISSVQASD 81
Query: 257 EGVYVCTATNSLGTAETKCKLT 278
           EG Y     NS G  E +  LT
Sbjct: 82  EGNYSVVVENSEGKQEAEFTLT 103

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS---NILDLKYKNGVASLQIQEVFPED 256
           T+ +G+    S    G+P P V+W + GQ L++S    +   KYK   ++ +I  V   D
Sbjct: 19  TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK---STFEISSVQASD 75
Query: 257 EGVYVCTATNSLGTAETKCKLT 278
           EG Y     NS G  E +  LT
Sbjct: 76  EGNYSVVVENSEGKQEAEFTLT 97

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 63/182 (34%), Gaps = 62/182 (34%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
           G+P P + W KNG+     + I   K +N   SL ++ V P D+G Y C   N  G+   
Sbjct: 37  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 274 KCKL---------------TPLNSSNIL--DLKY-------------------KNG---- 293
              L                P N+S ++  D+++                   KNG    
Sbjct: 97  TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 156
Query: 294 ---------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
                                +  L I+ V  ED G Y C A NS+G +     LTV   
Sbjct: 157 PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPA 216
Query: 333 PA 334
           P 
Sbjct: 217 PG 218

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 63/182 (34%), Gaps = 62/182 (34%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
           G+P P + W KNG+     + I   K +N   SL ++ V P D+G Y C   N  G+   
Sbjct: 35  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 94
Query: 274 KCKL---------------TPLNSSNIL--DLKY-------------------KNG---- 293
              L                P N+S ++  D+++                   KNG    
Sbjct: 95  TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 154
Query: 294 ---------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
                                +  L I+ V  ED G Y C A NS+G +     LTV   
Sbjct: 155 PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPA 214
Query: 333 PA 334
           P 
Sbjct: 215 PG 216

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 63/182 (34%), Gaps = 62/182 (34%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
           G+P P + W KNG+     + I   K +N   SL ++ V P D+G Y C   N  G+   
Sbjct: 36  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 95
Query: 274 KCKL---------------TPLNSSNIL--DLKY-------------------KNG---- 293
              L                P N+S ++  D+++                   KNG    
Sbjct: 96  TYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 155
Query: 294 ---------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
                                +  L I+ V  ED G Y C A NS+G +     LTV   
Sbjct: 156 PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPA 215
Query: 333 PA 334
           P 
Sbjct: 216 PG 217

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 63/182 (34%), Gaps = 62/182 (34%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
           G+P P + W KNG+     + I   K +N   SL ++ V P D+G Y C   N  G+   
Sbjct: 37  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 274 KCKL---------------TPLNSSNIL--DLKY-------------------KNG---- 293
              L                P N+S ++  D+++                   KNG    
Sbjct: 97  TYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 156
Query: 294 ---------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
                                +  L I+ V  ED G Y C A NS+G +     LTV   
Sbjct: 157 PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPA 216
Query: 333 PA 334
           P 
Sbjct: 217 PG 218

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 63/182 (34%), Gaps = 62/182 (34%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
           G+P P + W KNG+     + I   K +N   SL ++ V P D+G Y C   N  G+   
Sbjct: 37  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 274 KCKL---------------TPLNSSNIL--DLKY-------------------KNG---- 293
              L                P N+S ++  D+++                   KNG    
Sbjct: 97  TYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 156
Query: 294 ---------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
                                +  L I+ V  ED G Y C A NS+G +     LTV   
Sbjct: 157 PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPA 216
Query: 333 PA 334
           P 
Sbjct: 217 PG 218

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 215 GDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
           G+P P +SW KNG+     + I  +K ++   SL ++ V P D G Y C   N  G+   
Sbjct: 149 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 208
Query: 274 KCKLTPLNSS 283
              L  L  S
Sbjct: 209 TYTLDVLERS 218

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL--NSSNILDLKYKNGVASL 247
           P+     TD  +   +   L+  V+G PEP + W K+G+P+  N      +++K+G    
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 248 --QIQEVFPEDEGVYVCTATNSLGTAETK 274
              +Q    +D G Y C A N +G A ++
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL--NSSNILDLKYKNGVASL 247
           P+     TD  +   +   L+  V+G PEP + W K+G+P+  N      +++K+G    
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 248 --QIQEVFPEDEGVYVCTATNSLGTAETK 274
              +Q    +D G Y C A N +G A ++
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98

>pdb|2BK8|A Chain A, M1 Domain From Titin Length = 97

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 18 VKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
          V WY G R+L   + Y ++Y DGV  + + D    D G Y+C   N +G D +
Sbjct: 34 VTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSS 86

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP---EDEGVYVCT 263
           + LS  VKG+P+P + W  NG  ++    +D +Y     SL I    P   +D G Y C 
Sbjct: 26  VKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINN--PNKTQDAGTYQCI 81
Query: 264 ATNSLGT 270
           ATNS GT
Sbjct: 82  ATNSFGT 88

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP---EDEGVYVCT 263
           + LS  VKG+P+P + W  NG  ++    +D +Y     SL I    P   +D G Y C 
Sbjct: 25  VKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINN--PNKTQDAGTYQCI 80
Query: 264 ATNSLGT 270
           ATNS GT
Sbjct: 81  ATNSFGT 87

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 205 QCLDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT 263
           Q + L+    G PEP ++WTK+G+P+    N     +    + L I++V   DE  Y+C 
Sbjct: 29  QSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICI 88
Query: 264 ATNSLGTAETKCKL 277
           A N  G  +    L
Sbjct: 89  AENKAGEQDATIHL 102

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 65/204 (31%)
Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP--------------LNSSN 234
           PP+     +D  +  G+   L+   +G P P + W K G+               L S +
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA---ETKCKLTPL------NSSNI 285
           +  L+  +G  S         DEGVYVC A N LG A   +   ++  L      N S++
Sbjct: 69  LFFLRIVHGRKSRP-------DEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV 121
Query: 286 LDLKYKNGVASLQIQEVFPE----------------------------------DEGVYV 311
           +    +  V   Q     PE                                  D G YV
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYV 181
Query: 312 CTATNSLGTAETK-CKLTVRSTPA 334
           C  TN +G  E++  +LTV   P+
Sbjct: 182 CVGTNMVGERESEVAELTVLERPS 205

>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor Length = 118

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK-YKNG 243
           T   PP+  + L +  +    C++   VV+G+P P + W  NGQPL  S I+ ++ Y+ G
Sbjct: 4   TVYYPPRVVS-LEEPELRLEHCIEF--VVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 60
Query: 244 VAS---LQIQEVFPEDEGVYVCTATNSLGTA 271
             S   L   +    + G Y   A N LGTA
Sbjct: 61  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTA 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-52
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-33
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-33
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-32
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-44
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-33
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-15
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-43
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-38
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-14
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-43
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-27
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-18
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	7e-17
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-42
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	7e-23
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-19
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-18
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-12
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-42
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-17
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-10
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-06
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-41
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-19
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-18
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-11
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-40
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-24
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-08
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-07
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-39
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-17
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-39
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-26
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-25
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-39
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-19
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-38
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-29
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	9e-28
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-18
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-16
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-38
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-18
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-37
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-18
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-08
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-36
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-23
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-13
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-13
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-36
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-23
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-17
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	8e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-35
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-28
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-25
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-20
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-19
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-10
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	6e-34
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-24
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	7e-34
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-20
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-32
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	8e-18
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-32
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-19
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-32
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-21
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-32
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-29
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-11
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-11
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-09
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-32
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-31
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	6e-17
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-31
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-16
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-07
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-31
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-19
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-31
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-21
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-31
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-12
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-11
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-30
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-17
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-30
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-13
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-30
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-18
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-30
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-30
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-30
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-28
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-25
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-08
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-30
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-19
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-30
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-22
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-12
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-09
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-29
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	8e-12
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-11
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-29
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-18
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-13
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	9e-29
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-26
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-21
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-10
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-09
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-28
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-17
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-28
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	6e-22
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-12
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-08
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-27
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	7e-22
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-18
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	7e-16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-27
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-14
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-09
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-27
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	6e-22
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-27
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-19
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-27
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-21
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-06
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-26
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	9e-19
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-10
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-08
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-07
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-25
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-20
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-25
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-24
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-19
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-04
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-25
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-10
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-09
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-25
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-09
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	5e-08
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-25
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-22
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-17
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	9e-17
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-24
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-16
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-06
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-24
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-17
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-11
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-11
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-24
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-10
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	7e-08
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-24
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-19
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-09
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-09
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-24
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-18
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-10
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-08
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-23
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	6e-17
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-23
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-11
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-23
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-12
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-22
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-21
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-11
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-07
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-22
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-14
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-22
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-21
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-13
2ens_A	96	Advanced glycosylation END product-specific recept	1e-21
2ens_A	96	Advanced glycosylation END product-specific recept	1e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	5e-21
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-12
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-20
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-12
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-20
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	9e-19
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-14
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-10
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-20
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-17
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-12
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-06
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-20
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-20
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-08
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-06
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-20
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	9e-13
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-20
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-15
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-20
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	7e-11
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	5e-20
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	9e-11
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	5e-20
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-19
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-20
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-20
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	7e-20
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-18
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-13
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-09
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-20
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-18
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-11
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-19
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-19
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-13
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-19
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	3e-14
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-19
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-19
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-19
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-13
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-19
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-14
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-18
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	6e-14
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-18
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-16
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-09
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-18
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-14
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	7e-06
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-18
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-09
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-18
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-17
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-09
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-06
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	4e-18
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	5e-13
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	5e-18
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	8e-10
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-17
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-11
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-05
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-17
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-11
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-17
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-14
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-17
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-13
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-17
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-13
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	9e-17
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	5e-15
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-16
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	8e-15
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	8e-07
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-04
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-16
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	8e-11
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	8e-16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-11
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-08
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	9e-16
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-13
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	8e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-04
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-15
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	8e-15
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-15
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-08
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-15
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-13
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-15
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-11
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-07
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-05
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-05
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-15
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-06
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-14
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-12
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-07
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	7e-04
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-14
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-14
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-14
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-14
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-14
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	6e-07
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-13
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	6e-07
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	8e-07
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	7e-07
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	8e-07
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-12
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	5e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-04
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	5e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	6e-11
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	6e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-11
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-06
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	8e-11
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	8e-11
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	8e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	5e-04
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-10
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	6e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-10
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	9e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	5e-10
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	5e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-09
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	9e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-09
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	9e-07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-05
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-05
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-05
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	8e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	4e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-06
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	5e-04
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-07
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	7e-07
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	1e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	7e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-04
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	4e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	7e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	5e-04
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	6e-05
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	8e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	8e-05
2jtd_A	142	Myomesin-1, skelemin; immunoglobulin domain, muscl	9e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	1e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-04
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	2e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	4e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	4e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	6e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	6e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	7e-04
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	8e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  179 bits (457), Expect = 7e-52
 Identities = 69/381 (18%), Positives = 123/381 (32%), Gaps = 87/381 (22%)

Query: 13  KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
            P   + WYK + +L S   Y M + + V S+ I      D GEY C A N  G   ++ 
Sbjct: 32  TPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSA 91

Query: 72  VVIVESEEESKE-QQELAHNFLYSGDRKYIEKHI--RPAPAIITTR--QEIKSSYSSHTD 126
           V++++  +      ++L       G     E  I       +   +  + +K   +  T 
Sbjct: 92  VLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTS 151

Query: 127 DTGRTTTQMSTL---------SSNYS-SSTNNATSPSKKITRRMNSILDTDSPSRSRSTT 176
                    +TL            Y+ S++N   +                      S++
Sbjct: 152 FIHNV----ATLQILQTDQSHVGQYNCSASNPLGT---------------------ASSS 186

Query: 177 KELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL 236
            +L +       PP F  K     +  G+       V G    +++W K+ + +      
Sbjct: 187 AKLTLSEHE--VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY 244

Query: 237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------------------ 278
            +      A+L + +V   D G Y C A+N  G      +L                   
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVK 304

Query: 279 --------------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 312
                                      +  S+   + +   VA L++  +  ED G Y C
Sbjct: 305 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 364

Query: 313 TATNSLGTAETKCKLTVRSTP 333
            A N+ G+A +   L V+  P
Sbjct: 365 EAHNAAGSASSSTSLKVKEPP 385

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  129 bits (327), Expect = 1e-33
 Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 44/191 (23%)

Query: 187 MTPPQFANKLTD-KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
             PP+F  KL   + +   +       + G PE +V W K+   +  S+   + +   VA
Sbjct: 288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 347

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--------------------------- 278
            L++  +  ED G Y C A N+ G+A +   L                            
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 407

Query: 279 ----------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 322
                            L S     +  +N + S+ I  V   D G Y C A+N +G+  
Sbjct: 408 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467

Query: 323 TKCKLTVRSTP 333
               +T+++ P
Sbjct: 468 CVGSITLKAPP 478

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  129 bits (326), Expect = 2e-33
 Identities = 53/196 (27%), Positives = 72/196 (36%), Gaps = 46/196 (23%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
           AM PP F   L       G+ + L   V G PE R++W K    L S+    +++KN VA
Sbjct: 2   AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--------------------------- 278
           SL I +V   D G Y C A NS+G   +   L                            
Sbjct: 62  SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121

Query: 279 -------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG 319
                               L     L   + + VA+LQI +      G Y C+A+N LG
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181

Query: 320 TAETKCKLTVRSTPAA 335
           TA +  KLT+      
Sbjct: 182 TASSSAKLTLSEHEVP 197

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  124 bits (314), Expect = 6e-32
 Identities = 41/187 (21%), Positives = 63/187 (33%), Gaps = 44/187 (23%)

Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
             PP F  K        G  + L   ++G P  +VSW K+ + L S     +  +N + S
Sbjct: 382 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 441

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------------------------- 278
           + I  V   D G Y C A+N +G+      +T                            
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATI 501

Query: 279 ----------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 322
                            +  S+ + + Y   +A+LQ     P + G Y C   N  GT E
Sbjct: 502 EGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE 561

Query: 323 TKCKLTV 329
               L+V
Sbjct: 562 CFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 73.7 bits (181), Expect = 1e-14
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 1   MQNVIKVKVGST---------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKP 50
           ++    VK              P   V WYK   E+ +   + MS+ + V  +E+ +   
Sbjct: 297 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV 356

Query: 51  EDSGEYKCVATNKHGTDETNCVVIVES 77
           EDSG+Y C A N  G+  ++  + V+ 
Sbjct: 357 EDSGDYTCEAHNAAGSASSSTSLKVKE 383

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 72.9 bits (179), Expect = 2e-14
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSG 54
           ++   G+           PP  V W+K  REL     Y +   + + S+ I++    D G
Sbjct: 394 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 453

Query: 55  EYKCVATNKHGTDETNCVVIVES 77
           EY+C A+N  G+D     + +++
Sbjct: 454 EYQCKASNDVGSDTCVGSITLKA 476

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 71.0 bits (174), Expect = 1e-13
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 11  STKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
               P +V W+K   E+ +   +  +SYS+ + +++    +P ++G+Y C   N+ GT E
Sbjct: 502 EGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE 561

Query: 69  TNCVVIV 75
               + V
Sbjct: 562 CFATLSV 568

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  154 bits (391), Expect = 1e-44
 Identities = 60/294 (20%), Positives = 108/294 (36%), Gaps = 29/294 (9%)

Query: 6   KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
           K KV + K    + WYK  RE+S  D    + DG+ ++ I +   +D+G Y+ +  +  G
Sbjct: 27  KCKVANIKKETHIVWYKDEREIS-VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 85

Query: 66  TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIE------------KHIRPAPAIITT 113
            D++   ++ E+ +E     E+      S     I+             +      +  +
Sbjct: 86  KDKSRLKLVDEAFKE--LMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWS 143

Query: 114 R--QEIKSSYSSHTDDTGRTTT-QMSTLSS----NYSSSTNNATSPSKKITRRMNSILDT 166
                I+ S    T  TG     Q++  +      Y               + ++  L  
Sbjct: 144 HNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY---VMELFDGKTGHQKTVD--LSG 198

Query: 167 DSPSRSRSTTKELIMPPDTA-MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK 225
            +   + +  + L                     TI +G+ L+L+  V GDP P VSW K
Sbjct: 199 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK 258

Query: 226 NGQPLNSSNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           N + L S +  +LK++    A   I  V   D G Y     N  G+  +   ++
Sbjct: 259 NEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  125 bits (316), Expect = 1e-33
 Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 61/226 (26%)

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKNG 243
              T P F   L+   +     + L   V     E  + W K+ + ++        +K+G
Sbjct: 3   DPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDFKDG 59

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------------------------- 278
           + +L I E   +D G+Y     +  G  +++ KL                          
Sbjct: 60  ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119

Query: 279 ----------------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVY 310
                                        +  S+ +          LQI E  P D+G Y
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 179

Query: 311 VCTATNSLGTAETKCKLTVRSTPAANL----GKSPSKESDKAPRFF 352
           V    +     +    L+ ++   A       K  +       R  
Sbjct: 180 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 225

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 1   MQNVIKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCK 49
           + +V+ ++ G            PPP V W K  + L           +       I    
Sbjct: 228 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVS 287

Query: 50  PEDSGEYKCVATNKHGTDETNCVVIVESEE 79
             DSG+Y  V  NK+G++ ++  V V   E
Sbjct: 288 TADSGKYGLVVKNKYGSETSDFTVSVFIPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 73.4 bits (180), Expect = 8e-15
 Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 3/110 (2%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
            +   V        V W      +          +   + ++I +  P D G+Y     +
Sbjct: 126 QLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD 185

Query: 63  KHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIIT 112
                +    +  ++ +E+    E       +   K   + +   P ++T
Sbjct: 186 GKTGHQKTVDLSGQAYDEAYA--EFQRLKQAAIAEKNRARVLGGLPDVVT 233

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  151 bits (382), Expect = 1e-43
 Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 44/192 (22%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
           AM PP F  K     +  G+       V G    +++W K+ + +       +      A
Sbjct: 2   AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--------------------------- 278
           +L + +V   D G Y C A+N  G      +L                            
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121

Query: 279 -----------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 321
                             +  S+   + +   VA L++  +  ED G Y C A N+ G+A
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181

Query: 322 ETKCKLTVRSTP 333
            +   L V+  P
Sbjct: 182 SSSTSLKVKEPP 193

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  137 bits (347), Expect = 2e-38
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 44/187 (23%)

Query: 189 PPQFANKLTD-KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
           PP+F  KL   + +   +       + G PE +V W K+   +  S+   + +   VA L
Sbjct: 98  PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 157

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------------------- 278
           ++  +  ED G Y C A N+ G+A +   L                              
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ 217

Query: 279 --------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 324
                          L S     +  +N + S+ I  V   D G Y C A+N +G+    
Sbjct: 218 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277

Query: 325 CKLTVRS 331
             +T+++
Sbjct: 278 GSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG 54
           ++   G+           PP  V W+K  REL S + Y +   + + S+ I++    D G
Sbjct: 202 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 261

Query: 55  EYKCVATNKHGTDETNCVVIVES 77
           EY+C A+N  G+      + +++
Sbjct: 262 EYQCKASNDVGSYTCVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 1   MQNVIKVKVGST---------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKP 50
           ++    VK              P   V WYK   E+ +   + MS+ + V  +E+ +   
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV 164

Query: 51  EDSGEYKCVATNKHGTDETNCVVIVES 77
           EDSG+Y C A N  G+  ++  + V+ 
Sbjct: 165 EDSGDYTCEAHNAAGSASSSTSLKVKE 191

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 14 PPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
           P  + W K NRE+    +Y M+  +   ++ ++     D+G+Y C A+N  G D  +  
Sbjct: 33 APIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 92

Query: 73 VIVES 77
          + V+ 
Sbjct: 93 LGVQE 97

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  147 bits (372), Expect = 4e-43
 Identities = 46/190 (24%), Positives = 70/190 (36%), Gaps = 48/190 (25%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--NGVAS 246
            P F   L    + +G      A + G P P VSW ++GQ +++S +  ++    +G A 
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------------------------- 278
           L I  V   + G Y   ATN  G A +  +L                             
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124

Query: 279 ------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 320
                              + SS    +  +  + SL I E +PED G Y   ATNS+G 
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184

Query: 321 AETKCKLTVR 330
           A +  +L V+
Sbjct: 185 ATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  106 bits (266), Expect = 1e-27
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 2/107 (1%)

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
             ++T EL++  +TA  PP F  +L   T+  G  + L   V G P P V + ++G  + 
Sbjct: 88  QATSTAELLVKAETA--PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ 145

Query: 232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           SS    +  +  + SL I E +PED G Y   ATNS+G A +  +L 
Sbjct: 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 80.2 bits (198), Expect = 6e-18
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG 54
           + V+ GS           P P VK+Y+   E+ S  D+ +S    + S+ I +  PEDSG
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSG 172

Query: 55  EYKCVATNKHGTDETNCVVIVE 76
            Y   ATN  G   +   ++V+
Sbjct: 173 TYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 77.1 bits (190), Expect = 7e-17
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 12/88 (13%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCKPED 52
           + V  GST          P P V W++  + +S        +S+SDG   + I      +
Sbjct: 15  VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKAN 74

Query: 53  SGEYKCVATNKHGTDETNCVVIVESEEE 80
           SG Y   ATN  G   +   ++V++E  
Sbjct: 75  SGRYSLKATNGSGQATSTAELLVKAETA 102

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  151 bits (383), Expect = 1e-42
 Identities = 60/362 (16%), Positives = 109/362 (30%), Gaps = 48/362 (13%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
                 W K  +  + ++++ +      S+  +  +  D G Y+C A    G   +  V+
Sbjct: 35  QGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR-VI 93

Query: 74  IVESEEESKEQQELAHNFLYSGDRKYIEKHI---RPAPAIITTRQEIKSSYSSHTDDTGR 130
                       +        G    ++  +    P P I   ++   +  ++   D  R
Sbjct: 94  SFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153

Query: 131 TTTQMSTLSSNYSSSTNNATSPSKKIT-RRMNSILDTDSPSRSRSTTKELIMPPDTAMTP 189
             T     +  ++  T    S   K      N+ +D +         K +          
Sbjct: 154 RITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL-VEYEIKGVTKDNSGYKGE 212

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA--SL 247
           P       D     G    +  +   +P    ++ KNG+ +N +    +   N  +   L
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 272

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETK-CKLT----------PLNSSNI-----LDLK-- 289
             +   PEDEGVY C   N +G  +    KLT          P     +     + +   
Sbjct: 273 LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCK 332

Query: 290 -----------YKNGVA-----------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 327
                        N               L I+ V   D+G Y C ATN  G    +  +
Sbjct: 333 VTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 392

Query: 328 TV 329
            V
Sbjct: 393 QV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 97.7 bits (243), Expect = 7e-23
 Identities = 44/305 (14%), Positives = 78/305 (25%), Gaps = 60/305 (19%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME--------IIDCKPEDSGE 55
            +   + +  P P + W K             +   + +          +      D  +
Sbjct: 119 QLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178

Query: 56  YKCVATNKHGTDETNCVVI-VESEEESKEQQELAHNFLYSGDRKYIEKHIR--------- 105
           Y C A N    +E   V   ++   +     +      Y       +             
Sbjct: 179 YVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGS 238

Query: 106 -PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTL---------SSNYS-SSTNNATSPSK 154
            P       +     + +     T    T    L            Y+    N    P  
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ- 297

Query: 155 KITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDK-TIDDGQCLDLSAVV 213
                              S    ++  P       ++  K      +  GQ + +   V
Sbjct: 298 -----------------KHSLKLTVVSAP-------KYEQKPEKVIVVKQGQDVTIPCKV 333

Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
            G P P V W+ N +PL+          +    L I+ V   D+G Y C ATN  G    
Sbjct: 334 TGLPAPNVVWSHNAKPLSGGRA---TVTDS--GLVIKGVKNGDKGYYGCRATNEHGDKYF 388

Query: 274 KCKLT 278
           +  + 
Sbjct: 389 ETLVQ 393

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 86.5 bits (214), Expect = 5e-19
 Identities = 41/212 (19%), Positives = 61/212 (28%), Gaps = 69/212 (32%)

Query: 189 PPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYK------ 241
                 K  +KT  +G+   L   +    P+P ++W K     + +  +    +      
Sbjct: 100 LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP 159

Query: 242 NGVASLQIQEVFPEDE---GVYVCTATNSLGTAETKCKLTPLNSSNILDLK--------- 289
           +G  +L    V  ED      YVCTA N+    E       +      +           
Sbjct: 160 DG--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY 217

Query: 290 -----------------------------YKNGVA------------------SLQIQEV 302
                                        +KNG                     L  +  
Sbjct: 218 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 277

Query: 303 FPEDEGVYVCTATNSLGTAETK-CKLTVRSTP 333
            PEDEGVY C   N +G  +    KLTV S P
Sbjct: 278 LPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP 309

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 85.3 bits (211), Expect = 1e-18
 Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 59/218 (27%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASL 247
            P   ++  +    +     L  +++G+ +  + SW K+G+  N     +   +    SL
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE-HNAALRKDEGSL 64

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETK------------------------------CK- 276
                   DEG Y C A    G A ++                              C  
Sbjct: 65  VFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVL 124

Query: 277 -----------------LTPLNSSNILDLKYK---NGVASLQIQEVFPEDE---GVYVCT 313
                              P       D +     +G  +L    V  ED      YVCT
Sbjct: 125 PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG--NLYFTIVTKEDVSDIYKYVCT 182

Query: 314 ATNSLGTAE-TKCKLTVRSTPAANLGKSPSKESDKAPR 350
           A N+    E    +  ++     N G           +
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 220

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 67.6 bits (165), Expect = 1e-12
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 13/83 (15%)

Query: 2   QNVIKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPED 52
           + VI VK G            P P V W    + LS    +++ S     + I   K  D
Sbjct: 316 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS----GLVIKGVKNGD 371

Query: 53  SGEYKCVATNKHGTDETNCVVIV 75
            G Y C ATN+HG      +V V
Sbjct: 372 KGYYGCRATNEHGDKYFETLVQV 394

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  150 bits (381), Expect = 3e-42
 Identities = 67/377 (17%), Positives = 119/377 (31%), Gaps = 77/377 (20%)

Query: 14  PPPTVKWYKGNRELSKRD---YSMSYSDG--VVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
           P P+  W + +R  +       SM    G  V+         E  GEY+C A NK GT  
Sbjct: 45  PAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL 104

Query: 69  TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHI---RPAPAIITTRQEIKSSYSSH- 124
           +N + +  S+     ++ L    +  G    ++ +     P+P I      ++       
Sbjct: 105 SNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKR 164

Query: 125 --TDDTGR---TTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKEL 179
                 G    +   +  + ++Y   + NA                T +  +    T ++
Sbjct: 165 VSQGHNGDLYFSNVMLQDMQTDY---SCNARFHF------------THTIQQKNPFTLKV 209

Query: 180 IMPPDTAMTPPQF---ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL 236
           +     A   P F       + + +  G  L L  +  G P P ++W K G  L S    
Sbjct: 210 LTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA- 268

Query: 237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------PL 280
             K++N   +L+I  V  ED G Y C A+N +G+      +                   
Sbjct: 269 --KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAP 326

Query: 281 NSSNILDLK-----------YKNGVA---------------SLQIQEVFPEDEGVYVCTA 314
                L  +             NG                 ++  ++       VY C  
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNT 386

Query: 315 TNSLGTAETKCKLTVRS 331
           +N  G       ++V  
Sbjct: 387 SNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 81.8 bits (202), Expect = 2e-17
 Identities = 36/217 (16%), Positives = 59/217 (27%), Gaps = 60/217 (27%)

Query: 187 MTPPQFANK-LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
             PP    +   D  +D    + +    KG+P P   WT+N +  N +    +  +    
Sbjct: 14  TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG 73

Query: 246 SLQIQEVFP----EDEGVYVCTATNSLGTAET---------------------------- 273
           +L I         E EG Y C A N  GTA +                            
Sbjct: 74  TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAP 133

Query: 274 ---KCKLT---------------PLNSSNILDLKYKNGVASLQIQEVFPED-EGVYVCTA 314
              +C                     + +    +  NG   L    V  +D +  Y C A
Sbjct: 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG--DLYFSNVMLQDMQTDYSCNA 191

Query: 315 TNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRF 351
                          +  P      +    +++ P F
Sbjct: 192 RFHFTHT------IQQKNPFTLKVLTTRGVAERTPSF 222

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 13  KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            P PTV+W      L  +  + +   +    ++   D +      Y+C  +N+HG    N
Sbjct: 339 NPKPTVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLAN 396

Query: 71  CVVIVES 77
             V V  
Sbjct: 397 AFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMS-YSDGVVSMEIIDCKPEDS-GEYKCVAT 61
            ++       P P + W   + E   +D  +S   +G   +   +   +D   +Y C A 
Sbjct: 135 TLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG--DLYFSNVMLQDMQTDYSCNAR 192

Query: 62  NKHGTDETNCVVIVESEEESKEQQELAHNFLY 93
                              ++   E   +F+Y
Sbjct: 193 FHFTHTIQQKNPFTLKVLTTRGVAERTPSFMY 224

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  146 bits (369), Expect = 9e-41
 Identities = 77/372 (20%), Positives = 116/372 (31%), Gaps = 78/372 (20%)

Query: 14  PPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHGTDETNC 71
           PP T +W     EL    D       G   + I +  K +D+G Y+CVATN  GT  +  
Sbjct: 35  PPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCVATNARGTVVSRE 92

Query: 72  VVIVESEEESKEQQELAHNFLYSGDRKYIEKHI---RPAPAIITTRQEIKSSYSSHTDDT 128
             +     +    +E     +  G             PA +      E  +   +   D 
Sbjct: 93  ASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPA---DG 149

Query: 129 GRTTTQMS-TL---------SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKE 178
            R  +Q +  L           NY   +  AT          + I        S+ +   
Sbjct: 150 RRFVSQTTGNLYIAKTEASDLGNY---SCFAT----------SHIDFITKSVFSKFSQLS 196

Query: 179 LIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL 238
           L         P   A    D     GQ + L     G+P P++ W K      S      
Sbjct: 197 LAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS------ 250

Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------PLNS 282
           K+ +    L IQ V  EDEG Y C A N  G    + ++                  + S
Sbjct: 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGS 310

Query: 283 SNILDLK-----------YKNGVA------------SLQIQEVFPEDEGVYVCTATNSLG 319
                              ++G               L+  ++  ED G+Y C A N  G
Sbjct: 311 DLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG 370

Query: 320 TAETKCKLTVRS 331
           T     +LTV++
Sbjct: 371 TVYASAELTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 88.0 bits (218), Expect = 1e-19
 Identities = 31/198 (15%), Positives = 46/198 (23%), Gaps = 50/198 (25%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
                  A +     I +G  +  + +     P     W  N  P               
Sbjct: 98  GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 157

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK--------------- 289
            +L I +    D G Y C AT+ +              S   +                 
Sbjct: 158 GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADT 217

Query: 290 ------------------------YKNGV----------ASLQIQEVFPEDEGVYVCTAT 315
                                    K               L IQ V  EDEG Y C A 
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 277

Query: 316 NSLGTAETKCKLTVRSTP 333
           N  G    + ++ + + P
Sbjct: 278 NIKGRDTYQGRIIIHAQP 295

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 84.9 bits (210), Expect = 2e-18
 Identities = 34/216 (15%), Positives = 54/216 (25%), Gaps = 61/216 (28%)

Query: 189 PPQFANKLTDKTIDDGQCLD---LSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
            P F  +       +G   +   L+   + +P     W  NG  L        +   G  
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-- 61

Query: 246 SLQIQEVF-PEDEGVYVCTATNSLGTAET------------------------------- 273
            L I      +D G Y C ATN+ GT  +                               
Sbjct: 62  DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMF 121

Query: 274 KCKLT-----------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 316
            C                     + +     +    G  +L I +    D G Y C AT+
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATS 179

Query: 317 SLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFF 352
            +             +  + L  +       AP   
Sbjct: 180 HIDFITKS-----VFSKFSQLSLAAEDARQYAPSIK 210

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 13  KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
           KP P V+W +  + L+ ++  +  S G   +       EDSG Y+CVA NKHGT   +  
Sbjct: 321 KPRPAVRWLRDGQPLASQNR-IEVSGG--ELRFSKLVLEDSGMYQCVAENKHGTVYASAE 377

Query: 73  VIVES 77
           + V++
Sbjct: 378 LTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 14/82 (17%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
                G            P P +KW K +   + +      S+    + I +   ED G 
Sbjct: 217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEP--LLHIQNVDFEDEGT 271

Query: 56  YKCVATNKHGTDETNCVVIVES 77
           Y+C A N  G D     +I+ +
Sbjct: 272 YECEAENIKGRDTYQGRIIIHA 293

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 15/82 (18%)

Query: 2   QNVIKVKVGST----------KPPPTVKWYKGNRELSKRDYS---MSYSDGVVSMEIIDC 48
           ++ +K+  G             P  + +W                +S + G  ++ I   
Sbjct: 108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKT 165

Query: 49  KPEDSGEYKCVATNKHGTDETN 70
           +  D G Y C AT+       +
Sbjct: 166 EASDLGNYSCFATSHIDFITKS 187

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  144 bits (364), Expect = 7e-40
 Identities = 62/373 (16%), Positives = 115/373 (30%), Gaps = 74/373 (19%)

Query: 14  PPPTVKWYKGNREL--SKRDYSMSYSDG---VVSMEIIDC-KPEDSGEYKCVATNKHGTD 67
           P P + W + +              SDG          D  +   +  Y C+A N+ G+ 
Sbjct: 32  PMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSI 91

Query: 68  ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR-----PAPAIITTRQEIKSSYS 122
            +  V +     +  E   +    +  G+   I+  I          +     E ++ + 
Sbjct: 92  ISRDVHVRAVVAQYYEAD-VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP 150

Query: 123 SHTDDTGRTTTQMSTL----------SSNYS-SSTNNATSPSKKITRRMNSILDTDSPSR 171
               D          L            +Y   + +  T  ++                 
Sbjct: 151 GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR----------------L 194

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL- 230
           S +  + +I  P ++  P   A       +     + L    +G P P   W K  +   
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTT 254

Query: 231 -NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------- 278
              + +L+ + K    +L I++   ED G Y+C   NS+G    +  LT           
Sbjct: 255 RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP 314

Query: 279 -----PLNSSNILDLK-----------YKNGVA------SLQIQEVFPEDEGVYVCTATN 316
                      +   +            K+G A       L+I+ V  ED+G+Y C   N
Sbjct: 315 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRN 374

Query: 317 SLGTAETKCKLTV 329
              +AE   +L +
Sbjct: 375 DRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  100 bits (251), Expect = 5e-24
 Identities = 50/300 (16%), Positives = 84/300 (28%), Gaps = 66/300 (22%)

Query: 6   KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM------EIIDCKPEDS-GEYKC 58
            +          V W+    E     +  +  DG   +       I +  PED    Y+C
Sbjct: 126 LIPSFVADFVEVVSWHTDEEEN---YFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 182

Query: 59  VATNKHG--TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--------PAP 108
              ++    T  +     +   E            +       +   I         PAP
Sbjct: 183 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP 242

Query: 109 AIITTRQEIKSSYSSHTDDTGRTTTQMSTL---------SSNYS-SSTNNATSPSKKITR 158
           +    +    ++         R      TL         S  Y     N+    S +   
Sbjct: 243 SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV- 301

Query: 159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE 218
                               L     T   P         +T+D G+    +    G+P 
Sbjct: 302 --------------------L-----TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 336

Query: 219 PRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             VSW K+G+ +  S           + L+I+ V  ED+G+Y C   N   +AE   +L 
Sbjct: 337 KTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 60.0 bits (145), Expect = 3e-10
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 1   MQNVIKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVV---SMEIIDC 48
           +Q  +++ V  T          P P+ +WYK     +++   +          ++ I D 
Sbjct: 218 VQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 277

Query: 49  KPEDSGEYKCVATNKHGTDETNCVVIVES 77
             EDSG+Y CV  N  G +    V+ V +
Sbjct: 278 VVEDSGKYLCVVNNSVGGESVETVLTVTA 306

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 13  KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
            P  TV W K  + +         S+    + I   K ED G Y+C   N   + E +  
Sbjct: 334 NPIKTVSWMKDGKAIGH-------SES--VLRIESVKKEDKGMYQCFVRNDRESAEASAE 384

Query: 73  VIV 75
           + +
Sbjct: 385 LKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 24/159 (15%), Positives = 42/159 (26%), Gaps = 49/159 (30%)

Query: 189 PPQFANKLTDK-TIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILDLKYKNGVAS 246
            P F  + T++    +    ++     G+P P + W + +G  +     L     +G   
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG--K 60

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPED 306
           L       ED                                                  
Sbjct: 61  LVFPPFRAEDYRQ--------------------------------------------EVH 76

Query: 307 EGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKES 345
             VY C A N  G+  ++  + VR+  A       +KE 
Sbjct: 77  AQVYACLARNQFGSIISR-DVHVRAVVAQYYEADVNKEH 114

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  143 bits (363), Expect = 1e-39
 Identities = 67/388 (17%), Positives = 116/388 (29%), Gaps = 81/388 (20%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNREL--SKRDYSMSYSDG---VVSMEIIDCKPEDSGEYKC 58
           ++     S +  P +KW K    L     D      +G   + ++        D G Y+C
Sbjct: 40  LLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQC 99

Query: 59  VATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQE 116
            A+        +    V      +   +      + GD   ++  +   P P I   + +
Sbjct: 100 EASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQ 159

Query: 117 IKSSYSSHTDDTGRTTTQMSTL---------SSNYS-SSTNNATSPSKKITRRMNSILDT 166
              +      D+         L         S  Y  S+ N A++               
Sbjct: 160 QDLNPI--PGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST--------------- 202

Query: 167 DSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN 226
               R+ +  +  I+          F  + ++    +G+   L   V G P P  +W + 
Sbjct: 203 ----RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRG 258

Query: 227 GQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----PLNS 282
            + +   +           +L I  V  +D G Y C  T          +LT    P   
Sbjct: 259 EEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFL 316

Query: 283 SNILDLK-----------------------YKNGVA-------------SLQIQEVFPED 306
           ++  +L                         KNG               +L+I  V   D
Sbjct: 317 NHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSD 376

Query: 307 EGVYVCTATNSLGTAETKCKLTVRSTPA 334
           EG Y C A N  G A++  +L V   PA
Sbjct: 377 EGFYQCVAENEAGNAQSSAQLIVPK-PA 403

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 81.0 bits (200), Expect = 3e-17
 Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 51/201 (25%)

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKNGQPLN-SSNILDLKYKN 242
                  F ++ +D     G  + L+   + D   P + W K+G  L    +    +  N
Sbjct: 17  GGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPN 76

Query: 243 G---VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------------PLNSS---- 283
           G   + ++        DEG+Y C A+     +                     + +    
Sbjct: 77  GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMG 136

Query: 284 NILDLK-------------YKNGV----------------ASLQIQEVFPEDEGVYVCTA 314
           + + LK              KN                   +LQI  + P D GVY C+A
Sbjct: 137 DTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSA 196

Query: 315 TNSLGTAETKC-KLTVRSTPA 334
            N   T      ++ + S P 
Sbjct: 197 RNPASTRTGNEAEVRILSDPG 217

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  147 bits (373), Expect = 2e-39
 Identities = 59/379 (15%), Positives = 116/379 (30%), Gaps = 71/379 (18%)

Query: 13  KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPED------SGEYKCVATNKHGT 66
            P P + W + +         +        +     + ED      +  Y C+A N+ G+
Sbjct: 66  NPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGS 125

Query: 67  DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR-----PAPAIITTRQEIKSSY 121
             +  V +     +  E  ++    +  G+   I+  I          +     E ++ +
Sbjct: 126 IISRDVHVRAVVAQYYE-ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF 184

Query: 122 SSHTDDTGRTTTQMSTL----------SSNYSSSTNNATSPSKKITRRMNSILDTDSPSR 171
                D          L            +Y   T +  +   +++     ++ T+  S 
Sbjct: 185 PGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 244

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
           +         P   ++           KT      + L    +G P P   W K  +   
Sbjct: 245 AV--------PKVVSLAKFD------MKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTT 290

Query: 232 SSN--ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------- 278
                +L+ + K    +L I++   ED G Y+C   NS+G    +  LT           
Sbjct: 291 RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP 350

Query: 279 -----PLNSSNILDLK-----------YKNGV------ASLQIQEVFPEDEGVYVCTATN 316
                      +   +            K+G       + L+I+ V  ED+G+Y C   N
Sbjct: 351 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRN 410

Query: 317 SLGTAETKCKLTVRSTPAA 335
              +AE   +L +      
Sbjct: 411 DRESAEASAELKLGGRFDP 429

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  130 bits (327), Expect = 2e-33
 Identities = 61/382 (15%), Positives = 114/382 (29%), Gaps = 87/382 (22%)

Query: 14  PPPTVKWYKGNRELSK------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
           P P + W    ++++         Y     D V  + I      D G YKC+A +K G  
Sbjct: 457 PTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516

Query: 68  ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTR--QEIKSSYSS 123
           E +  + V      ++ ++ A   + +G+   +   +   P  +I+  R  + +  +   
Sbjct: 517 EHSAKLNVYGLPYIRQMEKKA---IVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQ 573

Query: 124 HTDDTGRTTTQMSTLSS---NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELI 180
                G    +    +S    Y   T  A +                      S   +++
Sbjct: 574 KVFPNGTLIIENVERNSDQATY---TCVAKNQEGYSA--------------RGSLEVQVM 616

Query: 181 MPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSS-NILDL 238
           + P       +      +     GQ L L   V G   P  + WT +GQ ++    I   
Sbjct: 617 VLPRIIPFAFE------EGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTS 670

Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------PLNS 282
           +     + L I+ V     G + C A N  G  +    L                    S
Sbjct: 671 RVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGS 730

Query: 283 SNILDLK-----------YKNGVA-------------------SLQIQEVFPEDEGVYVC 312
              ++ K            K                       +L +  +   +EG Y+C
Sbjct: 731 DAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLC 790

Query: 313 TATNSLGTAETKCKLTVRSTPA 334
            A N +G+  +   +       
Sbjct: 791 EAINGIGSGLSAVIMISVQAHH 812

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  128 bits (324), Expect = 6e-33
 Identities = 67/406 (16%), Positives = 104/406 (25%), Gaps = 116/406 (28%)

Query: 6   KVKVGSTKPPPTVKWYKGNRELSKRDYSMS-----YSDGVVSMEIIDCKPEDS-GEYKCV 59
            +          V W+    E                 G   + I +  PED    Y+C 
Sbjct: 161 LIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCR 218

Query: 60  ATNKHGTDETNCVVI-VESEEESKEQQELAHNFLYSGDRKYIEKHIR----------PAP 108
             ++   +             E           L   D K                 P P
Sbjct: 219 TKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP 278

Query: 109 AIITTRQEIKSSYSSHTDDTGRTTTQMSTL---------SSNYS-SSTNNATSPSKKITR 158
                +    ++         R      TL         S  Y     N+    S +   
Sbjct: 279 VFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV- 337

Query: 159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE 218
                               L     T   P         +T+D G+    +    G+P 
Sbjct: 338 --------------------L-----TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 372

Query: 219 PRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             VSW K+G+ +  S           + L+I+ V  ED+G+Y C   N   +AE   +L 
Sbjct: 373 KTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 422

Query: 279 ----------------------------------------------PLNSSN---ILDLK 289
                                                          + +++   +    
Sbjct: 423 LGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYV 482

Query: 290 YKNG--VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
             NG  V+ L I  V   D G+Y C A + +G AE   KL V   P
Sbjct: 483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP 528

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  109 bits (273), Expect = 3e-26
 Identities = 44/294 (14%), Positives = 87/294 (29%), Gaps = 45/294 (15%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIID-CKPEDSG 54
             +  G T          P  ++ W + NR L        + +G  ++ I +  +  D  
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG--TLIIENVERNSDQA 593

Query: 55  EYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIIT 112
            Y CVA N+ G      + +                    G    +   +     P  I 
Sbjct: 594 TYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNID 653

Query: 113 TRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNN------ATSPSKKITRRMNSILDT 166
              + ++        T R   + S L+     +++       A + +          +  
Sbjct: 654 WTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV-- 711

Query: 167 DSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN 226
                                 PP++  + TDK    G    +     G P+P+V+W K 
Sbjct: 712 --------------------YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKA 751

Query: 227 GQPLNSSNI---LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 277
                            +    +L +  +   +EG Y+C A N +G+  +   +
Sbjct: 752 VGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  106 bits (266), Expect = 2e-25
 Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 46/191 (24%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN---ILDLKYKNG-- 243
           PP       ++T++ G  + L  V  G+P P +SW  +G+ + +++   +      NG  
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL--------TPLNSSNI-----LDLK- 289
           V+ L I  V   D G+Y C A + +G AE   KL          +    I     L +  
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTC 548

Query: 290 ------------YKNGVA-------------SLQIQEV-FPEDEGVYVCTATNSLG-TAE 322
                        ++  A             +L I+ V    D+  Y C A N  G +A 
Sbjct: 549 PVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSAR 608

Query: 323 TKCKLTVRSTP 333
              ++ V   P
Sbjct: 609 GSLEVQVMVLP 619

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 74.6 bits (183), Expect = 8e-15
 Identities = 35/230 (15%), Positives = 63/230 (27%), Gaps = 65/230 (28%)

Query: 182 PPDTAMTPPQFANKLTDK-TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY 240
           PPD     P F  + T++    +    ++     G+P P + W ++       ++  L+ 
Sbjct: 31  PPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTA-VGDVPGLRQ 89

Query: 241 KNGVASLQIQEVFPED------EGVYVCTATNSLGTAET--------------------- 273
            +    L       ED        VY C A N  G+  +                     
Sbjct: 90  ISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEH 149

Query: 274 ---------KCKLTPLNSSNILDLK-YKNGVA------------------SLQIQEVFPE 305
                    KC +    +  +  +  + +                      L I+EV PE
Sbjct: 150 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE 209

Query: 306 D-EGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFFAI 354
           D    Y C   + L           R +            S   P+  ++
Sbjct: 210 DGYKSYQCRTKHRLTGET-------RLSATKGRLVITEPISSAVPKVVSL 252

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 71.9 bits (176), Expect = 7e-14
 Identities = 34/264 (12%), Positives = 66/264 (25%), Gaps = 53/264 (20%)

Query: 43  MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE------EESKEQQELAHNFLYSGD 96
           M + + + +    +  VA    G+           +      +E   + + +     +  
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFS-----NST 55

Query: 97  RKYIEKHIR--PAPAIITTR---QEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNN--- 148
              IE      P P II  R     +          +          + +Y    +    
Sbjct: 56  GAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVY 115

Query: 149 ---ATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQ 205
              A +    I  R   +                      A+    +   +  + +  G 
Sbjct: 116 ACLARNQFGSIISRDVHV---------------------RAVVAQYYEADVNKEHVIRGN 154

Query: 206 CLDLSAVVK---GDPEPRVSWTKNGQPLNSSNILD----LKYKNGVASLQIQEVFPED-E 257
              +  ++     D    VSW  + +             L   +G   L I+EV PED  
Sbjct: 155 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPEDGY 212

Query: 258 GVYVCTATNSLGTAETKCKLTPLN 281
             Y C   + L             
Sbjct: 213 KSYQCRTKHRLTGETRLSATKGRL 236

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 18/86 (20%)

Query: 4   VIKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG 54
              V  G            P  TV W K  + +         S+ V  + I   K ED G
Sbjct: 352 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH-------SESV--LRIESVKKEDKG 402

Query: 55  EYKCVATNKHGTDETNCVVIVESEEE 80
            Y+C   N   + E +  + +    +
Sbjct: 403 MYQCFVRNDRESAEASAELKLGGRFD 428

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 62.6 bits (152), Expect = 7e-11
 Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 2/76 (2%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
            +   V     P  + W    + +       +         + I   +   +G + C A 
Sbjct: 638 TLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHAR 697

Query: 62  NKHGTDETNCVVIVES 77
           N  G  +    + V  
Sbjct: 698 NLAGHQQFTTPLNVYV 713

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 17/150 (11%), Positives = 35/150 (23%), Gaps = 52/150 (34%)

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNS------------------------ 282
           + +     +   ++   A  + G+          +                         
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 283 ---------------------SNILDLKYKNGVASLQIQEVFPED------EGVYVCTAT 315
                                 ++  L+  +    L       ED        VY C A 
Sbjct: 61  CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120

Query: 316 NSLGTAETKCKLTVRSTPAANLGKSPSKES 345
           N  G+  ++  + VR+  A       +KE 
Sbjct: 121 NQFGSIISR-DVHVRAVVAQYYEADVNKEH 149

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  141 bits (356), Expect = 7e-39
 Identities = 73/373 (19%), Positives = 118/373 (31%), Gaps = 80/373 (21%)

Query: 14  PPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHGTDETNC 71
           P P ++W     ++    D+  S  DG  S+ I +  K +D+G Y+C+ATN  GT  +  
Sbjct: 36  PKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTYQCIATNSFGTIVSRE 93

Query: 72  VVIVESEEESKEQQELAHNFLYSGDRKYIEKHI---RPAPAIITTRQEIKSSYSSHTDDT 128
             +  +  E+ + +  +   +  G    +           +      E          D 
Sbjct: 94  AKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYP-----SYQDN 148

Query: 129 GRTTTQMS-TL---------SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKE 178
            R  +Q +  L           NY+    N  +  K +      IL  D           
Sbjct: 149 RRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE---- 204

Query: 179 LIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNSSNILD 237
                     P            + G  + L     G+P P + W + +G+P+       
Sbjct: 205 ----------PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA--- 251

Query: 238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------PLN 281
            +       L+I     ED G Y C A NS G    K +LT                 + 
Sbjct: 252 -RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAME 310

Query: 282 SSNILDLK-----------YKNGVA------------SLQIQEVFPEDEGVYVCTATNSL 318
            S   + K            KNG              +L I  V   D G+Y C A N  
Sbjct: 311 ESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKH 370

Query: 319 GTAETKCKLTVRS 331
           G   +  +L+V +
Sbjct: 371 GVIFSSAELSVIA 383

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 88.0 bits (218), Expect = 1e-19
 Identities = 42/215 (19%), Positives = 68/215 (31%), Gaps = 60/215 (27%)

Query: 188 TPPQFANKLTDKTI---DDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
           + P F  + +        + + + LS  VKG+P+P + W  NG  ++          +G 
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG- 62

Query: 245 ASLQIQEVF-PEDEGVYVCTATNSLGTAET------------------------------ 273
            SL I      +D G Y C ATNS GT  +                              
Sbjct: 63  -SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 121

Query: 274 -KCKLT---------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 317
             C                  P    N   +  + G  +L I +V   D G Y C  TN+
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNT 179

Query: 318 LGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFF 352
           +   +      V   P   + ++     +  P+  
Sbjct: 180 VTNHK------VLGPPTPLILRNDGVMGEYEPKIE 208

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 62.2 bits (151), Expect = 6e-11
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
           I V +  +         +P PT +W K    L  RD  +    G  ++ I      D+G 
Sbjct: 305 IHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDR-IQIEQG--TLNITIVNLSDAGM 361

Query: 56  YKCVATNKHGTDETNCVVIVESE 78
           Y+CVA NKHG   ++  + V +E
Sbjct: 362 YQCVAENKHGVIFSSAELSVIAE 384

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  137 bits (347), Expect = 3e-38
 Identities = 44/290 (15%), Positives = 84/290 (28%), Gaps = 33/290 (11%)

Query: 13  KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
            P     W K            +        M   D   +D G Y C  T+  G   +  
Sbjct: 29  TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88

Query: 72  VVIVESEEESKE-----------QQELAHNFLYSGDRKYIEK--HIRPAPAIITTR--QE 116
           +   E +                + ELA   L  G  ++  +   +     +      +E
Sbjct: 89  IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE 148

Query: 117 IKSSYS---SHTDDTGRTTTQMSTLSS----NYSSSTNNATSPSKKITRRMNSILDTDSP 169
           I            +TG     M  L       Y+    +  + +        +++     
Sbjct: 149 IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHS------TVVLVGDV 202

Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKNGQ 228
            +      E           P F   L+   +     + L   V     E  + W K+ +
Sbjct: 203 FKKLQKEAEFQRQEWIRKQGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDER 261

Query: 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            ++        +K+G+ +L I E   +D G+Y     +  G  +++ KL 
Sbjct: 262 EISVDE--KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  113 bits (283), Expect = 5e-29
 Identities = 29/227 (12%), Positives = 56/227 (24%), Gaps = 63/227 (27%)

Query: 168 SPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTI-DDGQCLDLSAVVKGDPEPRVSWTKN 226
           S        K L+        P           I + GQ        K     +V++  N
Sbjct: 86  SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN 145

Query: 227 GQPLNSSNILDLKY--KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSN 284
            + +       +      G+  + ++++  EDEG Y     +   T  +   L       
Sbjct: 146 EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 205

Query: 285 ILDLK----------------------------------------------YKNG----- 293
           +                                                  YK+      
Sbjct: 206 LQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV 265

Query: 294 ---------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331
                    + +L I E   +D G+Y     +  G  +++ KL   +
Sbjct: 266 DEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  109 bits (274), Expect = 9e-28
 Identities = 29/224 (12%), Positives = 62/224 (27%), Gaps = 62/224 (27%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
            P     + +   D    L+        P+   SW+K+      S  L+++ K     + 
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKC----------------KLTPLNSSNILDLK--- 289
            +++  +D G+Y C  T++ G A +                  K   +   + L ++   
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121

Query: 290 ---------------------YKNG------------------VASLQIQEVFPEDEGVY 310
                                  N                   +  + ++++  EDEG Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181

Query: 311 VCTATNSLGTAETKCKLTV---RSTPAANLGKSPSKESDKAPRF 351
                +   T  +   L     +        +       + P F
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 82.7 bits (204), Expect = 5e-18
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
           ++K KV + K    + WYK  RE+S  +    + DG+ ++ I +   +D+G Y+ +  + 
Sbjct: 240 LLKCKVANIKKETHIVWYKDEREISVDEK-HDFKDGICTLLITEFSKKDAGIYEVILKDD 298

Query: 64  HGTDETNCVVIVES 77
            G D++   ++ E+
Sbjct: 299 RGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 77.3 bits (190), Expect = 3e-16
 Identities = 13/92 (14%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 2   QNVIKVKVGSTKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 58
           Q    ++         V +    +E+    K    +  + G++ M +   + ED G Y  
Sbjct: 124 QVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTF 183

Query: 59  VATNKHGTDETNCVVIVESEEESKEQQELAHN 90
              +   T+ +  V++ +  ++ +++ E    
Sbjct: 184 QLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQ 215

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  133 bits (336), Expect = 9e-38
 Identities = 38/189 (20%), Positives = 60/189 (31%), Gaps = 47/189 (24%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
            P    ++ D T   G+   LS  + G P P + W + G+ L  S    +       +L 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT------------------------------ 278
           +     EDEGVY C ATN +G  ET  KL                               
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126

Query: 279 ----------------PLNSSNILDLKYKNGVASLQIQEV-FPEDEGVYVCTATNSLGTA 321
                            L +S  + ++       L ++ V      G Y    +N  GT 
Sbjct: 127 YIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186

Query: 322 ETKCKLTVR 330
           +    + ++
Sbjct: 187 DAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 81.3 bits (201), Expect = 2e-18
 Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 13  KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
           +P P +KWY+  +EL   R Y MS      ++ ++  + ED G Y C+ATN+ G  ET+ 
Sbjct: 34  RPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSS 93

Query: 72  VVIVESE 78
            +++++ 
Sbjct: 94  KLLLQAT 100

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 75.1 bits (185), Expect = 3e-16
 Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 1   MQNVIKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDC-K 49
           ++      VGST         +P P + W+ G + L +  + ++  ++    + + +  +
Sbjct: 109 LKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQR 168

Query: 50  PEDSGEYKCVATNKHGTDETNCVVIVE 76
              +G+YK   +N  GT +    V ++
Sbjct: 169 KTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  137 bits (346), Expect = 3e-37
 Identities = 41/385 (10%), Positives = 93/385 (24%), Gaps = 82/385 (21%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
           ++V V ++             +  W   +  L+ + +    + GVVSM I+      +GE
Sbjct: 58  VEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGE 117

Query: 56  YKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITT 113
           Y     ++         V + +      ++     F    ++  +       P P +   
Sbjct: 118 YLLFIQSEATNYTILFTVSIRNTLLYTLRRP---YFRKMENQDALVCISESVPEPIVEWV 174

Query: 114 RQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSR 173
             + +               +        +     A +   +   R+ +I          
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI---------- 224

Query: 174 STTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNS 232
                                 L    +  G+ L +    V  +    ++W    + L  
Sbjct: 225 -------------DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271

Query: 233 SNILDLKYKNG------VASLQIQEVFPEDEGVYVCTATNSLGTAET------------- 273
            N  ++   +       +    +  V   D G Y C+++     +               
Sbjct: 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATN 331

Query: 274 ---------------KCKLTPLNSSNIL----------DLKYKNGVASLQIQEVFPEDEG 308
                            +                    + K  +   S+          G
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPG 391

Query: 309 VYVCTATNSLGTAETKCKLTVRSTP 333
            Y+  A N          L +RS  
Sbjct: 392 EYIFHAENDDAQFTKMFTLNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 85.5 bits (211), Expect = 1e-18
 Identities = 24/186 (12%), Positives = 41/186 (22%), Gaps = 45/186 (24%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
                 +     +D    + L  +V         W      LN     DL    GV S+ 
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMV 106

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK------------------- 289
           I ++     G Y+    +          ++  N+      +                   
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESV 166

Query: 290 -------YKNGV---------------ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL 327
                                          + E+F  D     C A N LG   T+   
Sbjct: 167 PEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNELGRECTRLFT 223

Query: 328 TVRSTP 333
              +  
Sbjct: 224 IDLNQT 229

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 70.1 bits (171), Expect = 2e-13
 Identities = 27/203 (13%), Positives = 46/203 (22%), Gaps = 57/203 (28%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
               +  +       + Q   L  + +  PEP V W        S               
Sbjct: 139 NTLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKE-EK 196

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------------------- 278
            + E+F  D     C A N LG   T+                                 
Sbjct: 197 VLHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVH 253

Query: 279 --------------PLNSSNILDLKYKNG------VASLQIQEVFPEDEGVYVCTATNSL 318
                          L   N  ++   +       +    +  V   D G Y C+++   
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313

Query: 319 GTAETKCKLTVRSTPAANLGKSP 341
             +     +T+      N   S 
Sbjct: 314 SQSAL---VTIVEKGFINATNSS 333

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 55.5 bits (133), Expect = 1e-08
 Identities = 14/143 (9%), Positives = 33/143 (23%), Gaps = 44/143 (30%)

Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK--------- 289
             K  + + +  +        Y   + +        C L P +S  + +           
Sbjct: 9   VIKCVLINHKNNDSSVGKSSSYPMVSESPEDLG---CALRPQSSGTVYEAAAVEVDVSAS 65

Query: 290 -----------------YKNG---------------VASLQIQEVFPEDEGVYVCTATNS 317
                                               V S+ I ++     G Y+    + 
Sbjct: 66  ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125

Query: 318 LGTAETKCKLTVRSTPAANLGKS 340
                    +++R+T    L + 
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRP 148

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  130 bits (329), Expect = 1e-36
 Identities = 49/206 (23%), Positives = 80/206 (38%), Gaps = 56/206 (27%)

Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
           +T  TPP+F     D+T   G          GDP P++ W K G+ +++     +++ +G
Sbjct: 1   ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60

Query: 244 -VASLQIQEV-FPEDEGVYVCTATNSLGTAETKCKLT----------------------- 278
             + L+IQ +  P DE +Y C A+N++G      +LT                       
Sbjct: 61  SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120

Query: 279 ---------------------------PLNSSN---ILDLKYKNGVASLQIQEVFPEDEG 308
                                      P+++SN    +       + +LQI++    D+G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQG 180

Query: 309 VYVCTATNSLGTAET-KCKLTVRSTP 333
            Y C ATNS GT  +    L VR T 
Sbjct: 181 KYECVATNSAGTRYSAPANLYVRGTK 206

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 95.3 bits (237), Expect = 3e-23
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
           S ST   ++         P        K ++  +   +     G+P+P ++W K+  P++
Sbjct: 91  SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVD 150

Query: 232 SSN---ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLT 278
           +SN    +       + +LQI++    D+G Y C ATNS GT  +    L 
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLY 201

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 14  PPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIID--CKPEDSGEYKCVATNKHGTDETN 70
           P P + W K  +++S  R   + + DG  S+  I     P D   Y+CVA+N  G    +
Sbjct: 34  PRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVS 93

Query: 71  CVVIVESEEESKEQ 84
             + V  E++    
Sbjct: 94  TRLTVLREDQIPRG 107

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 14/94 (14%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPE 51
             V+   T          P P + W+K    +    +        S+ + +++I   +  
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES 177

Query: 52  DSGEYKCVATNKHGTDET-NCVVIVESEEESKEQ 84
           D G+Y+CVATN  GT  +    + V   +     
Sbjct: 178 DQGKYECVATNSAGTRYSAPANLYVRGTKHHHHH 211

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  129 bits (326), Expect = 2e-36
 Identities = 36/193 (18%), Positives = 55/193 (28%), Gaps = 51/193 (26%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYKNGVAS 246
            P F  +L +  +       L   V G P+P V W + G+ + +        ++K G   
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------PLNSSNILDLK-------- 289
           L I  V  +D  VY   ATN  G+      L          P     +  +         
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 290 ---------------YKNGV-----------------ASLQIQEVFPEDEGVYVCTATNS 317
                           K                    + +    V  +D G YV  A N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 318 LGTAETKCKLTVR 330
            G  +   +L V 
Sbjct: 184 FGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 1/108 (0%)

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL- 230
           S S T  L +     +  P+    +       G+ + +     G P+P ++W K    + 
Sbjct: 87  SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID 146

Query: 231 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           N+ +   +  ++  + +    V  +D G YV  A N  G  +   +L 
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 77.1 bits (190), Expect = 7e-17
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 13  KPPPTVKWYKGNREL--SKRDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
            P P VKWY+  +E+      Y +  +  G   + I     +D+  Y+  ATN+ G+   
Sbjct: 31  HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90

Query: 70  NCVVIVESEEE 80
              + VE   +
Sbjct: 91  TASLEVEVPAK 101

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 74.0 bits (182), Expect = 8e-16
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIID-CKPEDS 53
           +    G           KP P + W KG   +     Y +  +    S+   +  + +D+
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDA 173

Query: 54  GEYKCVATNKHGTDETNCVVIVE 76
           G Y   A N+ G D+    + V 
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVA 196

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  136 bits (342), Expect = 2e-35
 Identities = 59/422 (13%), Positives = 113/422 (26%), Gaps = 104/422 (24%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
            I  K     PPP +KWYK    L       +       + I++    D+G Y  + TN 
Sbjct: 349 RIPAKYLGY-PPPEIKWYKNGIPLESNHTIKAGH----VLTIMEVSERDTGNYTVILTNP 403

Query: 64  HGTDETNCVVIVESEEE---SKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIK 118
              ++ + VV +         ++      +    G  + +   +   P P  I    +++
Sbjct: 404 ISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLE 463

Query: 119 SSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKE 178
              ++        T                      KI    N     +  +++ ST   
Sbjct: 464 EECANEPSQAVSVTNPYPCEEWRSVEDFQG----GNKIEVNKNQFALIEGKNKTVSTLVI 519

Query: 179 LIMPPDTAM--------------------TPPQFANKLTDKTIDDGQCLDLSAVVKGDPE 218
                 +A+                    T         D    + + + L         
Sbjct: 520 Q-AANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTF 578

Query: 219 PRVSWTKNGQPLNSSNILDL--------------------KYKNGVASLQIQEVFPEDEG 258
             ++W K G      ++ +L                       N +  ++++    +D+G
Sbjct: 579 ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG 638

Query: 259 VYVCTATNSLGTAETKCKLT---------------------------------------- 278
            YVC A +                                                    
Sbjct: 639 DYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI 698

Query: 279 -------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331
                   L   +   +  K+G  +L I+ V  EDEG+Y C A + LG A+ +    +  
Sbjct: 699 MWFKDNETLVEDS--GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756

Query: 332 TP 333
             
Sbjct: 757 AQ 758

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  115 bits (288), Expect = 2e-28
 Identities = 48/395 (12%), Positives = 98/395 (24%), Gaps = 88/395 (22%)

Query: 5   IKVKVGST-------KPPPTVKWYKGNRELSKRDYSMSYSDG--VVSMEIIDCKPEDSGE 55
           + +K  +T       +      W        +R      SDG    ++ I      D+G 
Sbjct: 41  LTIKANTTLQITCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGA 100

Query: 56  YKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQ 115
           YKC              V            +                  +     IT  +
Sbjct: 101 YKCFYRETDLASVIYVYVQDYRSPFIASVSD------------------QHGVVYITENK 142

Query: 116 EIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS------- 168
                       +    +  +           N  S   K    + S + + +       
Sbjct: 143 NKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEA 202

Query: 169 --PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN 226
                S  +   +++            +      +  G+ L L+   + +    + +   
Sbjct: 203 KINDESYQSIMYIVVV-VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE 261

Query: 227 GQPLNSSNILDLK----------YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 276
                  +   +            K  +++L I  V   D+G+Y C A++ L T +    
Sbjct: 262 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTF 321

Query: 277 LTPLNSSNI-----------------LDLK-------------YKNGVA----------- 295
           +       +                 + +              YKNG+            
Sbjct: 322 VRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH 381

Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
            L I EV   D G Y    TN +   +    +++ 
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV 416

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  104 bits (261), Expect = 8e-25
 Identities = 40/290 (13%), Positives = 82/290 (28%), Gaps = 37/290 (12%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
           VI      +    ++      +        +S+ D      I       +G   C A   
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMISYAGMVFCEAKIN 205

Query: 64  HGTDETNCVVIVESEEES--KEQQELAHNFLYSGDRKYIEKHI--RPAPAIITTRQEIKS 119
             + ++   ++V                  L  G++  +           I         
Sbjct: 206 DESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI--------- 256

Query: 120 SYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS----------- 168
                  +   +  Q   L +    + + +       T  ++ +  +D            
Sbjct: 257 ---DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 313

Query: 169 PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ 228
            ++  ST   +   P         +   +      G+ + + A   G P P + W KNG 
Sbjct: 314 MTKKNSTFVRVHEKP----FVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGI 369

Query: 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           PL S++ +   +      L I EV   D G Y    TN +   +    ++
Sbjct: 370 PLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 92.5 bits (229), Expect = 1e-20
 Identities = 53/373 (14%), Positives = 93/373 (24%), Gaps = 93/373 (24%)

Query: 2   QNVIKVKVGST---------KPPPTVKWYK-------GNRELSKRDYSMS----YSDGVV 41
            + I++ VG           +    + +          +++L  RD            + 
Sbjct: 231 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 290

Query: 42  SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV-ESEEESKEQQELAHNFLYSGDRKYI 100
           ++ I      D G Y C A++   T + +  V V E    +      +      G+R  I
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 350

Query: 101 EKHIR--PAPAI--------ITTRQEIKSSY-----SSHTDDTGRTTTQMSTLSSNYS-S 144
                  P P I        + +   IK+ +          DTG           NY+  
Sbjct: 351 PAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTG-----------NYTVI 399

Query: 145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDD- 203
            TN  +   +     +                            PPQ   K     +D  
Sbjct: 400 LTNPISKEKQSHVVSL------------------------VVYVPPQIGEKSLISPVDSY 435

Query: 204 --GQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVY 260
             G    L+  V   P P  + W    +   ++              +      + +G  
Sbjct: 436 QYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGN 495

Query: 261 VCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 320
                                + N   L          +         +Y C A N +G 
Sbjct: 496 KIE-----------------VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR 538

Query: 321 AETKCKLTVRSTP 333
            E      V   P
Sbjct: 539 GERVISFHVTRGP 551

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 88.3 bits (218), Expect = 3e-19
 Identities = 24/200 (12%), Positives = 48/200 (24%), Gaps = 50/200 (25%)

Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKY 240
            P  ++  P+ + +    TI     L ++   +G  +    W  N         + +   
Sbjct: 24  LPSVSLDLPRLSIQKDILTIKANTTLQIT--CRGQRDLDWLWPNNQSGSEQRVEVTECSD 81

Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAET--------------------------- 273
                +L I +V   D G Y C    +   +                             
Sbjct: 82  GLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITEN 141

Query: 274 -------KCKLTPLNSSNILDLKYKNGV-------------ASLQIQEVFPEDEGVYVCT 313
                   C  +  N +  L  +Y                     I        G+  C 
Sbjct: 142 KNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCE 201

Query: 314 ATNSLGTAETKCKLTVRSTP 333
           A  +  + ++   + V    
Sbjct: 202 AKINDESYQSIMYIVVVVGY 221

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 75.6 bits (185), Expect = 5e-15
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
               +G +          PPP + W+K N  L + D  +   DG  ++ I   + ED G 
Sbjct: 676 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE-DSGIVLKDGNRNLTIRRVRKEDEGL 734

Query: 56  YKCVATNKHGTDETNCVVIVESEEE--SKEQQELAHNF 91
           Y C A +  G  +     I+E  +E  + E+    H+ 
Sbjct: 735 YTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHHHHH 772

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 62.1 bits (150), Expect = 9e-11
 Identities = 12/124 (9%), Positives = 25/124 (20%), Gaps = 39/124 (31%)

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLTP----------------------------- 279
           +Q        +++C  T +         L                               
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLD 60

Query: 280 ----------LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
                          + +        +L I +V   D G Y C    +   +     +  
Sbjct: 61  WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120

Query: 330 RSTP 333
             +P
Sbjct: 121 YRSP 124

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 59.8 bits (144), Expect = 5e-10
 Identities = 27/277 (9%), Positives = 69/277 (24%), Gaps = 44/277 (15%)

Query: 50  PEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPA 109
                 + CV T        +  + +      K+   +      +     I    +    
Sbjct: 6   LLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIK-----ANTTLQITCRGQRDLD 60

Query: 110 IITTRQEIKSSYSSH-TDDTGRTTTQMSTLSS-------NYS-SSTNNATSPSKKITRRM 160
            +    +  S      T+ +     +  T+          Y         +    +    
Sbjct: 61  WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY--- 117

Query: 161 NSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP- 219
             + D  SP                 +      + +   T +  + + +  +        
Sbjct: 118 --VQDYRSPF----------------IASVSDQHGVVYITENKNKTVVIPCLGSISNLNV 159

Query: 220 -RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
              +     + +   N +    K G     I        G+  C A  +  + ++   + 
Sbjct: 160 SLCARYPEKRFVPDGNRISWDSKKG---FTIPSYMISYAGMVFCEAKINDESYQSIMYIV 216

Query: 279 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT 315
            +    I D+     ++     E+   ++ V  CTA 
Sbjct: 217 VVVGYRIYDVV----LSPSHGIELSVGEKLVLNCTAR 249

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score =  120 bits (302), Expect = 6e-34
 Identities = 25/96 (26%), Positives = 37/96 (38%)

Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN 242
           P T    P+   ++    +  GQ       V+  P   V W  NG  L  S+ +     +
Sbjct: 2   PFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61

Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           GV +L+I +   +D G Y    TN  G A     L 
Sbjct: 62  GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 95.8 bits (239), Expect = 1e-24
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSG 54
            +V  G           KP   VKWY    EL +      + + GV+++EI+DC  +DSG
Sbjct: 18  HRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSG 77

Query: 55  EYKCVATNKHGTDETNCVVIVESEE 79
            Y+ V TN  G       + V   +
Sbjct: 78  TYRAVCTNYKGEASDYATLDVTGGD 102

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score =  119 bits (301), Expect = 7e-34
 Identities = 27/91 (29%), Positives = 39/91 (42%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
           + P     L D T+        +    G+P P   WTK+G+ +       L    G   L
Sbjct: 5   SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           +I +    D G+Y CT  NS G+  + CKLT
Sbjct: 65  EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 84.3 bits (209), Expect = 1e-20
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 13 KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
          +P PT  W K  + +     Y +S   G   +EI      DSG Y C   N  G+  ++C
Sbjct: 33 EPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC 92

Query: 72 VVIVES 77
           + +++
Sbjct: 93 KLTIKA 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score =  116 bits (293), Expect = 1e-32
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
                 P F++ L D  + +GQ   L   V+G P PR++W  NGQP+  +       + G
Sbjct: 6   SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAG 62

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           VA L IQ+  PED G Y C A N+LG       +T
Sbjct: 63  VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 76.6 bits (189), Expect = 8e-18
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
           P P + W    + +  +    +   GV  + I D  PED G Y C+A N  G    +  
Sbjct: 38 TPVPRITWLLNGQPI--QYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAW 95

Query: 73 VIV 75
          V V
Sbjct: 96 VTV 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score =  115 bits (290), Expect = 3e-32
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN-SSNILDLKYKNGVAS 246
            PP F   L D+++ +GQ + +S  V+G+P+P VSW +N QP+         + + G+  
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           L+I      D G Y C A N  G  + + +L 
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLE 95

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 86.2 bits (214), Expect = 3e-21
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 13 KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
          +P P V W +  + +   +R ++     G+  + I+  +  D+G Y C A N++G  +  
Sbjct: 32 EPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCE 91

Query: 71 CVVIVESE 78
            + V  E
Sbjct: 92 ARLEVRGE 99

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  121 bits (305), Expect = 3e-32
 Identities = 35/205 (17%), Positives = 68/205 (33%), Gaps = 41/205 (20%)

Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP 229
             +      ++         P        K ++  +   +     G+P+P ++W K+  P
Sbjct: 89  EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLP 148

Query: 230 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-------------- 275
           ++ S       +    +LQI+     D+G Y C ATNS G   +                
Sbjct: 149 VDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRF 208

Query: 276 KLTPLNSS----NILDLK-------------YKNG----------VASLQIQEVFPEDEG 308
            + P++        +++               +            V    ++    +D  
Sbjct: 209 SILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSA 268

Query: 309 VYVCTATNSLGTAETKCKLTVRSTP 333
            Y C A +SLG  E   ++TV+S P
Sbjct: 269 NYTCVAMSSLGVIEAVAQITVKSLP 293

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  114 bits (287), Expect = 1e-29
 Identities = 55/221 (24%), Positives = 79/221 (35%), Gaps = 66/221 (29%)

Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KN 242
           +T   PP+F  +  D+    G          GDP+PRV+W K G+ +NS     +++ ++
Sbjct: 1   ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60

Query: 243 GVASLQIQEVF-PEDEGVYVCTATNSLGTAETKCKLT----------------------- 278
             A L+IQ +  P DE VY C A NS+G      KLT                       
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120

Query: 279 ---------------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYV 311
                                      P++ S       +    +LQI+     D+G Y 
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180

Query: 312 CTATNSLGTAETK-CKLTVRSTPAANLGKSPSKESDKAPRF 351
           C ATNS G   +    L VR               + APRF
Sbjct: 181 CVATNSAGVRYSSPANLYVR-------------VQNVAPRF 208

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 14/82 (17%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
            ++  G            P P VKW +G  +L+  D  M     V    +     +DS  
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD-MPVGRNV----LELTDVKDSAN 269

Query: 56  YKCVATNKHGTDETNCVVIVES 77
           Y CVA +  G  E    + V+S
Sbjct: 270 YTCVAMSSLGVIEAVAQITVKS 291

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 14  PPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIID--CKPEDSGEYKCVATNKHGTDETN 70
           P P V W K  +++ S+R  ++ + +   ++  I     P D   Y+CVA N  G    +
Sbjct: 34  PKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVH 93

Query: 71  CVVIVESEEESKE 83
             + V  E++   
Sbjct: 94  AKLTVLREDQLPS 106

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 13  KPPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
            P P + W+K    +               +++I   +  D G+Y+CVATN  G   +
Sbjct: 135 NPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYS 192

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score =  115 bits (290), Expect = 4e-32
 Identities = 25/90 (27%), Positives = 39/90 (43%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
             +   K    T+ +G+    S    G+P P V+W + GQ L++S    +      ++ +
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           I  V   DEG Y     NS G  E +  LT
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAEFTLT 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 82.0 bits (203), Expect = 1e-19
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG 54
           + V  G +         +P PTV W +  + L +   + ++ +    + EI   +  D G
Sbjct: 24  MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEG 83

Query: 55  EYKCVATNKHGTDETNCVVIVE 76
            Y  V  N  G  E    + ++
Sbjct: 84  NYSVVVENSEGKQEAEFTLTIQ 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score =  114 bits (287), Expect = 1e-31
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
            P     L ++T   G+ +++S    G+P P++ W K+ + L   +   +  K+G  +L 
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 67

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           I+ V  EDEG+Y C A + LG A+ +    
Sbjct: 68  IRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 74.7 bits (184), Expect = 6e-17
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
               +G +          PPP + W+K N  L   D  +   DG  ++ I   + ED G 
Sbjct: 20  QTTSIGESIEVSCTASGNPPPQIMWFKDNETLV-EDSGIVLKDGNRNLTIRRVRKEDEGL 78

Query: 56  YKCVATNKHGTDETNCVVIVESEEE 80
           Y C A +  G  +     I+E  +E
Sbjct: 79  YTCQACSVLGCAKVEAFFIIEGAQE 103

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  124 bits (311), Expect = 1e-31
 Identities = 43/367 (11%), Positives = 94/367 (25%), Gaps = 73/367 (19%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
              +  W   +  L+ + +    + GVVSM I+      +GEY     ++         V
Sbjct: 76  GNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135

Query: 74  IVESEEESKEQQELAHNFLYSGDRKYIEKHI--RPAPAIITTRQEIKSSYSSHTDDTGRT 131
            + +      ++     F    ++  +       P P +     + +             
Sbjct: 136 SIRNTLLYTLRRP---YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVK 192

Query: 132 TTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQ 191
             +        +     A +   +   R+ +I    +P             P   +    
Sbjct: 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQ---------TTLPQLFLKV-- 241

Query: 192 FANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG------V 244
                       G+ L +    V  +    ++W    + L   N  ++   +       +
Sbjct: 242 ------------GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI 289

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAET-----KCKLTPLNSSNILDLK---------- 289
               +  V   D G Y C+++     +       K  +   NSS   ++           
Sbjct: 290 LFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVR 349

Query: 290 -----------YKNGVA------------SLQIQEVFPEDEGVYVCTATNSLGTAETKCK 326
                        +  +            S+          G Y+  A N          
Sbjct: 350 FKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFT 409

Query: 327 LTVRSTP 333
           L +R  P
Sbjct: 410 LNIRRKP 416

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  114 bits (287), Expect = 2e-28
 Identities = 59/385 (15%), Positives = 98/385 (25%), Gaps = 98/385 (25%)

Query: 11  STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            + P P V+W   + +          S  VV  E          + +C A N+ G + T 
Sbjct: 164 ESVPEPIVEWVLCDSQGESCK---EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR 220

Query: 71  CVVIVESEEESKEQQELAHNFLYSGDRKYIE---KHIRPAPAII----TTRQEIKSSYSS 123
              I  ++     Q  L   FL  G+  +I     H+     +         E  + +  
Sbjct: 221 LFTIDLNQ---TPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEM 277

Query: 124 HTDDTGRTTTQMSTL---------SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRS 174
            T  T RT  ++            +  Y+ S++                        S+S
Sbjct: 278 STYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK---------------------HPSQS 316

Query: 175 TTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN 234
               ++       T         D  ID  +    S   K  P+ R +WT + +      
Sbjct: 317 ALVTIVEKGFINATNSS-----EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ 371

Query: 235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE---------------------- 272
               K  +   S+          G Y+  A N                            
Sbjct: 372 ----KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQA 427

Query: 273 --------------TKCKLTPLNSSNILDLKYKNGVAS----------LQIQEVFPEDEG 308
                          KC     N +  +     N  A+            +         
Sbjct: 428 SCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGF 487

Query: 309 VYVCTATNSLGTAETKCKLTVRSTP 333
           +  C A NSLGT+     L      
Sbjct: 488 LVKCCAYNSLGTSCETILLNSPGPF 512

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 79.4 bits (195), Expect = 2e-16
 Identities = 26/199 (13%), Positives = 49/199 (24%), Gaps = 40/199 (20%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
                 +     +D    + L  +V         W      LN     DL    GV S+ 
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMV 106

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT---------------PLNSSNIL------- 286
           I ++     G Y+    +          ++                + + + L       
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESV 166

Query: 287 ----------------DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTV 329
                             +    V   + + +         C A N LG   T+   + +
Sbjct: 167 PEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL 226

Query: 330 RSTPAANLGKSPSKESDKA 348
             TP   L +   K  +  
Sbjct: 227 NQTPQTTLPQLFLKVGEPL 245

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 75.1 bits (184), Expect = 5e-15
 Identities = 38/299 (12%), Positives = 72/299 (24%), Gaps = 61/299 (20%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSME------IIDCKPEDSGEY 56
            I+ K         + W   N+ L +   + MS      +M       +      D+G Y
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305

Query: 57  KCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTR 114
            C ++          +V       +   ++     +   +        +  P      T 
Sbjct: 306 TCSSSKHPSQSALVTIVEKGFINATNSSEDYE---IDQYEEFCFSVRFKAYPQIRCTWTF 362

Query: 115 QEIKSSYSSHTDDTGRTTTQMSTLSS---NYS-SSTNNATSPSKKITRRMNSILDTDSPS 170
                       D G + ++          Y   + N+                      
Sbjct: 363 SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQ------------------- 403

Query: 171 RSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL 230
              +    L +        PQ   + +        C        G P P  +W K     
Sbjct: 404 --FTKMFTLNI-----RRKPQVLAEASASQA---SC-----FSDGYPLPSWTWKKCSDKS 448

Query: 231 NSSNILDLK-----------YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            +      +           +   V+S  +         +  C A NSLGT+     L 
Sbjct: 449 PNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 71.7 bits (175), Expect = 6e-14
 Identities = 40/366 (10%), Positives = 82/366 (22%), Gaps = 98/366 (26%)

Query: 35  SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYS 94
                +++ +  D     S  Y  V+ +              +  E+   +      +  
Sbjct: 9   VIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVE------VDV 62

Query: 95  GDRKYIE--KHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSS------- 145
                ++         + +   +    +   H D   R    M  L    + +       
Sbjct: 63  SASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFI 122

Query: 146 TNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQ 205
            + AT+                            I           +  K+ ++      
Sbjct: 123 QSEATN--------------------YTILFTVSIRNTLLYTLRRPYFRKMENQDA---- 158

Query: 206 CLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT 265
              L  + +  PEP V W        S      +    V   + + +         C A 
Sbjct: 159 ---LVCISESVPEPIVEWVLCDSQGESCK----EESPAVVKKEEKVLHELFGTDIRCCAR 211

Query: 266 NSLGTAETK----------------------------CKLT---------------PLNS 282
           N LG   T+                            CK                  L  
Sbjct: 212 NELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271

Query: 283 SNILDLKYKNG------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAAN 336
            N  ++   +       +    +  V   D G Y C+++     +     +T+      N
Sbjct: 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL---VTIVEKGFIN 328

Query: 337 LGKSPS 342
              S  
Sbjct: 329 ATNSSE 334

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 12/90 (13%)

Query: 14  PPPTVKWYKGNRELS------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
           P P+  W K + +              ++     +   V S  +   +       KC A 
Sbjct: 435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494

Query: 62  NKHGTDETNCVVIVESEEESKEQQELAHNF 91
           N  GT     ++         +     H+ 
Sbjct: 495 NSLGTSCETILLNSPGPFPFIQDGGTKHHH 524

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score =  113 bits (286), Expect = 1e-31
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KNGV 244
           AM PP+F     + +ID+G+   +   V G P P VSW  NG+ + S ++  +   + G+
Sbjct: 2   AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            SL  + V   D G Y C A N  G A    +L 
Sbjct: 62  HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 80.8 bits (200), Expect = 3e-19
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 13  KPPPTVKWYKGNREL-SKRDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            P P V WY   R + S   + M  S  G+ S+     +  D+G Y CVA N+ G     
Sbjct: 32  LPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT 91

Query: 71  CVVIVESEE 79
             + V ++E
Sbjct: 92  VQLDVLAKE 100

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score =  112 bits (283), Expect = 3e-31
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYKNGV 244
           +M  P+   ++  +T+  G        V G P+P   W KNG  +  S  I     ++ V
Sbjct: 2   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             L I++V  ED    +  A N  G   +   L 
Sbjct: 62  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 86.2 bits (214), Expect = 3e-21
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 13 KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
          KP P  +WYK   ++  S R Y     D V  + I D   EDS      A N  G   ++
Sbjct: 32 KPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH 91

Query: 71 CVVIVESE 78
            ++V+++
Sbjct: 92 AFLLVQAK 99

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  111 bits (280), Expect = 1e-30
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYK 241
             ++   P F     D T+ +G+   +   V G P P +SW  +G+P+   S    L  +
Sbjct: 3   SGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE 62

Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           NGV SL I+ V   D G+Y C ATN  G      +L 
Sbjct: 63  NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDS 53
           + V+ G            P P + W    + +        +   +GV S+ I      D+
Sbjct: 19  LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDA 78

Query: 54  GEYKCVATNKHGTDETNCVVIVESEEES 81
           G Y C+ATN+ G +  +  ++V ++E  
Sbjct: 79  GIYTCIATNRAGQNSFSLELVVAAKESG 106

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  111 bits (279), Expect = 2e-30
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYK 241
             +   P F  KL    I +G  +  +  V G+P+P++ W K+G+ ++  +      +  
Sbjct: 3   SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL 62

Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           +G  SL       +D+G Y   A N  G      +L 
Sbjct: 63  DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 13  KPPPTVKWYKGNRELSKRD--YSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
            P P + W+K  +++S +   Y++    DG  S+       +D G Y  +A N  G    
Sbjct: 35  NPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISC 94

Query: 70  NCVVIVESEEES 81
              ++V++    
Sbjct: 95  TGRLMVQAVNSG 106

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  112 bits (282), Expect = 2e-30
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 2/113 (1%)

Query: 168 SPSRSRSTTKELIMPPD-TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN 226
           + ++  +    L    +      P F   + D  + +G        V+G P+P V W K+
Sbjct: 19  NANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD 78

Query: 227 GQPLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             P+  S    + Y + G  SL I EV  +D+  Y C A NSLG A    +L 
Sbjct: 79  DNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 78.0 bits (192), Expect = 1e-17
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 13  KPPPTVKWYKGNRELSK-RDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            P P V W+K +  + + R + + Y  +G  S+ I +   +D  +Y C A N  G     
Sbjct: 68  YPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT 127

Query: 71  CVVIVESEEESKEQQE 86
             ++VE+  +  E + 
Sbjct: 128 AELLVETMGKEGEGEG 143

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  120 bits (303), Expect = 2e-30
 Identities = 54/373 (14%), Positives = 109/373 (29%), Gaps = 81/373 (21%)

Query: 2   QNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
           ++ + +         T  W+  N+ L      +  S+   ++ ++     D G Y+C   
Sbjct: 304 EDAVALTCEPEIQNTTYLWWVNNQSLPVSP-RLQLSNDNRTLTLLSVTRNDVGPYECGIQ 362

Query: 62  NKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKS 119
           N+   D ++ V++             ++ +   G    +  H    P             
Sbjct: 363 NELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQ 422

Query: 120 SYSSH-------TDDTGRTTTQMSTLSSNYS-SSTNNATSPSKKITRRMNSILDTDSPSR 171
            ++           ++G            Y+  + N+A+                     
Sbjct: 423 QHTQELFISNITEKNSG-----------LYTCQANNSASG-------------------H 452

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
           SR+T K + +  +    P    +    K ++D   +  +   +        W  NGQ L 
Sbjct: 453 SRTTVKTITVSAEL---PKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLP 508

Query: 232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC---------KLTPLNS 282
            S  L L   N   +L +  V   D   YVC   NS+    +               ++ 
Sbjct: 509 VSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISP 566

Query: 283 SNI-------LDLK-------------YKNGV-----ASLQIQEVFPEDEGVYVCTATNS 317
            +        L+L                NG+       L I ++ P + G Y C  +N 
Sbjct: 567 PDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNL 626

Query: 318 LGTAETKCKLTVR 330
                     ++ 
Sbjct: 627 ATGRNNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  119 bits (300), Expect = 6e-30
 Identities = 54/365 (14%), Positives = 98/365 (26%), Gaps = 81/365 (22%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
              T  W+  N+ L      +  S+G  ++ + +    D+  YKC   N      ++ V+
Sbjct: 138 QDATYLWWVNNQSLPV-SPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVI 196

Query: 74  IVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSH------- 124
           +              +    SG+   +  H    P               +         
Sbjct: 197 LNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNIT 256

Query: 125 TDDTGRTTTQMSTLSSNYS-SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPP 183
            +++G           +Y+  + N+ T  +                 R+  TT  +   P
Sbjct: 257 VNNSG-----------SYTCQAHNSDTGLN-----------------RTTVTTITVYAEP 288

Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
                            ++D   + L+   +        W  N Q L  S    L+  N 
Sbjct: 289 PKPFITSN-----NSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSP--RLQLSND 340

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL----------------TPLNSSNILD 287
             +L +  V   D G Y C   N L    +   +                T       L 
Sbjct: 341 NRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLS 400

Query: 288 LK-------------YKNGV-----ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
           L                +G        L I  +  ++ G+Y C A NS          T+
Sbjct: 401 LSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTI 460

Query: 330 RSTPA 334
             +  
Sbjct: 461 TVSAE 465

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  113 bits (284), Expect = 8e-28
 Identities = 62/376 (16%), Positives = 90/376 (23%), Gaps = 103/376 (27%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE--TNC 71
           PP    W+               S     + I +    +SG Y C A N        T  
Sbjct: 231 PPAQYSWFVNGTFQQ--------STQ--ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT 280

Query: 72  VVIVESEEESKEQQELAHNFLYSGDRKYIE-KHIRPAPAIITTR--QEIKSSYSSHTDDT 128
            + V +E           N +   D   +  +        +     Q +  S      + 
Sbjct: 281 TITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSND 340

Query: 129 GRTTTQMSTLSS---NYS-SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD 184
            RT T +S   +    Y     N                    S   S      ++  PD
Sbjct: 341 NRTLTLLSVTRNDVGPYECGIQNEL------------------SVDHSDPVILNVLYGPD 382

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
                P             G  L LS     +P  + SW  +G     +           
Sbjct: 383 DPTISPS------YTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ---------- 426

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT-------------------------- 278
             L I  +  ++ G+Y C A NS          T                          
Sbjct: 427 -ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAV 485

Query: 279 --------------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 318
                                L  S  L L   N   +L +  V   D   YVC   NS+
Sbjct: 486 AFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSV 543

Query: 319 GTAETKC-KLTVRSTP 333
               +    L V   P
Sbjct: 544 SANRSDPVTLDVLYGP 559

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  106 bits (266), Expect = 2e-25
 Identities = 66/390 (16%), Positives = 94/390 (24%), Gaps = 103/390 (26%)

Query: 13  KPPPTVKWYKGNRELSKRDYSMSYSDGVV-----------------SMEIIDCKPEDSGE 55
           +      WYKG R    R                            S+ I +    D+G 
Sbjct: 26  QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGF 85

Query: 56  YKCVATNKHGTDETNCVVIVESEEESK-EQQELAHNFLYSGDRKYIEKHIRPAPAIITTR 114
           Y          +E          E  K          +   D            A     
Sbjct: 86  YTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWW 145

Query: 115 ---QEIKSSYSSHTDDTGRTTTQMSTLSS---NYSSSTNNATSPSKKITRRMNSILDTDS 168
              Q +  S      +  RT T  +   +   +Y   T N                   S
Sbjct: 146 VNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNP-----------------VS 188

Query: 169 PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ 228
             RS S    ++  PD     P       + +   G+ L+LS     +P  + SW  NG 
Sbjct: 189 ARRSDSVILNVLYGPDAPTISPL------NTSYRSGENLNLSCHAASNPPAQYSWFVNGT 242

Query: 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------- 278
              S+             L I  +   + G Y C A NS          T          
Sbjct: 243 FQQSTQ-----------ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291

Query: 279 ---PLNSSNILD-------------------------------LKYKNGVASLQIQEVFP 304
                NS+ + D                               L+  N   +L +  V  
Sbjct: 292 FITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTR 351

Query: 305 EDEGVYVCTATNSLGTAETKC-KLTVRSTP 333
            D G Y C   N L    +    L V   P
Sbjct: 352 NDVGPYECGIQNELSVDHSDPVILNVLYGP 381

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 31/192 (16%), Positives = 43/192 (22%), Gaps = 64/192 (33%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV----------------ASL 247
           G+ + L            SW K  +   +  I+                        ASL
Sbjct: 14  GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAET--------------------------------KC 275
            IQ +   D G Y      S    E                                  C
Sbjct: 74  LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133

Query: 276 KLT-------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE 322
           +                L  S    L+  NG  +L +  V   D   Y C   N +    
Sbjct: 134 EPETQDATYLWWVNNQSLPVSP--RLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARR 191

Query: 323 TK-CKLTVRSTP 333
           +    L V   P
Sbjct: 192 SDSVILNVLYGP 203

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 11/81 (13%)

Query: 1   MQNVIKVKVGST--------KPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPE 51
             N   V+                T  W+   + L       +S  +   ++ + +    
Sbjct: 473 SNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRN 530

Query: 52  DSGEYKCVATNKHGTDETNCV 72
           D+  Y C   N    + ++ V
Sbjct: 531 DARAYVCGIQNSVSANRSDPV 551

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  112 bits (283), Expect = 6e-30
 Identities = 45/202 (22%), Positives = 68/202 (33%), Gaps = 52/202 (25%)

Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYK 241
           +T   PP+   K  ++ +  G         +GDP P + W KNG+ ++ +      L+  
Sbjct: 1   ETGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60

Query: 242 NGVASLQIQEVF-PEDEGVYVCTATNSLGTA-ETKCKLTPLNSSNILDLK---------- 289
            G++ L+I+ V    D+  Y C A N +G A      LT                     
Sbjct: 61  GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTR 120

Query: 290 ------------------------YKNGVA-------------SLQIQEVFPEDEGVYVC 312
                                    KN                 LQI+    ED+G Y C
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYEC 180

Query: 313 TATNSLGTAETKC-KLTVRSTP 333
            A NS+GT  +K   L V+   
Sbjct: 181 VAENSMGTEHSKATNLYVKVRR 202

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 91.0 bits (226), Expect = 8e-22
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 9/109 (8%)

Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP 229
           + S   T  +     T    P        + I+ G  + ++    G+P P + W KN   
Sbjct: 91  AVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTK 150

Query: 230 LNSSN---ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275
           ++ SN    L     +G   LQI+    ED+G Y C A NS+GT  +K 
Sbjct: 151 VDMSNPRYSLK----DG--FLQIENSREEDQGKYECVAENSMGTEHSKA 193

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 11/80 (13%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
             ++VG T          P P + W K   ++   +   S  DG   ++I + + ED G+
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG--FLQIENSREEDQGK 177

Query: 56  YKCVATNKHGTDETNCVVIV 75
           Y+CVA N  GT+ +    + 
Sbjct: 178 YECVAENSMGTEHSKATNLY 197

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 13  KPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIID--CKPEDSGEYKCVATNKHGTD- 67
            PPP++ W K  +++S     Y++    G +S+  I+      D   Y+CVA N  G   
Sbjct: 33  DPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 92

Query: 68  ETNCVVIVESEEESKEQ 84
             +  + +   +++   
Sbjct: 93  SADATLTIYEGDKTPAG 109

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  111 bits (280), Expect = 1e-29
 Identities = 47/184 (25%), Positives = 61/184 (33%), Gaps = 43/184 (23%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
            P     L        +       V+  P+P +SWT+N   +   +      +NG   L 
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG-QLLT 65

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKC-----------------KLTPLNSSNILDLK-- 289
           I  V   D+G+Y CTA N +G A   C                          +L     
Sbjct: 66  ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTM 125

Query: 290 ---------YKNGVA-------------SLQIQEVFPEDEGVYVCTATNSLGTAETKC-K 326
                     K   A             SL+I  V  ED G Y C A NSLGTA +K  K
Sbjct: 126 GNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVK 185

Query: 327 LTVR 330
           L V 
Sbjct: 186 LEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 62.4 bits (152), Expect = 8e-12
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
           +K+  G            P P+V W KG+  L +         G  S+ I + + ED+G+
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG--SLRIHNVQKEDAGQ 167

Query: 56  YKCVATNKHGTDETNCV 72
           Y+CVA N  GT  +  V
Sbjct: 168 YRCVAKNSLGTAYSKLV 184

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 14/63 (22%), Positives = 23/63 (36%)

Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
           P P + W +    +   D   S  +    + I+  +  D G Y C A N  G    +C 
Sbjct: 34 YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93

Query: 73 VIV 75
           + 
Sbjct: 94 ALQ 96

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  114 bits (286), Expect = 2e-29
 Identities = 36/198 (18%), Positives = 57/198 (28%), Gaps = 51/198 (25%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL--NSSNILDLKYKNGVAS 246
            P F  +L +  +       L   V G P+P V W + G+ +  +       ++K G   
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------------------------- 278
           L I  V  +D  VY   ATN  G+      L                             
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 279 --------------------PLNSSNILDLKYKNGVAS-LQIQEVFPEDEGVYVCTATNS 317
                                ++++    +       S +    V  +D G YV  A N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 318 LGTAETKCKLTVRSTPAA 335
            G  +   +L V   P  
Sbjct: 184 FGIDQKTVELDVADVPDP 201

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 1/108 (0%)

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
           S S T  L +     +  P+    +       G+ + +     G P+P ++W K    ++
Sbjct: 87  SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID 146

Query: 232 SSNILDLKYKNGVAS-LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           ++    +       S +    V  +D G YV  A N  G  +   +L 
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 67.5 bits (165), Expect = 7e-13
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 14 PPPTVKWYKGNREL--SKRDYSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
          P P VKWY+  +E+      Y +     G   + I     +D+  Y+  ATN+ G+    
Sbjct: 32 PKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT 91

Query: 71 CVVIVE 76
            + VE
Sbjct: 92 ASLEVE 97

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 3   NVIKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDC-KPE 51
             +    G           KP P + W KG   + +   Y +  +    S+   +  + +
Sbjct: 112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK 171

Query: 52  DSGEYKCVATNKHGTDETNCVVIV 75
           D+G Y   A N+ G D+    + V
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVELDV 195

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  112 bits (281), Expect = 9e-29
 Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 56/199 (28%)

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--- 241
                  F   ++ +    G+  ++   V   P P VSW  + + + + +  D ++    
Sbjct: 94  EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS--DNRFAMLA 151

Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLG-------------------------------- 269
           N   +LQI  +   DEG+Y C                                       
Sbjct: 152 NN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERG 209

Query: 270 -TAETKCKLT--------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 314
                 C+ +               +  +    LK  N    L ++ +   D G YVC A
Sbjct: 210 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRA 267

Query: 315 TNSLGTAETKCKLTVRSTP 333
           TN  G  E +  L V    
Sbjct: 268 TNKAGEDEKQAFLQVFVQH 286

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  104 bits (262), Expect = 4e-26
 Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 44/192 (22%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
           +M   Q    L+   +  G+    +    G+PE    +   G+ + S+  + ++ +   +
Sbjct: 1   SMALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 60

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKC-----------KLTPLNSS----NILDLK- 289
            L I     ED G+Y C AT++ G  +              +              ++  
Sbjct: 61  RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 120

Query: 290 ------------YKNGVA---------------SLQIQEVFPEDEGVYVCTATN-SLGTA 321
                         +                  +LQI  +   DEG+Y C     + G  
Sbjct: 121 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEI 180

Query: 322 ETKCKLTVRSTP 333
           + +  + + + P
Sbjct: 181 DFRDIIVIVNVP 192

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 90.3 bits (224), Expect = 8e-21
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
            R     + +PP           K  + T + G+ +  S    G PEP +SW +NG+ + 
Sbjct: 182 FRDIIVIVNVPPA-----ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 236

Query: 232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            +    LK  N    L ++ +   D G YVC ATN  G  E +  L 
Sbjct: 237 ENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 281

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 13  KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
            P P + W++  + + +   Y +  S+    + + +    D G Y C ATNK G DE   
Sbjct: 221 SPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQA 278

Query: 72  VVIVESEEESKEQQ 85
            + V   +      
Sbjct: 279 FLQVF-VQHHHHHH 291

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 57.9 bits (140), Expect = 8e-10
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 15 PPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
          P ++ WY    E   S +   +        + I +   ED+G Y+C AT+  G  +   V
Sbjct: 32 PESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 91

Query: 73 VIV 75
          V+ 
Sbjct: 92 VLE 94

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 55.2 bits (133), Expect = 7e-09
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
            + K G            P P V W   N E++    +        +++I++    D G 
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 167

Query: 56  YKCVATNK-HGTDETNCVVIV 75
           Y+C    +  G  +   ++++
Sbjct: 168 YRCEGRVEARGEIDFRDIIVI 188

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score =  105 bits (265), Expect = 2e-28
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYKNGVAS 246
            P F  K   K + +G  + L   +   P P++ W +N + +  +   I   +   G  +
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           L I++V  +D G Y  +A N  G      +L 
Sbjct: 75  LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 76.3 bits (188), Expect = 2e-17
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPED 52
            KV  G +          PPP + W + N  +   + R      + G V++ I D   +D
Sbjct: 25  KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKD 84

Query: 53  SGEYKCVATNKHGTDETNCVVIVES 77
           +G Y   A N+ G    N  + V +
Sbjct: 85  AGWYTVSAVNEAGVTTCNTRLDVTA 109

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  107 bits (270), Expect = 3e-28
 Identities = 36/190 (18%), Positives = 61/190 (32%), Gaps = 52/190 (27%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK---NGV 244
           +   F   ++ +    G+  ++   V   P P VSW  + + + + +  D ++    N  
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS--DNRFAMLANN- 57

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT-----------PLNSSNILDLK---- 289
            +LQI  +   DEG+Y C              +            P  S N    +    
Sbjct: 58  -NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 116

Query: 290 ----------------YKNGVA--------------SLQIQEVFPEDEGVYVCTATNSLG 319
                           ++NG                 L ++ +   D G YVC ATN  G
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 176

Query: 320 TAETKCKLTV 329
             E +  L V
Sbjct: 177 EDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 90.6 bits (225), Expect = 6e-22
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP 229
              R     + +PP           K  + T + G+ +  S    G PEP +SW +NG+ 
Sbjct: 84  IDFRDIIVIVNVPP-----AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL 138

Query: 230 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           +  +    LK  N    L ++ +   D G YVC ATN  G  E +  L 
Sbjct: 139 IEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 13  KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
            P P + W++  + +     Y +  S+    + + +    D G Y C ATNK G DE   
Sbjct: 125 SPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQA 182

Query: 72  VVIV 75
            + V
Sbjct: 183 FLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 13/64 (20%), Positives = 25/64 (39%)

Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
           P P V W   N E++    +        +++I++    D G Y+C    +   +     
Sbjct: 29 SPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 88

Query: 73 VIVE 76
          +IV 
Sbjct: 89 IIVI 92

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  106 bits (267), Expect = 1e-27
 Identities = 25/203 (12%), Positives = 50/203 (24%), Gaps = 63/203 (31%)

Query: 190 PQFANKLTDKTIDDG-QCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--NGVAS 246
             F        I +  Q        K     +V++  N + +       +      G+  
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK----------------- 289
           + ++++  EDEG Y     +   T  +   L       +                     
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 290 -----------------------------YKNG--------------VASLQIQEVFPED 306
                                        YK+               + +L I E   +D
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKD 182

Query: 307 EGVYVCTATNSLGTAETKCKLTV 329
            G+Y     +  G  +++ KL  
Sbjct: 183 AGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 91.2 bits (226), Expect = 7e-22
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 162 SILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PEPR 220
           +++      +      E           P F   L    +     + L   V     E  
Sbjct: 90  TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETH 148

Query: 221 VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           + W K+ + ++     D K  +G+ +L I E   +D G+Y     +  G  +++ KL 
Sbjct: 149 IVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 81.9 bits (202), Expect = 1e-18
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
           ++K KV + K    + WYK  RE+   D    + DG+ ++ I +   +D+G Y+ +  + 
Sbjct: 135 LLKCKVANIKKETHIVWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 193

Query: 64  HGTDETNCVVIVES 77
            G D++   ++ E+
Sbjct: 194 RGKDKSRLKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 74.6 bits (183), Expect = 7e-16
 Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 2   QNVIKVKVGSTKPPPTVKWYKGNREL-SKRDYSMSYSD--GVVSMEIIDCKPEDSGEYKC 58
           Q    ++         V +    +E+     Y M      G++ M +   + ED G Y  
Sbjct: 19  QVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTF 78

Query: 59  VATNKHGTDETNCVVIVESEEESKEQQEL 87
              +   T+ +  V++ +  ++ +++ E 
Sbjct: 79  QLQDGKATNHSTVVLVGDVFKKLQKEAEF 107

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  109 bits (273), Expect = 2e-27
 Identities = 49/307 (15%), Positives = 84/307 (27%), Gaps = 49/307 (15%)

Query: 8   KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
                 P     W K    L   +       G   +++++   EDSG Y C         
Sbjct: 31  PPPGGGPMGPTVWVKDGTGLVPSER---VLVGPQRLQVLNASHEDSGAYSCRQRLTQRVL 87

Query: 68  ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDD 127
               V + ++     ++           D          AP      +  K   +    +
Sbjct: 88  CHFSVRVTDAPSSGDDEDGE--------DEAEDTGVDTGAPYWTRPERMDKKLLAVPAAN 139

Query: 128 T--------GRTTTQMS------TLSSNYSSSTNNATSPSKKITRRMNSILDTDS----- 168
           T        G  T  +S                       ++ +  M S++ +D      
Sbjct: 140 TVRFRCPAAGNPTPSISWLKNGREFRG--EHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197

Query: 169 ----PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWT 224
                  S   T  L +   +   P   A    ++T   G  ++    V  D +P + W 
Sbjct: 198 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257

Query: 225 KNGQPLNSSNILDLKY-------------KNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
           K+ +   S    D                   +  L +  V  ED G Y C A NS+G +
Sbjct: 258 KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFS 317

Query: 272 ETKCKLT 278
                L 
Sbjct: 318 HHSAWLV 324

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 78.1 bits (192), Expect = 2e-16
 Identities = 22/118 (18%), Positives = 33/118 (27%), Gaps = 5/118 (4%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
           P     +        G  ++LS     G P     W K+G  L  S     +   G   L
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE----RVLVGPQRL 63

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPE 305
           Q+     ED G Y C    +               S+  D   ++      +    P 
Sbjct: 64  QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 71.6 bits (175), Expect = 4e-14
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 4   VIKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPED 52
           ++ V   +T          P P++ W K  RE     R   +       S+ +    P D
Sbjct: 132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSD 191

Query: 53  SGEYKCVATNKHGTDETNCVVIVESEEESK 82
            G Y CV  NK G+      + V      +
Sbjct: 192 RGNYTCVVENKFGSIRQTYTLDVLERSPHR 221

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 56.5 bits (136), Expect = 4e-09
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 24/103 (23%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRE--------------LSKRDYSMSYSDGVV 41
               +GS             P ++W K                  + K   + +    + 
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291

Query: 42  SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV-ESEEESKE 83
            + + +   ED+GEY C+A N  G    +  ++V  +EEE  E
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score =  102 bits (256), Expect = 3e-27
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
              + ++     ++G  +     ++   +  +V+W    + L +S   ++ Y++GVA L 
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           ++++   D+G Y C   N  G   +  +L 
Sbjct: 62  VKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 88.1 bits (219), Expect = 6e-22
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 4  VIKVKVGSTKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
              K+ +      V WY G R+L     Y ++Y DGV  + + D    D G Y+C   N
Sbjct: 20 KYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVN 79

Query: 63 KHGTDETNCVVIVESEEE 80
           +G D +   + V+   E
Sbjct: 80 DYGEDSSYAELFVKGVRE 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score =  102 bits (257), Expect = 3e-27
 Identities = 20/95 (21%), Positives = 37/95 (38%)

Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
            +  + PQ      D+ +  G+ ++L   V G      +W K  + +  S  + ++    
Sbjct: 2   SSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            + L I     E  G Y     N LG+ + +  LT
Sbjct: 62  GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 82.0 bits (203), Expect = 2e-19
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 5  IKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSG 54
           KV+ G +           P T  W K  +++       +  S+    + I+  + E  G
Sbjct: 17 QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCG 76

Query: 55 EYKCVATNKHGTDETNCVVIVE 76
           Y  +  NK G+ +    + V 
Sbjct: 77 CYTLLVENKLGSRQAQVNLTVV 98

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  108 bits (271), Expect = 3e-27
 Identities = 45/301 (14%), Positives = 78/301 (25%), Gaps = 53/301 (17%)

Query: 11  STKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
           S  P   + W+K +       + +  M   DG  ++ ++    EDSG Y C   N    D
Sbjct: 50  SVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDSGTYVCTTRNASYCD 107

Query: 68  ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHI-------RPAPAIITTR--QEIK 118
           + +  + V    ++          L       +           +    I   +    + 
Sbjct: 108 KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLD 167

Query: 119 SSYSSHTDDTGRTTTQMSTLSS----NYS-SSTNNATSPSKKITRRMNSILDTDSPSRSR 173
                     G T   +  ++      Y    T         ITR               
Sbjct: 168 KDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITR--------------- 212

Query: 174 STTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV---KGDPEPRVSWTKNGQPL 230
             + EL +      T P   + L   +   G  L +   V    G P   + W       
Sbjct: 213 --SIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTH 270

Query: 231 NSSNILDLKYKNG-------------VASLQIQEVFPEDEGV-YVCTATNSLGTAETKCK 276
             S     +   G                L    V  ED  + + C   N+L     +  
Sbjct: 271 IESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTT 330

Query: 277 L 277
           +
Sbjct: 331 V 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 91.3 bits (226), Expect = 5e-21
 Identities = 28/226 (12%), Positives = 57/226 (25%), Gaps = 56/226 (24%)

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQ-----C--LDLSAVVKGDPEPRVSWT 224
           +   T +       A +          +   +G+     C  +         P   ++W 
Sbjct: 1   ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60

Query: 225 KNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSN 284
           KN          + +      +L +     ED G YVCT  N+    +   +L    +++
Sbjct: 61  KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD 120

Query: 285 ILDLK----------------------------------YKNGV---------------A 295
                                                  YK+ +                
Sbjct: 121 AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT 180

Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSP 341
            L + +V  ED G Y C  T +    +     ++         ++ 
Sbjct: 181 HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETI 226

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 15/83 (18%)

Query: 6   KVKVGSTKPPPTVKWYKGNRELSKRDY--------------SMSYSDGVVSMEIIDCKPE 51
           KV +G+  P  T+ W+  N    +  Y                + +   V +       E
Sbjct: 249 KVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRE 308

Query: 52  DSG-EYKCVATNKHGTDETNCVV 73
           D   ++KCV  N          V
Sbjct: 309 DLHMDFKCVVHNTLSFQTLRTTV 331

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  104 bits (260), Expect = 6e-26
 Identities = 34/213 (15%), Positives = 55/213 (25%), Gaps = 55/213 (25%)

Query: 166 TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK 225
           T         T  + +          F N  T +   +G+   +   V     P + W  
Sbjct: 82  TAEDGTQSEATVNVKIFQ-----KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH 136

Query: 226 NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------- 278
            G+ +     +     +    LQI+ +   DEG Y C              +        
Sbjct: 137 KGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPP 195

Query: 279 ----------------------------------------PLNSSNILDLKY--KNGVAS 296
                                                   P+ +    D K+   +  + 
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 255

Query: 297 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
           L I+ V   DE  YVC A N  G  +    L V
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 84.2 bits (208), Expect = 9e-19
 Identities = 36/194 (18%), Positives = 55/194 (28%), Gaps = 49/194 (25%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTK-NGQPLNSSN--ILDLKYKNGVA 245
            Q     +   I  G+       V GD  +  +SW   NG+ L+ +   I  +   +  +
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKC-------KLTPLNSSNILDLK--------- 289
           +L I     +D G+Y C  T   GT            KL   N+    + K         
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122

Query: 290 ------------YKNGVA---------------SLQIQEVFPEDEGVYVCTATNSLGTAE 322
                          G                  LQI+ +   DEG Y C          
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI 182

Query: 323 TKC--KLTVRSTPA 334
                ++ V   P 
Sbjct: 183 NFKDIQVIVNVPPT 196

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 58.0 bits (140), Expect = 8e-10
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 13  KPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
            P PT+ W K    +    + D    +SD    + I +    D  EY C+A NK G  + 
Sbjct: 223 FPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDA 282

Query: 70  NCVVIV 75
           +  + V
Sbjct: 283 SIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 9/81 (11%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
            + K G             PPT+ W    R++  +            ++I   K  D G 
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT 169

Query: 56  YKCVATNKHGTDETNCVVIVE 76
           Y+C        +     + V 
Sbjct: 170 YRCEGRILARGEINFKDIQVI 190

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 8  KVGSTKPPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
          +V        + W+  N E      +R   +   D   ++ I +   +D+G YKCV T +
Sbjct: 25 QVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE 84

Query: 64 HGTDETNCVVIV 75
           GT     V + 
Sbjct: 85 DGTQSEATVNVK 96

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 97.8 bits (244), Expect = 1e-25
 Identities = 19/90 (21%), Positives = 29/90 (32%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
            P+         I  G   +L     G P+P  +WT        +  L +  K+   S+ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                  D G Y     N LG  E   ++ 
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 82.4 bits (204), Expect = 6e-20
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 3  NVIKVKVGST---------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPED 52
            IK+K G T          P PT  W  G+       +  +       S+     K  D
Sbjct: 10 RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRAD 69

Query: 53 SGEYKCVATNKHGTDETNCVVIVE 76
          SG YK    N+ G DE    VIV+
Sbjct: 70 SGNYKLKVKNELGEDEAIFEVIVQ 93

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  106 bits (265), Expect = 2e-25
 Identities = 47/393 (11%), Positives = 88/393 (22%), Gaps = 95/393 (24%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV- 72
                       +   +D           M     +        C    +  +  +    
Sbjct: 142 EVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFI 201

Query: 73  --VIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIIT---TRQEIKSSYSSHT 125
             V    +         A   L  G+   +   I+   +    T      + K     ++
Sbjct: 202 LKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS 261

Query: 126 DDTGRTTTQ-MSTL---------SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRST 175
              G    +  +TL         S  +    NN                     S + +T
Sbjct: 262 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG------------------SANVTT 303

Query: 176 TKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSN 234
           T E++           F    T   ++DG+ +DL    +  P+P    W    +      
Sbjct: 304 TLEVVDKG----FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKW 359

Query: 235 ILDLKYKN-----GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------- 278
               K +N      V+ L +  +   + G Y    +NS   A     +            
Sbjct: 360 EDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYD 419

Query: 279 ------------------------------------PLNSSNILDLKYKNG--VASLQIQ 300
                                               P++   +       G  V    I 
Sbjct: 420 RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479

Query: 301 EVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
               +  G   C A N +G          +   
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNN 512

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  102 bits (255), Expect = 3e-24
 Identities = 43/397 (10%), Positives = 101/397 (25%), Gaps = 97/397 (24%)

Query: 5   IKVKVGST-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59
           + V+VG         P  VKW     + +  +    +            +  ++G+Y C 
Sbjct: 46  LIVRVGDEIRLLCTDPGFVKWTFEILDETNENKQNEWI-------TEKAEATNTGKYTCT 98

Query: 60  ATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR-PAPAIITTR---- 114
             +         V + +  +     + L   +    +   +   +  P     + +    
Sbjct: 99  NKHGLSNSIY--VFVRDPAKLFLVDRSL---YGKEDNDTLVRCPLTDPEVTNYSLKGCQG 153

Query: 115 QEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRS 174
           + +        D       +    + +      +     K +      +    +      
Sbjct: 154 KPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFK---- 209

Query: 175 TTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSS 233
                          P  +       + +G+   ++  +K        +W +        
Sbjct: 210 -------------AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQ 256

Query: 234 NILDLKYKN-----GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------- 278
              +  +         A+L I      D GV++C A N+ G+A     L           
Sbjct: 257 EKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIF 316

Query: 279 PLNSSNI-------LDLK--------------YKNG---------------------VAS 296
           P+ ++ +       +DL                                        V+ 
Sbjct: 317 PMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSE 376

Query: 297 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
           L +  +   + G Y    +NS   A     + V + P
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP 413

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 87.0 bits (215), Expect = 5e-19
 Identities = 43/310 (13%), Positives = 78/310 (25%), Gaps = 67/310 (21%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME------IIDCKPEDSGEYK 57
            +   +          W + N +   ++   S+  G  + E      I   +  DSG + 
Sbjct: 230 TVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFM 289

Query: 58  CVATNKHGTDETNCVVIV-ESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTR 114
           C A N  G+      + V +    +         F+  G+   +       P P      
Sbjct: 290 CYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWI 349

Query: 115 ---QEIKSSYSSHTDDTGRTTT-QMSTL---------SSNYS-SSTNNATSPSKKITRRM 160
              +     +  +      +    +S L            Y+   +N+  + +      +
Sbjct: 350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409

Query: 161 NSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR 220
           N                          T P+        T D      L  V  G PEP 
Sbjct: 410 N--------------------------TKPEIL------TYDRLVNGMLQCVAAGFPEPT 437

Query: 221 VSWTKNGQ----------PLNSSNILDLKYKNG--VASLQIQEVFPEDEGVYVCTATNSL 268
           + W               P++   +       G  V    I     +  G   C A N +
Sbjct: 438 IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDV 497

Query: 269 GTAETKCKLT 278
           G         
Sbjct: 498 GKTSAYFNFA 507

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 55.8 bits (134), Expect = 8e-09
 Identities = 29/190 (15%), Positives = 47/190 (24%), Gaps = 54/190 (28%)

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
              +PP      +D  +  G  + L     G     V WT       + N          
Sbjct: 32  GEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNEN--------KQ 79

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAET--------------------------KCKLT 278
                ++    + G Y CT  + L  +                            +C LT
Sbjct: 80  NEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLT 139

Query: 279 PLNSSNILDLKYKNGVAS-------------LQIQEV-FPEDEGVYVCTATNSLGTAETK 324
               +N   LK   G                + I+ V          C+     G +   
Sbjct: 140 DPEVTNYS-LKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQE-GKSVLS 197

Query: 325 CKLTVRSTPA 334
            K  ++  PA
Sbjct: 198 EKFILKVRPA 207

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 13/114 (11%), Positives = 26/114 (22%), Gaps = 38/114 (33%)

Query: 255 EDEGVYVCT----ATNSLGTAETKCKLT----------------PLNSS----------- 283
                ++C          G+++                       +              
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFV 64

Query: 284 ----NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
                ILD   +N       ++    + G Y CT  + L  +     + VR   
Sbjct: 65  KWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIY---VFVRDPA 115

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  100 bits (250), Expect = 4e-25
 Identities = 29/213 (13%), Positives = 55/213 (25%), Gaps = 65/213 (30%)

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
                   ++P        +       K +  GQ + L     G P  +  W K  + + 
Sbjct: 6   HHHHHSSGLVPR-----GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP 60

Query: 232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC-----KLTPLNSSNIL 286
           + N          + L    V  +D G YVC   N+     ++         P +    +
Sbjct: 61  NGNT---------SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSV 111

Query: 287 DLK--------------------------------------YKNGVA-------SLQIQE 301
           D                                        +KN +           +  
Sbjct: 112 DGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPY 171

Query: 302 VFPEDEGVYVCTATNSLGTAETKC-KLTVRSTP 333
           V  E +G Y C   N   + ++K  ++ +    
Sbjct: 172 VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 204

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 17/79 (21%)

Query: 6   KVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEY 56
           K+  GST          P P  +W+K    L+                +     E  G Y
Sbjct: 129 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK--------LYMVPYVDLEHQGTY 180

Query: 57  KCVATNKHGTDETNCVVIV 75
            C   N   + ++  V I+
Sbjct: 181 WCHVYNDRDSQDSKKVEII 199

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
          P    +W+K N+E+   + S         +       +D+G Y C   N    + +    
Sbjct: 46 PFVQYQWFKMNKEIPNGNTS--------ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97

Query: 74 I 74
          +
Sbjct: 98 L 98

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 99.1 bits (247), Expect = 4e-25
 Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 38/174 (21%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYKNGVAS 246
             +        T+  GQ + L+  V+G  EP + W K+G  + + +   + +  ++ +  
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKC-KLT---------PLNSSNI-----LDLK-- 289
           L ++ V   D G Y C   +   T  ++   LT               +       L   
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121

Query: 290 ------------YKNGV-------ASLQIQEVFPEDEGVYVCTATNSLGTAETK 324
                       ++          +   +         ++ C A N  G A ++
Sbjct: 122 AVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 14 PPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            P ++W K    +   D     +S    +  + +   +  D+G Y C   +   T+ + 
Sbjct: 30 EEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ 89

Query: 71 CV-VIVES 77
           V + VE 
Sbjct: 90 PVWLTVEG 97

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 8/62 (12%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
            P T+ W++G  ++     S S         +       S  + C A N  G   +    
Sbjct: 127 EPVTIVWWRGTTKIGGPAPSPSV--------LNVTGVTQSTMFSCEAHNLKGLASSRTAT 178

Query: 74  IV 75
           + 
Sbjct: 179 VH 180

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =   99 bits (249), Expect = 5e-25
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 1/112 (0%)

Query: 168 SPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNG 227
                    +                      TI +G+ L+L+  V GDP P VSW KN 
Sbjct: 96  YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE 155

Query: 228 QPLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           + L  ++  +LK+     A   I  V   D G Y     N  G+  +   ++
Sbjct: 156 KALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 92.6 bits (230), Expect = 2e-22
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
           +    A  L  ++  +G  L  S V     + +V+W+ NG  +  S+ +          L
Sbjct: 3   SIALSATDLKIQSTAEGIQLY-SFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           QI E  P D+G YV    +     +    L+
Sbjct: 62  QINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 78.4 bits (193), Expect = 3e-17
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 3   NVIKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPE 51
           +V+ ++ G            PPP V W K  + L  +        +       I      
Sbjct: 125 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTA 184

Query: 52  DSGEYKCVATNKHGTDETNCVVIVESEE 79
           DSG+Y  V  NK+G++ ++  V V   E
Sbjct: 185 DSGKYGLVVKNKYGSETSDFTVSVFIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 77.2 bits (190), Expect = 9e-17
 Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 8   KVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
            V        V W      +   D      +   + ++I +  P D G+Y     +    
Sbjct: 25  FVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG 84

Query: 67  DETNCVVIVESEEESKEQQE 86
            +    +  ++ +E+  + +
Sbjct: 85  HQKTVDLSGQAYDEAYAEFQ 104

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  101 bits (252), Expect = 1e-24
 Identities = 38/306 (12%), Positives = 78/306 (25%), Gaps = 47/306 (15%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 60
           V    +   +   T+ WYK + +    +++   +        +  +  K EDSG Y CV 
Sbjct: 24  VRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVV 81

Query: 61  TNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSS 120
            N                E +                 Y  + I      +     +   
Sbjct: 82  RNSSYCLRIKISAKFVENEPNLC---------------YNAQAIFKQKLPVAGDGGLVCP 126

Query: 121 YSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS------------ 168
           Y     +      ++           +N      K    + ++ +               
Sbjct: 127 YMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL 186

Query: 169 --PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN 226
                     + + +  +    P   +       +D G  + L   V G       W  N
Sbjct: 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWN 246

Query: 227 GQPLNSS------------NILDLKYKNGVASLQIQEVFPED-EGVYVCTATNSLGTAET 273
           G  ++              N  + +    +  L I E+     +  + C A N+ G    
Sbjct: 247 GSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 306

Query: 274 KCKLTP 279
             +L  
Sbjct: 307 YIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 77.1 bits (189), Expect = 4e-16
 Identities = 22/183 (12%), Positives = 37/183 (20%), Gaps = 56/183 (30%)

Query: 212 VVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
           +   + +  ++W K+      S     +       L       ED G Y C   NS    
Sbjct: 29  LNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL 88

Query: 272 ETKCKLT----------------------------------------------------- 278
             K                                                         
Sbjct: 89  RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCK 148

Query: 279 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLG 338
           PL   NI    +      L +  V  +  G Y C A+ +    +      +         
Sbjct: 149 PLLLDNI---HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK 205

Query: 339 KSP 341
            + 
Sbjct: 206 PTR 208

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 23/97 (23%)

Query: 2   QNVIKVKVGST---------KPPPTVKWYKGNRELSKRDY-------------SMSYSDG 39
              ++V +GS          +      W      + + D              +   S  
Sbjct: 216 NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTL 275

Query: 40  VVSMEIIDCKPED-SGEYKCVATNKHGTDETNCVVIV 75
           +  + I + +       + C A N HG D     +I 
Sbjct: 276 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 13/54 (24%)

Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAP 349
            L       ED G Y C   NS      K               + +    K P
Sbjct: 63  KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLP 116

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  102 bits (255), Expect = 2e-24
 Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 52/193 (26%)

Query: 195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL---NSSNILDLKYK----NGVASL 247
           +L ++T  +   + L    +G+P P ++W +             LD + +    +G +SL
Sbjct: 6   QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------------------- 278
            I++V   D G Y C A + +G  +    L                              
Sbjct: 66  HIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVK 125

Query: 279 --------------PLNSSNILDLKYKN--GVASLQIQEVFPEDEGVYVCTATNSLGTAE 322
                          L + N  +LK  +      L+I      D G Y CTATN +GT  
Sbjct: 126 SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRF 185

Query: 323 TKCKLTVRSTPAA 335
            +  L +   P++
Sbjct: 186 QEYILALADVPSS 198

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 82.2 bits (203), Expect = 1e-17
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN--GVAS 246
            P+F +  T     +G  +++S  VK +P   + W ++   L + N  +LK  +      
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           L+I      D G Y CTATN +GT   +  L 
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILA 191

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 12/85 (14%)

Query: 3   NVIKVKVGST---------KPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKP 50
            +     G+           PP ++ W +    L  ++        +   + +EI     
Sbjct: 108 TIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSD 167

Query: 51  EDSGEYKCVATNKHGTDETNCVVIV 75
            D G Y C ATN  GT     ++ +
Sbjct: 168 NDFGRYNCTATNHIGTRFQEYILAL 192

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 13 KPPPTVKWYKGNREL--------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64
          +P P + W +                   +    G  S+ I D K  DSG Y C A ++ 
Sbjct: 27 EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 86

Query: 65 GTDETNCVVIVE 76
          G  + +  + +E
Sbjct: 87 GGHQKSMYLDIE 98

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 97.6 bits (243), Expect = 2e-24
 Identities = 35/194 (18%), Positives = 51/194 (26%), Gaps = 57/194 (29%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS--WTKNGQPLNSSNILDLKYKNGVA 245
             P+          D    + L   +       +   WTKNG  L ++            
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR-----KNASNM 56

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--------------------------- 278
             +I +   ED G Y C   + +   +    +                            
Sbjct: 57  EYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCK 115

Query: 279 ---------------------PLNSSNILDLKYKNGVASLQIQEV-FPEDEGVYVCTATN 316
                                  NSS    +  K     L I  +   ED G Y C ATN
Sbjct: 116 SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATN 175

Query: 317 SLGTAETKCKLTVR 330
           S+G+A     L VR
Sbjct: 176 SIGSASVSTVLRVR 189

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 13  KPPPTVKWYKGNREL------SKRDYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHG 65
            P P   W K    +      S   + +   +    + I++ +  ED GEY+C ATN  G
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178

Query: 66  TDETNCVVIV 75
           +   + V+ V
Sbjct: 179 SASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 10 GSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
           S+       W K   EL+    + S         I   + EDSGEY CV  +     + 
Sbjct: 29 SSSHTLMYSYWTKNGVELTATRKNASNM----EYRINKPRAEDSGEYHCVY-HFVSAPKA 83

Query: 70 NCVVIVES 77
          N  + V++
Sbjct: 84 NATIEVKA 91

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 97.6 bits (243), Expect = 2e-24
 Identities = 31/188 (16%), Positives = 49/188 (26%), Gaps = 47/188 (25%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTK-NGQPLNSSN--ILDLKYKNGV 244
             Q     +   I  G+       V GD  +  +SW   NG+ L+ +   I  +   +  
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTPLNSSNILDLK-------------- 289
           ++L I     +D G+Y C  T   GT       +         +                
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121

Query: 290 -------------YKNGVA---------------SLQIQEVFPEDEGVYVCTATNSLGTA 321
                           G                  LQI+ +   DEG Y C         
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181

Query: 322 ETKCKLTV 329
                + V
Sbjct: 182 INFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 84.5 bits (209), Expect = 2e-19
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--- 241
                  F N  T +   +G+   +   V     P + W   G+ +      D+++    
Sbjct: 96  KIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK--DVRFIVLS 153

Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           N    LQI+ +   DEG Y C              + 
Sbjct: 154 NN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 13/83 (15%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDS 53
            + K G             PPT+ W    R++   K    +  S+    ++I   K  D 
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDE 167

Query: 54  GEYKCVATNKHGTDETNCVVIVE 76
           G Y+C        +     + V 
Sbjct: 168 GTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 8  KVGSTKPPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
          +V        + W+  N E      +R   +   D   ++ I +   +D+G YKCV T +
Sbjct: 25 QVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE 84

Query: 64 HGTDETNCVVIV 75
           GT     V + 
Sbjct: 85 DGTQSEATVNVK 96

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 96.8 bits (241), Expect = 7e-24
 Identities = 43/196 (21%), Positives = 66/196 (33%), Gaps = 51/196 (26%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA--S 246
           PP+     +D  +  G+   L+   +G P P + W K G+ + +       ++  +   S
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 247 LQIQEVFP-----EDEGVYVCTATNSLGTAETKC------------KLTPLNSSNILDLK 289
           L    +        DEGVYVC A N LG A +              +  P +    +   
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEP 128

Query: 290 ------------------YKNGVA-------------SLQIQEVFPEDEGVYVCTATNSL 318
                              K+G                L I      D G YVC  TN +
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMV 188

Query: 319 GTAETK-CKLTVRSTP 333
           G  E++  +LTV   P
Sbjct: 189 GERESEVAELTVLERP 204

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 80.6 bits (199), Expect = 4e-18
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSN---ILDLKYK 241
           A+    F    +D  +  G+   +     +G PEP +SW K+G PL+  +    +     
Sbjct: 108 AILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR---- 163

Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
            G   L I      D G YVC  TN +G  E+
Sbjct: 164 GG--KLMITYTRKSDAGKYVCVGTNMVGERES 193

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 57.5 bits (139), Expect = 5e-10
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 8   KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
           +     P PT+ W K    L  +D  ++   G   + I   +  D+G+Y CV TN  G  
Sbjct: 134 QPPRGHPEPTISWKKDGSPLDDKDERITIRGG--KLMITYTRKSDAGKYVCVGTNMVGER 191

Query: 68  ETN 70
           E+ 
Sbjct: 192 ESE 194

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 13  KPPPTVKWYKGNRELS-----KRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVATNKH 64
           +P PT++WYKG   +       R + M    G +    +        D G Y CVA N  
Sbjct: 36  RPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL 95

Query: 65  GTDETNCVVIVESEE 79
           G   ++   +  +  
Sbjct: 96  GEAVSHDASLEVAIL 110

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 92.9 bits (231), Expect = 1e-23
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 188 TPPQFANKL----TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYKN 242
             P + N          +     +       G+P P + W KNG+       I   K +N
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
              SL ++ V P D+G Y C   N  G+      L 
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 74.4 bits (183), Expect = 6e-17
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 4  VIKVKVGST---------KPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPED 52
          +  V   +T          P PT++W K  +E  +  R       +   S+ +    P D
Sbjct: 17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 76

Query: 53 SGEYKCVATNKHGTDETNCVVIV 75
           G Y CV  N++G+      + V
Sbjct: 77 KGNYTCVVENEYGSINHTYHLDV 99

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 92.9 bits (231), Expect = 2e-23
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
           PP       ++T+       LS V  G P P + W K+G  +++ +    + +NG   LQ
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG--VLQ 65

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           I+     D G Y C A+   G A     + 
Sbjct: 66  IRYAKLGDTGRYTCIASTPSGEATWSAYIE 95

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 12/83 (14%)

Query: 5  IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMS-YSDGVVSMEIIDCKPEDSG 54
            V V  T          P PT+ W K    +S +D  +    +G   ++I   K  D+G
Sbjct: 18 QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG--VLQIRYAKLGDTG 75

Query: 55 EYKCVATNKHGTDETNCVVIVES 77
           Y C+A+   G    +  + V+ 
Sbjct: 76 RYTCIASTPSGEATWSAYIEVQE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 91.3 bits (227), Expect = 5e-23
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
           PP       ++T+       L     GDP P +SW K G      +      + G  +LQ
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG--TLQ 65

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           I+ +   D G Y C AT+S G       L 
Sbjct: 66  IKNLRISDTGTYTCVATSSSGETSWSAVLD 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 60.9 bits (148), Expect = 4e-12
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 14 PPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
          P P + W K       RD  +     G  +++I + +  D+G Y CVAT+  G    + V
Sbjct: 36 PLPVISWLKEGFTFPGRDPRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWSAV 93

Query: 73 VIVE 76
          + V 
Sbjct: 94 LDVT 97

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 93.4 bits (232), Expect = 1e-22
 Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 51/200 (25%)

Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPR-VSWTKNGQPLNSSNILDLKY 240
           P +    P    +  +  + +G+ + L        P+     W  N  P+  +       
Sbjct: 2   PGSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFV 61

Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLK----------- 289
                +L I  V   D+G Y C  ++   T     K  PL        K           
Sbjct: 62  SQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK 121

Query: 290 --------------------------YKNGVA------------SLQIQEVFPEDEGVYV 311
                                      K                 L+I  +  EDEG+Y 
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYE 181

Query: 312 CTATNSLGTAETKCKLTVRS 331
           C A N  G  + + ++ V++
Sbjct: 182 CEAENIRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 89.9 bits (223), Expect = 2e-21
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 4/113 (3%)

Query: 166 TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK 225
                 S+      I    T   P     +  D     GQ + L     G+P P + W K
Sbjct: 90  ITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK 149

Query: 226 NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             +P+ S+     +     A L+I  +  EDEG+Y C A N  G  + + ++ 
Sbjct: 150 VLEPMPSTA----EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 62.6 bits (152), Expect = 1e-11
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
           P P ++W K    +      +S S     ++I + + ED G Y+C A N  G D+    +
Sbjct: 141 PVPDIRWRKVLEPMPSTAE-ISTSGA--VLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197

Query: 74  IVES 77
            V++
Sbjct: 198 YVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 5/88 (5%)

Query: 10  GSTKPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
                  + +W      +     +   +S ++G  ++ I + +  D G Y C  ++   T
Sbjct: 34  YHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG--NLYIANVEASDKGNYSCFVSSPSIT 91

Query: 67  DETNCVVIVESEEESKEQQELAHNFLYS 94
                  I       +  +    + +  
Sbjct: 92  KSVFSKFIPLIPIPERTTKPYPADIVVQ 119

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 88.9 bits (221), Expect = 3e-22
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
           P +F   L D  + +G    L  V+     P V W      L   +   L+ +  +  L 
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELV 66

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           ++ + P+D G Y C+     G   T   LT
Sbjct: 67  VRNLRPQDSGRYSCSF----GDQTTSATLT 92

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 12 TKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
          +     VKW  GN  L     YS+     ++ + + + +P+DSG Y C      G   T+
Sbjct: 33 SSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF----GDQTTS 88

Query: 71 CVVIVESEEE 80
            + V +   
Sbjct: 89 ATLTVTALPS 98

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 88.9 bits (221), Expect = 3e-22
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
           P      L D+ +  G+ ++L   +     P V W K+ + +  S   D+  +  +A L 
Sbjct: 8   PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLV 66

Query: 249 IQEVFPEDEGVYVCTATNSLGTAE 272
           I+    +D G Y C    S  TA 
Sbjct: 67  IRGASLKDAGEYTCEVEASKSTAS 90

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 12 TKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
          ++    V W K  + + K + Y +     +  + I     +D+GEY C       T    
Sbjct: 33 SRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKST---- 88

Query: 71 CVVIVE 76
            + VE
Sbjct: 89 ASLHVE 94

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 87.4 bits (217), Expect = 1e-21
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
           +      ++    +  G  L L   ++ D    ++W ++G  L  SN    + +     +
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN----RTRITGEEV 56

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           ++Q+  P D G+Y C  ++  G+  T   + 
Sbjct: 57  EVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 14 PPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
             ++ W +   +L++ +   ++       +E+ D  P DSG Y CV ++  G+D T   
Sbjct: 30 DVQSINWLRDGVQLAESNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFS 85

Query: 73 VIVESEEES 81
          V V     S
Sbjct: 86 VNVSDALPS 94

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 87.1 bits (216), Expect = 1e-21
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
           + +   Q   +     +  G  + L+  V   P P++ W K+G PL           +  
Sbjct: 6   SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-------SP- 57

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             L + E+ P+D+G Y C AT+S    +    ++
Sbjct: 58  -VLILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 17/84 (20%)

Query: 5  IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
            V  G T         +P P + W K    L               + + +  P+D G 
Sbjct: 20 GAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP------LPPSP--VLILPEIGPQDQGT 71

Query: 56 YKCVATNKHGTDETNCVVIVESEE 79
          Y CVAT+     + +  V +   E
Sbjct: 72 YSCVATHSSHGPQESRAVSISIIE 95

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 85.5 bits (212), Expect = 5e-21
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
           +  +  +    LTD+T++ G+ + L   +  +   +  WTKNG P+  S+ L +  K  +
Sbjct: 3   SGSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRI 60

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             L I     EDEG YV              K+ 
Sbjct: 61  HKLVIANALTEDEGDYVFAPDA--YNVTLPAKVH 92

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 10/81 (12%)

Query: 5  IKVKVGST-------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEY 56
            V +G               KW K    + +     +     +  + I +   ED G+Y
Sbjct: 17 QTVNLGKEICLKCEISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDY 76

Query: 57 KCVATNKHGTDETNCVVIVES 77
                          V V S
Sbjct: 77 VFAPDA--YNVTLPAKVHVIS 95

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 85.1 bits (211), Expect = 1e-20
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
                 +L    + +G+      V+          WT  G+ + SS+      +     L
Sbjct: 8   HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYIL 67

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAE 272
            ++E  P D G  V +       A 
Sbjct: 68  VVREAAPSDAGEVVFSVRGLTSKAS 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 6  KVKVGSTKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64
          +  +          W  G + + S   +  +       + + +  P D+GE         
Sbjct: 29 ECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLT 88

Query: 65 GT 66
            
Sbjct: 89 SK 90

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 88.4 bits (219), Expect = 1e-20
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 189 PPQFANKL----TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-ILDLKYKNG 243
            P + N          +     +       G+P P + W KNG+     + I   K +N 
Sbjct: 15  APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             SL ++ V P D+G Y C   N  G+      L 
Sbjct: 75  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 83.0 bits (205), Expect = 9e-19
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 11/118 (9%)

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
           S + T  L +   +   P   A    + +   G  ++    V  D +P + W K+ +   
Sbjct: 101 SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNG 160

Query: 232 SSNILDLK-----------YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           S    D               +    L +  V   D G Y+C  +N +G A     LT
Sbjct: 161 SKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 70.7 bits (173), Expect = 2e-14
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 3   NVIKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPE 51
            +  V   +T          P PT++W K  +E     R       +   S+ +    P 
Sbjct: 27  RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 86

Query: 52  DSGEYKCVATNKHGTDETNCVVIVESEEESK 82
           D G Y CV  N++G+      + V      +
Sbjct: 87  DKGNYTCVVENEYGSINHTYHLDVVERSRHR 117

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 22/107 (20%)

Query: 1   MQNVIKVKVGST---------KPPPTVKWYKGNRELSKR------------DYSMSYSDG 39
             N     VG              P ++W K   +   +             +S   S  
Sbjct: 125 PANAS-TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183

Query: 40  VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 86
              + + +    D+GEY C  +N  G    +  + V  ++++  +++
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 89.2 bits (221), Expect = 2e-20
 Identities = 34/281 (12%), Positives = 68/281 (24%), Gaps = 52/281 (18%)

Query: 17  TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76
           +V+W          D     S    ++   +   +++G Y+C          T   + V 
Sbjct: 31  SVEWDGPISPYWTLDPESPGS----TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV- 85

Query: 77  SEEESKEQQELAHNFLYSGDRKYIEKH-----------IRPAPAIITTR--QEIKSSYSS 123
                   ++ AH++        + +                 ++   R         + 
Sbjct: 86  --------KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTV 137

Query: 124 HTDDTGRTTTQMSTLSS---NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELI 180
           +     R              Y   T      S      +        P           
Sbjct: 138 YFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP----------- 186

Query: 181 MPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ---PLNSSNILD 237
                    PQ   + +      G+   +               K G     +  ++   
Sbjct: 187 ---------PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQ 237

Query: 238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             Y   V +L +  V  +D G+Y C A+N +GT        
Sbjct: 238 DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 78.8 bits (194), Expect = 7e-17
 Identities = 27/197 (13%), Positives = 50/197 (25%), Gaps = 54/197 (27%)

Query: 189 PPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
              +     + T+ +GQ   L   +     +  VS  + G        +           
Sbjct: 89  AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--GF 146

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETK--------------------------------- 274
            I++    D   YVC    +   + +                                  
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQI 206

Query: 275 -CKLT-----------------PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 316
            C  T                  +  ++     Y   V +L +  V  +D G+Y C A+N
Sbjct: 207 VCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASN 266

Query: 317 SLGTAETKCKLTVRSTP 333
            +GT        V  + 
Sbjct: 267 DVGTRTATMNFQVVESH 283

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 27/194 (13%), Positives = 49/194 (25%), Gaps = 53/194 (27%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
           A   P       +  ++ G+ + L  V  G     V W     P  + +      ++  +
Sbjct: 1   ADPAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDP-----ESPGS 51

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETK------------------------------C 275
           +L  +    ++ G Y CT         T                               C
Sbjct: 52  TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPC 111

Query: 276 KLTPLNSSNILDLKYKNGV-------------ASLQIQEVFPEDEGVYVCTATNS-LGTA 321
            +T     + + L  + G                  I++    D   YVC    +   + 
Sbjct: 112 LITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGREST 171

Query: 322 ETKCKLTVRSTPAA 335
            T   L V      
Sbjct: 172 STGIWLKVNRVHPE 185

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 13/84 (15%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVV----SMEIIDCKPE 51
           +    G                    K      +   +  + D       ++ +     +
Sbjct: 196 LVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQ 255

Query: 52  DSGEYKCVATNKHGTDETNCVVIV 75
           D+G Y CVA+N  GT        V
Sbjct: 256 DAGIYSCVASNDVGTRTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 7/132 (5%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
              +V   +       R     +S       I   K  DS  Y C          +  + 
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWR-GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIW 176

Query: 74  IVESEEESKE---QQELAHNFLYSGDRKYIEKHIR--PAPAIIT-TRQEIKSSYSSHTDD 127
           +  +    +    + E +      G+   I            +   R + K     ++D 
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236

Query: 128 TGRTTTQMSTLS 139
                 ++  LS
Sbjct: 237 QDNYYKKVRALS 248

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 84.3 bits (209), Expect = 2e-20
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
            P +F   L ++   +G    L   +       V W K  + L   +   L+       L
Sbjct: 18  LPIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQDGARCEL 75

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           QI+ +  ED G Y+C      G   T   LT
Sbjct: 76  QIRGLVAEDAGEYLCMC----GKERTSAMLT 102

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 5   IKVKVGST-------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEY 56
            +   G+T            V+W+KG+  L     +S+        ++I     ED+GEY
Sbjct: 29  EEATEGATAVLRCELSKMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEY 88

Query: 57  KCVATNKHGTDETNCVVIVE 76
            C+     G + T+ ++ V 
Sbjct: 89  LCMC----GKERTSAMLTVR 104

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 89.0 bits (220), Expect = 2e-20
 Identities = 37/289 (12%), Positives = 76/289 (26%), Gaps = 38/289 (13%)

Query: 5   IKVKVGST-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59
           + + V ST          V W + ++E  +             + + +    D+GEY C 
Sbjct: 10  LVLNVSSTFVLTCSGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCT 69

Query: 60  ATNKHGTDETNCV---VIVESEEESKEQQELAHNFLYS--GDRKYIEKHIRPAPAIITTR 114
             +  G +        + V          +    F++        I   +     ++T  
Sbjct: 70  HNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLH 129

Query: 115 QEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRS 174
           ++          D  R  + +     +Y   T                    D    S +
Sbjct: 130 EKKGDVALPVPYDHQRGFSGIFE-DRSYICKTTIG-----------------DREVDSDA 171

Query: 175 TTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN 234
                +            +       +  G+ + L  +V G+      WT   +      
Sbjct: 172 YYVYRLQVS-----SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV 226

Query: 235 ILDLKYKNGVA-----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                +   +       L I     ED G Y C  T S+   + +  + 
Sbjct: 227 EPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 23/187 (12%), Positives = 44/187 (23%), Gaps = 50/187 (26%)

Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
           +TPP       +  ++       + V+       V W +  Q      +   +     + 
Sbjct: 3   VTPPG-----PELVLNVSS----TFVLTCSGSAPVVWERMSQEP-PQEMAKAQDGTFSSV 52

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETK-------------------------------- 274
           L +  +   D G Y CT  +S G    +                                
Sbjct: 53  LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITE 112

Query: 275 ----CKLTPLNSSNIL----DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK 326
               C++T       L               Q       ++  Y+C  T      ++   
Sbjct: 113 ITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAY 172

Query: 327 LTVRSTP 333
              R   
Sbjct: 173 YVYRLQV 179

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 6/68 (8%)

Query: 14  PPPTVKWYKGNREL-----SKRDYSMSYSDGVVS-MEIIDCKPEDSGEYKCVATNKHGTD 67
                +W    +E         D+ +     + S + I   + EDSG Y C  T      
Sbjct: 209 EVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDH 268

Query: 68  ETNCVVIV 75
           +    + +
Sbjct: 269 QDEKAINI 276

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 83.5 bits (207), Expect = 3e-20
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
           AM   +    L    +  G+       +  +P+    W   GQPL +S   ++       
Sbjct: 2   AMALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKH 60

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            L +        G     A N     ++   L 
Sbjct: 61  ILILHNCQLGMTGEVSFQAAN----TKSAANLK 89

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 62.7 bits (153), Expect = 9e-13
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 14/85 (16%)

Query: 1  MQNVIKVKVGST--------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPE 51
          +  V +V VG T        +P    +W    + L +  D  +        + + +C+  
Sbjct: 12 LYGV-EVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLG 70

Query: 52 DSGEYKCVATNKHGTDETNCVVIVE 76
           +GE    A N     ++   + V+
Sbjct: 71 MTGEVSFQAAN----TKSAANLKVK 91

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 83.5 bits (207), Expect = 3e-20
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
           +     F  +LT+  +++      +      P   V+W K    L +S       +    
Sbjct: 5   SSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTL 63

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            L I  +   D   Y C      G A+++ +L 
Sbjct: 64  RLTISALEKADSDTYTCDI----GQAQSRAQLL 92

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 70.1 bits (172), Expect = 3e-15
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 12 TKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
            P  TV W KG  EL +   +  S     + + I   +  DS  Y C      G  ++ 
Sbjct: 33 EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSR 88

Query: 71 CVVIVESEE 79
            ++V+   
Sbjct: 89 AQLLVQGRR 97

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 84.0 bits (208), Expect = 3e-20
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG-VASL 247
                  L D  + +G        +       V W  +  PL+++ + ++  + G    L
Sbjct: 13  RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVL 72

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            ++++  +D G     A    G       L 
Sbjct: 73  TLRQLALKDSGTIYFEA----GDQRASAALR 99

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 6/71 (8%)

Query: 11  STKPPPTVKWYKGNREL-SKRDYSMSYSDG-VVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
           S      V W+     L +     +    G    + +     +DSG     A    G   
Sbjct: 38  SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQR 93

Query: 69  TNCVVIVESEE 79
            +  + V  + 
Sbjct: 94  ASAALRVTEKP 104

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 84.3 bits (208), Expect = 5e-20
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-------------N 234
               F      +    G  ++L     G P P + W   GQ  N               +
Sbjct: 20  HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVH 79

Query: 235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           I    +++  +++ I  +  ED G Y C A+N            
Sbjct: 80  IHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 58.5 bits (141), Expect = 9e-11
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 14/76 (18%)

Query: 14  PPPTVKWYKGNRELSK--------------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59
           P P ++W+   +  +                 ++  +     ++ I     ED+G Y+C 
Sbjct: 49  PVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECR 108

Query: 60  ATNKHGTDETNCVVIV 75
           A+N    +       V
Sbjct: 109 ASNDPDRNHLTRAPRV 124

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 83.6 bits (207), Expect = 5e-20
 Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 1   MQNVIKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE 51
           ++     KVG           KP P V W KG   L      +  SD      +      
Sbjct: 30  LRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARS 89

Query: 52  DSGEYKCVATNKHGTDETNCVVIV 75
           DSGEY+     ++  D     + V
Sbjct: 90  DSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 81.3 bits (201), Expect = 3e-19
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 175 TTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN 234
           T +E+  PP     P              G+ L+L    +G P P+V WTK G PL++S 
Sbjct: 14  TIREIAEPP-KIRLPRHLRQTYI---RKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSR 69

Query: 235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           +  ++  +      +++    D G Y  +            ++ 
Sbjct: 70  V-HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 82.9 bits (205), Expect = 6e-20
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV---- 244
            P     L   T D   C+  +  VKG+P+P + W  NG  LN S  +  K         
Sbjct: 4   APTI-TFLESPTSDHHWCIPFT--VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 245 -ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
              LQ+      + G Y   A N  G  E +    
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 13 KPPPTVKWYKGNRELSKRDY------SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
           P P ++W+     L++  Y        ++++    +++ +    ++G+Y  +A N++G 
Sbjct: 28 NPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK 87

Query: 67 DETNCVVIVES 77
          DE         
Sbjct: 88 DEKQISAHFMG 98

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 89.5 bits (221), Expect = 7e-20
 Identities = 41/362 (11%), Positives = 92/362 (25%), Gaps = 59/362 (16%)

Query: 8   KVGSTKPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
           +V    P    TV   +G +EL +           V+  ++  +      + C       
Sbjct: 109 QVEGGAPRANLTVVLLRGEKELKREPAVGE--PAEVTTTVLVRRDHHGANFSCRTELDLR 166

Query: 66  TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHT 125
                      S     +   L          + +E   +             S    H 
Sbjct: 167 PQGLELFENT-SAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225

Query: 126 DDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDT 185
               +      T  ++  S+  + +  + +              ++S+ T + +     T
Sbjct: 226 ALGDQRLNPTVTYGNDSFSAKASVS-VTAEDEGTQRLTCAVILGNQSQETLQTV-----T 279

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
             + P     LT   + +G  + +        +  ++          +            
Sbjct: 280 IYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRA------------ 327

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKC------------KLTPLNSSNILDLK---- 289
            L ++    ++   + C+AT  +                   +L   +            
Sbjct: 328 QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQ 387

Query: 290 -----------------YKNGVASLQIQEVFP---EDEGVYVCTATNSLGTAETKCKLTV 329
                             K+G   L I E      + EG Y+C A ++ G    +  + V
Sbjct: 388 QTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447

Query: 330 RS 331
            S
Sbjct: 448 LS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 43/362 (11%), Positives = 92/362 (25%), Gaps = 65/362 (17%)

Query: 11  STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
           S   P  +        L K++  +   +     E+ +   ++  +  C +    G     
Sbjct: 24  SCDQPMLLGIET---PLPKKELLLP-GNNRKVYELSN--VQEDSQPMCYSNCPDGQSTAK 77

Query: 71  CVVIVESEEESKEQQELAHNFLYSGDRKYIE---KHIRPAPAIITT---RQEIKSSYSSH 124
             + V    E  E   L       G    +    +   P   +       ++      + 
Sbjct: 78  TFLTVYWTPERVELAPLPSWQ-PVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV 136

Query: 125 TDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD 184
            +    TTT +     + ++ +                 LD                   
Sbjct: 137 GEPAEVTTTVLVRRDHHGANFSCRTE-------------LDLRPQGLELFENTSAPYQLQ 183

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD---PEPRVSWTKNGQPLNSSNILDLKYK 241
           T + P      ++ + ++      +   + G     E +V      Q LN +        
Sbjct: 184 TFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYG---N 240

Query: 242 NGVASLQIQEVFPEDEGVY--VCTATNSLGTAETKCKLT----PLNSSNILDLKYKNG-- 293
           +  ++     V  EDEG     C       + ET   +T    P  +  +   +   G  
Sbjct: 241 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTE 300

Query: 294 -------------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 328
                                     A L ++    ++   + C+AT  +         T
Sbjct: 301 VTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT 360

Query: 329 VR 330
             
Sbjct: 361 RE 362

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 86.5 bits (214), Expect = 7e-20
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 189 PPQFANKL----TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-ILDLKYKNG 243
            P +            +     +       G+P P +SW KNG+     + I  +K ++ 
Sbjct: 11  APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             SL ++ V P D G Y C   N  G+      L 
Sbjct: 71  QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 82.3 bits (203), Expect = 2e-18
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
           S   T  L +   +   P   A    ++T   G  ++    V  D +P + W K+ +   
Sbjct: 97  SIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNG 156

Query: 232 SSNILDLKY------------KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           S    D                     L++  V   D G Y+C ATN +G AE    L+
Sbjct: 157 SKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 4   VIKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPED 52
           ++ V   +T          P P++ W K  RE     R   +       S+ +    P D
Sbjct: 24  LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSD 83

Query: 53  SGEYKCVATNKHGTDETNCVVIVESEEESK 82
            G Y CV  NK G+      + V      +
Sbjct: 84  RGNYTCVVENKFGSIRQTYTLDVLERSPHR 113

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 22/102 (21%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSK-------------RDYSMSYSDGVVS 42
               +GS             P ++W K                    + +     +  V 
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183

Query: 43  MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ 84
           + + +    D GEY C ATN  G  E    + V     ++E+
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE 225

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 85.4 bits (211), Expect = 8e-20
 Identities = 32/205 (15%), Positives = 54/205 (26%), Gaps = 61/205 (29%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS----SNILDLKYK 241
           AM      +   +  I +   + LS    G   PRV W  +          +N +   Y+
Sbjct: 1   AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60

Query: 242 NGV----ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------------------- 278
           + V      +  + V  ED G Y C  +   G +  + K+                    
Sbjct: 61  DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120

Query: 279 ---------------------------PLNSSNILDLKYKNGVASL-------QIQEVFP 304
                                       + ++      + N    L           +  
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180

Query: 305 EDEGVYVCTATNSLGTAETKCKLTV 329
            D G Y C A N  GT  T   + +
Sbjct: 181 SDTGEYSCEARNGYGTPMTSNAVRM 205

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 81.9 bits (202), Expect = 2e-18
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 8/102 (7%)

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
             + PP         +   G    L+ +   G P    +W K+G  + ++      + N 
Sbjct: 103 IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162

Query: 244 VA-------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                     L    +   D G Y C A N  GT  T   + 
Sbjct: 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 61.5 bits (149), Expect = 3e-11
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 13  KPPPTVKWYKGNREL----------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
            PP    W+K    +          S   Y ++ + G   +        D+GEY C A N
Sbjct: 135 SPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTG--ELVFDPLSASDTGEYSCEARN 192

Query: 63  KHGTDETNCVVIVESEE 79
            +GT  T+  V +E+ E
Sbjct: 193 GYGTPMTSNAVRMEAVE 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 48.4 bits (115), Expect = 7e-07
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 9/75 (12%)

Query: 11  STKPPPTVKWYKGNRELS-----KRDYSMSYSDGVV----SMEIIDCKPEDSGEYKCVAT 61
           S    P V+W     + +         + SY D V      +       ED+G Y C+ +
Sbjct: 29  SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVS 88

Query: 62  NKHGTDETNCVVIVE 76
            + G       V + 
Sbjct: 89  EEGGNSYGEVKVKLI 103

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 82.4 bits (204), Expect = 1e-19
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 1/101 (0%)

Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN 242
              +    +    + D T+   +       V  D +    W KNG  +  S  + + +  
Sbjct: 2   SSGSSGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVG 60

Query: 243 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSS 283
               L I +V PEDEG Y         +   K     +  S
Sbjct: 61  RFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVS 101

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 12  TKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
           +    T KWYK   E+   +  ++S+      + I D +PED G+Y  V      +   +
Sbjct: 33  SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALS--LS 90

Query: 71  CVVIVESEEESK 82
             +     + S 
Sbjct: 91  AKLNFLEIKVSG 102

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 82.6 bits (204), Expect = 1e-19
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV---- 244
           PP+    L +  +    C++   VV+G+P P + W  NGQPL  S I+ ++Y        
Sbjct: 8   PPRV-VSLEEPELRLEHCIE--FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             L   +    + G Y   A N LGTA       
Sbjct: 65  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 13 KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSM---EIIDCKPEDSGEYKCVATNKHGTD 67
           PPPT+ W    + L  SK  +   Y +G +S            ++G Y  +A N  GT 
Sbjct: 32 NPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA 91

Query: 68 ETNCVVIV 75
                  
Sbjct: 92 NQTINGHF 99

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK----NGV 244
           P      L D+ +  G  ++++  V  +   +V W KNG  L   +    +Y+       
Sbjct: 8   PVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAE 272
             L   +V  ED G Y          AE
Sbjct: 67  HILIFSDVVQEDRGRYQVITNGGQCEAE 94

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 12  TKPPPTVKWYKGNRELSKRD-----YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
           ++    V W K   EL++ D     Y          +   D   ED G Y+ +       
Sbjct: 33  SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG---- 88

Query: 67  DETNCVVIVESEE 79
            +    +IVE ++
Sbjct: 89  GQCEAELIVEEKQ 101

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 88.0 bits (218), Expect = 3e-19
 Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 6/145 (4%)

Query: 134 QMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFA 193
           ++         +      P  +I+        +                 D +   P+F 
Sbjct: 433 KIRDSIKTKYDAWPEPLPPLGRISNY------SSLRKHRPQEYSIRDAFWDRSEAQPRFI 486

Query: 194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVF 253
            K     + +GQ  +    V     P V+W K+ + L  S     +Y      L I  V 
Sbjct: 487 VKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVK 546

Query: 254 PEDEGVYVCTATNSLGTAETKCKLT 278
            +D+G Y   A NS GT E    L 
Sbjct: 547 GDDKGEYTVRAKNSYGTKEEIVFLN 571

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 77.6 bits (191), Expect = 8e-16
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 14  PPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
            PP V W+K +REL +   Y   Y+     + I   K +D GEY   A N +GT E    
Sbjct: 510 SPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVF 569

Query: 73  VIV 75
           + V
Sbjct: 570 LNV 572

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 86.3 bits (213), Expect = 4e-19
 Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 49/220 (22%)

Query: 161 NSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR 220
             +               L   P+ +   P    ++ + ++D G  + L   V+G    +
Sbjct: 130 EGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQ 189

Query: 221 VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPE-DEGVYVCTATNSLGTAETKCKLTP 279
             W       +++ +      +    L +  V  + +     C A N +G AE   ++  
Sbjct: 190 AGWILTELEQSATVMKSGGLPSL--GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247

Query: 280 LNSSNILDLK-----------------------YKNGVA--------------------- 295
              +++                             NG                       
Sbjct: 248 SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 307

Query: 296 --SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
              L++ +    + G Y   A N  G A           P
Sbjct: 308 HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 7e-08
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 8/70 (11%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVV--------SMEIIDCKPEDSGEYKCVATNKHG 65
           P P+++W      L++  +  +               + +      ++G Y  +A N  G
Sbjct: 274 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 333

Query: 66  TDETNCVVIV 75
               + +   
Sbjct: 334 QASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 10/62 (16%), Positives = 13/62 (20%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
                 W     E S           +           +     C A N  G  E +  V
Sbjct: 186 GLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQV 245

Query: 74  IV 75
            V
Sbjct: 246 NV 247

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 80.2 bits (198), Expect = 4e-19
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
           P     ++    +  G  L L   ++ D    ++W ++G  L  SN    + +     ++
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESN----RTRITGEEVE 63

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           +++  P D G+Y C  ++  G+  T   + 
Sbjct: 64  VRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 14 PPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
             ++ W +   +L + +   ++       +E+ D  P DSG Y CV ++  G+D T   
Sbjct: 36 DVQSINWLRDGVQLVESNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFS 91

Query: 73 VIV 75
          V V
Sbjct: 92 VNV 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 80.5 bits (199), Expect = 4e-19
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK 241
           P         F+ K     +  G      A  +     +V W + G  +++SN   L  +
Sbjct: 1   PEPGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATE 59

Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
               +L ++EV P D+G Y   A    G+++ K  L 
Sbjct: 60  GTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLK 92

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 13/81 (16%)

Query: 5  IKVKVGST--------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGE 55
          ++V  GS         +    V+W +G  ++S    Y ++      ++ + +  P D G 
Sbjct: 18 VEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGS 77

Query: 56 YKCVATNKHGTDETNCVVIVE 76
          Y  +A    G+ +    + V 
Sbjct: 78 YAVIA----GSSKVKFDLKVI 94

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 79.7 bits (197), Expect = 8e-19
 Identities = 23/90 (25%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
           P +F   L  K   +G    L   +       V W K  + L       LK       LQ
Sbjct: 8   PARFTQDLKTKEASEGATATLQCELSKVAP--VEWKKGPETLRDGGRYSLKQDGTRCELQ 65

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           I ++   D G Y C      G   T   LT
Sbjct: 66  IHDLSVADAGEYSCMC----GQERTSATLT 91

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 66.2 bits (162), Expect = 6e-14
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 13/84 (15%)

Query: 1  MQNVIKVKVGST-------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPED 52
          ++   +   G+T            V+W KG   L     YS+        ++I D    D
Sbjct: 15 LKTK-EASEGATATLQCELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVAD 73

Query: 53 SGEYKCVATNKHGTDETNCVVIVE 76
          +GEY C+     G + T+  + V 
Sbjct: 74 AGEYSCMC----GQERTSATLTVR 93

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 79.4 bits (196), Expect = 1e-18
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 184 DTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
              +   +      +   + G    LS  V    +  V+W K+G+ L+SS+ + ++    
Sbjct: 6   SGKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGC 64

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
              L +Q+    + G Y C A    G  +   +L 
Sbjct: 65  TRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQ 95

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 66.3 bits (162), Expect = 6e-14
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 5  IKVKVGST--------KPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGE 55
          ++ + G++        +    V WYK  ++LS      +        + +      ++GE
Sbjct: 21 VQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGE 80

Query: 56 YKCVATNKHGTDETNCVVIVESE 78
          Y C A    G  + +  + V  +
Sbjct: 81 YSCEA----GGQQLSFRLQVAGQ 99

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 82.2 bits (203), Expect = 2e-18
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
           A+    F  +  D  +  G+   L     KG PEP + W K+G PL+    +     + V
Sbjct: 105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164

Query: 245 A-----SLQIQEVFPEDEGVYVCTATNSLGTAET 273
                 +L I  V P DEG Y C A N +GT E+
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRES 198

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 76.8 bits (189), Expect = 1e-16
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--NGV-- 244
            P+     TD  +   +   L+  V+G PEP + W K+G+P++++     + +  +G   
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
               +Q    +D G Y C A N +G A ++
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 13 KPPPTVKWYKGNRELSKRD---YSMSYSDGVVSME--IIDCKPEDSGEYKCVATNKHGT 66
          KP PT++W+K    +S  +   + + + DG +     +   K +D GEY CVA N+ G 
Sbjct: 36 KPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQ 94

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVATNKHGTD 67
           P PT+ W K    L         +   V      ++ I + +P D G YKC+A N  GT 
Sbjct: 137 PEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196

Query: 68  ETNCVVIV 75
           E++   ++
Sbjct: 197 ESSYAKLI 204

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 81.5 bits (201), Expect = 2e-18
 Identities = 26/184 (14%), Positives = 48/184 (26%), Gaps = 48/184 (26%)

Query: 189 PPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG---- 243
              F     + T   G    L   +      P V W ++GQ L  ++    +   G    
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 244 -----VASLQIQEVFPEDEGVYVCTATNSLGTAETKC-KLT----------------PLN 281
                V+ L+I  +   D G Y C       T  ++   +                   N
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAAN 121

Query: 282 SSNILDLK------------YKNGVA---------SLQIQEVFPEDEGVYVCTATNSLGT 320
           +   L  +             ++ V             +          + C A N+ G 
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGV 181

Query: 321 AETK 324
             ++
Sbjct: 182 TTSR 185

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 70.3 bits (172), Expect = 1e-14
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVAS 246
             P F  +  D+T+      +LS   +G PEP  + W ++  PL ++            S
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP-----GHGPQRS 159

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETK 274
           L +  +       + C A N+ G   ++
Sbjct: 160 LHVPGL--NKTSSFSCEAHNAKGVTTSR 185

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 9  VGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVV----------SMEIIDCKPEDSGEYKC 58
          +     PP V W +  + L   D + +                 + I   +  D+G+Y+C
Sbjct: 26 LQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQC 85

Query: 59 VATNKHGTDET 69
          +    H T  +
Sbjct: 86 LVFLGHQTFVS 96

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 7/64 (10%)

Query: 13  KPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
            P P  + W +    L+                +       +  + C A N  G   +  
Sbjct: 133 PPEPVDLLWLQDAVPLATAPGHGPQR------SLHVPGLNKTSSFSCEAHNAKGVTTSRT 186

Query: 72  VVIV 75
             I 
Sbjct: 187 ATIT 190

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 78.7 bits (194), Expect = 3e-18
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK----NGV 244
           PP+     +D  +  G+   L+   +G P P + W K G+ + +       ++    +G 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG- 67

Query: 245 ASLQIQEVF-----PEDEGVYVCTATNSLGTAETK 274
            SL    +        DEGVYVC A N LG A + 
Sbjct: 68  -SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 14  PPPTVKWYKGNRELS-----KRDYSMSYSDG---VVSMEIIDCKPEDSGEYKCVATNKHG 65
           P PT++WYKG   +       R + M    G    + +        D G Y CVA N  G
Sbjct: 37  PTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96

Query: 66  TDET-NCVVIVESEEESKEQQ 85
              + +  + V +        
Sbjct: 97  EAVSHDASLEVAAAAHHHHHH 117

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 81.6 bits (201), Expect = 3e-18
 Identities = 25/206 (12%), Positives = 46/206 (22%), Gaps = 62/206 (30%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA---- 245
                  +D  + + + + L+    G   PRV W        +    + +     A    
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 246 ----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----------------------- 278
                +    V  +D G Y C  +   G    +  +                        
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121

Query: 279 -----------------------PLNSSNILDLKYKN--------GVASLQIQEVFPEDE 307
                                   + +++    +               L    V   D 
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181

Query: 308 GVYVCTATNSLGTAETKCKLTVRSTP 333
           G Y C A N  GTA       + +  
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 79.2 bits (195), Expect = 2e-17
 Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN- 242
           T + PP         ++  G    L+ +   G P    SW K+G  + +++    +    
Sbjct: 100 TVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159

Query: 243 -------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                      L    V   D G Y C A N  GTA       
Sbjct: 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 13  KPPPTVKWYKGNRELSKRDYSMSYSDGVVSME---------IIDCKPEDSGEYKCVATNK 63
            PP    W+K    +   D   + +    S                  DSGEY C A N 
Sbjct: 132 SPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG 191

Query: 64  HGTDETNCVVIVESEE 79
           +GT   +    +++ E
Sbjct: 192 YGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 11  STKPPPTVKWYKGNRELSK-----RDYSMSYSDGVV----SMEIIDCKPEDSGEYKCVAT 61
           S    P V+W       +         +  Y+D V      +       +D+GEY C+ +
Sbjct: 26  SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVS 85

Query: 62  NKHGTDETNCVVIVE 76
            + G +     + + 
Sbjct: 86  EEGGQNYGEVSIHLT 100

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 81.0 bits (200), Expect = 4e-18
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 180 IMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK 239
           ++P  + M  P+           +G  ++++  V   P   +SW ++GQ L SSN  ++K
Sbjct: 10  LVPRGSHMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIK 68

Query: 240 YKN--GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             N    + L++      D G Y CTA N +G    +  L 
Sbjct: 69  IYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 66.4 bits (162), Expect = 5e-13
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKPED 52
           +    G+           P  T+ W++  + L   +     +  +     +E+      D
Sbjct: 28  VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEND 87

Query: 53  SGEYKCVATNKHGTDETNCVVIV 75
            G Y C A N+ G +    +++ 
Sbjct: 88  FGNYNCTAVNRIGQESLEFILVQ 110

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 77.4 bits (191), Expect = 5e-18
 Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
           +  Q   + T + +  G  L L  V  G P P   W KN  PL                 
Sbjct: 2   SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET---------KKLY 52

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETK 274
            +  V  E +G Y C   N   + ++K
Sbjct: 53  MVPYVDLEHQGTYWCHVYNDRDSQDSK 79

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 17/84 (20%)

Query: 7  VKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYK 57
          +  GST          P P  +W+K    L+                +     E  G Y 
Sbjct: 15 LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK--------LYMVPYVDLEHQGTYW 66

Query: 58 CVATNKHGTDETNCVVIVESEEES 81
          C   N   + ++  V I+  E  +
Sbjct: 67 CHVYNDRDSQDSKKVEIIIDELNN 90

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)

Query: 290 YKNGV-------ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
           +KN +           +  V  E +G Y C   N   + ++K    +
Sbjct: 38  FKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 81.1 bits (199), Expect = 3e-17
 Identities = 38/305 (12%), Positives = 78/305 (25%), Gaps = 54/305 (17%)

Query: 11  STKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSME-----IIDCKPEDSGEYKCVATNKH 64
           +     T+ WY        +   +    +  +S E            D+G Y C+  N  
Sbjct: 43  AHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTT 102

Query: 65  GTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSH 124
              +    + V  ++                   +      P   +       + +  + 
Sbjct: 103 YCSKVAFPLEVVQKDSC-----------------FNSPMKLPVHKLYIEYGIQRITCPNV 145

Query: 125 TDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS--------------PS 170
                 +     T         N      + +       L +++                
Sbjct: 146 DGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTF 205

Query: 171 RSRSTTKELIMPPDTAMTPPQFANKL--TDKTIDDGQCLDLSAVV----KGDPEPRVSWT 224
               T    ++       PP   +         + G+ L +   V      D    V WT
Sbjct: 206 HLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWT 265

Query: 225 KNGQPLN----------SSNILDLKYKNGVASLQIQEVFPEDEGV-YVCTATNSLGTAET 273
            +G+  +          S +    + +     L I++V  ED    YVC A ++ G    
Sbjct: 266 IDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAK 325

Query: 274 KCKLT 278
             K+ 
Sbjct: 326 AAKVK 330

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 63.3 bits (153), Expect = 2e-11
 Identities = 16/170 (9%), Positives = 31/170 (18%), Gaps = 53/170 (31%)

Query: 203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV-----ASLQIQEVFPEDE 257
               L  +          + W    Q  +    ++ +            L  +     D 
Sbjct: 32  FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91

Query: 258 GVYVCTATNSLGTAETKCKLTPLNSSNILDLK---------------------------- 289
           G Y C   N+   ++    L  +   +  +                              
Sbjct: 92  GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151

Query: 290 --------YKNGVA------------SLQIQEVFPEDEGVYVCTATNSLG 319
                   Y                 +L        + G Y C  T    
Sbjct: 152 SVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPEN 201

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 12/78 (15%)

Query: 11  STKPPPTVKWYKGNRELSKRDYSMSYSDGV-----------VSMEIIDCKPED-SGEYKC 58
                  V W    ++       ++ ++ +             + I     ED    Y C
Sbjct: 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVC 314

Query: 59  VATNKHGTDETNCVVIVE 76
            A +  G       V  +
Sbjct: 315 HARSAKGEVAKAAKVKQK 332

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 8/50 (16%), Positives = 13/50 (26%)

Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKES 345
            L  +     D G Y C   N+   ++    L V    +           
Sbjct: 80  VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVH 129

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 76.1 bits (187), Expect = 3e-17
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV---- 244
            P    +L         C+     V G P P + W  NG  LN ++ +  ++        
Sbjct: 3   MPASV-QLHTAVEMHHWCI--PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59

Query: 245 ---ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                L++ +    + G Y   A N  G A       
Sbjct: 60  VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 60.7 bits (147), Expect = 1e-11
 Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 14 PPPTVKWYKGNRELSKRDY--------SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 65
          P P+++W      L++  +        + + +     + +      ++G Y  +A N  G
Sbjct: 28 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 87

Query: 66 TDETNCVVIV 75
              + +   
Sbjct: 88 QASASIMAAF 97

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 75.5 bits (186), Expect = 3e-17
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 188 TPPQFANKLTDKT-IDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
           +   FA  L     +D G  +     +  DP+  V W KNGQ +  S     ++K     
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           L I      D+  Y  TA    G  +   +L 
Sbjct: 65  LFINNCQMTDDSEYYVTA----GDEKCSTELF 92

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 13/86 (15%)

Query: 1  MQNVIKVKVGST--------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPE 51
          +    +V  G           P   VKWYK  +E+     Y   +      + I +C+  
Sbjct: 14 LDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMT 73

Query: 52 DSGEYKCVATNKHGTDETNCVVIVES 77
          D  EY   A    G ++ +  + V S
Sbjct: 74 DDSEYYVTA----GDEKCSTELFVRS 95

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 75.6 bits (186), Expect = 4e-17
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
           +   + +          + + L+  +   P   V WTK+G+ +  S  L L+ ++ V  L
Sbjct: 12  SWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRL 70

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            +  V  ED G Y+C              +T
Sbjct: 71  VLPAVQLEDSGEYLCEI----DDESASFTVT 97

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 12 TKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
           +P   V+W K   E+ +     +   D V  + +   + EDSGEY C        +  +
Sbjct: 38 CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESAS 93

Query: 71 CVVIVE 76
            V V 
Sbjct: 94 FTVTVT 99

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 74.7 bits (184), Expect = 6e-17
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--NGVA 245
           +      +L D T   G+ ++L   V  + +  V W KNG+ +        + +      
Sbjct: 6   SGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            L I+     D   Y    T      ++  KL+
Sbjct: 65  ILIIEGATKADAAEYSVMTTG----GQSSAKLS 93

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 12 TKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
          ++    VKW+K   E+    K  Y +        + I      D+ EY  + T      +
Sbjct: 32 SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQ 87

Query: 69 TNCVVIVESEE 79
          ++  + V+ + 
Sbjct: 88 SSAKLSVDLKS 98

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 74.3 bits (183), Expect = 9e-17
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 188 TPPQFANKLTD-KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVA 245
               F  KL     +  G  + L+  +  D +  V W KNGQ +  S      +      
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAE 272
           +L I +    D+  Y C       + E
Sbjct: 73  TLTISQCSLADDAAYQCVVGGEKCSTE 99

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 69.3 bits (170), Expect = 5e-15
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 14/86 (16%)

Query: 1   MQNVIKVKVGS--------TKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKP 50
           ++   +V  G               VKW K  +E+  S   Y         ++ I  C  
Sbjct: 22  LEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSL 81

Query: 51  EDSGEYKCVATNKHGTDETNCVVIVE 76
            D   Y+CV     G ++ +  + V+
Sbjct: 82  ADDAAYQCVV----GGEKCSTELFVK 103

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 77.4 bits (190), Expect = 3e-16
 Identities = 42/308 (13%), Positives = 83/308 (26%), Gaps = 66/308 (21%)

Query: 8   KVGSTKPPPT----VKWYKGNRELSKRDYSMSY-------------------SDGVVSME 44
            +       T    + W +     S   +  +                         S+ 
Sbjct: 23  YLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82

Query: 45  IIDCKPEDSGEYKC-VATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKH 103
           +   + ED G Y C   T   G+   +  + V ++ ++            +G+   + + 
Sbjct: 83  MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN---TAEVQKVQLTGEPVPMARC 139

Query: 104 I----RPAPAII--TTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNN------ATS 151
           +    RP   I   +    + ++ S        T T  S      SS  +          
Sbjct: 140 VSTGGRPPAQITWHSDLGGMPNT-SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEH 198

Query: 152 PSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSA 211
            S +  + +   L    P          I   D             +          L+ 
Sbjct: 199 ESFEKPQLLTVNLTVYYPPE------VSISGYD-------------NNWYLGQNEATLTC 239

Query: 212 VVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
             + +PEP   +W+    PL    +           L I+ V        +C  TN+LG 
Sbjct: 240 DARSNPEPTGYNWSTTMGPLPPFAVAQ----GA--QLLIRPVDKPINTTLICNVTNALGA 293

Query: 271 AETKCKLT 278
            + +  + 
Sbjct: 294 RQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 73.2 bits (179), Expect = 8e-15
 Identities = 22/206 (10%), Positives = 48/206 (23%), Gaps = 50/206 (24%)

Query: 169 PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNG 227
           P  SRS    L +     +  PQ   ++    +              G P  +++W  + 
Sbjct: 102 PQGSRSVDIWLRV-----LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL 156

Query: 228 QPLNSSN---ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT------ 278
             + +++             +   +      D     C   +          +       
Sbjct: 157 GGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP 216

Query: 279 ------PLNSSNI-----LDLK--------------YKNGVA----------SLQIQEVF 303
                   +++         L                                L I+ V 
Sbjct: 217 PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVD 276

Query: 304 PEDEGVYVCTATNSLGTAETKCKLTV 329
                  +C  TN+LG  + +  + V
Sbjct: 277 KPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 48.9 bits (116), Expect = 8e-07
 Identities = 10/62 (16%), Positives = 13/62 (20%), Gaps = 5/62 (8%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
            P    W      L               + I       +    C  TN  G  +    V
Sbjct: 246 EPTGYNWSTTMGPLPPF---AVAQGA--QLLIRPVDKPINTTLICNVTNALGARQAELTV 300

Query: 74  IV 75
            V
Sbjct: 301 QV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 38/143 (26%)

Query: 197 TDKTIDDGQCLDLSAVVKGDPEP-----RVSWTKNGQPLNSSNILDLKYKNGVASLQIQE 251
           T      G  + L   ++          +++W ++G+  + +              Q   
Sbjct: 8   TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVF---------HQTQGPS 58

Query: 252 VFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYV 311
                   +V     +                       +   ASL++  +  EDEG Y 
Sbjct: 59  YSESKRLEFVAARLGA-----------------------ELRNASLRMFGLRVEDEGNYT 95

Query: 312 CTA-TNSLGTAETKCKLTVRSTP 333
           C   T   G+      L V + P
Sbjct: 96  CLFVTFPQGSRSVDIWLRVLAKP 118

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 72.5 bits (178), Expect = 3e-16
 Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 182 PPDTAMTPPQFA-NKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLK 239
           P      P      +   +++  G  +          P   + WT+       S  +D  
Sbjct: 2   PLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD-- 59

Query: 240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             NG   L I+ V P D G YVCT +N     +    L 
Sbjct: 60  -FNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 57.1 bits (138), Expect = 8e-11
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 16/86 (18%)

Query: 2  QNVIKVKVGST----------KPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKP 50
          Q    V+ G+            P  T+ W +  N +L  R       +G   + I + +P
Sbjct: 17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR---AMDFNG--ILTIRNVQP 71

Query: 51 EDSGEYKCVATNKHGTDETNCVVIVE 76
           D+G Y C  +N    D+    + V+
Sbjct: 72 SDAGTYVCTGSNMFAMDQGTATLHVQ 97

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 73.9 bits (181), Expect = 8e-16
 Identities = 26/172 (15%), Positives = 45/172 (26%), Gaps = 42/172 (24%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN-----------------GVAS 246
           G  ++L+         +  W  + Q     N      K                  G   
Sbjct: 10  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL-------------------- 286
           L I+ +  ED   Y+C   +     +        NS   L                    
Sbjct: 70  LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSV 129

Query: 287 -----DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
                  K   G  +L + ++  +D G + CT   +    E K  + V +  
Sbjct: 130 QCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 60.4 bits (146), Expect = 5e-11
 Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 10/81 (12%)

Query: 198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDE 257
           D  +  GQ L L+        P V                        +L + ++  +D 
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG----------KTLSVSQLELQDS 155

Query: 258 GVYVCTATNSLGTAETKCKLT 278
           G + CT   +    E K  + 
Sbjct: 156 GTWTCTVLQNQKKVEFKIDIV 176

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 51.1 bits (122), Expect = 7e-08
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 9/63 (14%)

Query: 13  KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
              P+V+      +  +   ++S         +   + +DSG + C         E    
Sbjct: 124 GSSPSVQCRSPRGKNIQGGKTLS---------VSQLELQDSGTWTCTVLQNQKKVEFKID 174

Query: 73  VIV 75
           ++V
Sbjct: 175 IVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 27/104 (25%)

Query: 1   MQNVIKVKVGST---------KPPPTVKWYKGNREL------------------SKRDYS 33
           M+ V+  K G T         K      W   N+                          
Sbjct: 1   MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR 60

Query: 34  MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 77
             +  G   + I + K EDS  Y C   ++    +     +  +
Sbjct: 61  SLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN 104

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 76.3 bits (187), Expect = 9e-16
 Identities = 34/263 (12%), Positives = 69/263 (26%), Gaps = 32/263 (12%)

Query: 26  ELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC-VATNKHGTDETNCVVIVESE---EES 81
              +R   +  S    ++ +   + ED G Y C  AT   G  E+   + V ++      
Sbjct: 77  PYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIE 136

Query: 82  KEQQELAHNFLYSGDRKYIE---KHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTL 138
             Q  L                  + +P   +    +    +      +   T T +S  
Sbjct: 137 GTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRY 196

Query: 139 SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIM--PPDTAMTPPQFANKL 196
               S   +      + +   +      +        +  L +   P+  +         
Sbjct: 197 RLVPSREAHQ-----QSLACIV------NYHMDRFKESLTLNVQYEPEVTIEGFD----- 240

Query: 197 TDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPE 255
                     + L+     +P      WT     L                     +   
Sbjct: 241 -GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ-----NRTLFFKGPINYS 294

Query: 256 DEGVYVCTATNSLGTAETKCKLT 278
             G Y+C ATN +GT   + ++ 
Sbjct: 295 LAGTYICEATNPIGTRSGQVEVN 317

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 68.2 bits (166), Expect = 4e-13
 Identities = 26/211 (12%), Positives = 51/211 (24%), Gaps = 45/211 (21%)

Query: 167 DSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTK 225
            + +R       ++  P   +   Q    L  K   D + L  +     G P   VSW  
Sbjct: 115 PTGNRESQLNLTVMAKPTNWIEGTQ--AVLRAKKGQDDKVLVATCTSANGKPPSVVSWET 172

Query: 226 NGQPLNSSNILDLKYKNGVAS--LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----- 278
             +       +             ++       +    C     +   +    L      
Sbjct: 173 RLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEP 232

Query: 279 -----PLNSSNIL---DLK----------------YKNGVA-----------SLQIQEVF 303
                  + +  L   D+K                     +                 + 
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPIN 292

Query: 304 PEDEGVYVCTATNSLGTAETKCKLTVRSTPA 334
               G Y+C ATN +GT   + ++ +    A
Sbjct: 293 YSLAGTYICEATNPIGTRSGQVEVNITEAAA 323

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 49.0 bits (116), Expect = 8e-07
 Identities = 16/65 (24%), Positives = 19/65 (29%), Gaps = 5/65 (7%)

Query: 13  KPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
            PP T   W   N  L K       +               +G Y C ATN  GT     
Sbjct: 259 NPPATEYHWTTLNGSLPKG----VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQV 314

Query: 72  VVIVE 76
            V + 
Sbjct: 315 EVNIT 319

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 37/150 (24%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP----RVSWTKNGQPLNSSNILDLKYKNGV 244
           P Q            G  + L              +V+W K+      +           
Sbjct: 14  PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQN----------- 62

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFP 304
                           V     S+G       +       +  L+      ++++  +  
Sbjct: 63  ----------------VAIYNPSMGV-----SVLAPYRERVEFLRPSFTDGTIRLSRLEL 101

Query: 305 EDEGVYVCTA-TNSLGTAETKCKLTVRSTP 333
           EDEGVY+C   T   G  E++  LTV + P
Sbjct: 102 EDEGVYICEFATFPTGNRESQLNLTVMAKP 131

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 71.6 bits (175), Expect = 2e-15
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 12/103 (11%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTKN---------GQPLNSSNI 235
           +   F  K    T+  G+ +   A VK +    +P + W K          G+ L     
Sbjct: 6   SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65

Query: 236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            +   +     +QI +      G Y C  T           L 
Sbjct: 66  FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 69.6 bits (170), Expect = 8e-15
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 6   KVKVGSTKPPPTVKWYKGN----------RELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
           KVK       PT+KW+KG               K  +          M+II  K   +G 
Sbjct: 30  KVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN 89

Query: 56  YKCVATNKHGTDETNCVVIVESEEESKEQQE 86
           Y+C  T K   D  +  + V     +    +
Sbjct: 90  YRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 189 PPQFA--NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
           P            T    + + L+  +    +   +W K+GQ +  S +L +K       
Sbjct: 8   PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHR 66

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAE 272
           L + E   +D G + C          
Sbjct: 67  LILPEAKVQDSGEFECRTEGVSAFFG 92

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 12 TKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
          ++      WYK  +++       +        + + + K +DSGE++C            
Sbjct: 35 SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT----EGVSAF 90

Query: 71 CVVIVE 76
            V V+
Sbjct: 91 FGVTVQ 96

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 72.8 bits (178), Expect = 2e-15
 Identities = 30/182 (16%), Positives = 45/182 (24%), Gaps = 57/182 (31%)

Query: 200 TIDDGQCLDLSAVVKGDPEPRVS--WTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDE 257
             D G  + L+  +           W K G  L    +            + +    +  
Sbjct: 9   VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------QKTEFKVDSDDQW 61

Query: 258 GVYVCTATNSLG--------------------------TAETKCK--------------- 276
           G Y C                                 TA   CK               
Sbjct: 62  GEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 121

Query: 277 ------LTPLNSSNILDLKYKNGVASLQIQEVFPE-DEGVYVCTATNSLGTAETKCKLTV 329
                      S +   +    G + L I+ +  E D G Y C  T+S G+ +    L V
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

Query: 330 RS 331
           RS
Sbjct: 182 RS 183

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 57.0 bits (137), Expect = 7e-10
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPL------NSSNILDLKYK 241
           PP+     + + I++G+   L    +  P     +W K            S +   +   
Sbjct: 83  PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 142

Query: 242 NGVASLQIQEVFPE-DEGVYVCTATNSLGTAETKCKLT 278
            G + L I+ +  E D G Y C  T+S G+ +    L 
Sbjct: 143 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 51.2 bits (122), Expect = 6e-08
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 8   KVGSTKPPPTVKWYKGNREL-------SKRDYSMSYSDGVVSMEIIDCKPE-DSGEYKCV 59
           K  S  P     WYK            S+  + +S S G   + I +   E D G+Y+C 
Sbjct: 106 KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN 165

Query: 60  ATNKHGTDETNCVVIVES 77
            T+  G+D+    + V S
Sbjct: 166 GTSSKGSDQAIITLRVRS 183

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 11/60 (18%), Positives = 15/60 (25%), Gaps = 6/60 (10%)

Query: 10 GSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
           S       +W KG   L +              E      +  GEY CV   +      
Sbjct: 24 DSATEVTGHRWLKGGVVLKEDALPGQ------KTEFKVDSDDQWGEYSCVFLPEPMGTAN 77

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 74.4 bits (182), Expect = 5e-15
 Identities = 50/391 (12%), Positives = 99/391 (25%), Gaps = 93/391 (23%)

Query: 2   QNVIKVKVGST---------KPPPTVKWYKGNREL------------------SKRDYSM 34
           + V+  K G T         K      W   N+                           
Sbjct: 1   KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60

Query: 35  SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV-VIVESEEESKEQQELAHNFLY 93
            +  G   + I + K EDS  Y C   ++    +     +   S+    + Q L      
Sbjct: 61  LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLES 120

Query: 94  SGDRKYIEKHIRPAPAIITTRQEIKSSYSSHT--------DDTGRTTTQMSTLSSNYSSS 145
                        +P++       K+     T         D+G            +   
Sbjct: 121 PPG---------SSPSVQCRSPRGKNIQGGKTLSVSQLELQDSG-----------TW--- 157

Query: 146 TNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQ 205
           T       KK+  +++ ++     + S    KE     +       F    T + +    
Sbjct: 158 TCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKE----GEQVEFS--FPLAFTVEKLTGSG 211

Query: 206 CLDLSAVVKGDPEPRVSWT-KNGQPLNSSNILDLKY---KNGVASLQIQEVFP--EDEGV 259
            L   A      +  +++  KN +        D K    K     L + +  P     G 
Sbjct: 212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN 271

Query: 260 YVCTATNSLGTAETK----------------CKLTPLNSSNILDLKYKNGVAS-----LQ 298
                    G    +                C++    S  ++         +      +
Sbjct: 272 LTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK 331

Query: 299 IQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
              V   + G++ C  ++S G    +  + V
Sbjct: 332 AVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 68.3 bits (166), Expect = 5e-13
 Identities = 26/172 (15%), Positives = 49/172 (28%), Gaps = 42/172 (24%)

Query: 204 GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN-----------------GVAS 246
           G  ++L+         +  W  + Q     N      K                  G   
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKC-KLTPLNSSNIL------------------- 286
           L I+ +  ED   Y+C   +     +     LT  + +++L                   
Sbjct: 69  LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSV 128

Query: 287 -----DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
                  K   G  +L + ++  +D G + CT   +    E K  + V +  
Sbjct: 129 QCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 180

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 73.5 bits (180), Expect = 5e-15
 Identities = 29/199 (14%), Positives = 49/199 (24%), Gaps = 58/199 (29%)

Query: 189 PPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTK-NGQPLNSSNILDLKYKNGVAS 246
              +     +  + + Q   L   +     E  VS  +  G+PL           +G   
Sbjct: 89  ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG--- 145

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETK-------------------------------- 274
             I          Y C+A        +                                 
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQ 205

Query: 275 --C------------------KLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 314
             C                  KL     S+  + +Y+  V +L + +V  +  G Y C A
Sbjct: 206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQK-VLTLNLDQVDFQHAGNYSCVA 264

Query: 315 TNSLGTAETKCKLTVRSTP 333
           +N  G   T     V  + 
Sbjct: 265 SNVQGKHSTSMFFRVVESA 283

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 26/194 (13%), Positives = 39/194 (20%), Gaps = 53/194 (27%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
           A + P     + +  +  G  + L  V  G     V W     P        L      +
Sbjct: 1   AGSIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSP-----HWTLYSDGSSS 51

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETK------------------------------C 275
            L       ++ G Y CT                                         C
Sbjct: 52  ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPC 111

Query: 276 KLTPLNSSNILDLKYKNGV-------------ASLQIQEVFPEDEGVYVCTATNSLGTAE 322
            LT       + L    G                  I          Y C+A        
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVM 171

Query: 323 TKC-KLTVRSTPAA 335
           +   +L V+     
Sbjct: 172 SISIRLKVQKVIPG 185

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 14  PPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
               V     N +L    + D+  +    V+++ +     + +G Y CVA+N  G   T+
Sbjct: 215 VNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTS 274

Query: 71  CVVIV 75
               V
Sbjct: 275 MFFRV 279

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 1/67 (1%)

Query: 8   KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
            +        V   +       R  + S+S       I   K   S +Y+C A       
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH-GFTIHRAKFIQSQDYQCSALMGGRKV 170

Query: 68  ETNCVVI 74
            +  + +
Sbjct: 171 MSISIRL 177

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 4/60 (6%)

Query: 17 TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76
          +V+W              S S     +   +   +++G Y+C              + V+
Sbjct: 31 SVEWDGPPSPHWTLYSDGSSS----ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVK 86

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 73.2 bits (179), Expect = 6e-15
 Identities = 40/283 (14%), Positives = 77/283 (27%), Gaps = 71/283 (25%)

Query: 13  KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
                V    G++ L+      + S    +   +  + E +    C     + + ET   
Sbjct: 33  VSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 92

Query: 73  VIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTT 132
           V +                           +  PAP +I T+ E+           G   
Sbjct: 93  VTI---------------------------YSFPAPNVILTKPEVSE---------GTEV 116

Query: 133 T--------QMSTLSSNYSSSTNNATSPSKKITRRMNSI-------LDTDSPSRSRSTTK 177
           T           TL+   +           K T   N         L+       ++ T+
Sbjct: 117 TVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR 176

Query: 178 ELIMPPDTAMTPPQF--ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI 235
           EL       +  P+    +   + T  +           G+P P +   K+G        
Sbjct: 177 EL-----RVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP----- 226

Query: 236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                   +   +   V  + EG Y+C A ++ G    +  + 
Sbjct: 227 --------LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 261

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 30/163 (18%), Positives = 46/163 (28%), Gaps = 51/163 (31%)

Query: 212 VVKGDP-------EPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 264
           V +G          PR   T NG P               A L ++    ++   + C+A
Sbjct: 110 VSEGTEVTVKCEAHPRAKVTLNGVPAQPLG--------PRAQLLLKATPEDNGRSFSCSA 161

Query: 265 TNSLGTAETKCKLT----------------------PLNSSNILDLK-----------YK 291
           T  +         T                      P NS      +            K
Sbjct: 162 TLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK 221

Query: 292 NGVASLQIQEVFP---EDEGVYVCTATNSLGTAETKCKLTVRS 331
           +G   L I E      + EG Y+C A ++ G    +  + V S
Sbjct: 222 DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 14/65 (21%)

Query: 14  PPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
           P P +K  K G   L                E +    +  G Y C A +  G       
Sbjct: 213 PLPELKCLKDGTFPLP-------------IGESVTVTRDLEGTYLCRARSTQGEVTREVT 259

Query: 73  VIVES 77
           V V S
Sbjct: 260 VNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 29/201 (14%), Positives = 56/201 (27%), Gaps = 46/201 (22%)

Query: 180 IMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD---PEPRVSWTKNGQPLNSSNIL 236
           ++P     TPPQ     + + ++      +   + G     E +V      Q LN +   
Sbjct: 1   VLPA----TPPQLV---SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY 53

Query: 237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT----PLNSSNILDLKYKN 292
                +  AS+ +     E      C       + ET   +T    P  +  +   +   
Sbjct: 54  GNDSFSAKASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE 112

Query: 293 G---------------------------VASLQIQEVFPEDEGVYVCTATNSLG----TA 321
           G                            A L ++    ++   + C+AT  +       
Sbjct: 113 GTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHK 172

Query: 322 ETKCKLTVRSTPAANLGKSPS 342
               +L V   P  +    P 
Sbjct: 173 NQTRELRVLYGPRLDERDCPG 193

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 72.9 bits (178), Expect = 1e-14
 Identities = 41/291 (14%), Positives = 69/291 (23%), Gaps = 41/291 (14%)

Query: 7   VKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE-YKCVATNKHG 65
           +          V W K  +    R  +    +G   + I +    DS   Y C  T K+G
Sbjct: 59  LSHRYNDKDNVVNWEKIGKTR--RPLNRRVKNG--DLWIANYTSNDSHRRYLCTVTTKNG 114

Query: 66  TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTR-----QEIKSS 120
                 V     +  S   +       +      +   I  A            QE+   
Sbjct: 115 DCVQGIVRSHIRKPPSCIPETYELG-THDKYGIDLYCGILYAKHYNNITWYKNNQELIID 173

Query: 121 YSSHTDDTGRTTTQMSTLSS--NYS-SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTK 177
            + ++            L     Y      +       I      IL        R    
Sbjct: 174 GTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFK-- 231

Query: 178 ELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP----RVSWTKNGQPLNSS 233
            LI+ P   +T               G+  +++              + W      +   
Sbjct: 232 -LILDPKINVTI--------------GEPANITCTAVSTSLLVDDVLIDWENPSGWIIGL 276

Query: 234 N-----ILDLKYKNGVASLQIQEVFPEDEG-VYVCTATNSLGTAETKCKLT 278
           +     IL        A+L  + V  E  G  Y C   N          + 
Sbjct: 277 DFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 56.8 bits (136), Expect = 2e-09
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
            +   +   K    + WYK N+EL       S S    ++ I + + EDSG Y C     
Sbjct: 147 DLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ--NLIIHNPELEDSGRYDCYVHYD 204

Query: 64  HGTDETNCVVIV 75
               + + VV  
Sbjct: 205 DVRIKNDIVVSR 216

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 7/71 (9%)

Query: 13  KPPPTVKWYKGNRELSKRDYSM------SYSDGVVSMEIIDCKPEDSGE-YKCVATNKHG 65
                + W   +  +   D+ +      S      ++   +   E  G  Y C   N + 
Sbjct: 259 VDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318

Query: 66  TDETNCVVIVE 76
                  V++E
Sbjct: 319 DKTLTTTVVLE 329

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 71.9 bits (176), Expect = 2e-14
 Identities = 32/205 (15%), Positives = 52/205 (25%), Gaps = 60/205 (29%)

Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQ 228
            RS     E+           +           +G+ L L     K      V + +NG+
Sbjct: 71  GRSDPIQLEIHRGWLLLQVSSR--------VFTEGEPLALRCHAWKDKLVYNVLYYRNGK 122

Query: 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT---------- 278
                      + N   +L I +      G Y C+             +T          
Sbjct: 123 AFKFF------HWNS--NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVL 174

Query: 279 ------PLNSSNILDL------------------KYKNGV--------ASLQIQEVFPED 306
                 PL   N++ L                   Y            +  QI     ED
Sbjct: 175 NASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARRED 234

Query: 307 EGVYVCTATNSLGTAETK-CKLTVR 330
            G+Y C A    G    +  +L ++
Sbjct: 235 SGLYWCEAATEDGNVLKRSPELELQ 259

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 71.1 bits (174), Expect = 3e-14
 Identities = 30/172 (17%), Positives = 48/172 (27%), Gaps = 44/172 (25%)

Query: 198 DKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPED 256
             ++   + + L   V   P      W  NG    +S            S +I      D
Sbjct: 10  WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSYRITSASVND 59

Query: 257 EGVYVCTATNSLGTAETKCKLTP----LNSSNI-------LDLK--------------YK 291
            G Y C    S  +   + ++      L  S+        L L+              Y+
Sbjct: 60  SGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR 119

Query: 292 NGVA--------SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAA 335
           NG A        +L I +      G Y C+             +TV+    A
Sbjct: 120 NGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPA 171

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 40/273 (14%), Positives = 68/273 (24%), Gaps = 50/273 (18%)

Query: 8   KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
           +V       + +W+           S           I      DSGEY+C       +D
Sbjct: 24  EVLHLPGSSSTQWFLNGTATQTSTPSYR---------ITSASVNDSGEYRCQRGLSGRSD 74

Query: 68  ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTR-----QEIKSSYS 122
                +           +         G+   +  H      +         +  K  + 
Sbjct: 75  PIQLEIHRGWLLLQVSSRVFT-----EGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW 129

Query: 123 SHTDDTGRTTTQMSTLSSNYS-SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIM 181
           +      +T    +     Y  S        S  I+                 T KEL  
Sbjct: 130 NSNLTILKTNISHN---GTYHCSGMGKHRYTSAGIS----------------VTVKELFP 170

Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK 241
            P    +            + +G  + LS   K   +           + S     L+ +
Sbjct: 171 APVLNASVTS--------PLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKT---LRGR 219

Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
           N  +  QI     ED G+Y C A    G    +
Sbjct: 220 NTSSEYQILTARREDSGLYWCEAATEDGNVLKR 252

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 7/73 (9%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
            ++      K    V +Y+  +      ++ + +    +          +G Y C    K
Sbjct: 101 ALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTN-------ISHNGTYHCSGMGK 153

Query: 64  HGTDETNCVVIVE 76
           H        V V+
Sbjct: 154 HRYTSAGISVTVK 166

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 7   VKVGSTKPPPTVKW--YKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64
            K+   +P   + +  Y G++ L  R+ S  Y        I+  + EDSG Y C A  + 
Sbjct: 194 TKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQ-------ILTARREDSGLYWCEAATED 246

Query: 65  GT 66
           G 
Sbjct: 247 GN 248

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 67.7 bits (165), Expect = 2e-14
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 6   KVKVGSTKPPPTVKWYKGN----------RELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
           +V   S   PP VKW+KG                  Y  +    +  + I D +P  +G 
Sbjct: 27  RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGS 86

Query: 56  YKCVATNKHGTDETNCVVIV 75
           Y+C  + K   D +N  + V
Sbjct: 87  YRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 66.9 bits (163), Expect = 3e-14
 Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTKN---------GQPLNSSNIL 236
              F  +  D  +  G  +  SA V G      P V W K          GQ L   +  
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           D   K  +  L I +  P   G Y C  +       +   LT
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 68.4 bits (167), Expect = 2e-14
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSN-----ILDLKYKN 242
           PP   +    +    G+   +   ++  P P R++W+     L S       +  +  + 
Sbjct: 14  PPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72

Query: 243 GVAS-LQIQEVFPEDEG-VYVCTATNSLGTAETKCKLT 278
           GV S L I  +   D   +Y CTA NS G+     +L 
Sbjct: 73  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 53.4 bits (128), Expect = 4e-09
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRELSKRDYS------MSYSDGVVS-MEIIDCKPED-SGE 55
            IK  + ST PP  + W      L            +S  +GV+S + I +    D    
Sbjct: 32  QIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI 91

Query: 56  YKCVATNKHGTDETNCVVIVESEEES 81
           Y C A N  G+D     +  +  E S
Sbjct: 92  YNCTAWNSFGSDTEIIRLKEQGSEMS 117

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 69.7 bits (170), Expect = 4e-14
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 3/91 (3%)

Query: 189 PPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
            P       D + + G    L     +G    +  W K             +  +    +
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VI 178

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            ++    E  G Y CT  N +G+ +   +L 
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 52.8 bits (126), Expect = 3e-08
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 13  KPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
             P   +W K  + +     +    +  V+S  + +   E SG Y C   N+ G+D+   
Sbjct: 149 SLPLQFEWQKLSDSQTMPTPWLAEMTSPVIS--VKNASSEYSGTYSCTVQNRVGSDQCML 206

Query: 72  VVIV 75
            + V
Sbjct: 207 RLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 48.5 bits (115), Expect = 6e-07
 Identities = 17/120 (14%), Positives = 31/120 (25%), Gaps = 26/120 (21%)

Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
           +      + W  +       + + + Y          +++                    
Sbjct: 29  EDQGPLDIEWLISPSDNQIVDQVIILYSGD-------KIYDNYYPDLKGRVH-------- 73

Query: 274 KCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
                            K+G AS+ +  +   D G Y C    + G A  K  LTV   P
Sbjct: 74  -----------FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKP 122

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 38/112 (33%)

Query: 2   QNVIKVKVGST-------------KPPPTVKWYKGNRELSKRDYSMSYSD---------- 38
           +  I+   G T             + P  ++W     +    D  +              
Sbjct: 7   EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66

Query: 39  ---------------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75
                          G  S+ + + +  D G Y+C      G      ++ V
Sbjct: 67  DLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV 118

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 67.9 bits (165), Expect = 4e-13
 Identities = 28/194 (14%), Positives = 52/194 (26%), Gaps = 57/194 (29%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGD-PEPR---VSWTKNGQPLNSSNILDLKYKNGV 244
               + +   +    G    L+A V GD P P     +WTK+ QP  ++           
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------- 51

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL--------------------------- 277
           A+L + +   E+ G Y  T  ++      + ++                           
Sbjct: 52  ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111

Query: 278 -----------TPLNSSNILDLKYKNGV-----ASLQIQEVFPEDEGVYVCTATNSLGTA 321
                      TP ++  +     K          + IQE   +  GVY          +
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDS 171

Query: 322 ETKCKLTVRSTPAA 335
                  +      
Sbjct: 172 AASASTKIMLATMN 185

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 49.4 bits (117), Expect = 6e-07
 Identities = 39/291 (13%), Positives = 81/291 (27%), Gaps = 46/291 (15%)

Query: 4   VIKVKVGSTKPPP---TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 60
            +   V   +P P   T  W K ++            +   ++ + D   E++G YK   
Sbjct: 21  TLTATVAGDEPLPSNLTYTWTKDDQPHE---------NNTATLTVADATSENAGSYKVTV 71

Query: 61  TNKHGTDETNCVVI-VESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKS 119
            +          V  +E  E      E  H ++ S     +   ++ +    T     + 
Sbjct: 72  QDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGG-KTPADNYEL 130

Query: 120 SYSSHTDDTGRTTTQMSTLSS-------NYSSSTNNATSPSKKITRRMNSILDTDSPSRS 172
            YS    +    TTQ  T+          Y+                       DS + +
Sbjct: 131 HYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGE---------------SEDSAASA 175

Query: 173 RSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWT----KNGQ 228
            +      M  D  +   +      + +++     D+     G P   + +     + GQ
Sbjct: 176 STKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQ 235

Query: 229 PLNSSNILDLKYKNGVAS------LQIQEVFPEDEGVYVCTATNSLGTAET 273
              +    ++       S      L  +    +D   + C A       + 
Sbjct: 236 LSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDE 286

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 49.1 bits (116), Expect = 8e-07
 Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 19/100 (19%)

Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVK---GDPEP-----RVSWTKNGQPLNSSNILDL 238
                   +     +     ++L A VK   G           SW+K    ++++     
Sbjct: 90  AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT----- 144

Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                   + IQE   +  GVY          +       
Sbjct: 145 ------QDITIQEFTADKNGVYTVKVWGESEDSAASASTK 178

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 65.9 bits (160), Expect = 2e-12
 Identities = 32/290 (11%), Positives = 67/290 (23%), Gaps = 46/290 (15%)

Query: 7   VKVGST-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
           V+ G T       P  V+W          +   +             +   +G Y C  +
Sbjct: 24  VEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKN------EWIQEKAEATRTGTYTCSNS 77

Query: 62  NKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYI--EKHIRPAPAIITTR---QE 116
           N   +     V + +  +       L   F        +                   + 
Sbjct: 78  NGLTSSIY--VFVRDPAKLFLVGLPL---FGKEDSDALVRCPLTDPQVSQYSLIECDGKS 132

Query: 117 IKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTT 176
           + +  +   +     T +    + +       A      +     ++   ++        
Sbjct: 133 LPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIK------ 186

Query: 177 KELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNS--- 232
                        P  +   T   +  G    +   +          W K          
Sbjct: 187 -----------AIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQ 235

Query: 233 ----SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
               S            +L I     +D GV++C A N+ G+A     L 
Sbjct: 236 VKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 49.3 bits (117), Expect = 7e-07
 Identities = 26/197 (13%), Positives = 52/197 (26%), Gaps = 57/197 (28%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPLNS--------------- 232
           P +           +     +   +      + S  + +G+ L +               
Sbjct: 91  PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIK 150

Query: 233 -----------------------SNILDLKYKNGVASLQIQEVFPEDEGVYV-------C 262
                                  S+   LK +  + ++ +  V      +         C
Sbjct: 151 NVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVC 210

Query: 263 TATNS----------LGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 312
           T  +           +            NS +  D  Y+    +L I     +D GV++C
Sbjct: 211 TIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYE-RQETLTISSARVDDSGVFMC 269

Query: 313 TATNSLGTAETKCKLTV 329
            A N+ G+A     L V
Sbjct: 270 YANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 49.0 bits (116), Expect = 8e-07
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 8/76 (10%)

Query: 8   KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVV--------SMEIIDCKPEDSGEYKCV 59
            +          W K N +          S            ++ I   + +DSG + C 
Sbjct: 211 TIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCY 270

Query: 60  ATNKHGTDETNCVVIV 75
           A N  G+      + V
Sbjct: 271 ANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 27/188 (14%), Positives = 46/188 (24%), Gaps = 53/188 (28%)

Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
            +PP      ++  ++ G  L L+ +        V WT                 N    
Sbjct: 10  PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVE-------NKKNE 58

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAET--------------------------KCKLTPL 280
              ++      G Y C+ +N L ++                            +C LT  
Sbjct: 59  WIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDP 118

Query: 281 NSSNILDLKYKNGVA-------------SLQIQEV-FPEDEGVYVCTATNSLGTAETKC- 325
             S    L   +G +              + I+ V          C A        +   
Sbjct: 119 QVSQYS-LIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKF 177

Query: 326 KLTVRSTP 333
            L VR   
Sbjct: 178 TLKVREAI 185

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 66.9 bits (162), Expect = 3e-12
 Identities = 37/287 (12%), Positives = 66/287 (22%), Gaps = 27/287 (9%)

Query: 10  GSTKPPPTVKWYKGNRELSKRDYSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHG 65
            S+     V      +     +  +  +     G  S+ I   + ED+G Y C A +   
Sbjct: 255 QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQ 314

Query: 66  TD--ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHI--RPAPAIITTRQEIKSSY 121
                      +   EES   +        +G    +      + + +I        +  
Sbjct: 315 LQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQN 374

Query: 122 SSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS--------PSRSR 173
                         +      S             T  +N +   D+             
Sbjct: 375 GRCPLLVDSEGWVKAQYEGRLSLLEEPGNG---TFTVILNQLTSRDAGFYWCLTNGDTLW 431

Query: 174 STTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL--- 230
            TT E+ +                        C           +    W   G      
Sbjct: 432 RTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCH-FPCKFSSYEKYWCKWNNTGCQALPS 490

Query: 231 ----NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
                S   ++    + + SL +  V   DEG Y C         ET
Sbjct: 491 QDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGET 537

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 62.7 bits (151), Expect = 5e-11
 Identities = 46/442 (10%), Positives = 91/442 (20%), Gaps = 117/442 (26%)

Query: 11  STKPPPTVK-WYKGNRELSKRDYSMSYS-----------------DGVVSMEIIDCKPED 52
            T+     K  YK            S                     + S+ I   +  D
Sbjct: 137 KTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSD 196

Query: 53  SGEYKCVATNKHGTDETN----CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAP 108
           +G+Y C A +   +++ N     +           +  +  +     +   + K +    
Sbjct: 197 AGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQS 256

Query: 109 AIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS 168
           +       + +         GR                      S  +   +  +   D+
Sbjct: 257 SGENCDVVVNTLGKRAPAFEGRI------------LLNPQDKDGSFSVV--ITGLRKEDA 302

Query: 169 --------PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR 220
                             +                 T      G  + +           
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKS 362

Query: 221 VSWTKNGQPLNSSNILDLKY-------------------KNGVASLQIQEVFPEDEGVYV 261
           + +    +   +     L                      NG  ++ + ++   D G Y 
Sbjct: 363 IKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYW 422

Query: 262 CTATNSLG----------------------------TAETKCKLTP-------------- 279
           C                                   T +  C                  
Sbjct: 423 CLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNN 482

Query: 280 -----------LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKL 327
                        S   ++    + + SL +  V   DEG Y C         ET    +
Sbjct: 483 TGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYV 542

Query: 328 TVRSTPAANLGKSPSKESDKAP 349
            V    AA        ++D AP
Sbjct: 543 AVEERKAAGSRDVSLAKADAAP 564

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 53.8 bits (128), Expect = 4e-08
 Identities = 34/290 (11%), Positives = 73/290 (25%), Gaps = 25/290 (8%)

Query: 10  GSTKPPPTVKWYKGNRELSKRDYSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHG 65
              +              SK     + ++    G   + I     +DSG YKC       
Sbjct: 40  QGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSR 99

Query: 66  TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHT 125
               +  + V          ++    L              A    +  ++I        
Sbjct: 100 GLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVI 159

Query: 126 DDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS----------PSRSRST 175
           D +G         +                +   +N +  +D+           + ++  
Sbjct: 160 DSSGYVN---PNYTGRIRLDIQGTGQLLFSVV--INQLRLSDAGQYLCQAGDDSNSNKKN 214

Query: 176 TKELIMPPDTAMTPPQFANKLT---DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS 232
               ++ P+  +        +T       +                  V     G+   +
Sbjct: 215 ADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPA 274

Query: 233 SN---ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP 279
                +L+ + K+G  S+ I  +  ED G Y+C A +     E       
Sbjct: 275 FEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAW 324

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 19/162 (11%), Positives = 45/162 (27%), Gaps = 18/162 (11%)

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS--WTKNGQP 229
             ++              P   N     T+D G+ + ++   K +   +    + + G  
Sbjct: 95  GINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLY 154

Query: 230 L---------------NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
                               +        + S+ I ++   D G Y+C A +   + +  
Sbjct: 155 PVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKN 214

Query: 275 CKLTPLNSSNILDLKYKNGVASLQIQ-EVFPEDEGVYVCTAT 315
             L  L     L  +   G  +          +   ++C  +
Sbjct: 215 ADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQS 256

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 63.5 bits (154), Expect = 5e-12
 Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 4/88 (4%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK---NGVA 245
           P   +         D   L ++  V   P P V W        +    +       +G  
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL 163

Query: 246 SLQI-QEVFPEDEGVYVCTATNSLGTAE 272
           S+ +   +         C   N    A 
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKNDKEEAH 191

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 60.0 bits (145), Expect = 6e-11
 Identities = 23/174 (13%), Positives = 35/174 (20%), Gaps = 64/174 (36%)

Query: 213 VKGDPEPRVSWTKNGQPLNS-----------------SNILDLKYKNGVASLQIQEVFPE 255
           V   PE  VSW K G                          D+        L +      
Sbjct: 18  VSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS 77

Query: 256 DEGVYVCTATNSLGTAETKCKLT----------------PLNSSNILD------------ 287
            +G Y+C           +  L+                P  S   +             
Sbjct: 78  HDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQ 137

Query: 288 ------------------LKYKNGVASLQI-QEVFPEDEGVYVCTATNSLGTAE 322
                             +K K+G  S+ +   +         C   N    A 
Sbjct: 138 WLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 5/70 (7%)

Query: 14  PPPTVKWYKGNRELSKRDYS----MSYSDGVVSMEII-DCKPEDSGEYKCVATNKHGTDE 68
           P P V+W            +    M   DG +S+ +             CV  N      
Sbjct: 132 PHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191

Query: 69  TNCVVIVESE 78
              V    S+
Sbjct: 192 GVYVSGYLSQ 201

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 10/85 (11%), Positives = 17/85 (20%), Gaps = 18/85 (21%)

Query: 11  STKPPPTVKWYKGNRELSK------------------RDYSMSYSDGVVSMEIIDCKPED 52
           S  P   V W+K      +                    + +  S     + +       
Sbjct: 19  SLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 78

Query: 53  SGEYKCVATNKHGTDETNCVVIVES 77
            G Y C              + V  
Sbjct: 79  DGNYLCRMKLGETEVTKQEHLSVVK 103

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 192 FANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYKNGVASLQIQ 250
              K +      G  L +    K     +V  + + + + +  +   +  +NG   L  +
Sbjct: 249 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG--DLFFK 306

Query: 251 EVFPEDEGVYVCTATNSLGTAETKCKLT 278
           +V  ED GVY C A           +L 
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELK 334

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 11/65 (16%), Positives = 22/65 (33%)

Query: 11  STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
             +    V     N ++  +  + S S     +     + ED G Y C A  +   +  +
Sbjct: 271 KQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLS 330

Query: 71  CVVIV 75
             + V
Sbjct: 331 VELKV 335

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 62.2 bits (150), Expect = 2e-11
 Identities = 15/141 (10%), Positives = 29/141 (20%), Gaps = 29/141 (20%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
                +      +D+G  + ++          V+W        +      +         
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEG 308
           I     E  G    +                             G  +L I+     D G
Sbjct: 196 ITWFSSEIAGRASFS-----------------------------GARNLVIRAAKITDAG 226

Query: 309 VYVCTATNSLGTAETKCKLTV 329
              C      G  +     T+
Sbjct: 227 RVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 26/124 (20%)

Query: 215 GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
               P +SW K   P  S+ +    Y            +  +   +V + +      +  
Sbjct: 31  DTQPPVISWLKGASPDRSTKVFKGNYN-----------WQGEGLGFVESDSYKESFGDFL 79

Query: 275 CKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS-----LGTAETKCKLTV 329
            + +  N              +L++  V P+D G Y C           G       L V
Sbjct: 80  GRASVAN----------LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129

Query: 330 RSTP 333
               
Sbjct: 130 TGHT 133

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 43.0 bits (100), Expect = 6e-05
 Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 31/103 (30%)

Query: 4   VIKVKVGST---------KPPPTVKWYKGNREL--------------SKRDYSMSYSD-- 38
           V++V  G+               V WY G                  ++   +   S+  
Sbjct: 145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIA 204

Query: 39  ------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75
                 G  ++ I   K  D+G   C      G  + +    +
Sbjct: 205 GRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 60.1 bits (145), Expect = 8e-11
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
               Q   ++T+ T+ +   + L+ +   D    + W  N Q L  +  + L   N    
Sbjct: 108 QPVTQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNS--I 164

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETK 274
           L+I  +  ED G Y C  +N +    + 
Sbjct: 165 LRIDPIKREDAGEYQCEISNPVSVRRSN 192

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 30/186 (16%), Positives = 42/186 (22%), Gaps = 63/186 (33%)

Query: 209 LSAVVKGDPEPRVSWTKNGQPLNSSNILDLK------------------YKNGVASLQIQ 250
           L            +W K         I                      Y NG  SL  Q
Sbjct: 19  LLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG--SLLFQ 76

Query: 251 EVFPEDEGVYVCTATNSLGTAETK---------CKLTPLNSSN---------ILDLK--- 289
            +  +D GVY    T+                      L  +N          L      
Sbjct: 77  MITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND 136

Query: 290 -------YKNGVA--------------SLQIQEVFPEDEGVYVCTATNSLGTAETK-CKL 327
                    N  +               L+I  +  ED G Y C  +N +    +   KL
Sbjct: 137 IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 196

Query: 328 TVRSTP 333
            +   P
Sbjct: 197 DIIFDP 202

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 11  STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
           S      ++W   ++ L   +  M+ S     + I   K ED+GEY+C  +N      +N
Sbjct: 134 SNDIGANIQWLFNSQSLQLTE-RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSN 192

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 59.4 bits (144), Expect = 8e-11
 Identities = 21/168 (12%), Positives = 41/168 (24%), Gaps = 45/168 (26%)

Query: 198 DKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPED 256
              +     + L+      PE   + W  NG  + +                  +    D
Sbjct: 13  WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNND 62

Query: 257 EGVYVCTATNSLGTAE-----------TKCKLTPLNSSNILDLK--------------YK 291
            G Y C    +  +              +           + L+              ++
Sbjct: 63  SGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQ 122

Query: 292 NGVA--------SLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVR 330
           NG +        +  I +      G Y CT         +K   +TV+
Sbjct: 123 NGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 11  STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
             KP   V +++  +         ++S    +          SG+Y C     +    + 
Sbjct: 111 KDKPLVKVTFFQNGKSQKFSHLDPTFSIPQAN-------HSHSGDYHCTGNIGYTLFSSK 163

Query: 71  CVVI 74
            V I
Sbjct: 164 PVTI 167

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 9/63 (14%)

Query: 8  KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
          +   +    +++W+     +                        DSGEY C       +D
Sbjct: 27 QGARSPESDSIQWFHNGNLIPTHTQPSY---------RFKANNNDSGEYTCQTGQTSLSD 77

Query: 68 ETN 70
            +
Sbjct: 78 PVH 80

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 33/172 (19%), Positives = 46/172 (26%), Gaps = 47/172 (27%)

Query: 198 DKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPED 256
              I  G+ + L+       E     W  NG     +N          +SL I     ED
Sbjct: 13  WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFED 62

Query: 257 EGVYVCTATNSLGTAETK--------------------------CKLTPLNSSNILDLKY 290
            G Y C       +                              C     N      + Y
Sbjct: 63  SGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH-GWRNWDVYKVIYY 121

Query: 291 KNGVA--------SLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVRSTP 333
           K+G A        ++ I     ED G Y CT        E++   +TV   P
Sbjct: 122 KDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 7/64 (10%)

Query: 11  STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
                  V +YK    L        Y +   ++ I +   EDSG Y C         E+ 
Sbjct: 111 RNWDVYKVIYYKDGEALK-----YWYENH--NISITNATVEDSGTYYCTGKVWQLDYESE 163

Query: 71  CVVI 74
            + I
Sbjct: 164 PLNI 167

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 8  KVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
             +     + KW+       + + S++         I++ K EDSGEYKC     + ++
Sbjct: 27 NGNNFFEVSSTKWFHNGSLSEETNSSLN---------IVNAKFEDSGEYKCQHQQVNESE 77

Query: 68 ETNCVVIVES 77
               V  + 
Sbjct: 78 PVYLEVFSDW 87

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 57.4 bits (138), Expect = 1e-10
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 16/106 (15%)

Query: 183 PDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS--WTKNGQPLNSSNILDLKY 240
            D  ++P           +  G+ L L+   + +    +   W           +++   
Sbjct: 8   YDVVLSPSH------GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 61

Query: 241 K--------NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           K          +++L I  V   D+G+Y C A++ L T +    + 
Sbjct: 62  KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 20/94 (21%)

Query: 3   NVIKVKVGST---------KPPPTVKWY-------KGNRELSKRDYSMSYSDGVV----S 42
           + I++ VG           +    + +          +++L  RD        +     +
Sbjct: 16  HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75

Query: 43  MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76
           + I      D G Y C A++   T + +  V V 
Sbjct: 76  LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 19/161 (11%), Positives = 45/161 (27%), Gaps = 38/161 (23%)

Query: 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV---------ASLQIQEVFPEDE 257
           LD+ +    D    + W K       +     K               +L+I+ +  +D+
Sbjct: 19  LDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQ 78

Query: 258 GVYVCTATNSLGTAETKCKLT---------PLNSSNILDLK---------------YKNG 293
            +Y  +  ++ G    +             P  S   ++                 Y++G
Sbjct: 79  DIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDG 138

Query: 294 VA-----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
                   +   +        + CTA N +    +   ++ 
Sbjct: 139 KHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 14  PPPTVKWYKGNRELS----KRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVATNK 63
               +KW K + +      +++                +++I   K +D   YK    + 
Sbjct: 29  DIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDT 88

Query: 64  HGTDETNCVVIVE 76
            G +    +  ++
Sbjct: 89  KGKNVLEKIFDLK 101

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 10/60 (16%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
             P +  Y+  + L               +         S ++KC A NK   + +   V
Sbjct: 128 TDPELNLYQDGKHLKLSQ----------RVITHKWTTSLSAKFKCTAGNKVSKESSVEPV 177

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 5/36 (13%), Positives = 18/36 (50%)

Query: 295 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
            +L+I+ +  +D+ +Y  +  ++ G    +    ++
Sbjct: 66  GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK 101

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 55.6 bits (133), Expect = 5e-10
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 10/83 (12%)

Query: 4   VIKVKVGSTKPPPTVKWYKGN-RELSKRD---------YSMSYSDGVVSMEIIDCKPEDS 53
           V KV        PT+KW+KG   EL  +          ++ + +   V + I      D 
Sbjct: 33  VAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDR 92

Query: 54  GEYKCVATNKHGTDETNCVVIVE 76
           G Y+     K   D     + VE
Sbjct: 93  GYYRLEVKAKDTCDSCGFNIDVE 115

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 12/109 (11%)

Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTK---------NGQP 229
                     F  K    +++ G+   + A V G     +P + W K         +G  
Sbjct: 5   SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64

Query: 230 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            +     +         L I +V   D G Y                + 
Sbjct: 65  FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NGQPL-NSSNILDLK 239
                    Q         +D+G  +       GDP P + W       +   SN     
Sbjct: 384 RARIRDRKAQ------QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTV 437

Query: 240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           + +G  +L+++    +D G Y+C A N+ G       L 
Sbjct: 438 FPDG--TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 14  PPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
           PPP + W    + L           + DG  ++E+   + +D+G Y C+A N  G D   
Sbjct: 413 PPPAILWLSPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLCIAANAGGNDSMP 470

Query: 71  CVVIVES 77
             + V S
Sbjct: 471 AHLHVRS 477

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK---NGV 244
             P       D  + +G   +L           VSW      + +     ++     +G 
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG- 397

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            +L    V  +D G+Y C  +NS+G       L 
Sbjct: 398 -TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 14  PPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
              +V W   N  +    + +      SDG  ++   +   +D+G Y C+ +N  G    
Sbjct: 368 SLTSVSWITPNGTVMTHGAYKVRIAVLSDG--TLNFTNVTVQDTGMYTCMVSNSVGNTTA 425

Query: 70  NCVVIV 75
           +  + V
Sbjct: 426 SATLNV 431

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 56.1 bits (134), Expect = 2e-09
 Identities = 19/134 (14%), Positives = 34/134 (25%), Gaps = 4/134 (2%)

Query: 142 YSSSTNNATSPSKKITRRMNSILD--TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDK 199
           Y    +   S   ++  RM S  D   D+  +  +   +                +   K
Sbjct: 64  YQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK 123

Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGV 259
               G  + L+      P   + W  N + +           +       +    E  G 
Sbjct: 124 VSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 181

Query: 260 YVCTATNSLGTAET 273
           YVC    S      
Sbjct: 182 YVCYPRGSKPEDAN 195

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 53.4 bits (127), Expect = 1e-08
 Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 13  KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP-EDSGEYKCVATNKHGTDET 69
            P   + W   ++ +   +   +       + + +    E SG Y C        D  
Sbjct: 138 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 195

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 48.7 bits (115), Expect = 5e-07
 Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 7/57 (12%)

Query: 215 GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
                 ++W K+G+ +                  +     +  G+Y C  + +    
Sbjct: 26  DAEAKNITWFKDGKMIGFLT-------EDKKKWNLGSNAKDPRGMYQCKGSQNKSKP 75

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 6/70 (8%), Positives = 21/70 (30%), Gaps = 6/70 (8%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
              + W+K  + +         ++      +     +  G Y+C  +            
Sbjct: 28 EAKNITWFKDGKMIG------FLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYR 81

Query: 74 IVESEEESKE 83
          +  +++  K+
Sbjct: 82 MGSADDAKKD 91

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 53.5 bits (128), Expect = 3e-09
 Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS--WTKNGQPLNSSNILDLKYKNG---- 243
           PQ   +   ++   G  +  +       +  ++  W  + + L  + + +  +       
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 244 ----VASLQIQEVFPEDEGVYVCTATNSLGTA 271
                  L+++ V    EG Y C  +N  G++
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 40.4 bits (94), Expect = 9e-05
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 10  GSTKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSME------IIDCKPEDSGEYKCVA 60
            S+  P T  W   N  L      +Y+   + G   ME      + + +    G Y+CV 
Sbjct: 36  SSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVI 95

Query: 61  TNKHGTDETNCVVI 74
           +N  G+  +    +
Sbjct: 96  SNHFGSSYSVXAXL 109

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK---NGV 244
           + P   +   D  I +G+  +L    +  P   V W      + S      +     +G 
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKC--RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDG- 407

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            +L    V   D GVY C  TN  G +     L 
Sbjct: 408 -TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 14  PPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
           P  +VKW   N  +    S+       +DG  ++        D+G Y C+ TN  G    
Sbjct: 378 PMSSVKWLLPNGTVLSHASRHPRISVLNDG--TLNFSHVLLSDTGVYTCMVTNVAGNSNA 435

Query: 70  NCVVIV 75
           +  + V
Sbjct: 436 SAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 290 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
             +G  +L    V   D GVY C  TN  G +     L V +  
Sbjct: 404 LNDG--TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 8/108 (7%)

Query: 172 SRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN 231
                  + +         +         +       L+   +G P   VSW     P N
Sbjct: 92  WDYKYLTVKVKASYMRIDTRILEVPGTGEVQ------LTCQARGYPLAEVSWQNVSVPAN 145

Query: 232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP 279
           +S+I   +    V S+    + P+    + C   N+     T   + P
Sbjct: 146 TSHIRTPEGLYQVTSVLR--LKPQPSRNFSCMFWNAHMKELTSAIIDP 191

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 25/167 (14%)

Query: 2   QNVIKVKVGST---------KPPPTVKWYKGNRELSKRDYSM----------SYSDGVVS 42
           + V  V VGS+         +    ++  + + +  + D S+              G   
Sbjct: 9   KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL 68

Query: 43  MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEK 102
             I   +  DSG+Y+C+       D     V V++     + +      +       +  
Sbjct: 69  FHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRI---LEVPGTGEVQLTC 125

Query: 103 HIR--PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTN 147
             R  P   +      + ++ +SH           S L      S N
Sbjct: 126 QARGYPLAEVSWQNVSVPAN-TSHIRTPEGLYQVTSVLRLKPQPSRN 171

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 52.1 bits (124), Expect = 4e-08
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 200 TIDDGQCLDLSAVVKGDPEPRVSWTKN-GQPLNSSNILDLKYKNGVASLQIQEVFPEDEG 258
               G  + L+    G   P  SW      PLN      +  +   ++L +  V   +E 
Sbjct: 12  LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK----VTNEGTTSTLTMNPVSFGNEH 67

Query: 259 VYVCTATNSLGTAETKCKLT 278
            Y+CTAT      E   ++ 
Sbjct: 68  SYLCTATCESRKLEKGIQVE 87

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 26/195 (13%)

Query: 2   QNVIKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPED 52
           ++    ++G +            P   W             ++      ++ +      +
Sbjct: 8   ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG--KVTNEGTTSTLTMNPVSFGN 65

Query: 53  SGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIE---KHIRPAPA 109
              Y C AT +    E    V + S  +  E        L +G    ++     + P   
Sbjct: 66  EHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP--LEAGKPITVKCSVADVYPFDR 123

Query: 110 IITT----RQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT-RRMNSIL 164
           +          +KS       D     T+   ++                +  R    I 
Sbjct: 124 LEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKV-----LVCRAKLHID 178

Query: 165 DTDSPSRSRSTTKEL 179
           + DS    R   KEL
Sbjct: 179 EMDSVPTVRQAVKEL 193

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 42.8 bits (100), Expect = 5e-05
 Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 9/113 (7%)

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD---PEPRVSWTKNGQPLNSSNILDL--- 238
              + P+         ++ G+ + +   V          +   K    + S   L+    
Sbjct: 87  EIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADR 146

Query: 239 -KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKY 290
              +     +    V  +   V VC A   +   ++    T   +   L +  
Sbjct: 147 KSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS--VPTVRQAVKELQVYI 197

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
           +   ++L +  V   +E  Y+CTAT      E   ++ + S P
Sbjct: 50  EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFP 92

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK---------NGQPLNSSNILDLKY 240
               N     T+++GQ L L  V        + W               L +S    L +
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                S+ +  V  +DEGVY C    S   +  + K+ 
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVI 98

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 22/165 (13%), Positives = 41/165 (24%), Gaps = 45/165 (27%)

Query: 200 TIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEG 258
           ++ +   + L       PE     W  N   ++S            +S  I      D G
Sbjct: 18  SVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----------SSYFIDAATVNDSG 67

Query: 259 VYVCTATNSLGTAETKCKL-----------TPLNSSNILDLK--------------YKNG 293
            Y C    S  +   + ++                 + + L+               +NG
Sbjct: 68  EYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNG 127

Query: 294 VA--------SLQIQEVFPEDEGVYVCTATNSLGTAE-TKCKLTV 329
                        I +   +D G Y C               +T+
Sbjct: 128 KDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 17/106 (16%)

Query: 166 TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWT 224
           T+  + S     E+ +       P             +   + L     K     +V++ 
Sbjct: 73  TNLSTLSDPVQLEVHIGWLLLQAPRW--------VFKEEDPIHLRCHSWKNTALHKVTYL 124

Query: 225 KNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
           +NG+     +          +   I +   +D G Y C        
Sbjct: 125 QNGKDRKYFH--------HNSDFHIPKATLKDSGSYFCRGLVGSKN 162

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 7/68 (10%)

Query: 11  STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
                  V + +  ++     ++  +        I     +DSG Y C          + 
Sbjct: 114 KNTALHKVTYLQNGKDRKYFHHNSDFH-------IPKATLKDSGSYFCRGLVGSKNVSSE 166

Query: 71  CVVIVESE 78
            V I  ++
Sbjct: 167 TVNITITQ 174

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 23/172 (13%), Positives = 42/172 (24%), Gaps = 47/172 (27%)

Query: 200 TIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEG 258
            + +   + L       PE     W  N   ++S            +S  I     +D G
Sbjct: 18  RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSG 67

Query: 259 VYVCTATNSLGTAETK--------------------------CKLTPLNSSNILDLKYKN 292
            Y C    S  +   +                          C      + + +    +N
Sbjct: 68  EYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTY-LQN 126

Query: 293 GV--------ASLQIQEVFPEDEGVYVCTATNSLGTAE-TKCKLTVRSTPAA 335
           G         +   I +   +D G Y C              ++T+    A 
Sbjct: 127 GKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 27/136 (19%)

Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQ 228
           + S     E+ +       P             +   + L      +    +V++ +NG+
Sbjct: 77  TLSDPVQLEVHIGWLLLQAPRW--------VFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128

Query: 229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDL 288
                +          +   I +   +D G Y C                   SS  + +
Sbjct: 129 GRKYFH--------HNSDFYIPKATLKDSGSYFCRGLVGSKNV----------SSETVQI 170

Query: 289 KYKNGVASLQIQEVFP 304
               G+A   I   FP
Sbjct: 171 TITQGLAVSTISSFFP 186

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 7/64 (10%)

Query: 11  STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
                  V + +  +      ++  +     +        +DSG Y C          + 
Sbjct: 114 KNTALHKVTYLQNGKGRKYFHHNSDFYIPKAT-------LKDSGSYFCRGLVGSKNVSSE 166

Query: 71  CVVI 74
            V I
Sbjct: 167 TVQI 170

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 49.0 bits (116), Expect = 5e-07
 Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 50/154 (32%)

Query: 182 PPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRV--SWTKNGQPLNSSNILDLK 239
             D  ++P           +  G+ L L+   + +    +  +W           +++  
Sbjct: 104 IYDVVLSPSH------GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 157

Query: 240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQI 299
            K    S                                          + K  +++L I
Sbjct: 158 LKTQSGS------------------------------------------EMKKFLSTLTI 175

Query: 300 QEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
             V   D+G+Y C A++ L T +    + V   P
Sbjct: 176 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 9/76 (11%)

Query: 10  GSTKPPPTVKWYK-----GNRELSKRDYSMSYSDGVV----SMEIIDCKPEDSGEYKCVA 60
                     W        +++L  RD        +     ++ I      D G Y C A
Sbjct: 131 TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 190

Query: 61  TNKHGTDETNCVVIVE 76
           ++   T + +  V V 
Sbjct: 191 SSGLMTKKNSTFVRVH 206

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 186 AMTPPQFANKLTDK-TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN----ILDLKY 240
            +   Q    LT   T+ +G    L+  V  +    + W+   Q     +    + D + 
Sbjct: 2   KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61

Query: 241 K-----NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           +         S+ + +V   DEG Y C+   ++    +K  LT
Sbjct: 62  ELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLT 103

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 15/100 (15%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD----------L 238
             +    L D  + DG+    S  +    +   +W  NG+ L S+              +
Sbjct: 8   TARLVAGLEDVQVYDGEDAVFSLDLSTIIQ--GTWFLNGEELKSNEPEGQVEPGALRYRI 65

Query: 239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           + K     L +  V  +D G  V  +   +   +    LT
Sbjct: 66  EQKGLQHRLILHAVKHQDSGALVGFSCPGV---QDSAALT 102

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 18/159 (11%), Positives = 37/159 (23%), Gaps = 36/159 (22%)

Query: 207 LDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGV-------ASLQIQEVFPEDEGV 259
           L++      D    V W +    +         +             L+I+ +  +D G 
Sbjct: 16  LNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGT 75

Query: 260 YVCTATNSLGTAETKCKLT---------PLNSSNILDLK---------------YKNGVA 295
           Y  T  ++ GT      L          P+      +                 Y+    
Sbjct: 76  YNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEH 135

Query: 296 -----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
                   +   +      + C A N +        +  
Sbjct: 136 LRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 11  STKPPPTVKWYKGNRELS--KRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVATN 62
            T     V+W +G+  ++  KR        G         ++I +   +DSG Y     +
Sbjct: 23  MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82

Query: 63  KHGTDETNCVVIVESEEE 80
            +GT   N  + +   E 
Sbjct: 83  TNGTRILNKALDLRILEM 100

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 290 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
             NG   L+I+ +  +D G Y  T  ++ GT      L +R   
Sbjct: 58  LANG--DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILE 99

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 23/116 (19%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVK---GDPEPRVSWTKNGQPLNSSNILDLKYKN 242
           +   P          +  G+ + +  VV+        RV W  +    ++S  +   Y N
Sbjct: 2   SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61

Query: 243 --------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                                  SL +Q+V   DEG+Y C       +   K  + 
Sbjct: 62  LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVE 117

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 29/137 (21%)

Query: 200 TIDDGQCLDLSAVVKGDPEPR---VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPED 256
            +  G    +   ++   E R   V+W  +         + L Y + + S + Q +    
Sbjct: 129 RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETV-LSYDSNMRSGKFQSLGRFR 187

Query: 257 EGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN 316
             V                          L         S+++Q V   D+G+Y C+   
Sbjct: 188 NRVD-------------------------LTGDISRNDGSIKLQTVKESDQGIYTCSIYV 222

Query: 317 SLGTAETKCKLTVRSTP 333
               +     L V    
Sbjct: 223 GKLESRKTIVLHVVQDE 239

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 21/91 (23%)

Query: 6   KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGV---------------------VSME 44
            V+    K    V W     +    +Y + Y   +                      S+ 
Sbjct: 28  VVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLL 87

Query: 45  IIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75
           + D +  D G Y C    K+ +      V +
Sbjct: 88  LQDVQKADEGIYTCEIRLKNESMVMKKPVEL 118

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 9/107 (8%)

Query: 170 SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP 229
           S    T  +     D  ++        +D+T+  G  + L   VK   +  + W+   Q 
Sbjct: 19  SPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQ 78

Query: 230 L----NSSNILDLKYK-----NGVASLQIQEVFPEDEGVYVCTATNS 267
                    + D + +         S+ I  V   DEG Y C+    
Sbjct: 79  TLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM 125

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 46.7 bits (110), Expect = 7e-06
 Identities = 29/230 (12%), Positives = 55/230 (23%), Gaps = 43/230 (18%)

Query: 147 NNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPP--QFANKLTDKTIDDG 204
           N  T P+        S +  ++  R       L++P           F   ++ K+    
Sbjct: 32  NTLTKPTSDPWMPSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPP 91

Query: 205 QCLDLSAVVKGDPEPRVSWTKNGQPLNS---SNILDLKYKNGVASLQIQEVFPEDEGVYV 261
             L++   V   P     W  +G P  +   + +    +      +  + +    +G   
Sbjct: 92  GLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLA 151

Query: 262 CTATNSLGTAETKC--------------------------------------KLTPLNSS 283
                 LG   T+                                        +      
Sbjct: 152 IDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK 211

Query: 284 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
            I     +  +AS  +      D G Y C      G   +     V   P
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP 261

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 2   QNVIKVKVGSTKPPPTVKWYKGNRELSKRD---YSMSYSDGVVSM-EIIDCKPEDSGEYK 57
           Q          +     + +    ++         ++ S   ++   +++    D+G+Y+
Sbjct: 180 QFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYR 239

Query: 58  CVATNKHGTDETNCVVIVESE 78
           C+   + G   +N   +V  E
Sbjct: 240 CMIRTEGGVGISNYAELVVKE 260

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 16/119 (13%)

Query: 166 TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK 225
           +   +  +  T ++  P +                       +L+   +G P+  V WT 
Sbjct: 100 SYGGADYKRITVKVNAPYNKINQR-------ILVVDPVTSEHELTCQAEGYPKAEVIWTS 152

Query: 226 NGQPLNSSNILDLKYKNG------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           +   + S        K         ++L+I         ++ CT            +L 
Sbjct: 153 SDHQVLSGKTTTTNSKREEKLFNVTSTLRIN---TTTNEIFYCTFRRLDPEENHTAELV 208

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 4/66 (6%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 14  PPPTVKWYKGNRELSKRDYSMSY---SDGVVSMEI-IDCKPEDSGEYKCVATNKHGTDET 69
           P   V W   + ++     + +     + + ++   +      +  + C        +  
Sbjct: 144 PKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENH 203

Query: 70  NCVVIV 75
              +++
Sbjct: 204 TAELVI 209

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 43.1 bits (101), Expect = 6e-05
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESD 346
           K+G ASL++  +  E+ G Y C    +   A+   +L V ++PA+ L        +
Sbjct: 78  KSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKE 133

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 43.9 bits (102), Expect = 7e-05
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 4/64 (6%)

Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT-NSLGTAETKC 275
                SW        S    +  +++    L I+ +  +  G Y C A   S        
Sbjct: 527 RHATYSWRHKENVEQSC---EPGHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHW 583

Query: 276 KLTP 279
           +L P
Sbjct: 584 QLLP 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 63/393 (16%), Positives = 112/393 (28%), Gaps = 109/393 (27%)

Query: 10  GSTKPPPTVKWYKG--NRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKC---VAT- 61
            S+     +   +    R L  + Y         V + +  +     +    C   + T 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-----AFNLSCKILLTTR 273

Query: 62  NKHGTD----ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEI 117
            K  TD     T   + ++    +    E+    L     KY++   +  P      +E+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-----KYLDCRPQDLP------REV 322

Query: 118 KSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTK 177
            ++          +         N+            K+T  + S L+   P+  R    
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNC------DKLTTIIESSLNVLEPAEYRKMFD 376

Query: 178 EL-IMPPDTAMTPPQFANKL-TDKTIDD-----GQCLDLSAVVKGDPEPRVSWTKNGQPL 230
            L + PP   + P    + +  D    D      +    S V K   E  +S       +
Sbjct: 377 RLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-------I 428

Query: 231 NSSNILDLKYKNG---------VASLQIQEVFPEDEGV------YVCTATNSLG----TA 271
            S   L+LK K           V    I + F  D+ +      Y     + +G      
Sbjct: 429 PSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---SHIGHHLKNI 484

Query: 272 ET-----------------KCKL----TPLN-SSNILDL-----KYKNGVASLQIQEVFP 304
           E                  + K+    T  N S +IL+       YK       I +  P
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-----YICDNDP 539

Query: 305 EDEGVYVCTATNSLGTAETKCKLTVRSTPAANL 337
           + E   V    + L   E      + S    +L
Sbjct: 540 KYER-LVNAILDFLPKIEENL---ICS-KYTDL 567

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 3/57 (5%)

Query: 212 VVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL 268
            V+ +    V W        S      ++      L ++ V   D G Y C      
Sbjct: 30  GVEPEDNATVHWVLRKPAAGSH---PSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP 83

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 24/151 (15%), Positives = 40/151 (26%), Gaps = 35/151 (23%)

Query: 214 KGDPEPRVSWTKNGQPL----NSSNILDLKYKNGV------ASLQIQEVFPEDEGVYVCT 263
              P   V W K    +    NS       +KN V       SL I  +   DE  Y   
Sbjct: 19  SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME 78

Query: 264 ATNSLGTAE------------------TKCKLT--PLNSSNILDLKYKNG-----VASLQ 298
           + N   T +                  +   LT   L  +++    Y+       +    
Sbjct: 79  SPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKT 138

Query: 299 IQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
           +   +      + C A N +        +  
Sbjct: 139 MSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169

>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus} Length = 142

 Score = 41.1 bits (96), Expect = 9e-05
 Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 7   VKVGSTKPPPTVKWYKGNRELSKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNK 63
           ++         V +    +E+ +   Y M    + G++ M +   + ED G Y     + 
Sbjct: 59  MQAEKLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDG 118

Query: 64  HGTDETNCVVIVESEEESKEQQEL 87
             T  +  V+I +  ++ +++ E 
Sbjct: 119 KATGHSTLVLIGDVYKKLQKEAEF 142

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 295 ASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTVRSTPAA 335
             L +Q +   D G Y C   T   GT   +  L V  +  A
Sbjct: 71  LGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA 112

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 216 DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC 275
           D    V W      L +     ++   G + L ++       G  VC  +    T +   
Sbjct: 35  DRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV 89

Query: 276 KLT 278
           +L 
Sbjct: 90  QLL 92

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 10/69 (14%)

Query: 212 VVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
           V   D      W   G  L+S   L + +   +            E  Y C A N++   
Sbjct: 133 VEDADDNVSFRWEALGNTLSSQPNLTVSWDPRI----------SSEQDYTCIAENAVSNL 182

Query: 272 ETKCKLTPL 280
                   L
Sbjct: 183 SFSVSAQKL 191

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
           K+G AS+ +  +   D G Y C    + G A  K  L V
Sbjct: 85  KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 15/112 (13%)

Query: 217 PEPRVSWTKNGQPL----NSSNILDLKYKN-------GVASLQIQEVFPEDEGVYVCTAT 265
            + R+ W K  + +    +    +  +YKN          S+ I  + P DEG Y C   
Sbjct: 26  AQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVL 85

Query: 266 NSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS 317
                A  +  L  +     L +K      S+   E+   +    +C+ +  
Sbjct: 86  KYEKDAFKREHLAEVT----LSVKADFPTPSISDFEIPTSNIRRIICSTSGG 133

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 295 ASLQIQEVFPEDEGVYVC-TATNSLGTAETKCKLTVRSTP 333
           ASL++  +  EDEG Y C   T   G+      L V + P
Sbjct: 79  ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
             G  +L+IQ V   DEG Y C   +     E   +L V
Sbjct: 81  GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 8/106 (7%)

Query: 166 TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVK-GDPEPRVSWT 224
             +    +   K+     D A       NK  +    DG   D S ++  G  +  + W 
Sbjct: 80  GSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWL 139

Query: 225 KNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
           K+G  ++              +  +     +  G Y C        
Sbjct: 140 KDGSIISP-------LNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 32/136 (23%)

Query: 214 KGDPEPRVSWTKNGQPLNS----SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG 269
               +  + +  NG+         + +DL   NG  +L+I  V  ED G Y     +   
Sbjct: 36  HTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLHETE 93

Query: 270 TAET-------------------KCKLT--PLNSSNILDLKYKNG-----VASLQIQEVF 303
                                     LT   L  +++    Y+       +    +   +
Sbjct: 94  DQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW 153

Query: 304 PEDEGVYVCTATNSLG 319
                 + C A N + 
Sbjct: 154 TNLRAPFKCKAVNRVS 169

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 25/111 (22%), Positives = 34/111 (30%), Gaps = 20/111 (18%)

Query: 220 RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP 279
            V+W +   P N  N+     K G          P  E +   +A  S G          
Sbjct: 37  LVTWQRPDAPANHQNVAAFHPKMGP---SFPSPKPGSERLSFVSAKQSTGQDTEAELQD- 92

Query: 280 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT-ATNSLGTAETKCKLTV 329
                          A+L +  +  EDEG Y C  AT   G+      L V
Sbjct: 93  ---------------ATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.98
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.98
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.98
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.97
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.97
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.97
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.97
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.97
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.96
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.96
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.96
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.96
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.96
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.96
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.96
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.96
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.96
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.96
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.96
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.96
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.96
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.96
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.96
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.96
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.95
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.95
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.95
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.95
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.95
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.94
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.94
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.94
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.94
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.94
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.94
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.94
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.94
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.93
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.93
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.93
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.93
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.93
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.93
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.93
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.93
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.93
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.93
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.93
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.93
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.93
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.93
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.93
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.93
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.92
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.92
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.92
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.92
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.92
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.92
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.92
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.92
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.92
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.92
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.91
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.91
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.91
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.91
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.91
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.91
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.91
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.9
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.9
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.9
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.9
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.9
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.9
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.9
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.9
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.9
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.89
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.89
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.89
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.89
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.89
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.89
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.89
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.89
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.89
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.89
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.89
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.89
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.89
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.89
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.89
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.88
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.88
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.88
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.88
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.88
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.88
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.88
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.88
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.88
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.88
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.88
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.88
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.88
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.88
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.88
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.88
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.88
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.88
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.88
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.88
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.88
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.88
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.88
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.88
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.87
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.87
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.87
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.87
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.87
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.87
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.87
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.87
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.87
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.87
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.87
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.87
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.87
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.87
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.87
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.86
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.86
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.86
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.86
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.86
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.86
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.86
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.86
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.86
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.86
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.86
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.86
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.86
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.86
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.86
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.86
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.85
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.85
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.85
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.85
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.85
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.85
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.85
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.85
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.84
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.84
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.84
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.84
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.84
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.84
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.84
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.84
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.84
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.84
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.84
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.84
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.84
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.84
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.84
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.83
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.83
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.83
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.83
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.83
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.83
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.83
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.82
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.82
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.82
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.82
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.82
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.82
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.82
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.82
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.82
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.81
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.81
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.81
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.81
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.81
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.81
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.81
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.81
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.81
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.8
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.8
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.8
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.8
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.8
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.8
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.8
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.8
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.8
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.8
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.79
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.79
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.79
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.79
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.78
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.78
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.78
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.78
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.78
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.78
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.78
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.77
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.77
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.77
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.77
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.76
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.76
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.76
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.75
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.75
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.75
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.75
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.75
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.75
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.75
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.75
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.75
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.74
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.74
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.74
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.74
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.73
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.73
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.73
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.72
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.72
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.72
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.72
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.72
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.72
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.71
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.71
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.71
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.71
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.71
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.71
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.71
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.7
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.7
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.7
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.7
1he7_A	126	High affinity nerve growth factor receptor; transf	99.7
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.7
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.7
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.7
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.69
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.69
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.69
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.69
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.69
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.69
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.69
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.69
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.69
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.68
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.68
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.68
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.68
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.68
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.68
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.68
1he7_A	126	High affinity nerve growth factor receptor; transf	99.68
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.68
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.68
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.68
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.68
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.67
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.67
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.67
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.67
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.67
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.67
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.66
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.66
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.66
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.66
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.66
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.66
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.66
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.66
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.66
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.66
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.65
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.65
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.65
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.65
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.65
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.65
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.65
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.65
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.65
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.65
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.65
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.65
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.64
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.64
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.64
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.64
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.64
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.64
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.64
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.64
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.63
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.63
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.63
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.63
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.63
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.63
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.63
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.63
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.63
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.62
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.62
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.62
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.62
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.62
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.62
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.61
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.61
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.61
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.61
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.61
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.61
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.61
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.61
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.61
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.6
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.6
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.6
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.6
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.6
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.6
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.6
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.6
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.59
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.59
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.59
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.59
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.59
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.59
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.59
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.59
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.58
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.58
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.58
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.58
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.58
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.58
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.58
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.58
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.57
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.57
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.57
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.57
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.57
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.57
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.57
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.57
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.56
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.56
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.56
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.55
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.55
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.55
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.55
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.55
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.55
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.54
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.54
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.54
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.54
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.54
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.53
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.53
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.53
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.53
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.53
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.53
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.53
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.53
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.52
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.52
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.52
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.52
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.52
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.51
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.51
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.51
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.51
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.51
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.5
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.5
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.5
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.49
2ens_A	96	Advanced glycosylation END product-specific recept	99.49
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.49
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.49
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.49
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.48
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.48
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.48
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.48
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.48
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.48
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.48
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.48
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.47
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.47
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.47
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.47
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.47
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.47
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.46
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.46
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.46
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.46
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.45
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.45
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.45
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.45
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.43
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.43
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.43
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.43
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.43
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.42
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.42
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.42
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.42
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.42
2ens_A	96	Advanced glycosylation END product-specific recept	99.42
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.41
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.41
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.4
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.4

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=2.2e-43  Score=321.55  Aligned_cols=327  Identities=20%  Similarity=0.303  Sum_probs=237.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|.|.|.|+|||||..+... ++.+...++..+|.|.+++.+|+|.|+|.|.|..|...+...|.|....
T Consensus        20 G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~   99 (570)
T 3b43_A           20 GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK   99 (570)
T ss_dssp             TSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCC
T ss_pred             CCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEEEECCCC
Confidence            789999999999999999999999998754 4556666777899999999999999999999999998888888886543


Q ss_pred             cchhh-hhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccce
Q psy12422         80 ESKEQ-QELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKI  156 (356)
Q Consensus        80 ~~~~~-~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      .++.. .........+|+.+.|.|.+.  |.|.+.|++++..+.......      ..  ... ....+........+.+
T Consensus       100 ~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~------~~--~~~-~~~~L~i~~~~~~d~G  170 (570)
T 3b43_A          100 LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQ------TS--FIH-NVATLQILQTDQSHVG  170 (570)
T ss_dssp             CCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEE------EE--EET-TEEEEEESSCCGGGCE
T ss_pred             CCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEE------EE--EEC-CEEEEEECcCChHHCE
Confidence            32221 122334457899999999987  677899999876654321110      00  000 0000111112222333


Q ss_pred             eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCce
Q psy12422        157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL  236 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~  236 (356)
                      .|.|.+.+..+    .......+.+.  ....||.+...+....+.+|+.+.|.|.+.|.|+|.++|+|+|..+....++
T Consensus       171 ~Y~C~a~n~~g----~~~~~~~l~v~--~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~  244 (570)
T 3b43_A          171 QYNCSASNPLG----TASSSAKLTLS--EHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY  244 (570)
T ss_dssp             EEEEEEEETTE----EEEEEEEEEEE--CCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSE
T ss_pred             EEEEEEEeCCc----EEEEEEEEEEc--CCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcE
Confidence            33333222211    11112222221  1145777877777788999999999999999999999999999999877777


Q ss_pred             eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc---------------------------eeE
Q psy12422        237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL---------------------------DLK  289 (356)
Q Consensus       237 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~---------------------------~~~  289 (356)
                      .+........|.|.+++.+|+|.|+|.|.|..|....++.|....+|.+.                           .+.
T Consensus       245 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~  324 (570)
T 3b43_A          245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVL  324 (570)
T ss_dssp             EEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEE
T ss_pred             EEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEE
Confidence            77666777899999999999999999999999998888887733222111                           334


Q ss_pred             EeC-----------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCCCCCC
Q psy12422        290 YKN-----------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPS  342 (356)
Q Consensus       290 ~~~-----------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~  342 (356)
                      |.+                 ....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|+.+|.+...+.+.
T Consensus       325 W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~  394 (570)
T 3b43_A          325 WYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV  394 (570)
T ss_dssp             EEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCE
T ss_pred             EeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCce
Confidence            432                 34679999999999999999999999999999999999999877666543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=7e-43  Score=318.24  Aligned_cols=311  Identities=21%  Similarity=0.311  Sum_probs=230.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|.|+|.|+|+|+|.++... ++.+...+....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..++
T Consensus       212 G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  291 (570)
T 3b43_A          212 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP  291 (570)
T ss_dssp             BSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCC
T ss_pred             CCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCC
Confidence            789999999999999999999999999754 4455555666799999999999999999999999999999999887654


Q ss_pred             cchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcccee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT  157 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      .... .......+.+|+.+.|.|.+.  |.|.+.|++++..+.......      ..  .. .....+........+.+.
T Consensus       292 ~~~~-~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~------~~--~~-~~~~~L~i~~v~~~D~G~  361 (570)
T 3b43_A          292 RFIK-KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFR------MS--FV-ESVAVLEMYNLSVEDSGD  361 (570)
T ss_dssp             EEEE-CCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEE------EE--EE-TTEEEEEEESCCGGGCEE
T ss_pred             cccc-cCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEE------EE--EE-CCEEEEEECCCCcccCEE
Confidence            3221 112234578999999999987  788899999887664322110      00  00 000001111122233333


Q ss_pred             eeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee
Q psy12422        158 RRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~  237 (356)
                      |.|.+.+..+.    ......+.+     ..+|.+...+....+.+|+++.|.|.+.|.|+|.+.|+|+|..+....++.
T Consensus       362 Y~C~a~N~~g~----~~~~~~l~V-----~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~  432 (570)
T 3b43_A          362 YTCEAHNAAGS----ASSSTSLKV-----KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK  432 (570)
T ss_dssp             EEEEEEBTTBC----CEEEEEECE-----ECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEE
T ss_pred             EEEEEEeCCCE----EEEEEEEEe-----cCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEE
Confidence            33333322221    112233444     567888877878889999999999999999999999999999998888877


Q ss_pred             EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc--------------------------eeEEe
Q psy12422        238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL--------------------------DLKYK  291 (356)
Q Consensus       238 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~--------------------------~~~~~  291 (356)
                      +..++...+|.|.+++.+|+|.|+|.|.|..|.....+.+....+|.+.                          .+.|.
T Consensus       433 ~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~  512 (570)
T 3b43_A          433 IMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWF  512 (570)
T ss_dssp             EEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEE
T ss_pred             EEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEE
Confidence            7777777899999999999999999999999998887777633322211                          23332


Q ss_pred             C------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy12422        292 N------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR  330 (356)
Q Consensus       292 ~------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  330 (356)
                      +                  +...|.|.+++.+|+|.|+|.|.|..|..++.+.|.|.
T Consensus       513 k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          513 KDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL  569 (570)
T ss_dssp             ETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             eCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence            2                  34689999999999999999999999999999999885

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=8.2e-40  Score=286.11  Aligned_cols=305  Identities=13%  Similarity=0.139  Sum_probs=191.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE   80 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~   80 (356)
                      |+++.|.|.+.|.|.|.|+|++++..+...........+..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..++.
T Consensus        63 G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  142 (423)
T 3qs7_E           63 SASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLL  142 (423)
T ss_dssp             SCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC----
T ss_pred             CCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCcc
Confidence            79999999999999999999999988764322222233445799999999999999999999999998889998885432


Q ss_pred             chhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCC---ceEEEEeeccccccccccccCCCccc
Q psy12422         81 SKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTG---RTTTQMSTLSSNYSSSTNNATSPSKK  155 (356)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (356)
                      .   ....+..+..|+.+.|.|.+.  |.|.+.|++++.............   ........+.+.|.|.+.+..+..  
T Consensus       143 ~---~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~--  217 (423)
T 3qs7_E          143 Y---TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRE--  217 (423)
T ss_dssp             ----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEE--
T ss_pred             c---cccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCc--
Confidence            1   112233456688889999887  888999999776432111100000   000112334555666654432211  


Q ss_pred             eeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC-CCCCeEEEEECCEEccCCC
Q psy12422        156 ITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSSN  234 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~  234 (356)
                                       ......+.+     ..+|.+  .+....+.+|+.+.|.|.+.| .|.|.|.|+++|..+....
T Consensus       218 -----------------~~~~~~l~V-----~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~  273 (423)
T 3qs7_E          218 -----------------CTRLFTIDL-----NQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN  273 (423)
T ss_dssp             -----------------EEECEEEES-----SSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGG
T ss_pred             -----------------ceeeEEEEE-----ecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccc
Confidence                             112233333     222222  234678999999999999998 6779999999998876543


Q ss_pred             ceeE-EE-----eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCcc-----------------------
Q psy12422        235 ILDL-KY-----KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI-----------------------  285 (356)
Q Consensus       235 ~~~~-~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~-----------------------  285 (356)
                      .... ..     .....+|.|.+++.+|+|.|+|.|.|.   ....+.|.+...+.+                       
T Consensus       274 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~  350 (423)
T 3qs7_E          274 YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF  350 (423)
T ss_dssp             EEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEE
T ss_pred             eeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEE
Confidence            2211 11     111347999999999999999999998   444444432111100                       


Q ss_pred             -----ceeEEeCCeEEE-----------EE--ecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCC
Q psy12422        286 -----LDLKYKNGVASL-----------QI--QEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANL  337 (356)
Q Consensus       286 -----~~~~~~~~~~~L-----------~i--~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  337 (356)
                           ..+.|.+++..|           .+  ..+..+|+|.|+|.|.|..|..+.++.|.|+++|..+-
T Consensus       351 ~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~  420 (423)
T 3qs7_E          351 KAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHH  420 (423)
T ss_dssp             EEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC---------
T ss_pred             EEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCcccc
Confidence                 056666544333           33  66778999999999999999999999999999998664

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=7e-40  Score=284.38  Aligned_cols=309  Identities=22%  Similarity=0.304  Sum_probs=201.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeC-CCCCCeEEEEEEEeCCceeE-EEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDC-KPEDSGEYKCVATNKHGTDE-TNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.|+|+|||.++... .......++  .|.|.++ +.+|+|.|+|.|.|..|... ..+.+.+..
T Consensus        23 g~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g--~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~  100 (384)
T 3kld_A           23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAY  100 (384)
T ss_dssp             CSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETT--EEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEE
T ss_pred             CCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECC--EEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEec
Confidence            688999999999999999999999999743 333444555  5677665 78999999999999998764 345565544


Q ss_pred             cccchhhhhhcccccccCccceeeeccc---CCceeeecccccccCCcccc---CCCCceE--EEEeecccccccccccc
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHT---DDTGRTT--TQMSTLSSNYSSSTNNA  149 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~  149 (356)
                      .+.. .........+.+|+.+.|.|...   |.+.+.|++++.........   ...+...  .....+.|.|.|.+.+.
T Consensus       101 ~~~~-~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  179 (384)
T 3kld_A          101 LENF-KTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNT  179 (384)
T ss_dssp             ECCC-SCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEET
T ss_pred             cccc-ccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecc
Confidence            3221 11122334578999999999764   56789999887654322111   0111111  11344556666665543


Q ss_pred             CCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCee-cccCCceeecCCCeEEEEEEEcCCCCCeEEEEE-CC
Q psy12422        150 TSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQF-ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK-NG  227 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g  227 (356)
                      .......               .......+.........+|.+ ...+....+.+|+.+.|.|.+.|+|.|.+.|++ ++
T Consensus       180 ~~~~~~~---------------~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~  244 (384)
T 3kld_A          180 VTNHKVL---------------GPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADG  244 (384)
T ss_dssp             TTTEEEE---------------CCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTC
T ss_pred             cccceee---------------CCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCC
Confidence            3211000               000000000000000122333 233456788999999999999999999999999 45


Q ss_pred             EEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc---------------------
Q psy12422        228 QPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL---------------------  286 (356)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~---------------------  286 (356)
                      ..+.....    .......|.|.+++.+|+|.|+|.|.|..|.......+.....|.+.                     
T Consensus       245 ~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~  320 (384)
T 3kld_A          245 KPIARKAR----RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKAN  320 (384)
T ss_dssp             CCCCTTCE----ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEE
T ss_pred             ccccccce----ecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECC
Confidence            45543221    12223489999999999999999999999988777666522111110                     


Q ss_pred             -----eeEEeC-------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        287 -----DLKYKN-------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       287 -----~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                           .+.|.+             ..+.|.|.++..+|+|.|+|.|.|..|...+++.|.|.+
T Consensus       321 g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          321 GRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             EESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             ccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence                 445543             124799999999999999999999999999999999864

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.6e-38  Score=277.90  Aligned_cols=309  Identities=21%  Similarity=0.303  Sum_probs=207.4

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeC-----CCCCCeEEEEEEEeCCcee--EEE
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDC-----KPEDSGEYKCVATNKHGTD--ETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~-----~~~D~G~Y~C~a~n~~g~~--~~~   70 (356)
                      |++++|.|.+.+ .|.+.|+|+|||..+...  .+.....++  .|.|.++     +.+|+|.|+|.+.|..+..  +..
T Consensus        36 G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~--~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~  113 (403)
T 3laf_A           36 GGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG--SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRT  113 (403)
T ss_dssp             TCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTS--CEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCC
T ss_pred             CCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCC--cEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEE
Confidence            789999999965 688899999999999643  233334455  5777777     6789999999999754333  344


Q ss_pred             EEEEEeccccchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCcccc-----CCCCceE--EEEeecccc
Q psy12422         71 CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHT-----DDTGRTT--TQMSTLSSN  141 (356)
Q Consensus        71 ~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~  141 (356)
                      +.+.|..++..  ........+.+|+.+.|.|.+.  |.+.+.|++++.........     .......  .....+.+.
T Consensus       114 ~~l~v~~p~~~--~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  191 (403)
T 3laf_A          114 AKVMVAGPLRF--LSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGV  191 (403)
T ss_dssp             EEEEECCCCEE--CSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEE
T ss_pred             EEEEecCCCcc--ccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEE
Confidence            66666653322  2223345678999999999986  77789999987765321110     0001000  012223344


Q ss_pred             ccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeE
Q psy12422        142 YSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRV  221 (356)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i  221 (356)
                      |.|...+....                 .........+...+. ...++.+...+....+.+|+.+.|.|.+.|+|.|.+
T Consensus       192 Y~C~~~n~~~~-----------------~~~~~~~l~v~~~p~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~  253 (403)
T 3laf_A          192 YRCSARNPAST-----------------RTGNEAEVRILSDPG-LHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF  253 (403)
T ss_dssp             EEEEEECSSCC-----------------CBCCCEEEEEECCCC-CCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEE
T ss_pred             EEEEEEcCCCc-----------------eeccceeEEEecCCC-cccCceEecCCCceEecCCCcEEEEEEcCCCCCCeE
Confidence            44443222111                 011112222222111 011223445566778999999999999999999999


Q ss_pred             EEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc---------------
Q psy12422        222 SWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL---------------  286 (356)
Q Consensus       222 ~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~---------------  286 (356)
                      .|++++..+...........+.  .|.|.+++.+|+|.|+|.|.|..|.....+.+....++.+.               
T Consensus       254 ~W~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~  331 (403)
T 3laf_A          254 TWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIE  331 (403)
T ss_dssp             EEEETTEECCCSSSSEEEETTT--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEE
T ss_pred             EEEECCeeccCCCceEEECCcc--EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEE
Confidence            9999999887654433333333  79999999999999999999999988777776622111110               


Q ss_pred             -----------eeEEeC--------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecC
Q psy12422        287 -----------DLKYKN--------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP  333 (356)
Q Consensus       287 -----------~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  333 (356)
                                 .+.|..              ..+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|+.||
T Consensus       332 l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             ECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             EEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence                       445543              23569999999999999999999999999999999999875

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=2.6e-38  Score=276.67  Aligned_cols=310  Identities=20%  Similarity=0.314  Sum_probs=209.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCeEEEEEe----eCCCCCCeEEEEEEEeCCceeE-EEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEII----DCKPEDSGEYKCVATNKHGTDE-TNCV   72 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~~~L~i~----~~~~~D~G~Y~C~a~n~~g~~~-~~~~   72 (356)
                      |+++.|.|.+.|.|.+.|+|+|||..+...   +......++  +|.|.    +++.+|+|.|+|.|.|..|... ..+.
T Consensus        32 G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~--~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~  109 (404)
T 3p3y_A           32 RDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG--TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIR  109 (404)
T ss_dssp             SSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSC--CCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCc--eEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEE
Confidence            789999999999999999999999988532   222222334  45553    7889999999999999988874 5678


Q ss_pred             EEEeccccchhhhhhcccccccCccceeeecc-c--CCceeeecccccccCCcccc---CCCCceEE--EEeec-ccccc
Q psy12422         73 VIVESEEESKEQQELAHNFLYSGDRKYIEKHI-R--PAPAIITTRQEIKSSYSSHT---DDTGRTTT--QMSTL-SSNYS  143 (356)
Q Consensus        73 l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~-~--p~p~i~w~~~~~~~~~~~~~---~~~~~~~~--~~~~~-~~~~~  143 (356)
                      |.|...+..+. .......+.+|+.+.|.|.+ .  |.+.+.|++++.........   ...+....  ....+ .+.|.
T Consensus       110 l~V~~~p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~  188 (404)
T 3p3y_A          110 LQVSKSPLWPK-ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYS  188 (404)
T ss_dssp             EEECCCCCCCC-CCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBE
T ss_pred             EEEeccCcccc-CCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceE
Confidence            88876654332 22234567899999999987 3  77889999986443221111   01111111  12223 25566


Q ss_pred             ccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC---CceeecCCCeEEEEEEEcCCCCCe
Q psy12422        144 SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL---TDKTIDDGQCLDLSAVVKGDPEPR  220 (356)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~v~~g~~~~l~C~~~g~p~p~  220 (356)
                      |...+......               .........+.........+|.+....   ....+.+|+.+.|.|.+.|+|.|.
T Consensus       189 C~a~n~~~~~~---------------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~  253 (404)
T 3p3y_A          189 CNARFHFTHTI---------------QQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPD  253 (404)
T ss_dssp             EEEECTTTCCE---------------EECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCE
T ss_pred             EEEEeccccce---------------eccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCc
Confidence            55533222110               001112222222222223444444332   356789999999999999999999


Q ss_pred             EEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc--------------
Q psy12422        221 VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL--------------  286 (356)
Q Consensus       221 i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~--------------  286 (356)
                      +.|+++|..+..... ...  .....|.|.+++.+|+|.|+|.|.|..|.....+.|.+..+|.+.              
T Consensus       254 v~W~~~~~~~~~~~~-~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~  330 (404)
T 3p3y_A          254 IAWYKKGGDLPSDKA-KFE--NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDG  330 (404)
T ss_dssp             EEEEETTBCCCTTTE-EEE--GGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCE
T ss_pred             EEEEECCEECCCCcc-ccc--ccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcE
Confidence            999999988875543 222  223489999999999999999999999988877777632211110              


Q ss_pred             ------------eeEEeC----------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        287 ------------DLKYKN----------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       287 ------------~~~~~~----------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                                  .+.|..                .+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       331 ~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          331 RLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             EEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence                        345543                124799999999999999999999999999999998864

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=278.61  Aligned_cols=306  Identities=13%  Similarity=0.122  Sum_probs=198.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE   80 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~   80 (356)
                      |++++|.|.+.+.|...+.|++++..+...........+..+|.|.+++.+|+|.|+|.|.|..+.....+.|.|...  
T Consensus        63 g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v~~~--  140 (527)
T 3qs9_E           63 SASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT--  140 (527)
T ss_dssp             SCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC----
T ss_pred             cccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEEEECCc--
Confidence            789999999998888999999999987644322233345568999999999999999999999888877777777622  


Q ss_pred             chhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCC---ceEEEEeeccccccccccccCCCccc
Q psy12422         81 SKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTG---RTTTQMSTLSSNYSSSTNNATSPSKK  155 (356)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (356)
                       +......+.....|+.+.|.|.+.  |.|.+.|++++.............   ........+.+.|.|.+.+..+..  
T Consensus       141 -~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~--  217 (527)
T 3qs9_E          141 -LLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRE--  217 (527)
T ss_dssp             ----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEE--
T ss_pred             -eeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEEEEEEEeCCCcc--
Confidence             111112222345677888999887  889999998765542111000000   001112334556666654332211  


Q ss_pred             eeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEc-CCCCCeEEEEECCEEccCCC
Q psy12422        156 ITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSN  234 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~~~~  234 (356)
                                       ......+.+     ..+|.+  .+....+.+|+.+.|.|.+. |.|.|.|+|+++|..+....
T Consensus       218 -----------------~~~~~~l~V-----~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~  273 (527)
T 3qs9_E          218 -----------------CTRLFTIDL-----NQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN  273 (527)
T ss_dssp             -----------------EEECEEEES-----SSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGG
T ss_pred             -----------------cceEEEEEE-----eccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCc
Confidence                             111233444     223333  34567899999999999996 99999999999998876543


Q ss_pred             ceeE-EEe-----CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCc---------cc-------------
Q psy12422        235 ILDL-KYK-----NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSN---------IL-------------  286 (356)
Q Consensus       235 ~~~~-~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~---------~~-------------  286 (356)
                      .... ...     ....+|.|.+++.+|+|.|+|.|.|.   ....+.|.+...+.         +.             
T Consensus       274 ~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~  350 (527)
T 3qs9_E          274 YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF  350 (527)
T ss_dssp             EEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEE
T ss_pred             eeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEE
Confidence            3221 111     12346999999999999999999998   44444444211110         00             


Q ss_pred             ------eeEEeC-------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCC
Q psy12422        287 ------DLKYKN-------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLG  338 (356)
Q Consensus       287 ------~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~  338 (356)
                            .+.|.+             ....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|+++|.+...
T Consensus       351 ~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~  421 (527)
T 3qs9_E          351 KAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAE  421 (527)
T ss_dssp             EEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEEC
T ss_pred             EecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEe
Confidence                  445543             2347999999999999999999999999999999999999977543

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.2e-37  Score=271.74  Aligned_cols=314  Identities=18%  Similarity=0.236  Sum_probs=206.3

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE-EEEEEEecc
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~v~~~   78 (356)
                      |++++|.|.+.+ .|.+.|+|+|+|..+..............+|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|...
T Consensus        21 G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~  100 (395)
T 1bih_A           21 NNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYL  100 (395)
T ss_dssp             TSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEe
Confidence            789999999988 899999999999998754322223333347999999999999999999999887653 355655543


Q ss_pred             ccchhhhhhcccccccCccceeeecc-c--CCceeeecccccccCCcc---------ccCCCCc--eEEEEeeccc---c
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHI-R--PAPAIITTRQEIKSSYSS---------HTDDTGR--TTTQMSTLSS---N  141 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~-~--p~p~i~w~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~---~  141 (356)
                      +.+..  ......+.+|+.+.|.|.+ .  |.+.+.|++++.......         .....+.  .......+.+   .
T Consensus       101 ~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~  178 (395)
T 1bih_A          101 IASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK  178 (395)
T ss_dssp             ECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEE
T ss_pred             ecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceE
Confidence            22211  2234567799999999996 3  888999999862111100         0011111  1112334456   6


Q ss_pred             ccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeE
Q psy12422        142 YSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRV  221 (356)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i  221 (356)
                      |.|.+.+...............            .............+|.+  .+....+.+|+.+.|.|.+.|+|.|.+
T Consensus       179 Y~C~a~n~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i  244 (395)
T 1bih_A          179 YVCTAKNAAVDEEVVLVEYEIK------------GVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYP  244 (395)
T ss_dssp             EEEEEECTTCSSCEEEEEEEEC------------CCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCC
T ss_pred             EEEEEEecccceEEEeeeEEec------------ccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeE
Confidence            7777655443321111000000            00000000000123333  345678999999999999999999999


Q ss_pred             EEEECCEEccCCCceeEEE--eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE-EEEEecCCCC-------c-cc----
Q psy12422        222 SWTKNGQPLNSSNILDLKY--KNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTPLNSS-------N-IL----  286 (356)
Q Consensus       222 ~W~~~g~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~p~~~~-------~-~~----  286 (356)
                      .|+++|..+.......+..  ......|.|.+++.+|+|.|+|.|.|..|.... .+.|....+|       . ..    
T Consensus       245 ~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g  324 (395)
T 1bih_A          245 NYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQG  324 (395)
T ss_dssp             EEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTT
T ss_pred             EEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCC
Confidence            9999999887543322221  122237999999999999999999999998655 5555421111       0 00    


Q ss_pred             ---------------eeEEeCC------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy12422        287 ---------------DLKYKNG------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR  330 (356)
Q Consensus       287 ---------------~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  330 (356)
                                     .+.|..+            ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       325 ~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  395 (395)
T 1bih_A          325 QDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN  395 (395)
T ss_dssp             SCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CeEEEEEEECcccCCeeEEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEEC
Confidence                           3444331            1379999999999999999999999999999998873

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=3.3e-38  Score=273.94  Aligned_cols=307  Identities=24%  Similarity=0.307  Sum_probs=205.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCC-CCCeEEEEEEEeCCceeEE-EEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKP-EDSGEYKCVATNKHGTDET-NCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~n~~g~~~~-~~~l~v~~   77 (356)
                      |++++|.|.+.|.|.+.|+|+|||..+... .......++  .|.|.++.. +|+|.|+|.|.|..|...+ .+.|.|..
T Consensus        22 g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~--~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~   99 (382)
T 1cs6_A           22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGF   99 (382)
T ss_dssp             CCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT--EEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEE
T ss_pred             CCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCC--eEEEecccccccCEEEEEEEEcCCcEEEecceEEEeec
Confidence            789999999999999999999999998743 222334455  799999987 9999999999999887643 46666665


Q ss_pred             cccchhhhhhcccccccCccceeeeccc---CCceeeecccccccCCcccc----CCC-CceE--EEEeecccccccccc
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHT----DDT-GRTT--TQMSTLSSNYSSSTN  147 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~----~~~-~~~~--~~~~~~~~~~~~~~~  147 (356)
                      .+... ........+.+|+.+.|.|.+.   |.+.+.|++++.........    ... ....  .....+.|.|.|...
T Consensus       100 ~~~~~-~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  178 (382)
T 1cs6_A          100 LQEFS-AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFAT  178 (382)
T ss_dssp             ECCCC-SSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEE
T ss_pred             ccccc-ccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEE
Confidence            43222 1223445678999999999854   77889999987654211100    000 0000  012233344554443


Q ss_pred             ccCCCccceeeeeeccccCCCCCcccccceeeecCC-CCCCCCCeecc-cCCceeecCCCeEEEEEEEcCCCCCeEEEEE
Q psy12422        148 NATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPP-DTAMTPPQFAN-KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK  225 (356)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~  225 (356)
                      +.......               ...+....+.+.. .....+|.+.. .+....+.+|+.+.|.|.+.|+|.|.+.|++
T Consensus       179 n~~g~~~~---------------~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~  243 (382)
T 1cs6_A          179 SHIDFITK---------------SVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK  243 (382)
T ss_dssp             EEETTEEE---------------EEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEE
T ss_pred             Eccccccc---------------eeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEE
Confidence            22211000               0001112222111 01122454443 3467789999999999999999999999999


Q ss_pred             CCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc-------------------
Q psy12422        226 NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL-------------------  286 (356)
Q Consensus       226 ~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~-------------------  286 (356)
                      ++..+...      .......|.|.+++.+|+|.|+|.|.|..|.....+.+....+|.+.                   
T Consensus       244 ~~~~~~~~------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~  317 (382)
T 1cs6_A          244 LDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCV  317 (382)
T ss_dssp             CCSCCSCC------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECE
T ss_pred             CCcccccE------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEE
Confidence            88765431      11223489999999999999999999999988777666622111110                   


Q ss_pred             -------eeEEeCC-------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        287 -------DLKYKNG-------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       287 -------~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                             .+.|..+             .+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|++
T Consensus       318 ~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~a  382 (382)
T 1cs6_A          318 ASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA  382 (382)
T ss_dssp             EEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEeC
Confidence                   4455431             24799999999999999999999999999999999874

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=2.8e-36  Score=279.06  Aligned_cols=311  Identities=18%  Similarity=0.201  Sum_probs=207.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE--EEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET--NCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~--~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.|.|+|+|||..+...          ..|.|.+++.+|+|.|+|.|.|..|....  .+.|.|...
T Consensus       218 G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~  287 (642)
T 1e07_A          218 GENLNLSCHAASNPPAQYSWFVNGTFQQST----------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE  287 (642)
T ss_pred             CCEEEEEEEcCCCCCcEEEEEECCeEcccC----------CceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEcc
Confidence            789999999999999999999999988432          26999999999999999999999886654  455666554


Q ss_pred             ccchhhhhhcccccccCccceeeeccc-CCceeeecccccccCCccccC--CCCceE---EEEeeccccccccccccCCC
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIR-PAPAIITTRQEIKSSYSSHTD--DTGRTT---TQMSTLSSNYSSSTNNATSP  152 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~-p~p~i~w~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~  152 (356)
                      +..+.........+..|+.+.|.|.+. .++.+.|++++..+.......  ......   .....+.+.|.|.+.+... 
T Consensus       288 ~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-  366 (642)
T 1e07_A          288 PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELS-  366 (642)
T ss_pred             CCCCEEEcCCceeEecCCcEEEEEECCCCCccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCC-
Confidence            333322222334455678899999998 335799999876653321110  001111   1122334445544433221 


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS  232 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~  232 (356)
                                        ...+....+.+.    ..|+.....+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+..
T Consensus       367 ------------------~~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~  424 (642)
T 1e07_A          367 ------------------VDHSDPVILNVL----YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH  424 (642)
T ss_pred             ------------------CcceeeEEEEEE----cCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC
Confidence                              111222333331    1222223345567889999999999999999999999999988754


Q ss_pred             CCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE--EEecC---CCCccc---------------------
Q psy12422        233 SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC--KLTPL---NSSNIL---------------------  286 (356)
Q Consensus       233 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~--~l~p~---~~~~~~---------------------  286 (356)
                      .           ..|.|.+++.+|+|.|+|.|.|..|....+.  .+...   ..+.+.                     
T Consensus       425 ~-----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~  493 (642)
T 1e07_A          425 T-----------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA  493 (642)
T ss_pred             C-----------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC
Confidence            2           2699999999999999999999998765432  22211   111110                     


Q ss_pred             ---eeEEeC---------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEecCCCCCCCCCCcccCC
Q psy12422        287 ---DLKYKN---------------GVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTVRSTPAANLGKSPSKESDK  347 (356)
Q Consensus       287 ---~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~~~~~~~~~  347 (356)
                         .+.|..               ++..|.|.+++.+|+|.|+|.|.|..|.... .+.|.|..+|..+...++......
T Consensus       494 ~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~  573 (642)
T 1e07_A          494 QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLS  573 (642)
T ss_pred             CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEc
Confidence               334432               3468999999999999999999999998655 799999988765544433333333


Q ss_pred             CCceeEee
Q psy12422        348 APRFFAIV  355 (356)
Q Consensus       348 ~~~~~~~~  355 (356)
                      +....+.|
T Consensus       574 g~~~~l~C  581 (642)
T 1e07_A          574 GANLNLSC  581 (642)
T ss_pred             CCcEEEEE
Confidence            44444443

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=2.9e-35  Score=244.95  Aligned_cols=220  Identities=22%  Similarity=0.420  Sum_probs=181.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |++++|.|.+.|.|.+.|+|+|+|..+... ++.....++...|.|.+++.+|+|.|+|.+.|..|..+..+.|.|..++
T Consensus        20 G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p   99 (284)
T 2rik_A           20 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP   99 (284)
T ss_dssp             TCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             CCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCC
Confidence            789999999999999999999999999754 4555556667799999999999999999999999988888888775431


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                                                                                                      
T Consensus       100 --------------------------------------------------------------------------------   99 (284)
T 2rik_A          100 --------------------------------------------------------------------------------   99 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecc-cCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFAN-KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL  238 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~  238 (356)
                                                     .+.. ......+.+|+.+.|.|.+.|+|.+.+.|+++|..+........
T Consensus       100 -------------------------------~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~  148 (284)
T 2rik_A          100 -------------------------------RFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM  148 (284)
T ss_dssp             -------------------------------EEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEE
T ss_pred             -------------------------------cccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEE
Confidence                                           1111 11234578899999999999999999999999999988877777


Q ss_pred             EEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc--------------------------eeEEeC
Q psy12422        239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL--------------------------DLKYKN  292 (356)
Q Consensus       239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~--------------------------~~~~~~  292 (356)
                      ........|.|.+++.+|+|.|+|.|.|..|.....+.+....+|.+.                          .+.|..
T Consensus       149 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~  228 (284)
T 2rik_A          149 SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK  228 (284)
T ss_dssp             EEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEE
T ss_pred             EEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEE
Confidence            777778899999999999999999999999988887777733222211                          344432


Q ss_pred             -----------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        293 -----------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       293 -----------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                                       ....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  284 (284)
T 2rik_A          229 DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA  284 (284)
T ss_dssp             TTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             CCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEcC
Confidence                             235899999999999999999999999999999999863

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=1.7e-36  Score=263.81  Aligned_cols=305  Identities=19%  Similarity=0.295  Sum_probs=200.1

Q ss_pred             CCceEEEEEeccCCCCeeEEee-CCEEcccC-CeeEEecCCeEEEEEeeCCCCC------CeEEEEEEEeCCceeE-EEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK-GNRELSKR-DYSMSYSDGVVSMEIIDCKPED------SGEYKCVATNKHGTDE-TNC   71 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D------~G~Y~C~a~n~~g~~~-~~~   71 (356)
                      |++++|.|.+.|.|.|.|+|+| ||.++... .+.....++  +|.|.+++.+|      +|.|+|.|.|..|... ..+
T Consensus        19 G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~   96 (388)
T 2v5m_A           19 STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDV   96 (388)
T ss_dssp             TTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCE
T ss_pred             CccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCc--eEEecccChhhccccccCceEEEEEEccCCeEEecce
Confidence            7889999999999999999999 88888643 233344555  79999999987      9999999999988753 456


Q ss_pred             EEEEeccccchhhhhhcccccccCccceeeecccC-----CceeeecccccccCCccccCC-------CCceEE--EEee
Q psy12422         72 VVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRP-----APAIITTRQEIKSSYSSHTDD-------TGRTTT--QMST  137 (356)
Q Consensus        72 ~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p-----~p~i~w~~~~~~~~~~~~~~~-------~~~~~~--~~~~  137 (356)
                      .|.+...+...  .......+.+|+.+.|.|.+..     .+.+.|++++...........       ......  ....
T Consensus        97 ~v~v~~~p~~~--~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  174 (388)
T 2v5m_A           97 HVRAVVAQYYE--ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE  174 (388)
T ss_dssp             EEEEECCCCCC--CBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGG
T ss_pred             EEEEccccccc--cCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCcc
Confidence            66665443222  1233456789999999999872     267999998765432111000       011000  1222


Q ss_pred             cc-ccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeec-ccCCceeecCCCeEEEEEEEcC
Q psy12422        138 LS-SNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFA-NKLTDKTIDDGQCLDLSAVVKG  215 (356)
Q Consensus       138 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~~~l~C~~~g  215 (356)
                      +. +.|.|...+..                ............+.+.......+|.+. .......+.+|+.+.|.|.+.|
T Consensus       175 d~~G~Y~C~~~n~~----------------~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g  238 (388)
T 2v5m_A          175 DGYKSYQCRTKHRL----------------TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG  238 (388)
T ss_dssp             GGGCCEEEEEEETT----------------TCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEE
T ss_pred             ccCeeEEEEeccCC----------------CCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCC
Confidence            23 44555443221                111111111112222111001112211 1223456889999999999999


Q ss_pred             CCCCeEEEEECCEEcc------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc---
Q psy12422        216 DPEPRVSWTKNGQPLN------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL---  286 (356)
Q Consensus       216 ~p~p~i~W~~~g~~~~------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~---  286 (356)
                      +|.|.+.|++++..+.      ...++  ....+  .|.|.+++.+|+|.|+|.|.|..|.....+.|.+..++.+.   
T Consensus       239 ~p~p~v~W~~~~~~~~~~~~~~~~~~~--~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~  314 (388)
T 2v5m_A          239 FPAPSFRWYKFIEGTTRKQAVVLNDRV--KQVSG--TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP  314 (388)
T ss_dssp             ESCCEEEEEEECTTSSCEEECCCSSSE--EEETT--EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEES
T ss_pred             CCCCEEEEEecCCCCcccccccccCce--ecccC--EEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCC
Confidence            9999999999753322      22222  22233  89999999999999999999999988777666622111110   


Q ss_pred             -----------------------eeEEeC-------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12422        287 -----------------------DLKYKN-------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV  329 (356)
Q Consensus       287 -----------------------~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  329 (356)
                                             .+.|..       ..+.|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus       315 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          315 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             SEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence                                   455543       3468999999999999999999999999999999876

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=9.3e-36  Score=269.10  Aligned_cols=303  Identities=14%  Similarity=0.148  Sum_probs=209.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE   80 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~   80 (356)
                      |++++|.|.+.+    .|+|+|+|.++.     ..  ....+|+|.+++.+|+|.|+|.+.|  |. +..+.|.|.+++.
T Consensus        51 G~~v~l~C~~~~----~v~W~~~~~~~~-----~~--~~~~~L~I~~~~~~D~G~Y~C~a~n--g~-~~~~~l~V~~p~~  116 (524)
T 2ec8_A           51 GDEIRLLCTDPG----FVKWTFEILDET-----NE--NKQNEWITEKAEATNTGKYTCTNKH--GL-SNSIYVFVRDPAK  116 (524)
T ss_dssp             TSCEEEEEECTT----EEEEEEESSSCC-----EE--ECSSEEEESSCCSTTCEEEEEEETT--SC-EEEEEEECCCSSC
T ss_pred             CCeEEEEEeCCc----eEEEcCCCcccc-----cc--CccceEEEcccchhhCEEEEEeecC--Cc-ceEEEEEECCCCc
Confidence            789999999976    899999998772     11  2234899999999999999999999  53 6777888876544


Q ss_pred             chhhhhhcccccccCccceeeeccc--CCceeeecc-cccccCCcccc--CCCCceE--EEEeeccc-cccccccccCCC
Q psy12422         81 SKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTR-QEIKSSYSSHT--DDTGRTT--TQMSTLSS-NYSSSTNNATSP  152 (356)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~-~~~~~~~~~~~--~~~~~~~--~~~~~~~~-~~~~~~~~~~~~  152 (356)
                      ..  .......+.+|+.+.|.|.+.  +.+.+.|++ ++..+......  .......  .....+.+ .|.|.+.+..  
T Consensus       117 ~~--~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~--  192 (524)
T 2ec8_A          117 LF--LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEG--  192 (524)
T ss_dssp             SB--CCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC-----
T ss_pred             cc--ccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECC--
Confidence            33  334456678999999999998  336799988 44333221111  0011100  01223334 4555443211  


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEc-
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPL-  230 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~-  230 (356)
                                       ....+....+.+.. ....+|.+...+....+.+|+.+.|.|.+.|.|.|. +.|++++..+ 
T Consensus       193 -----------------~~~~s~~~~l~V~~-~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~  254 (524)
T 2ec8_A          193 -----------------KSVLSEKFILKVRP-AFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTK  254 (524)
T ss_dssp             ------------------CCCCCCEECCEEC-CCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCC
T ss_pred             -----------------ceEEEEEEEEEEEe-CCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCc
Confidence                             11111122232211 114678888888788999999999999999999887 9999999873 


Q ss_pred             -cCCCceeEE---EeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc--------------------
Q psy12422        231 -NSSNILDLK---YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL--------------------  286 (356)
Q Consensus       231 -~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~--------------------  286 (356)
                       .......+.   .......|.|.+++.+|+|.|+|.|.|..|.....+.|.+...+.+.                    
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~  334 (524)
T 2ec8_A          255 LQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLI  334 (524)
T ss_dssp             CCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEE
T ss_pred             cccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEE
Confidence             322221111   11224689999999999999999999999988877776632211110                    


Q ss_pred             ---------e-eEEeCC----------------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422        287 ---------D-LKYKNG----------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       287 ---------~-~~~~~~----------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  334 (356)
                               . +.|..+                      ...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|+.+|.
T Consensus       335 C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~  414 (524)
T 2ec8_A          335 VEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPE  414 (524)
T ss_dssp             EEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEE
T ss_pred             EEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCe
Confidence                     3 666541                      35899999999999999999999999999999999999988


Q ss_pred             CCCCC
Q psy12422        335 ANLGK  339 (356)
Q Consensus       335 ~~~~~  339 (356)
                      +...+
T Consensus       415 i~~~~  419 (524)
T 2ec8_A          415 ILTYD  419 (524)
T ss_dssp             EEEEE
T ss_pred             Eeecc
Confidence            75543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=2.5e-35  Score=279.86  Aligned_cols=325  Identities=21%  Similarity=0.316  Sum_probs=227.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcc------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELS------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |+++.|.|.+.|.|.|.|+|+|++....      ... .....++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus       263 g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~-~~~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~  339 (816)
T 3dmk_A          263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND-RVKQVSG--TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT  339 (816)
T ss_dssp             TSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSS-SEEEETT--EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCC-ceEeccc--eEEECCCCHhHCEEEEEEEEcCCCceEEEEEEE
Confidence            7899999999999999999999543221      111 1222233  899999999999999999999999988888888


Q ss_pred             EeccccchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCC
Q psy12422         75 VESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSP  152 (356)
Q Consensus        75 v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (356)
                      |..++...  .......+.+|+.+.|.|.+.  |.+.+.|++++..+.....   ..........+.+.|.|.+.+... 
T Consensus       340 V~~~~~~~--~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~n~~g-  413 (816)
T 3dmk_A          340 VTAPLSAK--IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---VLRIESVKKEDKGMYQCFVRNDRE-  413 (816)
T ss_dssp             ECEEEEEE--EESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCSS---EEEESSCCGGGCEEEEEEEECSSC-
T ss_pred             EcCCCcee--eCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCCC---EEEEcCCCHHHCEEEEEEEECCCC-
Confidence            87643221  223345678999999999987  7888999998766532210   000011123334555554432211 


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS  232 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~  232 (356)
                                         .......+.+.  ....+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+..
T Consensus       414 -------------------~~~~~~~l~v~--~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~  472 (816)
T 3dmk_A          414 -------------------SAEASAELKLG--GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN  472 (816)
T ss_dssp             -------------------EEEECCEEECC--CSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCS
T ss_pred             -------------------cEEEEEEEEEc--cccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCC
Confidence                               11122233332  225678887777778899999999999999999999999999999987


Q ss_pred             CCceeEEE----e-CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc---------------------
Q psy12422        233 SNILDLKY----K-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL---------------------  286 (356)
Q Consensus       233 ~~~~~~~~----~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~---------------------  286 (356)
                      ...+....    . .....|.|.+++.+|+|.|+|.|.|..|....++.+.+...+.+.                     
T Consensus       473 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g  552 (816)
T 3dmk_A          473 NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAG  552 (816)
T ss_dssp             CTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEEC
T ss_pred             CCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecC
Confidence            66554321    1 123579999999999999999999999998888877743332211                     


Q ss_pred             ----eeEEeC--------------CeEEEEEecCC-CCCCeEEEEEEEcCCcce-EEEEEEEEEecCCCCCCCCCCcccC
Q psy12422        287 ----DLKYKN--------------GVASLQIQEVF-PEDEGVYVCTATNSLGTA-ETKCKLTVRSTPAANLGKSPSKESD  346 (356)
Q Consensus       287 ----~~~~~~--------------~~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~  346 (356)
                          .+.|.+              .++.|.|.++. .+|+|.|+|.|.|..|.. ...+.|.|..+|.+.....+.....
T Consensus       553 ~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~  632 (816)
T 3dmk_A          553 YPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQ  632 (816)
T ss_dssp             SSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEE
T ss_pred             CCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccC
Confidence                345543              24579999998 689999999999999964 4588999999988766554444444


Q ss_pred             CCCceeEee
Q psy12422        347 KAPRFFAIV  355 (356)
Q Consensus       347 ~~~~~~~~~  355 (356)
                      .+....+.|
T Consensus       633 ~G~~v~L~C  641 (816)
T 3dmk_A          633 VGQYLTLHC  641 (816)
T ss_dssp             SSCEEEEEE
T ss_pred             CCCeEEEEE
Confidence            444444443

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=2.3e-35  Score=280.05  Aligned_cols=307  Identities=20%  Similarity=0.344  Sum_probs=215.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-eeEE---ec--CCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMS---YS--DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~---~~--~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |+++.|.|.+.|.|.|.|+|+|+|..+.... +...   ..  +....|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus       444 G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  523 (816)
T 3dmk_A          444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN  523 (816)
T ss_dssp             SSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEE
Confidence            7899999999999999999999999997543 2221   12  2335799999999999999999999999999999999


Q ss_pred             EeccccchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccC--CCCceEEE--E-eecccccccccc
Q psy12422         75 VESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTD--DTGRTTTQ--M-STLSSNYSSSTN  147 (356)
Q Consensus        75 v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~--~~~~~~~~--~-~~~~~~~~~~~~  147 (356)
                      |...+..   .......+.+|+.+.|.|.+.  |.+.+.|++++..+.......  ..+.....  . ..+.+.|.|.+.
T Consensus       524 V~~~p~~---~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~  600 (816)
T 3dmk_A          524 VYGLPYI---RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAK  600 (816)
T ss_dssp             ECSSCEE---CCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEE
T ss_pred             EecCCee---EccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEE
Confidence            9876432   223345678999999999987  667799999887664332111  11111111  1 133455555543


Q ss_pred             ccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeec-ccCCceeecCCCeEEEEEEEcCCCCC-eEEEEE
Q psy12422        148 NATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFA-NKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTK  225 (356)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~  225 (356)
                      +..+                   ........+.+     ..+|.+. .......+.+|+.+.|.|.+.+.|+| .+.|++
T Consensus       601 n~~g-------------------~~~~~~~~v~v-----~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~  656 (816)
T 3dmk_A          601 NQEG-------------------YSARGSLEVQV-----MVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL  656 (816)
T ss_dssp             ESSS-------------------CEEEEEEEEEE-----ECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEE
T ss_pred             ECCC-------------------ceeeeeEEEEE-----ecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEE
Confidence            3321                   11122233333     2223222 22345568899999999999876655 899999


Q ss_pred             CCEEccCCCceeEE-EeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc------------------
Q psy12422        226 NGQPLNSSNILDLK-YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL------------------  286 (356)
Q Consensus       226 ~g~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~------------------  286 (356)
                      +|..+......... .....+.|.|.+++.+|+|.|+|.|.|..|....++.|.+..+|.+.                  
T Consensus       657 ~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C  736 (816)
T 3dmk_A          657 DGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVEC  736 (816)
T ss_dssp             TTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEEEEC
T ss_pred             CCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEEEEE
Confidence            99988765544433 33456789999999999999999999999998887777632222111                  


Q ss_pred             --------eeEEeC--------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422        287 --------DLKYKN--------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       287 --------~~~~~~--------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  334 (356)
                              .+.|..                    .++.|.|.+++.+|+|.|+|.|.|..|.+...+.+..+..+.
T Consensus       737 ~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~~~~~  812 (816)
T 3dmk_A          737 KADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH  812 (816)
T ss_dssp             EEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEEEC--
T ss_pred             EEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEeeccc
Confidence                    344432                    124799999999999999999999999999988877766554

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=7.4e-35  Score=269.56  Aligned_cols=300  Identities=18%  Similarity=0.267  Sum_probs=209.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.| +.++|+|||+.+.... +.+...+  ..|.|.+++.+|+|.|+|.|.|..|... ..+.|.|...
T Consensus       304 g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~  380 (642)
T 1e07_A          304 EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG  380 (642)
T ss_pred             CCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCC--CEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcC
Confidence            56799999999886 7999999999987543 2222222  3899999999999999999999988753 4578888765


Q ss_pred             ccchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccce
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKI  156 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      +..+.. ......+.+|+.+.|.|.+.  |.|.+.|++++..+....    ..........+.+.|.|.+.+..+..   
T Consensus       381 p~~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~---  452 (642)
T 1e07_A          381 PDDPTI-SPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ----ELFISNITEKNSGLYTCQANNSASGH---  452 (642)
T ss_pred             CCCCee-cCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCc----eEEEccCChhhCeEEEEEEEcCCCCC---
Confidence            443322 22344678999999999986  788899999876543211    00111112344555666654433211   


Q ss_pred             eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCce
Q psy12422        157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL  236 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~  236 (356)
                                   .  .+....+.+..  ...+|.+.. .....+.+|+.+.|.|.+.+ |.+.+.|+++|..+....++
T Consensus       453 -------------~--~s~~~~v~v~~--~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~  513 (642)
T 1e07_A          453 -------------S--RTTVKTITVSA--ELPKPSISS-NNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRL  513 (642)
T ss_pred             -------------c--ccceEEEEEec--cCCCceEec-CCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcE
Confidence                         1  11222333311  123455543 34567889999999999994 88999999999999877665


Q ss_pred             eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE-EEEEecCCCC--------ccc-------------------ee
Q psy12422        237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTPLNSS--------NIL-------------------DL  288 (356)
Q Consensus       237 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~p~~~~--------~~~-------------------~~  288 (356)
                      .+..+  ...|.|.+++.+|+|.|+|.|.|..|.... .+.|.....|        ...                   .+
T Consensus       514 ~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v  591 (642)
T 1e07_A          514 QLSNG--NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQY  591 (642)
T ss_pred             EEcCC--CcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeE
Confidence            54433  358999999999999999999999997533 3344311100        000                   55


Q ss_pred             EEeCC------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy12422        289 KYKNG------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST  332 (356)
Q Consensus       289 ~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  332 (356)
                      .|.++      ...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...
T Consensus       592 ~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v~  641 (642)
T 1e07_A          592 SWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS  641 (642)
T ss_pred             EEEECCEECccCceEEECcccccCCeEEEEEEEecccCcceeEEEEEEEc
Confidence            66543      357999999999999999999999999999998888753

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=8.5e-36  Score=267.40  Aligned_cols=305  Identities=17%  Similarity=0.127  Sum_probs=189.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE-EEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN-CVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~v~~~~   79 (356)
                      |+.+.|.|.+.|.|.|.|+|++++.++....   .............++.+|+|.|+|.|.|..|..... +.|.|...+
T Consensus       154 ~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p  230 (527)
T 3qs9_E          154 ENQDALVCISESVPEPIVEWVLCDSQGESCK---EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTP  230 (527)
T ss_dssp             SSSSCEEEEEEESSCCEEEEEEC----------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCC
T ss_pred             CCceEEEEEEceecCCeEEEEECCCCCcccc---ccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccC
Confidence            4567899999999999999999988764221   111122233334456899999999999999988665 677776554


Q ss_pred             cchhhhhhcccccccCccceeeeccc---CCceeeecccccccCCccccC----CCCceEEEEeeccccccccccccCCC
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHTD----DTGRTTTQMSTLSSNYSSSTNNATSP  152 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (356)
                      ..    ......+.+|+.+.|.|.+.   |.|.+.|++++..+.......    ........       ..-+.......
T Consensus       231 ~~----~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~-------~~~L~I~~v~~  299 (527)
T 3qs9_E          231 QT----TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIR-------ILFAFVSSVAR  299 (527)
T ss_dssp             CC----SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEE-------EEEEEESSCCG
T ss_pred             cc----CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceee-------EEEEEEccCCc
Confidence            33    23355678999999999984   677899999887654321110    00000000       00011112223


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC--CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL--TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL  230 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~  230 (356)
                      .+.+.|.|.+...       ......+.+     ..+|.+...+  ....+.+|+.+.|.|.+.|+|.|.|.|+|+|..+
T Consensus       300 ~DsG~Y~C~a~N~-------~~~~~~L~V-----~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l  367 (527)
T 3qs9_E          300 NDTGYYTCSSSKH-------PSQSALVTI-----VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF  367 (527)
T ss_dssp             GGCEEEEEEETTE-------EEEEEEEEE-----C--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEE
T ss_pred             ccCeEEEEEEEeC-------CCceEEEEE-----EccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEEC
Confidence            3333333332221       223344444     3445444333  3467889999999999999999999999999998


Q ss_pred             cCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc------------------eeEEeC
Q psy12422        231 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL------------------DLKYKN  292 (356)
Q Consensus       231 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~------------------~~~~~~  292 (356)
                      .......    .....|.|.+++.+|+|.|+|.|.|..|.....+.|.+..+|.+.                  .+.|..
T Consensus       368 ~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~~~~~l~C~a~g~P~p~i~W~~  443 (527)
T 3qs9_E          368 PCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKK  443 (527)
T ss_dssp             ECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECCCCE---EEEECSSCCEEEEEC
T ss_pred             cCCcccc----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeCCCCEEEEEEEEEcCCeEEEEE
Confidence            7654321    123479999999999999999999999999888888755444332                  455532


Q ss_pred             C----------------------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCC
Q psy12422        293 G----------------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAA  335 (356)
Q Consensus       293 ~----------------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  335 (356)
                      .                            ...+.|.-...+|+|.|+|.|.|.+|..+..+.|.|.++-.+
T Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p~~~  514 (527)
T 3qs9_E          444 CSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPF  514 (527)
T ss_dssp             CC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC--------
T ss_pred             CCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCCcee
Confidence            1                            122333333356999999999999999999999988776443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=5.6e-34  Score=260.94  Aligned_cols=320  Identities=16%  Similarity=0.147  Sum_probs=203.9

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeCCEEcc--------------cCCeeEEec---CCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKGNRELS--------------KRDYSMSYS---DGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~g~~l~--------------~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |+++.|.|.+.+. |.+.+.|||++....              ..+..+...   .+.++|.|.+++.+|+|.|+|.|.|
T Consensus       127 G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  206 (585)
T 2ocw_A          127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGD  206 (585)
T ss_pred             CCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEecc
Confidence            7899999999765 457899999876421              122222222   2345899999999999999999999


Q ss_pred             CCceeEEEEEEEEeccccchhhhhhcccccccCccceeeeccc-CC---ceeeec-ccccccCCcccc------CCCCce
Q psy12422         63 KHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR-PA---PAIITT-RQEIKSSYSSHT------DDTGRT  131 (356)
Q Consensus        63 ~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~-p~---p~i~w~-~~~~~~~~~~~~------~~~~~~  131 (356)
                      ..|.....+.|.|..+++       ....+.+|+.+.|.|.+. +.   +.+.|. +++.........      ....+.
T Consensus       207 ~~g~~~~~~~l~V~~~~p-------~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~  279 (585)
T 2ocw_A          207 DSNSNKKNADLQVLKPEP-------ELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRI  279 (585)
T ss_pred             CCccccceEEEEEccCCC-------ceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCce
Confidence            999988889999876432       122467899999999976 33   567776 554221110000      001111


Q ss_pred             EEEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEE
Q psy12422        132 TTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSA  211 (356)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C  211 (356)
                      ........+.+. +........+.+.|.|..................+.+     ..+|.+...+....+.+|+.+.|.|
T Consensus       280 ~~~~~~~~g~~~-L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V-----~~~p~~~~~~~~~~~~~G~~v~l~C  353 (585)
T 2ocw_A          280 LLNPQDKDGSFS-VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFV-----NEESTIPRSPTVVKGVAGSSVAVLC  353 (585)
T ss_pred             EeeccCCCcEEE-EEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEE-----ecccccccCCcceEEEeCCcEEEEE
Confidence            000000011111 1112223333344444333211100001113344555     4556666667788899999999999


Q ss_pred             EEcCCCCCeE----EEEE--CCE--EccC---------CCceeEEE--eCCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        212 VVKGDPEPRV----SWTK--NGQ--PLNS---------SNILDLKY--KNGVASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       212 ~~~g~p~p~i----~W~~--~g~--~~~~---------~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      .+.|.|.|.+    .|++  ||.  .+..         ..++.+..  ..+..+|.|.+++.+|+|.|+|.| |..|...
T Consensus       354 ~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~  432 (585)
T 2ocw_A          354 PYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWR  432 (585)
T ss_pred             ecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccc
Confidence            9999999987    7999  886  4432         22232222  234456999999999999999999 9888877


Q ss_pred             EEEEEecCCC-Cccc-----------------------------eeEEeCC------------------------eEEEE
Q psy12422        273 TKCKLTPLNS-SNIL-----------------------------DLKYKNG------------------------VASLQ  298 (356)
Q Consensus       273 ~~~~l~p~~~-~~~~-----------------------------~~~~~~~------------------------~~~L~  298 (356)
                      ..+.|..... +.+.                             .+.|.++                        ...|.
T Consensus       433 ~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~  512 (585)
T 2ocw_A          433 TTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLT  512 (585)
T ss_pred             eeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEE
Confidence            7666662210 1000                             2344331                        15899


Q ss_pred             EecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEecCC
Q psy12422        299 IQEVFPEDEGVYVCTATNSLGTAET-KCKLTVRSTPA  334 (356)
Q Consensus       299 i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~  334 (356)
                      |.+++.+|+|.|+|.|.|..|..+. .+.|.|+.+|.
T Consensus       513 i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p~  549 (585)
T 2ocw_A          513 LNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKA  549 (585)
T ss_pred             ECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeeee
Confidence            9999999999999999999997776 59999999984

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=8.5e-35  Score=262.74  Aligned_cols=320  Identities=15%  Similarity=0.173  Sum_probs=198.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--EEcc-------------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--RELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~~l~-------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++++|.|.+.+.|.+.|.|||++  ..+.             ..++.....++..+|+|.+++.+|+|.|+|.|.|..|
T Consensus        15 G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g   94 (523)
T 2rcj_C           15 GQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSD   94 (523)
T ss_pred             CCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEEEEEccCCC
Confidence            799999999999999999999974  2211             1233333345567899999999999999999999866


Q ss_pred             e---eEEEEEEEEeccccchhh--hhhcccccccCccceeeeccc--CC--ceeeecccccccCCccccC-----CCCce
Q psy12422         66 T---DETNCVVIVESEEESKEQ--QELAHNFLYSGDRKYIEKHIR--PA--PAIITTRQEIKSSYSSHTD-----DTGRT  131 (356)
Q Consensus        66 ~---~~~~~~l~v~~~~~~~~~--~~~~~~~~~~g~~~~l~c~~~--p~--p~i~w~~~~~~~~~~~~~~-----~~~~~  131 (356)
                      .   ....+.|.|...+..++.  .......+.+|+.+.|.|.+.  |+  +.+.|++++..+.......     .++..
T Consensus        95 ~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~  174 (523)
T 2rcj_C           95 NSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKY  174 (523)
T ss_pred             ccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCE
Confidence            3   234567777543211111  112223456799999999987  33  3799999877654322110     11110


Q ss_pred             -----EE---EEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecC
Q psy12422        132 -----TT---QMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDD  203 (356)
Q Consensus       132 -----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~  203 (356)
                           ..   ....+.+.|.|.+.+.....                    .....+... .....+|.+........+.+
T Consensus       175 ~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~--------------------~~~~~~~~~-~~~~~~P~v~~~~~~~~~~~  233 (523)
T 2rcj_C          175 AASSYLSLTPEQWKSHRSYSCQVTHEGSTV--------------------EKTVAPTEC-SASTKGPSVFPLAPSSKSTS  233 (523)
T ss_pred             EEEEEEEEechhcCCCceEEEEEEecCccc--------------------ccceeeeec-CCCCcCCEEEecCCCccccc
Confidence                 00   11234555666654432211                    011111100 01134555553333445789


Q ss_pred             CCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        204 GQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       204 g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      |+.+.|.|.+.|. |.| .|.|+++|..+...........++    .+.|.|.+++.+| |.|+|.|.|..|.......+
T Consensus       234 G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l  312 (523)
T 2rcj_C          234 GGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV  312 (523)
T ss_pred             CCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEec
Confidence            9999999999886 877 899999998754311111111112    3589999999999 99999999999986555544


Q ss_pred             ecCC-------C-----------------------Cc--cceeEEeCC----------------------eEEEEEecCC
Q psy12422        278 TPLN-------S-----------------------SN--ILDLKYKNG----------------------VASLQIQEVF  303 (356)
Q Consensus       278 ~p~~-------~-----------------------~~--~~~~~~~~~----------------------~~~L~i~~v~  303 (356)
                      .+..       .                       +.  ...+.|.++                      .+.|.|.++.
T Consensus       313 ~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~  392 (523)
T 2rcj_C          313 EPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQN  392 (523)
T ss_pred             CCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHH
Confidence            2100       0                       00  013444331                      1358898899


Q ss_pred             CCCCeEEEEEEEcCCcceEEEEEEE----EEecCCCCCCCCCC
Q psy12422        304 PEDEGVYVCTATNSLGTAETKCKLT----VRSTPAANLGKSPS  342 (356)
Q Consensus       304 ~~d~G~Y~C~a~n~~g~~~~~~~l~----V~~~p~~~~~~~~~  342 (356)
                      .+|+|.|+|.|.|..|.......|.    +..+|.+...+.+.
T Consensus       393 ~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~  435 (523)
T 2rcj_C          393 WLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSR  435 (523)
T ss_pred             hcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCEEEEeCCCh
Confidence            9999999999999888766555565    45667665544443

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=1.5e-36  Score=274.24  Aligned_cols=324  Identities=12%  Similarity=0.091  Sum_probs=198.0

Q ss_pred             CCceEEEEEeccCCCCeeEEee-CCEEcccCCeeEEecCCeEEEEEeeCCCCCCe-EEEEEEEeCCceeEE-EEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDET-NCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~g~~~~-~~~l~v~~   77 (356)
                      |+++.|.|.+.+.|.+.|+||| ||..+..........++  .|.|.+++.+|+| .|+|.|.|..+...+ .+.|.|..
T Consensus       129 G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~--~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~  206 (524)
T 2ec8_A          129 DNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKA--GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRP  206 (524)
T ss_dssp             TSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTT--EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEEC
T ss_pred             CCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCc--cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEe
Confidence            7899999999987779999998 88888755433333344  7999999999999 999999998776543 67777763


Q ss_pred             cccc-hh-hhhhcccccccCccceeeeccc--CCce-eeeccccccc--CCcccc-CCCCceEEEEeecccccccccccc
Q psy12422         78 EEES-KE-QQELAHNFLYSGDRKYIEKHIR--PAPA-IITTRQEIKS--SYSSHT-DDTGRTTTQMSTLSSNYSSSTNNA  149 (356)
Q Consensus        78 ~~~~-~~-~~~~~~~~~~~g~~~~l~c~~~--p~p~-i~w~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  149 (356)
                      .... +. ........+.+|+.+.|.|.+.  |.|. +.|++++...  ...... ........      . ........
T Consensus       207 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~L~I~~  279 (524)
T 2ec8_A          207 AFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE------R-QATLTISS  279 (524)
T ss_dssp             CCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEE------E-EEEEEESS
T ss_pred             CCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccc------e-EEEEEECC
Confidence            2111 11 1122334688999999999987  6666 9999988763  111100 00000000      0 00111112


Q ss_pred             CCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC---CceeecCCCeEEEEEEEcCCCCCe-EEEEE
Q psy12422        150 TSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL---TDKTIDDGQCLDLSAVVKGDPEPR-VSWTK  225 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~  225 (356)
                      ....+.+.|.|......+    .......+.+     ..+|.+...+   ....+.+|+.+.|.|.+.|+|.|. +.|++
T Consensus       280 ~~~~D~G~Y~C~a~n~~g----~~~~~~~l~V-----~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k  350 (524)
T 2ec8_A          280 ARVNDSGVFMCYANNTFG----SANVTTTLEV-----VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY  350 (524)
T ss_dssp             CCTTTCEEEEEEEECSSC----EEEEEEEEEE-----ESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEES
T ss_pred             CCHHHCEEEEEEEEecCC----ceEEEEEEEE-----eccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEE
Confidence            233344444444322211    1122444444     4456655433   468899999999999999999999 99999


Q ss_pred             CCEEccCCCc-eeEEEeC----CEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc--------------
Q psy12422        226 NGQPLNSSNI-LDLKYKN----GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL--------------  286 (356)
Q Consensus       226 ~g~~~~~~~~-~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~--------------  286 (356)
                      +|..+..... +.....+    ....|.|.+++.+|+|.|+|.|.|..|....++.|.+..+|.+.              
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~~~~g~l~C~~  430 (524)
T 2ec8_A          351 MNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVA  430 (524)
T ss_dssp             SSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEEECCSSSCEEEEE
T ss_pred             CCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeecccCcCcEEEEEE
Confidence            9998876542 2221111    24689999999999999999999999998888777733222211              


Q ss_pred             ------eeEEeCCe-------------------------EEEE----EecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        287 ------DLKYKNGV-------------------------ASLQ----IQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       287 ------~~~~~~~~-------------------------~~L~----i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                            .+.|..+.                         +.|.    |.....+|+|.|+|.|.|..|..+..+.|.|+.
T Consensus       431 ~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e  510 (524)
T 2ec8_A          431 AGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG  510 (524)
T ss_dssp             EEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC--
T ss_pred             EeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEec
Confidence                  34443321                         2233    333336999999999999999999999999999


Q ss_pred             cCCCCCCCCCC
Q psy12422        332 TPAANLGKSPS  342 (356)
Q Consensus       332 ~p~~~~~~~~~  342 (356)
                      ++.....+.+.
T Consensus       511 ~~~~~~~~~~~  521 (524)
T 2ec8_A          511 NNKEQIHPHHH  521 (524)
T ss_dssp             -----------
T ss_pred             CCHHHcCcccc
Confidence            88766555443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=4.3e-36  Score=258.77  Aligned_cols=288  Identities=14%  Similarity=0.152  Sum_probs=192.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcc-c--------------CCeeEEe---cCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELS-K--------------RDYSMSY---SDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~-~--------------~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |+++.|.|.+.+.|.+.|.|||++..+. .              .++....   .++..+|.|.+++.+|+|.|+|.|.|
T Consensus         9 G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n   88 (363)
T 1wio_A            9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVED   88 (363)
T ss_dssp             TSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEEEEETT
T ss_pred             CCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEEEEEEE
Confidence            7999999999999999999999985421 0              1111111   33455899999999999999999988


Q ss_pred             CCceeEEEEEEEEeccccchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCCceEEEEeeccc
Q psy12422         63 KHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSS  140 (356)
Q Consensus        63 ~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (356)
                      ..+    .+.|.|.....      .+...+.+|+.+.|.|.+.  |.|.+.|++++......   ............+.|
T Consensus        89 ~~~----~~~l~V~~~~~------~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~L~i~~v~~~d~G  155 (363)
T 1wio_A           89 QKE----EVQLLVFGLTA------NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG---GKTLSVSQLELQDSG  155 (363)
T ss_dssp             EEE----EEEEEEEEEEE------SSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEEE---SSEEEECSBCGGGCE
T ss_pred             CCC----cEEEEEEeCCC------CCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCccccc---ceEEEEeeCChhcCC
Confidence            643    55666654221      2223678999999999986  77889999886543110   000001111334456


Q ss_pred             cccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC-----
Q psy12422        141 NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-----  215 (356)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-----  215 (356)
                      .|.|.+.+.                    .........+.+     ..+|..   +....+.+|+.+.|.|.+.+     
T Consensus       156 ~Y~C~a~~~--------------------~~~~~~~~~l~v-----~~~p~~---~~~~~~~~G~~v~l~C~~~~~~~~~  207 (363)
T 1wio_A          156 TWTCTVLQN--------------------QKKVEFKIDIVV-----LAFQKA---SSIVYKKEGEQVEFSFPLAFTVEKL  207 (363)
T ss_dssp             ECEEEEEET--------------------TEEEEECCEECE-----ECCSCS---EEEEEEETBCCEEEECCCCCCCCSS
T ss_pred             EEEEEEecC--------------------CCeEEEEEEEEE-----ecCCCC---CCceEEecCCEEEEEEEEecccccC
Confidence            666665221                    111111222222     112221   14567889999999998877     


Q ss_pred             CCCCeEEEEECCEEccC--------CCceeEEE----------eCCEEEEEEccCCCCCCeEEEEEEEcC--CCceEEEE
Q psy12422        216 DPEPRVSWTKNGQPLNS--------SNILDLKY----------KNGVASLQIQEVFPEDEGVYVCTATNS--LGTAETKC  275 (356)
Q Consensus       216 ~p~p~i~W~~~g~~~~~--------~~~~~~~~----------~~~~~~L~i~~v~~~d~G~Y~C~a~n~--~g~~~~~~  275 (356)
                      +|.|.+.|+++|..+..        ...+.+..          ..+...|.|.+++.+|+|.|+|.|.|.  .|.....+
T Consensus       208 ~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~  287 (363)
T 1wio_A          208 TGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEV  287 (363)
T ss_dssp             CEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEE
T ss_pred             CCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEE
Confidence            88899999999988765        33333322          222458999999999999999999999  99887776


Q ss_pred             EEecC---------------CCCccceeEEeCC------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy12422        276 KLTPL---------------NSSNILDLKYKNG------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR  330 (356)
Q Consensus       276 ~l~p~---------------~~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  330 (356)
                      .|.+.               .++....+.|.++      ...|.|.+++.+|+|.|+|.|+|. |....+..|.|.
T Consensus       288 ~l~V~~v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V~  362 (363)
T 1wio_A          288 NLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL  362 (363)
T ss_dssp             EEEEEEECCCSSSEEEEEESSCCTTCCEEEECSSSSCSEEESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred             eEEEEEecCCCeeEEEEEccccCCCccEEEEeCCCceeeeeeeeeeeeccccceeEEEEEecC-CeEEEecceEec
Confidence            66522               1111113667652      467899999999999999999975 566667776663

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=8.1e-34  Score=238.56  Aligned_cols=229  Identities=24%  Similarity=0.407  Sum_probs=160.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEE-ecCC-eEEEEEeeCCC-CCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMS-YSDG-VVSMEIIDCKP-EDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~-~~~~-~~~L~i~~~~~-~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.|+|+|+|..+...++... ..++ ...|.|.+++. +|+|.|+|.|.|..|.....+.|.|..
T Consensus        21 G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  100 (304)
T 2yd9_A           21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLR  100 (304)
T ss_dssp             TSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEEC
T ss_pred             CCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEec
Confidence            78999999999999999999999999976665443 2333 37899999998 999999999999999988888888874


Q ss_pred             cccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcccee
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT  157 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      .+..+                                                                           
T Consensus       101 ~~~~p---------------------------------------------------------------------------  105 (304)
T 2yd9_A          101 EDQLP---------------------------------------------------------------------------  105 (304)
T ss_dssp             GGGCC---------------------------------------------------------------------------
T ss_pred             cccCC---------------------------------------------------------------------------
Confidence            31100                                                                           


Q ss_pred             eeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCce-
Q psy12422        158 RRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL-  236 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~-  236 (356)
                                                   ...|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+...... 
T Consensus       106 -----------------------------~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~  156 (304)
T 2yd9_A          106 -----------------------------SGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNG  156 (304)
T ss_dssp             -----------------------------TTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTT
T ss_pred             -----------------------------CCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcc
Confidence                                         12244555555677899999999999999999999999999988754321 


Q ss_pred             eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE---EEEEEecC-CCCc---------cc-----------------
Q psy12422        237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE---TKCKLTPL-NSSN---------IL-----------------  286 (356)
Q Consensus       237 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~---~~~~l~p~-~~~~---------~~-----------------  286 (356)
                      .+.. .....|.|.+++.+|+|.|+|.|.|..|...   ..+.+... .+|.         +.                 
T Consensus       157 ~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p  235 (304)
T 2yd9_A          157 RIKQ-LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP  235 (304)
T ss_dssp             SEEE-CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCC
T ss_pred             eEEe-CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCC
Confidence            1111 1223899999999999999999999998765   34444210 0000         00                 


Q ss_pred             eeEEeC-------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCC
Q psy12422        287 DLKYKN-------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAAN  336 (356)
Q Consensus       287 ~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  336 (356)
                      .+.|..             +...|.|.++  +|+|.|+|.|.|..|..+..+.|.|++++...
T Consensus       236 ~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~  296 (304)
T 2yd9_A          236 YVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPKAG  296 (304)
T ss_dssp             EEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC--------
T ss_pred             EEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcccc
Confidence            455543             2234666665  69999999999999999999999999988754

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=3.1e-32  Score=249.40  Aligned_cols=335  Identities=14%  Similarity=0.080  Sum_probs=203.8

Q ss_pred             CCceEEEEEeccCCCC---eeEEeeCCEEcc---------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPP---TVKWYKGNRELS---------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~---~v~W~k~g~~l~---------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++++|.|.+.+.|.+   .|.|||++..+.               ..++.+..  .++.++|+|.+++.+|+|.|+|.|
T Consensus        15 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~   94 (585)
T 2ocw_A           15 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGL   94 (585)
T ss_pred             CCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCEEEEEEc
Confidence            7899999999888654   799999985321               11222222  456678999999999999999999


Q ss_pred             EeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeeccc---CCceeeecccccccCCccccC-------CCCc
Q psy12422         61 TNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHTD-------DTGR  130 (356)
Q Consensus        61 ~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~~-------~~~~  130 (356)
                      .|..+..+..+.|.|...+..  ........+.+|+.+.|.|.+.   |.+.+.|++++..........       ...+
T Consensus        95 ~n~~~~~~~~~~l~V~~~p~~--~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r  172 (585)
T 2ocw_A           95 GINSRGLSFDVSLEVSQGPGL--LNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGR  172 (585)
T ss_pred             ccCCCCceEEEEEEEecCccc--cCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCc
Confidence            999888888888888776432  2223445678999999999987   345699999865432110000       0011


Q ss_pred             eEEEEeec-cccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEE
Q psy12422        131 TTTQMSTL-SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDL  209 (356)
Q Consensus       131 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l  209 (356)
                      ........ .+.+. +........+.+.|.|......+    .......|.+.    ..+      +..+.+.+|+.+.|
T Consensus       173 ~~~~~~~~~~~~~~-L~I~~v~~~D~G~Y~C~a~n~~g----~~~~~~~l~V~----~~~------p~~~~~~~G~~v~l  237 (585)
T 2ocw_A          173 IRLDIQGTGQLLFS-VVINQLRLSDAGQYLCQAGDDSN----SNKKNADLQVL----KPE------PELVYEDLRGSVTF  237 (585)
T ss_pred             EEEEeccCCCcEEE-EEEccCChhHCeEEEEEeccCCc----cccceEEEEEc----cCC------CceeEEcCCCcEEE
Confidence            11100000 01111 11222333344444444332211    12233444442    112      23456789999999


Q ss_pred             EEEEcCCCC---CeEEEE-ECCEE----cc--------CCCceeEEEe--CCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        210 SAVVKGDPE---PRVSWT-KNGQP----LN--------SSNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       210 ~C~~~g~p~---p~i~W~-~~g~~----~~--------~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      .|.+ +.|.   +.+.|+ ++|..    +.        ...++.+...  .+..+|.|.+++.+|+|.|+|.|.|..+..
T Consensus       238 ~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~  316 (585)
T 2ocw_A          238 HCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ  316 (585)
T ss_pred             EEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCcc
Confidence            9998 4443   678886 78732    11        1222222221  344589999999999999999999953332


Q ss_pred             E----EEEEEecCCCCccc------------------------------eeEEeC--Ce---------------------
Q psy12422        272 E----TKCKLTPLNSSNIL------------------------------DLKYKN--GV---------------------  294 (356)
Q Consensus       272 ~----~~~~l~p~~~~~~~------------------------------~~~~~~--~~---------------------  294 (356)
                      .    ..+.|.....+.+.                              ++.|.+  +.                     
T Consensus       317 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~  396 (585)
T 2ocw_A          317 EGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLS  396 (585)
T ss_pred             ccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEE
Confidence            1    44444421111110                              125654  11                     


Q ss_pred             ---------EEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCCCCCCcccCCCCceeEee
Q psy12422        295 ---------ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPSKESDKAPRFFAIV  355 (356)
Q Consensus       295 ---------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~  355 (356)
                               ..|.|.+++.+|+|.|+|.| |..|..+..+.|.|..+|.....+ +......+....+.|
T Consensus       397 ~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~-~~~~v~~G~~v~L~C  464 (585)
T 2ocw_A          397 LLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVP-GNVTAVLGETLKVPC  464 (585)
T ss_pred             EeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccC-CceeEecCCcEEEEE
Confidence                     23999999999999999999 999999999999998865544443 333333444445444

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.4e-34  Score=255.03  Aligned_cols=292  Identities=14%  Similarity=0.185  Sum_probs=175.8

Q ss_pred             CCceEEEEEeccCCCC---eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE--------E
Q psy12422          1 MQNVIKVKVGSTKPPP---TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE--------T   69 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~---~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~--------~   69 (356)
                      |+++.|.|.+.|.|++   .|+|||+|+++....+.  .......|.|.+++.+|+|.|+|.|.|..|...        .
T Consensus       101 G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~  178 (450)
T 1z7z_I          101 GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA  178 (450)
T ss_dssp             TSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC--TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECC
T ss_pred             CCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc--ccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccC
Confidence            7899999999998888   89999999988643211  123345899999999999999999999876432        2


Q ss_pred             EEEEEEeccccchhhhhhcccccccCccceeeeccc---C--CceeeecccccccCCccccCCCCceEEE----Eeeccc
Q psy12422         70 NCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---P--APAIITTRQEIKSSYSSHTDDTGRTTTQ----MSTLSS  140 (356)
Q Consensus        70 ~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p--~p~i~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  140 (356)
                      ...+.|...+..++.. .....+.+|+.+.|.|.+.   |  .+.+.|++++..+........+......    ...+.|
T Consensus       179 ~~~l~v~~~~~~~p~~-~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~G  257 (450)
T 1z7z_I          179 PYQLQTFVLPATPPQL-VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEG  257 (450)
T ss_dssp             CEECEECCCCSSCCEE-ECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCEEEEETTEEEEEEEEECCGGGCE
T ss_pred             ccceeeeccCCCCCEe-cCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCceEEecCCceeEEEEEEeEhhhCC
Confidence            3444554331111111 1125678999999999987   4  5679999988766542111111111110    123334


Q ss_pred             --cccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC
Q psy12422        141 --NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE  218 (356)
Q Consensus       141 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~  218 (356)
                        .|.|...+..                +    .......+.+..   ..+|.+...  ...+.+|+.++|.|.+.  |.
T Consensus       258 ~~~Y~C~a~n~~----------------g----~~~~~~~l~V~~---~~~p~i~~~--~~~v~~G~~v~l~C~~~--p~  310 (450)
T 1z7z_I          258 TQRLTCAVILGN----------------Q----SQETLQTVTIYS---FPAPNVILT--KPEVSEGTEVTVKCEAH--PR  310 (450)
T ss_dssp             EEEEEEEEEETT----------------E----EEEEEEEEEEEC---CCCCEEEES--CSEEETTCEEEEEEEC-----
T ss_pred             cEEEEEEEccCC----------------c----cEEEEEEEEEec---CCCCeEecC--CeeEeCCCcEEEEEecC--CC
Confidence              4444432221                1    111122233311   234555433  45899999999999998  89


Q ss_pred             CeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC-c---eEEEEEEe----cCCC-----Ccc
Q psy12422        219 PRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG-T---AETKCKLT----PLNS-----SNI  285 (356)
Q Consensus       219 p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-~---~~~~~~l~----p~~~-----~~~  285 (356)
                      |.++|  +|..+...        +....|.|.+++.+|+|.|+|.|.|..+ .   ....+.|.    |...     ..+
T Consensus       311 p~i~W--~g~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~  380 (450)
T 1z7z_I          311 AKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW  380 (450)
T ss_dssp             -----------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEE
T ss_pred             CEeEE--CCEEcCCC--------CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCce
Confidence            99999  77766221        1223799999999999999999997666 2   22444444    2111     100


Q ss_pred             c-------------------eeEEeCCeEEE----EEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy12422        286 L-------------------DLKYKNGVASL----QIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST  332 (356)
Q Consensus       286 ~-------------------~~~~~~~~~~L----~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  332 (356)
                      .                   .+.|.++...+    .+.+++.+|+|.|+|.|.|..|..+..+.|.|+++
T Consensus       381 ~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  450 (450)
T 1z7z_I          381 TWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  450 (450)
T ss_dssp             EEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             eEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCCeEeEehhhCeEEEEEEEeCCCceeEEEEEEEEcC
Confidence            0                   45555432100    01168889999999999999999999999999865

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=4.3e-32  Score=240.56  Aligned_cols=310  Identities=18%  Similarity=0.205  Sum_probs=202.4

Q ss_pred             CCceEEEEEeccCCCCee-----EEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTV-----KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v-----~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |++++|.|.+.| |.|.+     .|+|++..+....        ...|.|.+++. |+| |+|.|.+..+..+..+.|.|
T Consensus        14 G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~~--------~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V   82 (450)
T 1z7z_I           14 GGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGNN--------RKVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTV   82 (450)
T ss_dssp             TEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTTT--------EEEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEE
T ss_pred             CCcEEEEEEccC-CCcccccccceeeecceEecCCC--------ceEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEE
Confidence            789999999999 89998     9999887554322        23799999987 999 99999888777888888888


Q ss_pred             eccccchhhhhhcccccccCccceeeeccc--CCc---eeeecccccccCCccccCCCCceEEE----Eeeccccccccc
Q psy12422         76 ESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAP---AIITTRQEIKSSYSSHTDDTGRTTTQ----MSTLSSNYSSST  146 (356)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p---~i~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  146 (356)
                      ..++.... .......+.+|+.+.|.|.+.  |.|   .+.|++++..+...............    ...+.+.|.|.+
T Consensus        83 ~~~P~~~~-~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  161 (450)
T 1z7z_I           83 YWTPERVE-LAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRT  161 (450)
T ss_dssp             EBCCSEEE-ECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             EeCCCcce-ecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCceEEEEE
Confidence            86443321 122335578999999999987  555   78999987765433211111111111    223356666665


Q ss_pred             cccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCC-C--CCeEEE
Q psy12422        147 NNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-P--EPRVSW  223 (356)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p--~p~i~W  223 (356)
                      .+.........            ....+....+.+... ...+|.+...   ..+.+|+.+.|.|.+.|. |  .+.+.|
T Consensus       162 ~n~~g~~~~~~------------~~~~s~~~~l~v~~~-~~~~p~~~~~---~~v~~G~~v~l~C~~~g~~P~~~~~~~W  225 (450)
T 1z7z_I          162 ELDLRPQGLEL------------FENTSAPYQLQTFVL-PATPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHL  225 (450)
T ss_dssp             EEECGGGTSCE------------EEEECCCEECEECCC-CSSCCEEECC---SEEETTSEEEEEEEEESCTTGGGCEEEE
T ss_pred             EcccCCCCceE------------EeeccCccceeeecc-CCCCCEecCc---eeEEeCCcEEEEEEeeCCCCCCceEEEE
Confidence            54432221100            001112222222111 1234444322   578999999999999998 7  688999


Q ss_pred             EECCEEccCCCceeEEEeCCEEEEE-EccCCCCCCe--EEEEEEEcCCCceEEEEEEecCC--CCccc------------
Q psy12422        224 TKNGQPLNSSNILDLKYKNGVASLQ-IQEVFPEDEG--VYVCTATNSLGTAETKCKLTPLN--SSNIL------------  286 (356)
Q Consensus       224 ~~~g~~~~~~~~~~~~~~~~~~~L~-i~~v~~~d~G--~Y~C~a~n~~g~~~~~~~l~p~~--~~~~~------------  286 (356)
                      +++|..+..  .  .........+. ..+++.+|+|  .|+|.|.|..|.......+....  .+.+.            
T Consensus       226 ~~~~~~~~~--~--~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v  301 (450)
T 1z7z_I          226 ALGDQRLNP--T--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEV  301 (450)
T ss_dssp             EETTEECCC--E--EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEE
T ss_pred             eCCCEeCCc--e--EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcE
Confidence            999998865  2  23333322222 2278999999  99999999999887776665322  12211            


Q ss_pred             ----------eeEEe-------CCeEEEEEecCCCCCCeEEEEEEEcCCc----ceEEEEEEEEEecCCCCCCCCCC
Q psy12422        287 ----------DLKYK-------NGVASLQIQEVFPEDEGVYVCTATNSLG----TAETKCKLTVRSTPAANLGKSPS  342 (356)
Q Consensus       287 ----------~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g----~~~~~~~l~V~~~p~~~~~~~~~  342 (356)
                                .+.|.       .....|.|.++..+|+|.|+|.|.|..|    .....+.|.|.++|.+...+.|.
T Consensus       302 ~l~C~~~p~p~i~W~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~  378 (450)
T 1z7z_I          302 TVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPG  378 (450)
T ss_dssp             EEEEEC----------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCS
T ss_pred             EEEEecCCCCEeEECCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCC
Confidence                      23441       1234699999999999999999997665    34478899999999887765433

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=6e-32  Score=225.74  Aligned_cols=220  Identities=22%  Similarity=0.343  Sum_probs=160.5

Q ss_pred             CCceEEEEEeccCC-CCeeEEee-CCEEcccC--CeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCce-eEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKP-PPTVKWYK-GNRELSKR--DYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGT-DETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p-~~~v~W~k-~g~~l~~~--~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~   74 (356)
                      |+++.|.|.+.+.| .+.|+|+| ||..+...  ++... ..+....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.
T Consensus        17 G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~   96 (291)
T 1qz1_A           17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK   96 (291)
T ss_dssp             TCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEE
Confidence            78999999999887 68999999 88888643  22222 2345679999999999999999999998754 34455555


Q ss_pred             EeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcc
Q psy12422         75 VESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSK  154 (356)
Q Consensus        75 v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (356)
                      |..                                                                             
T Consensus        97 v~~-----------------------------------------------------------------------------   99 (291)
T 1qz1_A           97 IFQ-----------------------------------------------------------------------------   99 (291)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             eec-----------------------------------------------------------------------------
Confidence            532                                                                             


Q ss_pred             ceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC
Q psy12422        155 KITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN  234 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~  234 (356)
                                                        +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....
T Consensus       100 ----------------------------------~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~  145 (291)
T 1qz1_A          100 ----------------------------------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK  145 (291)
T ss_dssp             ----------------------------------CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTC
T ss_pred             ----------------------------------cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCC
Confidence                                              1223333345578899999999999999999999999998876443


Q ss_pred             ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE--EEEEEe----cCC----CC-ccc-----------------
Q psy12422        235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE--TKCKLT----PLN----SS-NIL-----------------  286 (356)
Q Consensus       235 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~----p~~----~~-~~~-----------------  286 (356)
                      ........ ...|.|.+++.+|+|.|+|.|.|..+...  ..+.+.    |..    .+ ...                 
T Consensus       146 ~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p  224 (291)
T 1qz1_A          146 DVRFIVLS-NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP  224 (291)
T ss_dssp             CTTEEECT-TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEES
T ss_pred             CceEEEcc-CCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeC
Confidence            22222222 23799999999999999999999875432  222222    110    00 000                 


Q ss_pred             --eeEEeC-------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy12422        287 --DLKYKN-------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST  332 (356)
Q Consensus       287 --~~~~~~-------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  332 (356)
                        .+.|..                   ....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.++
T Consensus       225 ~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~k  291 (291)
T 1qz1_A          225 EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK  291 (291)
T ss_dssp             CCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEcC
Confidence              344432                   2357999999999999999999999999999999999753

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=1.1e-30  Score=227.26  Aligned_cols=222  Identities=22%  Similarity=0.306  Sum_probs=171.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEccc------CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRELSK------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV   72 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l~~------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   72 (356)
                      |+++.|.|.+.|.|.|.|+|+|+  |..+..      .++.+....+...|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus        15 G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   94 (389)
T 2jll_A           15 NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY   94 (389)
T ss_dssp             TSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEE
Confidence            78999999999999999999999  988864      2344444456679999999999999999999999999888888


Q ss_pred             EEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCC
Q psy12422         73 VIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSP  152 (356)
Q Consensus        73 l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (356)
                      |.|..++                                                                         
T Consensus        95 l~V~~~P-------------------------------------------------------------------------  101 (389)
T 2jll_A           95 LDIEYAP-------------------------------------------------------------------------  101 (389)
T ss_dssp             EEEEEEE-------------------------------------------------------------------------
T ss_pred             EEEEeCC-------------------------------------------------------------------------
Confidence            8886431                                                                         


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS  232 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~  232 (356)
                                                            .+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+..
T Consensus       102 --------------------------------------~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~  143 (389)
T 2jll_A          102 --------------------------------------KFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPA  143 (389)
T ss_dssp             --------------------------------------EECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSC
T ss_pred             --------------------------------------EEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCc
Confidence                                                  111112234577899999999999999999999999999876


Q ss_pred             CC--ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCC---CC-ccc--------------------
Q psy12422        233 SN--ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLN---SS-NIL--------------------  286 (356)
Q Consensus       233 ~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~---~~-~~~--------------------  286 (356)
                      ..  ++.....+....|.|.+++.+|+|.|+|.|.|..|.....+.+....   .+ .+.                    
T Consensus       144 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~  223 (389)
T 2jll_A          144 KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHG  223 (389)
T ss_dssp             TTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCT
T ss_pred             ccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCC
Confidence            54  44445555667899999999999999999999999887776665211   11 110                    


Q ss_pred             -------eeEEeC-------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecC
Q psy12422        287 -------DLKYKN-------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP  333 (356)
Q Consensus       287 -------~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  333 (356)
                             .+.|..             ....|.|.++...|.|.|+|.|.|..|....+..+.+.-.+
T Consensus       224 g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~  290 (389)
T 2jll_A          224 GVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLP  290 (389)
T ss_dssp             TSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             CcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecC
Confidence                   112211             22579999999999999999999999987655555555433

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=3.6e-35  Score=277.31  Aligned_cols=306  Identities=18%  Similarity=0.273  Sum_probs=0.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE--EEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE--TNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~--~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.+.|+|+|+|..+.... .+.   +...|.|.+++.+|+|.|+|.|.|..|...  ..+.|.|..+
T Consensus       345 G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~-~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~  420 (772)
T 3v2a_R          345 GERVRIPAKYLGYPPPEIKWYKNGIPLESNH-TIK---AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVP  420 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEEEEeeeCCCeEEEEECCEeCCCCc-eEc---cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecC
Confidence            6889999999999999999999999887532 111   334899999999999999999999988664  4456666654


Q ss_pred             ccchhhhhh-cccccccCccceeeeccc--CCce-eeecccccccCCccc------------------------------
Q psy12422         79 EESKEQQEL-AHNFLYSGDRKYIEKHIR--PAPA-IITTRQEIKSSYSSH------------------------------  124 (356)
Q Consensus        79 ~~~~~~~~~-~~~~~~~g~~~~l~c~~~--p~p~-i~w~~~~~~~~~~~~------------------------------  124 (356)
                      +........ +...+.+|+.+.|.|.+.  |.|. +.|++++........                              
T Consensus       421 P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~  500 (772)
T 3v2a_R          421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN  500 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEe
Confidence            433222111 223478999999999987  6776 999986322100000                              


Q ss_pred             --cC---CC-----CceEEEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecc
Q psy12422        125 --TD---DT-----GRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFAN  194 (356)
Q Consensus       125 --~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  194 (356)
                        ..   ..     .........+.+.|.|.+.+..+                    .......+.+     ..+|.+..
T Consensus       501 ~~~~~~~~~~~~~~~~L~i~~~~d~G~Y~C~a~N~~g--------------------~~~~~~~l~V-----~~~p~i~~  555 (772)
T 3v2a_R          501 KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG--------------------RGERVISFHV-----TRGPEITL  555 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccceeeccCcceEEEEEEEeecccCeEEEEEEEcccc--------------------ccceeEEEEE-----ECCceeec
Confidence              00   00     00000001223344444322211                    1112233333     23555554


Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE--------------------EEeCCEEEEEEccCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL--------------------KYKNGVASLQIQEVFP  254 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~--------------------~~~~~~~~L~i~~v~~  254 (356)
                      .+. ..+.+|+++.|.|.+.+.|.+.+.|+++|..+........                    ........|.|.+++.
T Consensus       556 ~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  634 (772)
T 3v2a_R          556 QPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASL  634 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCc
Confidence            443 3578999999999999999999999998876543221111                    1111234599999999


Q ss_pred             CCCeEEEEEEEcCCCceE----EEEEEecCCCCccc--------------------------eeEEeC------------
Q psy12422        255 EDEGVYVCTATNSLGTAE----TKCKLTPLNSSNIL--------------------------DLKYKN------------  292 (356)
Q Consensus       255 ~d~G~Y~C~a~n~~g~~~----~~~~l~p~~~~~~~--------------------------~~~~~~------------  292 (356)
                      +|+|.|+|.|.|..+...    ..+.+....+|.+.                          .+.|.+            
T Consensus       635 ~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~  714 (772)
T 3v2a_R          635 QDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV  714 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeE
Confidence            999999999999765432    22222211111111                          233322            


Q ss_pred             ---CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCC
Q psy12422        293 ---GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAAN  336 (356)
Q Consensus       293 ---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  336 (356)
                         +.+.|.|.+++.+|+|.|+|.|.|..|..++++.|.|+++|...
T Consensus       715 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~  761 (772)
T 3v2a_R          715 LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT  761 (772)
T ss_dssp             -----------------------------------------------
T ss_pred             EcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCcc
Confidence               25789999999999999999999999999999999999998754

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=2.6e-32  Score=230.76  Aligned_cols=256  Identities=21%  Similarity=0.316  Sum_probs=175.4

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.+. |.+.|+|+|+|..+..... ....++...|.|.+++.+|+|.|+|.+.|..|.....+.|.|...+
T Consensus        21 G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~   99 (317)
T 2y25_A           21 ECNVLLKCKVANIKKETHIVWYKDEREISVDEK-HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFK   99 (317)
T ss_dssp             TTEEEEEEEEESCCTTCEEEEEETTEEECCSCC------CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHH
T ss_pred             CCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCc-EEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecCc
Confidence            7899999999887 7899999999999875432 2233555799999999999999999999999987777666555432


Q ss_pred             cchhhhhhcccccccCccceeeeccc------------CCceeeecccccccCCccccC--CCCce--E---EEEeeccc
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIR------------PAPAIITTRQEIKSSYSSHTD--DTGRT--T---TQMSTLSS  140 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~------------p~p~i~w~~~~~~~~~~~~~~--~~~~~--~---~~~~~~~~  140 (356)
                      .  .........+.+|+.+.+.|...            |.+.+.|++++..+.......  .....  .   .....+.+
T Consensus       100 ~--~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  177 (317)
T 2y25_A          100 E--LMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKG  177 (317)
T ss_dssp             H--HHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCE
T ss_pred             c--ccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCe
Confidence            1  12222344567888888888764            577899999877664321110  00000  0   01223345


Q ss_pred             cccccccccCCCccceeeeeeccccCCCCCcccccceeeecC---------------CCCCCCCCeec-ccCCceeecCC
Q psy12422        141 NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMP---------------PDTAMTPPQFA-NKLTDKTIDDG  204 (356)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~p~~~-~~~~~~~v~~g  204 (356)
                      .|.|.+.+.....                    .....+.+.               ......+|.+. ..+....+.+|
T Consensus       178 ~Y~C~a~n~~g~~--------------------~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g  237 (317)
T 2y25_A          178 KYVMELFDGKTGH--------------------QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG  237 (317)
T ss_dssp             EEEEEEECSSCEE--------------------EEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETT
T ss_pred             eEEEEEEeCCceE--------------------EEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcC
Confidence            5555543322111                    111111100               00002233333 34566789999


Q ss_pred             CeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422        205 QCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       205 ~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      +.+.|.|.+.|+|.|.+.|+++|..+....++.+... +....|.|.+++.+|+|.|+|.|.|..|....++.|.+
T Consensus       238 ~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V  313 (317)
T 2y25_A          238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV  313 (317)
T ss_dssp             SBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            9999999999999999999999999987777666555 55679999999999999999999999999988888764

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=100.00  E-value=4.3e-31  Score=222.04  Aligned_cols=218  Identities=20%  Similarity=0.377  Sum_probs=171.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.+.|+|+|+|..+...  ++.+. ..++...|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus        19 G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (305)
T 2nzi_A           19 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV   98 (305)
T ss_dssp             TCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECE
T ss_pred             CCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEec
Confidence            789999999999999999999999998753  33332 456677999999999999999999999999888888888864


Q ss_pred             cccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcccee
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT  157 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      ++..                                                                            
T Consensus        99 ~p~~----------------------------------------------------------------------------  102 (305)
T 2nzi_A           99 PAKI----------------------------------------------------------------------------  102 (305)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             CCcc----------------------------------------------------------------------------
Confidence            3210                                                                            


Q ss_pred             eeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee
Q psy12422        158 RRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~  237 (356)
                                                    ..|.....+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.
T Consensus       103 ------------------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~  152 (305)
T 2nzi_A          103 ------------------------------HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQ  152 (305)
T ss_dssp             ------------------------------CCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCE
T ss_pred             ------------------------------CCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEE
Confidence                                          01111222234567889999999999999999999999999888777777


Q ss_pred             EEEeCCEEEEEEcc-CCCCCCeEEEEEEEcCCCceEEEEEEecCCCCc----c---------ceeEEe------------
Q psy12422        238 LKYKNGVASLQIQE-VFPEDEGVYVCTATNSLGTAETKCKLTPLNSSN----I---------LDLKYK------------  291 (356)
Q Consensus       238 ~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~----~---------~~~~~~------------  291 (356)
                      +........|.|.+ ++.+|+|.|+|.|.|..|.....+.+.....|.    +         ..+.|.            
T Consensus       153 ~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~  232 (305)
T 2nzi_A          153 VIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITN  232 (305)
T ss_dssp             EEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEE
T ss_pred             EEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeE
Confidence            66666778999999 999999999999999999988877776221111    0         011111            


Q ss_pred             --------------C----CeEEEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy12422        292 --------------N----GVASLQIQEVFPEDEGVYVCTATNSLGTAETK  324 (356)
Q Consensus       292 --------------~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  324 (356)
                                    .    ....|.|.++...|.|.|+|.|.|..|....+
T Consensus       233 y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          233 YIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             EEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             EEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence                          1    23579999999999999999999999977653

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.98  E-value=2.8e-32  Score=241.01  Aligned_cols=302  Identities=13%  Similarity=0.156  Sum_probs=187.0

Q ss_pred             CCceEEEEEeccCCC----CeeEEeeC--CEEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPP----PTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~----~~v~W~k~--g~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++++|.|.+.+.|.    +.|.|||+  |..+             ...++.....++..+|+|.+++.+|+|.|+|.|.
T Consensus        16 G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   95 (438)
T 1qgc_4           16 GQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVATYYCQQS   95 (438)
T ss_dssp             TSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCCeeEEEEEe
Confidence            789999999988887    48999996  3322             1234444455667799999999999999999999


Q ss_pred             eCCcee-EEEEEEEEeccccchhhhh-hcccccccCccceeeeccc---CCc-eeeecccccccCCc-c---cc--CCCC
Q psy12422         62 NKHGTD-ETNCVVIVESEEESKEQQE-LAHNFLYSGDRKYIEKHIR---PAP-AIITTRQEIKSSYS-S---HT--DDTG  129 (356)
Q Consensus        62 n~~g~~-~~~~~l~v~~~~~~~~~~~-~~~~~~~~g~~~~l~c~~~---p~p-~i~w~~~~~~~~~~-~---~~--~~~~  129 (356)
                      |..+.. ...+.|.|......+.... .......+|+.+.|.|.+.   |.| .+.|++++..+... .   ..  ..++
T Consensus        96 n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~  175 (438)
T 1qgc_4           96 NEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDS  175 (438)
T ss_dssp             SSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTC
T ss_pred             cCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCC
Confidence            987643 3446677754322222111 1222345688999999985   666 79999987665433 0   00  1111


Q ss_pred             ce----EEE----EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceee
Q psy12422        130 RT----TTQ----MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTI  201 (356)
Q Consensus       130 ~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v  201 (356)
                      ..    ...    ...+.+.|.|.+.+.....                    .....+..     ..++.....+....+
T Consensus       176 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~--------------------~~~~~~~~-----~~~~~~~~~~~~~~v  230 (438)
T 1qgc_4          176 TYSMSSTLTLTKDEYERHNSYTCEATHKTSTS--------------------PIVKSFNR-----NECEVMLVESGGGLV  230 (438)
T ss_dssp             CEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS--------------------CEEEEEET-----TC-CCEEEEECCEEE
T ss_pred             cEEEEEEEEEeCcccCCCCeEEEEEEecccCC--------------------ceeccccc-----ccceeEEecCCceEE
Confidence            10    011    1223566666664432211                    11112221     111222233456779


Q ss_pred             cCCCeEEEEEEEcCCC--CCeEEEEEC--CEEcc-----------------CCCceeEEEe--CCEEEEEEccCCCCCCe
Q psy12422        202 DDGQCLDLSAVVKGDP--EPRVSWTKN--GQPLN-----------------SSNILDLKYK--NGVASLQIQEVFPEDEG  258 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~p--~p~i~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~L~i~~v~~~d~G  258 (356)
                      .+|+.+.|.|.+.|.|  .+.+.|+++  |..+.                 ...++....+  .+...|.|.+++.+|+|
T Consensus       231 ~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G  310 (438)
T 1qgc_4          231 KPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTA  310 (438)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCC
T ss_pred             ecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCE
Confidence            9999999999999998  678999996  43332                 1234444333  34578999999999999


Q ss_pred             EEEEEEEcCCC-----c--eEEEEEEe--cCCC----------------------------CccceeEEeCC--------
Q psy12422        259 VYVCTATNSLG-----T--AETKCKLT--PLNS----------------------------SNILDLKYKNG--------  293 (356)
Q Consensus       259 ~Y~C~a~n~~g-----~--~~~~~~l~--p~~~----------------------------~~~~~~~~~~~--------  293 (356)
                      .|+|.|.|..+     .  ....+.+.  +...                            |....+.|..+        
T Consensus       311 ~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~  390 (438)
T 1qgc_4          311 MYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT  390 (438)
T ss_dssp             EEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEE
T ss_pred             EEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceee
Confidence            99999998433     1  11122221  0000                            11113444331        


Q ss_pred             ------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy12422        294 ------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  328 (356)
Q Consensus       294 ------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  328 (356)
                                  .+.|+|.++..+| |.|+|.|.|..|.......|.
T Consensus       391 ~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~  436 (438)
T 1qgc_4          391 FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  436 (438)
T ss_dssp             CCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred             cCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence                        1258999999889 999999999999877666554

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.98  E-value=1.4e-32  Score=234.23  Aligned_cols=243  Identities=21%  Similarity=0.350  Sum_probs=110.9

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.+. |.+.|+|+|+|..+....+. ...  ..+|.|.+++.+|+|.|+|.|.|. |.....+.|.|...+
T Consensus        23 G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~-~~~--~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~   98 (334)
T 1ry7_B           23 GDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERV-LVG--PQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAP   98 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEeeCCCCCCCcceEEEECCeeCCCcccE-Eec--cceEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccC
Confidence            7899999999876 67899999999988654321 122  238999999999999999999998 777777777776542


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                      .......        +.                     .          ..                             
T Consensus        99 ~~~~~~~--------~~---------------------~----------~~-----------------------------  110 (334)
T 1ry7_B           99 SSGDDED--------GE---------------------D----------EA-----------------------------  110 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccc--------cc---------------------c----------cc-----------------------------
Confidence            2110000        00                     0          00                             


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecc----cCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCc
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFAN----KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI  235 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~  235 (356)
                                     ..  ...    ...+|.+..    ......+.+|+.+.|.|.+.|+|.|.+.|+++|..+.....
T Consensus       111 ---------------~~--~~~----~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~  169 (334)
T 1ry7_B          111 ---------------ED--TGV----DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR  169 (334)
T ss_dssp             -----------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSS
T ss_pred             ---------------cc--ccc----cCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccc
Confidence                           00  000    012232221    12346788999999999999999999999999988875543


Q ss_pred             e-eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCC----CCccc------------------------
Q psy12422        236 L-DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLN----SSNIL------------------------  286 (356)
Q Consensus       236 ~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~----~~~~~------------------------  286 (356)
                      . ..........|.|.+++.+|+|.|+|.|.|..|.....+.+....    .+.+.                        
T Consensus       170 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~  249 (334)
T 1ry7_B          170 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSD  249 (334)
T ss_dssp             TTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCS
T ss_pred             ccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecC
Confidence            2 112223345899999999999999999999999887776666221    11110                        


Q ss_pred             ---eeEEeC-----------C-------------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecC
Q psy12422        287 ---DLKYKN-----------G-------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP  333 (356)
Q Consensus       287 ---~~~~~~-----------~-------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  333 (356)
                         .+.|..           +                   ...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...|
T Consensus       250 p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  329 (334)
T 1ry7_B          250 AQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE  329 (334)
T ss_dssp             SCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSC
T ss_pred             CCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECC
Confidence               455532           0                   1279999999999999999999999999999999999887


Q ss_pred             CCC
Q psy12422        334 AAN  336 (356)
Q Consensus       334 ~~~  336 (356)
                      ...
T Consensus       330 ~~~  332 (334)
T 1ry7_B          330 EEL  332 (334)
T ss_dssp             CC-
T ss_pred             CCc
Confidence            653

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.98  E-value=6.3e-31  Score=219.51  Aligned_cols=259  Identities=20%  Similarity=0.324  Sum_probs=171.8

Q ss_pred             CCceEEEEEeccCCCCeeEEee-CCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK-GNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|. .+.|+| +|..+... ++.....+....|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|..
T Consensus        19 G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~   97 (291)
T 2wim_A           19 GESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ   97 (291)
T ss_dssp             TCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecC
Confidence            789999999999875 899999 78777643 4445555566799999999999999999999998876 3566777765


Q ss_pred             cccchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccc
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKK  155 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (356)
                      ++...  .......+.+|+.+.|.|.+.  |.|.+.|++++.........    +.. .  ...+.   .........+.
T Consensus        98 ~~~~~--~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~----~~~-~--~~~~~---L~i~~v~~~d~  165 (291)
T 2wim_A           98 KLTFR--EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN----RFA-M--LANNN---LQILNINKSDE  165 (291)
T ss_dssp             CCBCC--SCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCS----SEE-E--CTTSC---EEETTCCGGGC
T ss_pred             CcceE--eCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCc----eEE-E--ccCCC---EEEEecchhhC
Confidence            43221  122344578999999999987  67789999987655421110    000 0  00000   11111222223


Q ss_pred             eeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCC--ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC
Q psy12422        156 ITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLT--DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS  233 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~  233 (356)
                      +.|.|.........  .......+.+     ..+|.+.....  ...+.+|+.+.|.|.+.|+|.|.+.|+++|..+...
T Consensus       166 G~Y~C~~~n~~~~~--~~~~~~~~~v-----~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  238 (291)
T 2wim_A          166 GIYRCEGRVEARGE--IDFRDIIVIV-----NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN  238 (291)
T ss_dssp             EEEEEEEEETTTTE--EEEEEEEEEE-----EBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCT
T ss_pred             EEEEEEEEECCCCe--eEEeeEEEEe-----ccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCC
Confidence            33333322211111  1112222333     33454444332  456889999999999999999999999999999877


Q ss_pred             CceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCC
Q psy12422        234 NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLN  281 (356)
Q Consensus       234 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~  281 (356)
                      .++...  .....|.|.+++.+|+|.|+|.|.|..|....++.|....
T Consensus       239 ~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  284 (291)
T 2wim_A          239 EKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  284 (291)
T ss_dssp             TTEEEC--STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC--
T ss_pred             ccEEEc--CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEE
Confidence            655443  2335899999999999999999999999999999987543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.97  E-value=2.5e-31  Score=221.76  Aligned_cols=250  Identities=14%  Similarity=0.169  Sum_probs=163.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCC--eEEEEEeeCCCCCCeEEEEEEEeCCce---eEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDG--VVSMEIIDCKPEDSGEYKCVATNKHGT---DETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~a~n~~g~---~~~~~~l~v   75 (356)
                      |++++|.|.+.|.    |+|+|+|..+..  ......++  ...|.|.+++.+|+|.|+|.|.|..|.   ....+.|.|
T Consensus        15 G~~v~L~C~~~~~----v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v   88 (289)
T 3mjg_X           15 SSTFVLTCSGSAP----VVWERMSQEPPQ--EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV   88 (289)
T ss_dssp             TCCEEEEEEESSC----CEEEBTTBCCSE--EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEEC
T ss_pred             CCcEEEEEeccce----EEEECCCCCccc--ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEE
Confidence            7899999999874    999999998742  12223333  358999999999999999999998876   344556655


Q ss_pred             eccccchhhhh--hcccccccCccceeeeccc-CCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCC
Q psy12422         76 ESEEESKEQQE--LAHNFLYSGDRKYIEKHIR-PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSP  152 (356)
Q Consensus        76 ~~~~~~~~~~~--~~~~~~~~g~~~~l~c~~~-p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (356)
                      .++........  .....+.+|+.+.|.|.+. |.|.+.|++...........  ..........+.+.|.|.+.+..  
T Consensus        89 ~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~~~~--~~~~~~~~~~d~G~Y~C~a~n~~--  164 (289)
T 3mjg_X           89 PDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPY--DHQRGFSGIFEDRSYICKTTIGD--  164 (289)
T ss_dssp             CCTTCCBCCCCHHHHEEEESSCCCEEECCCBSCTTSCEEEEESSCCSCCCCCE--ETTTEEEECCCSSEEEEEEEETT--
T ss_pred             ECCCcCcccCCCCcceEEeecCCeEEEEeEcCCCCceEEEEeCCCCCccceee--cCCcCeeeeccCcEEEEEEEeCC--
Confidence            54322221111  1124578999999999998 67789998875332221111  11111223445566666653211  


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS  232 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~  232 (356)
                                       ....+....+.+..   ..+|.+...+....+.+|+++.|.|.+.|+|.|.+.|++++.....
T Consensus       165 -----------------~~~~s~~~~l~v~~---~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~  224 (289)
T 3mjg_X          165 -----------------REVDSDAYYVYRLQ---VSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGR  224 (289)
T ss_dssp             -----------------EEEECCCEEEEECC---CCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSC
T ss_pred             -----------------ceeeeeeEEEEecC---CCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCC
Confidence                             11111222333321   1456666666667899999999999999999999999987765433


Q ss_pred             CCceeEEE-----eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        233 SNILDLKY-----KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       233 ~~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      ........     ......|.|.+++.+|+|.|+|.|.|..|....++.|...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~  277 (289)
T 3mjg_X          225 LVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT  277 (289)
T ss_dssp             CCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             cccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEE
Confidence            22211111     1134689999999999999999999999999998888743

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=217.90  Aligned_cols=254  Identities=15%  Similarity=0.169  Sum_probs=169.1

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.. .+.|.+.|+|||+|.++... ++.+...++...|.|.+++.+|+|.|+|.|.|..|... ++.+.|...
T Consensus        16 g~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~~   94 (312)
T 2y23_A           16 DGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEEL   94 (312)
T ss_dssp             TCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECHHHH
T ss_pred             CCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEEeee
Confidence            6788898888 56899999999999999854 55556666777999999999999999999999888554 555555421


Q ss_pred             c-----------cchhhhhhcccccccCccceeeeccc---CCceeeecccccccCCccccC----C-CCce-E---EEE
Q psy12422         79 E-----------ESKEQQELAHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHTD----D-TGRT-T---TQM  135 (356)
Q Consensus        79 ~-----------~~~~~~~~~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~~----~-~~~~-~---~~~  135 (356)
                      .           +...........+.+|+.+.|.|.+.   |.+.+.|++++..+.......    . .... .   ...
T Consensus        95 ~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~  174 (312)
T 2y23_A           95 KRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQ  174 (312)
T ss_dssp             HHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCC
T ss_pred             eeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCC
Confidence            1           11111111255678999999999976   888899999877654321100    0 0000 0   001


Q ss_pred             eeccccccccccccCCCccceeeeeeccccCCCCCcccccceeee-------c-------CCCCCCCCCeecccCCceee
Q psy12422        136 STLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELI-------M-------PPDTAMTPPQFANKLTDKTI  201 (356)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-------~~~~~~~~p~~~~~~~~~~v  201 (356)
                      ..+.+.|.|...+...                    .......+.       +       .+.....+|.+.... ...+
T Consensus       175 ~~d~G~Y~C~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v  233 (312)
T 2y23_A          175 DEDEGTYTFQLQDGKA--------------------TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEV  233 (312)
T ss_dssp             GGGCEEEEEEEESSSC--------------------EEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEE
T ss_pred             cccCEeEEEEEEeCCc--------------------eEEEEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEE
Confidence            2233444444321100                    000000000       0       000002234444332 3678


Q ss_pred             cCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        202 DDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      .+|+.+.|.|.+.|.|+| .+.|+++|..+....++.+.  .+...|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus       234 ~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  309 (312)
T 2y23_A          234 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV  309 (312)
T ss_dssp             ETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEEC
T ss_pred             eCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEE
Confidence            999999999999999988 99999999998865554433  4457999999999999999999999999999998885

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=4.3e-30  Score=232.02  Aligned_cols=256  Identities=15%  Similarity=0.124  Sum_probs=153.6

Q ss_pred             CCceEEEEEeccCCCC--eeEEeeCCEEcccCCee---EEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCceeEEEE
Q psy12422          1 MQNVIKVKVGSTKPPP--TVKWYKGNRELSKRDYS---MSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTDETNC   71 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~~~~---~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   71 (356)
                      |+++.|.|.+.|.|++  .|+|+|||+++......   ....++.    ..|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus       129 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  208 (523)
T 2rcj_C          129 ANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  208 (523)
T ss_pred             CCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccce
Confidence            6789999999988764  89999999988654211   1123333    3699999999999999999999988776665


Q ss_pred             EEEEecc-ccchhhh-hhcccccccCccceeeeccc---CCc-eeeecccccccCCccc---cCCCCceEEEEeeccccc
Q psy12422         72 VVIVESE-EESKEQQ-ELAHNFLYSGDRKYIEKHIR---PAP-AIITTRQEIKSSYSSH---TDDTGRTTTQMSTLSSNY  142 (356)
Q Consensus        72 ~l~v~~~-~~~~~~~-~~~~~~~~~g~~~~l~c~~~---p~p-~i~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  142 (356)
                      .+.+... ...+... ..+...+.+|+.+.|.|.+.   |.| .+.|++++........   ....+... ..       
T Consensus       209 ~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~-~~-------  280 (523)
T 2rcj_C          209 APTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYS-LS-------  280 (523)
T ss_pred             eeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEE-EE-------
Confidence            5433211 1111111 11223457899999999985   556 7999998765422110   00111000 00       


Q ss_pred             cccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCee-cccCCcee-ecCCCeEEEEEEEcCCCC--
Q psy12422        143 SSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQF-ANKLTDKT-IDDGQCLDLSAVVKGDPE--  218 (356)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~-v~~g~~~~l~C~~~g~p~--  218 (356)
                      ..+........+ +.|.|.+.+..+..    .....+.+     ...|.+ ...+.... +.+|+.+.|.|.+.|+|+  
T Consensus       281 s~L~i~~~~~~d-G~Y~C~a~n~~g~~----~~~~~l~v-----~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~  350 (523)
T 2rcj_C          281 SVVTVPSSSLGT-QTYICNVNHKPSNT----KVDKRVEP-----LSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHED  350 (523)
T ss_pred             EEEEechhhcCC-ceEEEEEEeCCCCc----ceEEecCC-----CcCceEEecCCCchhhcccCCceEEEEEEecccCCC
Confidence            000111111122 33333332222211    11222222     122333 33333333 788999999999998764  


Q ss_pred             --CeEEEEECCEEccCCCceeE-EEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        219 --PRVSWTKNGQPLNSSNILDL-KYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       219 --p~i~W~~~g~~~~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                        +.|+|+|+|..+........ ...++    .+.|.|.++..+|+|.|+|.|.|..+.....
T Consensus       351 ~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  413 (523)
T 2rcj_C          351 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIE  413 (523)
T ss_pred             CceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCcee
Confidence              48999999998875542211 11111    2469999999999999999999987765433

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=2.1e-30  Score=216.25  Aligned_cols=246  Identities=13%  Similarity=0.117  Sum_probs=165.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE   80 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~   80 (356)
                      |+++.|.|.+.|    .|+|+|+|..+    +..... + ..|.|.+++.+|+|.|+|.|.|  |. ...+.|.|.+++.
T Consensus        27 G~~v~l~C~~~~----~i~W~~~~~~~----~~~~~~-~-~~L~i~~~~~~d~G~Y~C~~~n--g~-~~~~~l~V~~~~~   93 (290)
T 2o26_X           27 GDTLSLTCIDPD----FVRWTFKTYFN----EMVENK-K-NEWIQEKAEATRTGTYTCSNSN--GL-TSSIYVFVRDPAK   93 (290)
T ss_dssp             TSCEEEEEECTT----EEEEEEECSSS----CEEEEC-S-SEEEETTCCGGGCEEEEEEESS--SC-EEEEEEEEECSSC
T ss_pred             CCcEEEEECCCC----cEEEecCCcce----eeecCC-C-ceEEEeccCHHhCeEEEEEeeC--Cc-cEEEEEEEeCCCc
Confidence            789999999987    89999999877    112222 2 4899999999999999999999  44 6778888886554


Q ss_pred             chhhhhhcccccccCccceeeeccc-CC-ceeeec-ccccccCCcccc--CCCCceE--EEEeeccc-cccccccccCCC
Q psy12422         81 SKEQQELAHNFLYSGDRKYIEKHIR-PA-PAIITT-RQEIKSSYSSHT--DDTGRTT--TQMSTLSS-NYSSSTNNATSP  152 (356)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~c~~~-p~-p~i~w~-~~~~~~~~~~~~--~~~~~~~--~~~~~~~~-~~~~~~~~~~~~  152 (356)
                      ..  .......+.+|+.+.|.|.+. |. +.+.|+ +++..+......  .......  .....+.+ .|.|.+.+.   
T Consensus        94 ~~--~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~---  168 (290)
T 2o26_X           94 LF--LVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRD---  168 (290)
T ss_dssp             CB--CCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEET---
T ss_pred             cc--ccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEEC---
Confidence            43  334445677999999999988 66 779995 444333221110  0000000  01223334 455544321   


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEc-
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPL-  230 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~-  230 (356)
                                      .....+....+.+.. ....+|.+...+....+.+|+.+.|.|.+.|.|.|. +.|+++|..+ 
T Consensus       169 ----------------~~~~~s~~~~l~V~~-~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~  231 (290)
T 2o26_X          169 ----------------GTWLHSDKFTLKVRE-AIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQ  231 (290)
T ss_dssp             ----------------TEEEECCCEEEEEEC-CCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEE
T ss_pred             ----------------CceEEeEEEEEEEEe-CCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCc
Confidence                            111112223333311 114678887777777899999999999999999997 9999988763 


Q ss_pred             ---cCCCceeEE---EeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCC
Q psy12422        231 ---NSSNILDLK---YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLN  281 (356)
Q Consensus       231 ---~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~  281 (356)
                         .........   .......|.|.+++.+|+|.|+|.|.|..|.....+.|.+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          232 HIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             ECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             cceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence               322222111   112346899999999999999999999999999888887543

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.97  E-value=4.2e-32  Score=256.41  Aligned_cols=315  Identities=18%  Similarity=0.236  Sum_probs=58.0

Q ss_pred             CCceEEEEEecc--CCCCeeEEeeCCEEcccCCeeE---------EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGST--KPPPTVKWYKGNRELSKRDYSM---------SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~~~~~---------~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |+++.|.|.+.+  .|.+.+.|+++|..+.......         ........|.|.+++.+|+|.|+|.+.|..+..+.
T Consensus       239 G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~  318 (772)
T 3v2a_R          239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN  318 (772)
T ss_dssp             TCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEE
T ss_pred             CCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeE
Confidence            789999999987  5567899999998765432111         11123458999999999999999999999998888


Q ss_pred             EEEEEEeccccchhhh-hhcccccccCccceeeeccc--CCceeeecccccccCCccccC--CCCceEEEEeeccccccc
Q psy12422         70 NCVVIVESEEESKEQQ-ELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTD--DTGRTTTQMSTLSSNYSS  144 (356)
Q Consensus        70 ~~~l~v~~~~~~~~~~-~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  144 (356)
                      .+.|.|...+...... ......+.+|+.+.|.|.+.  |.|.+.|++++..+.......  ...........+.+.|.|
T Consensus       319 ~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C  398 (772)
T 3v2a_R          319 STFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTV  398 (772)
T ss_dssp             EEEEEEECCCC---------------------------------------------------------------------
T ss_pred             EEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceEEE
Confidence            8999998765433222 12345678999999999987  778899998876654321111  111111223445566666


Q ss_pred             cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC---CceeecCCCeEEEEEEEcCCCCCe-
Q psy12422        145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL---TDKTIDDGQCLDLSAVVKGDPEPR-  220 (356)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~v~~g~~~~l~C~~~g~p~p~-  220 (356)
                      .+.+.....                  ..+....+.+     ..+|.+....   ....+.+|+.+.|.|.+.|.|.|. 
T Consensus       399 ~a~n~~g~~------------------~~s~~~~l~v-----~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~  455 (772)
T 3v2a_R          399 ILTNPISKE------------------KQSHVVSLVV-----YVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHH  455 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCcCe------------------EEEEEEEEEE-----ecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcE
Confidence            653322111                  1112223333     3445443221   112478999999999999999997 


Q ss_pred             EEEEECCEE--------------------------------ccCCC-ceeEEE--eCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        221 VSWTKNGQP--------------------------------LNSSN-ILDLKY--KNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       221 i~W~~~g~~--------------------------------~~~~~-~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      +.|++++..                                +.... ......  ......|.|.++  +|+|.|+|.|.
T Consensus       456 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~  533 (772)
T 3v2a_R          456 IHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAV  533 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEE
Confidence            999997432                                11000 000000  111257888876  79999999999


Q ss_pred             cCCCceEEEEEEecCCCCccc-------------------------eeEEeCC---------------------------
Q psy12422        266 NSLGTAETKCKLTPLNSSNIL-------------------------DLKYKNG---------------------------  293 (356)
Q Consensus       266 n~~g~~~~~~~l~p~~~~~~~-------------------------~~~~~~~---------------------------  293 (356)
                      |..|.....+.+.+...+.+.                         .+.|.++                           
T Consensus       534 N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~  613 (772)
T 3v2a_R          534 NKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLN  613 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccceeEEEEEECCceeeccCCcccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeecc
Confidence            999987776666522111110                         2333221                           


Q ss_pred             ----------eEEEEEecCCCCCCeEEEEEEEcCCcceE--EEEEEEE--EecCCCCCCCC
Q psy12422        294 ----------VASLQIQEVFPEDEGVYVCTATNSLGTAE--TKCKLTV--RSTPAANLGKS  340 (356)
Q Consensus       294 ----------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~V--~~~p~~~~~~~  340 (356)
                                ...|.|.+++.+|+|.|+|.|.|..|...  ....|.|  ..+|.+...+.
T Consensus       614 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~  674 (772)
T 3v2a_R          614 ATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLE  674 (772)
T ss_dssp             -------------------------------------------------------------
T ss_pred             ceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCC
Confidence                      12399999999999999999999655432  2344555  66777655443

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=1.4e-31  Score=228.47  Aligned_cols=264  Identities=17%  Similarity=0.161  Sum_probs=181.6

Q ss_pred             CCceEEEEEec-------cCCCCeeEEeeCCEEc--ccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGS-------TKPPPTVKWYKGNREL--SKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~-------g~p~~~v~W~k~g~~l--~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |+++.|.|.+.       +.|.+.|+|+|+|..+  ... ...+...++  +|.|.+++.+|+|.|+|.+.|..|.....
T Consensus        33 G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~  110 (339)
T 3o4o_C           33 GEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDSGTYVCTTRNASYCDKMS  110 (339)
T ss_dssp             TBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTCCEEEECCEEETTEEEEEE
T ss_pred             CccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCcccCEEEEEEEECCcceEEEE
Confidence            78999999997       8999999999999884  333 333444555  79999999999999999999999988899


Q ss_pred             EEEEEeccccchhhhhhcccccccCccceeeec-----cc--CCceeeecccccccCCcccc--CCCCceEEEEeecccc
Q psy12422         71 CVVIVESEEESKEQQELAHNFLYSGDRKYIEKH-----IR--PAPAIITTRQEIKSSYSSHT--DDTGRTTTQMSTLSSN  141 (356)
Q Consensus        71 ~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~-----~~--p~p~i~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  141 (356)
                      +.|.|...+............+.+|+.+.|.|.     ..  |.+.+.|++++..+......  ......          
T Consensus       111 ~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~----------  180 (339)
T 3o4o_C          111 IELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT----------  180 (339)
T ss_dssp             EEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSS----------
T ss_pred             EEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcc----------
Confidence            999998776554334444457889999999999     44  67889999987665432111  000000          


Q ss_pred             ccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE---cCCC-
Q psy12422        142 YSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV---KGDP-  217 (356)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~---~g~p-  217 (356)
                        .+........+.+.|.|......+...........+.+.......+|.+...+....+.+|+.+.|.|.+   .|+| 
T Consensus       181 --~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~  258 (339)
T 3o4o_C          181 --HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPL  258 (339)
T ss_dssp             --EEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCS
T ss_pred             --eEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCC
Confidence              0111112223333344433333222222233344444433333456777777777889999999999999   9999 


Q ss_pred             CCeEEEEECCEEccCC---------CceeEEEeCC---EEEEEEccCCCCCC-eEEEEEEEcCCCceEEEEEEe
Q psy12422        218 EPRVSWTKNGQPLNSS---------NILDLKYKNG---VASLQIQEVFPEDE-GVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       218 ~p~i~W~~~g~~~~~~---------~~~~~~~~~~---~~~L~i~~v~~~d~-G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ++.+.|+++|..+...         ........+.   .+.|.|.+++.+|+ |.|+|.|.|..|...+.+.+.
T Consensus       259 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~  332 (339)
T 3o4o_C          259 TTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK  332 (339)
T ss_dssp             SCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCC
T ss_pred             CceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhh
Confidence            8889999999876432         1111111121   12799999999997 999999999999888766654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.97  E-value=3.5e-31  Score=231.37  Aligned_cols=252  Identities=25%  Similarity=0.391  Sum_probs=178.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc---CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~---~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.+.++|+|+|..+..   ........++  .|.|.+++.+|+|.|+|.+.|..+... ..+.+.|.
T Consensus       136 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~  213 (403)
T 3laf_A          136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL  213 (403)
T ss_dssp             TSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTS--CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEE
T ss_pred             CCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCc--eEEEcccccccCEEEEEEEEcCCCceeccceeEEEe
Confidence            78999999999999999999999988843   2222333344  799999999999999999999877643 45667776


Q ss_pred             ccccchhh----hhhcccccccCccceeeeccc--CCceeeecccccccCCccccC--CCCceEE---EEeecccccccc
Q psy12422         77 SEEESKEQ----QELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTD--DTGRTTT---QMSTLSSNYSSS  145 (356)
Q Consensus        77 ~~~~~~~~----~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~  145 (356)
                      ..+.....    .......+.+|+.+.|.|.+.  |.|.+.|++++..+.......  .......   ....+.|.|.|.
T Consensus       214 ~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  293 (403)
T 3laf_A          214 SDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCV  293 (403)
T ss_dssp             CCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEE
T ss_pred             cCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEE
Confidence            54432211    112234567999999999987  788899999876553221110  0000000   112233444444


Q ss_pred             ccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEE
Q psy12422        146 TNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK  225 (356)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~  225 (356)
                      +.                ...    ........+.+     ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++
T Consensus       294 a~----------------n~~----g~~~~~~~l~V-----~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~  348 (403)
T 3laf_A          294 VT----------------YKN----ENISASAELTV-----LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK  348 (403)
T ss_dssp             EE----------------ETT----EEEEEEEEEEE-----EEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEE
T ss_pred             EE----------------cCC----CceEEEEEEEE-----ECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEE
Confidence            32                211    11223334444     456777777778889999999999999999999999999


Q ss_pred             CCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCC
Q psy12422        226 NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNS  282 (356)
Q Consensus       226 ~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~  282 (356)
                      +|..+......... .+  ..|.|.+++.+|+|.|+|.|.|..|....++.|.+..+
T Consensus       349 ~g~~~~~~~~~~~~-~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          349 NGDVVIPSDYFQIV-GG--SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             TTEECCCSSSEEEE-TT--TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             CCEECCCCCcEEEe-cC--ccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence            99998776655433 22  37999999999999999999999999999998875543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.97  E-value=2.4e-30  Score=224.42  Aligned_cols=249  Identities=19%  Similarity=0.299  Sum_probs=170.3

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE---EEEEE
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN---CVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~---~~l~v   75 (356)
                      |+++.|.|.+ .+.|.+.+.|++++.++........ ..++  .|.|.+++.+|+|.|+|.|.|..+.....   ..+.+
T Consensus       117 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v  194 (384)
T 3kld_A          117 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLIL  194 (384)
T ss_dssp             TCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTC--CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEE
T ss_pred             CCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCC--cEEEeecCHHHCceEEEEEecccccceeeCCceEEEE
Confidence            6889999976 3567789999999998865433332 2333  79999999999999999999987765321   22222


Q ss_pred             ecc------ccchhhhhhcccccccCccceeeeccc--CCceeeecccccccCCcccc-CCCCceE---EEEeecccccc
Q psy12422         76 ESE------EESKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHT-DDTGRTT---TQMSTLSSNYS  143 (356)
Q Consensus        76 ~~~------~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~  143 (356)
                      ...      .+...........+.+|+.+.|.|.+.  |.|.+.|++++......... .......   .....+.|.|.
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  274 (384)
T 3kld_A          195 RNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYE  274 (384)
T ss_dssp             EEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEE
T ss_pred             ccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEE
Confidence            211      000001111233467899999999987  88899999865533222111 1111111   11233445566


Q ss_pred             ccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEE
Q psy12422        144 SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSW  223 (356)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W  223 (356)
                      |.+.+..+.                    ......+.+     ..+|.+...+.+..+.+|+++.|.|.+.|.|.|.|.|
T Consensus       275 C~a~N~~G~--------------------~~~~~~l~v-----~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W  329 (384)
T 3kld_A          275 CVAENSRGK--------------------NVAKGQLTF-----YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW  329 (384)
T ss_dssp             EEEEETTEE--------------------EEEEEEEEE-----EEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEE
T ss_pred             EEEEcCCCe--------------------EEEEEEEEE-----ecCCccccCCCceEecCCCCEEEEeECCccCCCeEEE
Confidence            555433221                    112233333     4457777777788899999999999999999999999


Q ss_pred             EECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        224 TKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       224 ~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      ++||..+....++.+  .++  +|.|.+++.+|+|.|+|.|.|..|...+++.|.+.
T Consensus       330 ~k~g~~l~~~~~~~~--~~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          330 LKNGDPLLTRDRIQI--EQG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             EETTEECCCBTTEEE--ETT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EECCEECCCCccEEE--eCC--EEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence            999999987666543  344  89999999999999999999999999998888643

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.97  E-value=1.3e-29  Score=198.56  Aligned_cols=170  Identities=30%  Similarity=0.500  Sum_probs=145.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.+.++|+|+|..+...   ++.....++...|.|.+++.+|+|.|+|.+.|..|.....+.|.|..
T Consensus        20 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~   99 (194)
T 2a38_A           20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKA   99 (194)
T ss_dssp             TSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEcc
Confidence            789999999999999999999999988754   45566677778999999999999999999999999888877777763


Q ss_pred             cccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcccee
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT  157 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      .                                                                               
T Consensus       100 ~-------------------------------------------------------------------------------  100 (194)
T 2a38_A          100 E-------------------------------------------------------------------------------  100 (194)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             eeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee
Q psy12422        158 RRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~  237 (356)
                                                   ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+.....+.
T Consensus       101 -----------------------------~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~  151 (194)
T 2a38_A          101 -----------------------------TAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ  151 (194)
T ss_dssp             -----------------------------CEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEE
T ss_pred             -----------------------------CCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEE
Confidence                                         122333333445678899999999999999999999999999998887777


Q ss_pred             EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       238 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ....+...+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus       152 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  192 (194)
T 2a38_A          152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL  192 (194)
T ss_dssp             EEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEE
Confidence            77777778999999999999999999999999988887765

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=9.7e-31  Score=220.94  Aligned_cols=261  Identities=15%  Similarity=0.147  Sum_probs=172.5

Q ss_pred             CCceEEEEEeccCC-CCeeEEeeCCEEccc---CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKP-PPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p-~~~v~W~k~g~~l~~---~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.+.| .+.|+|||+|..+..   ....+...++  .|.|.+++.+|+|.|+|.|.|..|.....+.+.+.
T Consensus        20 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~   97 (315)
T 1itb_B           20 NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFV   97 (315)
T ss_dssp             TSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSS--BEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEE
T ss_pred             CCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCC--eEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEe
Confidence            78999999998887 789999999875431   1122233334  79999999999999999999998887776666655


Q ss_pred             ccccchh--hhhhcccccccCccceeeecc------c--CCceeeecccccccCCccccCC-CCceEE---EEeeccccc
Q psy12422         77 SEEESKE--QQELAHNFLYSGDRKYIEKHI------R--PAPAIITTRQEIKSSYSSHTDD-TGRTTT---QMSTLSSNY  142 (356)
Q Consensus        77 ~~~~~~~--~~~~~~~~~~~g~~~~l~c~~------~--p~p~i~w~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~  142 (356)
                      ..++...  ........+.+|+.+.|.|.+      .  |.|.+.|++++..+........ ......   ....+.+.|
T Consensus        98 ~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y  177 (315)
T 1itb_B           98 ENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNY  177 (315)
T ss_dssp             CCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEE
T ss_pred             CCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEE
Confidence            4332221  111223457889999999986      3  7788999998876643211100 000000   122233444


Q ss_pred             cccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCc-eeecCCCeEEEEEEEcCCCCCeE
Q psy12422        143 SSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTD-KTIDDGQCLDLSAVVKGDPEPRV  221 (356)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~~~l~C~~~g~p~p~i  221 (356)
                      .|.+.+               ...+. .........+.+.......+|.+...+.. ..+.+|+.+.|.|.+.|+|.|.+
T Consensus       178 ~C~a~~---------------n~~g~-~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i  241 (315)
T 1itb_B          178 TCHASY---------------TYLGK-QYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA  241 (315)
T ss_dssp             EEEEEE---------------EETTE-EEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEE
T ss_pred             EEEEEc---------------CCCCc-EEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCee
Confidence            444321               11111 11111122222211122466777766643 57899999999999999999999


Q ss_pred             EEEECCEEccCCCceeE----EEeC--------CEEEEEEccCCCCC-CeEEEEEEEcCCCceEEEEEEec
Q psy12422        222 SWTKNGQPLNSSNILDL----KYKN--------GVASLQIQEVFPED-EGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       222 ~W~~~g~~~~~~~~~~~----~~~~--------~~~~L~i~~v~~~d-~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      .|+++|..+........    ....        ..+.|.|.+++.+| +|.|+|.|.|..|....++.|..
T Consensus       242 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v  312 (315)
T 1itb_B          242 YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY  312 (315)
T ss_dssp             EEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEEC
T ss_pred             EEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEe
Confidence            99999999986543211    1111        23589999999999 99999999999999999888863

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=219.42  Aligned_cols=255  Identities=14%  Similarity=0.103  Sum_probs=167.3

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeCCEEccc------C----------CeeEE---ecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKGNRELSK------R----------DYSMS---YSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~g~~l~~------~----------~~~~~---~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++++|.|.+.+ .|.+.|+|+|++.....      .          +..+.   ...+..+|+|.+++.+|+|.|+|.|
T Consensus        14 G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a   93 (308)
T 4fom_A           14 GKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKYICKA   93 (308)
T ss_dssp             TSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCEEEEEEE
T ss_pred             CCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCEEEEEEE
Confidence            899999999854 45567999996432210      0          00011   1123357999999999999999999


Q ss_pred             EeC-CceeEEEEEEEEeccccchhhhhhcccccccCccceeeeccc---CCceeeecccccccCCccccCCCCceEEE--
Q psy12422         61 TNK-HGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHTDDTGRTTTQ--  134 (356)
Q Consensus        61 ~n~-~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~~~~~~~~~~--  134 (356)
                      .|. .|..+..+.+.+...+..............+|+.+.+.|.+.   |.|.+.|++++..+...............  
T Consensus        94 ~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~  173 (308)
T 4fom_A           94 VTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQ  173 (308)
T ss_dssp             EETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEE
T ss_pred             eeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeeccccccc
Confidence            986 667777777777766544433333444567788999999753   88899999988776543322222211110  


Q ss_pred             ------EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC-CceeecCCCeE
Q psy12422        135 ------MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL-TDKTIDDGQCL  207 (356)
Q Consensus       135 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~v~~g~~~  207 (356)
                            ...+.+.|.|.+.+..                ....  ......+.+     ..+|.+...+ ....+.+|+.+
T Consensus       174 l~i~~~~~~d~g~Y~C~a~n~~----------------~~~~--~~~~~~l~V-----~~~P~~~~~~~~~~~~~~g~~v  230 (308)
T 4fom_A          174 YKLFPTRFARGRRITCVVKHPA----------------LEKD--IRYSFILDI-----QYAPEVSVTGYDGNWFVGRKGV  230 (308)
T ss_dssp             EEECCCGGGTTCEEEEEEECTT----------------CSSC--EEEEEECCC-----CEEEEECCBCCCSCEETTCCSC
T ss_pred             ceEEeeeecCCccEEEEEEccC----------------CCCc--eEEeEEEEE-----ecCCeeEEcccceeeeeccccE
Confidence                  1122344444443221                1111  111222222     3455554433 45667889999


Q ss_pred             EEEEEEcCCCCC-eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCC
Q psy12422        208 DLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSS  283 (356)
Q Consensus       208 ~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~  283 (356)
                      +|.|.+.|+|+| .+.|+|++..+.....     ..+...|.|.+++.+|+|.|+|.|.|..|....++.|.+..+|
T Consensus       231 ~l~C~~~g~P~p~~v~W~k~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P  302 (308)
T 4fom_A          231 NLKCNADANPPPFKSVWSRLDGQWPDGLL-----ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP  302 (308)
T ss_dssp             EEECCEEEESCEEEEECCBSSSCCCSSCB-----CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred             EEEEEEecCCCCcEEEEEECCeECCCcEE-----EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence            999999999998 5999999887765421     1233467899999999999999999999999998888755544

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=2.8e-30  Score=221.33  Aligned_cols=261  Identities=15%  Similarity=0.154  Sum_probs=144.4

Q ss_pred             CCceEEEEEeccCCC-----------CeeEEeeCCE------Ecc--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPP-----------PTVKWYKGNR------ELS--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-----------~~v~W~k~g~------~l~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |+++.|.|.+.+.|.           +.|+|||++.      ++.  .....+...++  .|.|.+++.+|+|.|+|.|.
T Consensus        22 G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~a~   99 (349)
T 4dep_C           22 DEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD--VLWFRPTLLNDTGNYTCMLR   99 (349)
T ss_dssp             TSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETT--EEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCC--EEEEccCChhhCEEEEEEEe
Confidence            799999999987664           8999999883      222  11222333444  79999999999999999999


Q ss_pred             eCCceeEEEEEEEEeccccchhhhh--hcccccccCccceeeecc-------cCCceeeecccccccCCccccCCCCceE
Q psy12422         62 NKHGTDETNCVVIVESEEESKEQQE--LAHNFLYSGDRKYIEKHI-------RPAPAIITTRQEIKSSYSSHTDDTGRTT  132 (356)
Q Consensus        62 n~~g~~~~~~~l~v~~~~~~~~~~~--~~~~~~~~g~~~~l~c~~-------~p~p~i~w~~~~~~~~~~~~~~~~~~~~  132 (356)
                      |..+.....+.|.|...+.......  .....+.+|+.+.|.|..       .|.|.+.|++++..+.........+...
T Consensus       100 n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~~~~L  179 (349)
T 4dep_C          100 NTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNL  179 (349)
T ss_dssp             CSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEETTEE
T ss_pred             cCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeecCCEE
Confidence            9999988889999987543322211  223457899999999974       4888999999877653321111111111


Q ss_pred             ---EEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCC-CCCCCeecccCCce--eecCCCe
Q psy12422        133 ---TQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDT-AMTPPQFANKLTDK--TIDDGQC  206 (356)
Q Consensus       133 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~--~v~~g~~  206 (356)
                         .....+.|.|.|.+.+..                +...........+.+.... ...+|.+.......  .+.+|+.
T Consensus       180 ~i~~v~~~d~G~Y~C~a~n~~----------------~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~  243 (349)
T 4dep_C          180 SFLIALISNNGNYTCVVTYPE----------------NGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE  243 (349)
T ss_dssp             EEESCCGGGCEEEEEEEEEEE----------------TTEEEEEEEEEEEEEECCGGGCCSCEEC---------------
T ss_pred             EEeeeeecCCcEEEEEEEEee----------------CCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCc
Confidence               112333455555543321                1111111223333331110 02256666555332  7889999


Q ss_pred             EEEEEEEc----CCCCCeEEEEECCEEccC-CCceeEEE-------eC--CEEEEEEccCCCCCC-eEEEEEEEcCCCce
Q psy12422        207 LDLSAVVK----GDPEPRVSWTKNGQPLNS-SNILDLKY-------KN--GVASLQIQEVFPEDE-GVYVCTATNSLGTA  271 (356)
Q Consensus       207 ~~l~C~~~----g~p~p~i~W~~~g~~~~~-~~~~~~~~-------~~--~~~~L~i~~v~~~d~-G~Y~C~a~n~~g~~  271 (356)
                      +.|.|.+.    |.|.|.+.|+++|..+.. ..++....       .+  ...+|.|.+++.+|+ |.|+|.|.|..|..
T Consensus       244 v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~  323 (349)
T 4dep_C          244 LLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV  323 (349)
T ss_dssp             -CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEE
T ss_pred             EEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcE
Confidence            99999998    678999999999988765 22221100       11  134599999999999 99999999999999


Q ss_pred             EEEEEEec
Q psy12422        272 ETKCKLTP  279 (356)
Q Consensus       272 ~~~~~l~p  279 (356)
                      ...+.|.+
T Consensus       324 ~~~~~l~v  331 (349)
T 4dep_C          324 AKAAKVKQ  331 (349)
T ss_dssp             EEECC---
T ss_pred             EEEEEEee
Confidence            88887764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.97  E-value=3e-29  Score=212.94  Aligned_cols=258  Identities=13%  Similarity=0.033  Sum_probs=164.6

Q ss_pred             CCceEEEEEeccC---------CCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCe-EEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGSTK---------PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~---------p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~g~~~~~   70 (356)
                      |+++.|.|.+.+.         |.+.|+|||+|..+......  ..++  +|.|.+++.+|+| .|+|.|.|..|.....
T Consensus        44 G~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~--~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~  119 (329)
T 3oq3_B           44 GEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNG--DLWIANYTSNDSHRRYLCTVTTKNGDCVQG  119 (329)
T ss_dssp             TSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EETT--EEEESSCCGGGGGCCEEEEEECTTSCEEEE
T ss_pred             CCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--eecc--eEEEcCCChHhCCCcEEEEEEeCCCceeeE
Confidence            8999999999774         66899999999877643222  2334  8999999999999 9999999998776555


Q ss_pred             EEEEEeccccchhhhhhcccccccCccceeeeccc--C-CceeeecccccccCCccccC-CCCceEEEEeeccccccccc
Q psy12422         71 CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--P-APAIITTRQEIKSSYSSHTD-DTGRTTTQMSTLSSNYSSST  146 (356)
Q Consensus        71 ~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p-~p~i~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  146 (356)
                      ..+.|...++. .........+.+|+.+.|.|.+.  | .|.+.|++++..+....... .....             ..
T Consensus       120 ~~~~v~~~~p~-~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~-------------L~  185 (329)
T 3oq3_B          120 IVRSHIRKPPS-CIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN-------------LI  185 (329)
T ss_dssp             EEEEEECCCCS-CEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTE-------------EE
T ss_pred             EEEEEEcCCCc-EeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCE-------------EE
Confidence            44344433222 11111223467899999999887  5 67899999887663211100 00000             11


Q ss_pred             cccCCCccceeeeeecccc--CCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCC---CC-e
Q psy12422        147 NNATSPSKKITRRMNSILD--TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP---EP-R  220 (356)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p---~p-~  220 (356)
                      .......+.+.|.|.....  .+...........+.+........|.+  .+....+.+|+.+.|.|.+.|.|   +| .
T Consensus       186 I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~--~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~  263 (329)
T 3oq3_B          186 IHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI--LDPKINVTIGEPANITCTAVSTSLLVDDVL  263 (329)
T ss_dssp             ECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE--CCSEEEECTTSCEEEEEEEEETTCCTTCCE
T ss_pred             EeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee--cCCeeEEecCCCEEEEEEEEECCCCCCCcE
Confidence            1112223333333333322  222222222223344421110111333  55668899999999999999998   77 8


Q ss_pred             EEEEECCEEc-cCCCceeEE--EeC--CEEEEEEccCCCCCCe-EEEEEEEcCCCceEEEEEEe
Q psy12422        221 VSWTKNGQPL-NSSNILDLK--YKN--GVASLQIQEVFPEDEG-VYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       221 i~W~~~g~~~-~~~~~~~~~--~~~--~~~~L~i~~v~~~d~G-~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|+++|..+ .........  ...  ....|.|.+++.+|+| .|+|.|.|..|....++.|.
T Consensus       264 v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~  327 (329)
T 3oq3_B          264 IDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV  327 (329)
T ss_dssp             EEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEE
T ss_pred             EEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEE
Confidence            8999999874 333322211  122  3468999999999999 99999999999988887764

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.97  E-value=1.7e-28  Score=192.61  Aligned_cols=172  Identities=22%  Similarity=0.404  Sum_probs=141.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.+.++|||+|..+...  ++... ..++...|.|.+++.+|+|.|+|.+.|..|.....+.|.|..
T Consensus        19 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~   98 (197)
T 2j8h_A           19 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV   98 (197)
T ss_dssp             TSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcC
Confidence            789999999999999999999999998753  33332 456677999999999999999999999999888888888864


Q ss_pred             cccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcccee
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT  157 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      ++..                                                                            
T Consensus        99 ~p~~----------------------------------------------------------------------------  102 (197)
T 2j8h_A           99 PAKI----------------------------------------------------------------------------  102 (197)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             CCcC----------------------------------------------------------------------------
Confidence            3210                                                                            


Q ss_pred             eeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee
Q psy12422        158 RRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~  237 (356)
                                                    ..|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+....++.
T Consensus       103 ------------------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~  152 (197)
T 2j8h_A          103 ------------------------------HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQ  152 (197)
T ss_dssp             ------------------------------CCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCE
T ss_pred             ------------------------------CCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEE
Confidence                                          01111122334578899999999999999999999999999998777777


Q ss_pred             EEEeCCEEEEEEcc-CCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        238 LKYKNGVASLQIQE-VFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       238 ~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +........|.|.+ ++.+|+|.|+|.|.|..|....++.|.
T Consensus       153 ~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  194 (197)
T 2j8h_A          153 VIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD  194 (197)
T ss_dssp             EEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEE
Confidence            76667778999999 999999999999999999988887775

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.97  E-value=9.1e-30  Score=199.57  Aligned_cols=163  Identities=13%  Similarity=0.100  Sum_probs=121.5

Q ss_pred             CCceEEEEE---eccCCCCeeEEeeCCEEccc------------------CCeeEEecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKV---GSTKPPPTVKWYKGNRELSK------------------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~---~~g~p~~~v~W~k~g~~l~~------------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      |++++|.|.   +.+.|.+.|+|||+|..+..                  ..+......+...|.|.+++.+|+|.|+|.
T Consensus         8 Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   87 (203)
T 4fa8_A            8 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCR   87 (203)
T ss_dssp             TCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeEEEEE
Confidence            899999995   57889999999998743321                  123334455677999999999999999999


Q ss_pred             EEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecc
Q psy12422         60 ATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLS  139 (356)
Q Consensus        60 a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (356)
                      |.|..|.....+.|.|..+                                                             
T Consensus        88 a~n~~g~~~~~~~l~V~~p-------------------------------------------------------------  106 (203)
T 4fa8_A           88 MKLGETEVTKQEHLSVVKP-------------------------------------------------------------  106 (203)
T ss_dssp             EEETTEEEEEEEEEEEEEE-------------------------------------------------------------
T ss_pred             EEcCCCcEEEEEEEEecCC-------------------------------------------------------------
Confidence            9999999988888888643                                                             


Q ss_pred             ccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCC
Q psy12422        140 SNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP  219 (356)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p  219 (356)
                                                                        |.+...+....+.+|+.++|.|.+.|+|.|
T Consensus       107 --------------------------------------------------~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P  136 (203)
T 4fa8_A          107 --------------------------------------------------LTLSVHSERSQFPDFSVLTVTCTVNAFPHP  136 (203)
T ss_dssp             --------------------------------------------------EEEEEEEEECCSSCSCCEEEEEEEEEESCC
T ss_pred             --------------------------------------------------ceeeecceeEEEcCCCEEEEEEEcCCCCCC
Confidence                                                              222222334457789999999999999999


Q ss_pred             eEEEEECCEEccC----CCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        220 RVSWTKNGQPLNS----SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       220 ~i~W~~~g~~~~~----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      .|.|++++..+..    ..++....++....|.|.+++.+|+|.|+|.|.|..|.++..
T Consensus       137 ~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          137 HVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             EEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             EEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            9999986654432    223333334445667788999999999999999999988764

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.96  E-value=2.8e-29  Score=206.60  Aligned_cols=236  Identities=17%  Similarity=0.191  Sum_probs=155.8

Q ss_pred             CCceEEEEEecc-CCCC--eeEEeeCCEEcccCCeeEEecCCeEEEEEeeC---CCCCCeE--EEEEEEeCCceeEEEEE
Q psy12422          1 MQNVIKVKVGST-KPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDC---KPEDSGE--YKCVATNKHGTDETNCV   72 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~--~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~---~~~D~G~--Y~C~a~n~~g~~~~~~~   72 (356)
                      |++++|.|.+.| .|.|  .|+|||+|..+..   .+...++  .|.+..+   +.+|+|.  |+|.+.|..|..+..+.
T Consensus        18 G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~---~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~   92 (265)
T 2oz4_A           18 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---TVTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT   92 (265)
T ss_dssp             TEEEEEEEEEESCSCGGGCEEEEEETTEECCC---EEEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEEEccCCCCCcceEEEEEeCCEECCc---eEeeCCC--eEEEEeecccccccCCcceEEEEEecCCCCcEEEEE
Confidence            789999999988 8877  9999999999864   2333344  4444444   7788885  99999999999888899


Q ss_pred             EEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCC
Q psy12422         73 VIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSP  152 (356)
Q Consensus        73 l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (356)
                      |.|...+.+  ........+.+|+.+.|.|.+.|.|.+.|  ++..+.... .............+.+.|.|.+.+..  
T Consensus        93 l~V~~~p~p--~~~~~~~~v~~G~~v~l~C~~~p~~~i~W--~g~~~~~~~-~~~~l~i~~~~~~~~g~Y~C~a~n~~--  165 (265)
T 2oz4_A           93 VTIYSFPAP--NVILTKPEVSEGTEVTVKCEAHPRAKVTL--NGVPAQPLG-PRAQLLLKATPEDNGRSFSCSATLEV--  165 (265)
T ss_dssp             EEEECCCCC--EEEESCSEEETTCEEEEEEECCTTSEEEE--SSCSSSCCS-SEECCEEECCGGGTTEEEEEEEEEEC--
T ss_pred             EEEeCCCCc--eeecCCceecCCCcEEEEEEccCCCEEEE--CCEEccCCC-CcEEEEEccccccCCceEEEEEEcCC--
Confidence            999764431  12234455788999999999999999999  433331110 00000000111122233555543111  


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeeccc--CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANK--LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL  230 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~  230 (356)
                                    .+.....+....+.+     ..+|.+...  +....+.+|+.+.|.|.+.|+|.|.+.|+++|..+
T Consensus       166 --------------~g~~~~~s~~~~l~V-----~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~  226 (265)
T 2oz4_A          166 --------------AGQLIHKNQTRELRV-----LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP  226 (265)
T ss_dssp             --------------SSSEEEEEEEEEEEE-----EEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEE
T ss_pred             --------------CCCcccccccEEEEE-----EeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCccc
Confidence                          111111112233333     334444332  45678999999999999999999999999988732


Q ss_pred             cCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        231 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       231 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      ...         +  .+  ..++.+|+|.|+|.|.|..|.....+.|.+.
T Consensus       227 ~~~---------g--~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          227 LPI---------G--ES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             CCT---------T--SC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCC---------C--cE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence            221         1  12  2488899999999999999999988887643

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.96  E-value=2.7e-29  Score=213.19  Aligned_cols=253  Identities=12%  Similarity=0.146  Sum_probs=151.9

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeCCEEcc----c------CCeeEEe-----cCCeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKGNRELS----K------RDYSMSY-----SDGVVSMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~g~~l~----~------~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+++.|.|.+.+. |.+.|+|||++.++.    .      .++....     ..+..+|.|.+++.+|+|.|+|.|.|..
T Consensus        18 G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   97 (327)
T 2wng_A           18 GESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKG   97 (327)
T ss_dssp             TSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESS
T ss_pred             CCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecCC
Confidence            7899999999887 889999999875432    0      0111111     1344589999999999999999999986


Q ss_pred             cee-----EEEEEEEEeccccchhhhhhcccccccCccceeeeccc--CCc--eeeecccccccCCcccc---CCCCceE
Q psy12422         65 GTD-----ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--PAP--AIITTRQEIKSSYSSHT---DDTGRTT  132 (356)
Q Consensus        65 g~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p--~i~w~~~~~~~~~~~~~---~~~~~~~  132 (356)
                      +..     ...+.|.|...+..+... .+...+.+|+.+.|.|.+.  |.|  .+.|++++..+......   .......
T Consensus        98 ~~~~~~~~~~~~~l~V~~~p~~p~i~-~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~  176 (327)
T 2wng_A           98 SPDTEFKSGAGTELSVRAKPSAPVVS-GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSY  176 (327)
T ss_dssp             TTCEEEEECCCEEEEEEBCCCCCEEE-CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCE
T ss_pred             CcceeEeecCcEEEEEEecCCCceee-ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCce
Confidence            532     234677787655443222 2335678999999999987  444  79999987666433211   0000000


Q ss_pred             EE--------Ee-eccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecC
Q psy12422        133 TQ--------MS-TLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDD  203 (356)
Q Consensus       133 ~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~  203 (356)
                      ..        .. .+.+.|.|.+.+......               .........+.+     ..+|.+...+..  +.+
T Consensus       177 ~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~---------------~~~~~~~~~~~v-----~~~P~i~~~~~~--~~~  234 (327)
T 2wng_A          177 SIHSTAKVVLTREDVHSQVICEVAHVTLQGD---------------PLRGTANLSETI-----RVPPTLEVTQQP--VRA  234 (327)
T ss_dssp             EEEEEEEEECCTTGGGCEEEEEEECTTSCSC---------------CEEEEEEGGGTB-----CBCCEEEEEEEC--CSS
T ss_pred             EEEEEEEEechhcCcCceEEEEEeccccCCC---------------cccceEEecccc-----CCCCEEEEecCC--cCC
Confidence            00        00 112444444433221110               001111111122     456766655433  789


Q ss_pred             CCeEEEEEEEcCCC-CC-eEEEEECCEEccCCCceeEEEe-CC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        204 GQCLDLSAVVKGDP-EP-RVSWTKNGQPLNSSNILDLKYK-NG----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       204 g~~~~l~C~~~g~p-~p-~i~W~~~g~~~~~~~~~~~~~~-~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      |+.+.|.|.+.|.| ++ .+.|++||..+........... .+    ...|.|..+..+|+|.|+|.|.|..+.......
T Consensus       235 G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~  314 (327)
T 2wng_A          235 ENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSH  314 (327)
T ss_dssp             TTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEE
T ss_pred             CCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhhe
Confidence            99999999999854 44 7999999998864322111211 12    146899999999999999999999997654433

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.96  E-value=2.2e-29  Score=219.98  Aligned_cols=250  Identities=15%  Similarity=0.219  Sum_probs=171.9

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEE-cccCCeeEEecCCeEEEEEeeCCCCC-CeEEEEEEEeCCceeEE---EEEEE
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRE-LSKRDYSMSYSDGVVSMEIIDCKPED-SGEYKCVATNKHGTDET---NCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~-l~~~~~~~~~~~~~~~L~i~~~~~~D-~G~Y~C~a~n~~g~~~~---~~~l~   74 (356)
                      |+++.|.|.+ .+.|.+.++|+|++.. +..........++  .|.|.+++.+| +|.|+|.|.|..|....   .+.+.
T Consensus       131 G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~  208 (404)
T 3p3y_A          131 GAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLK  208 (404)
T ss_dssp             TSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTS--CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEE
T ss_pred             CCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCC--cEEEEeeeeccCCcceEEEEEeccccceeccCceeEE
Confidence            7899999999 8899999999998744 3333333334445  69999999999 59999999998776432   24555


Q ss_pred             Eeccccc----hhh----hhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCC-CceEE---EEeeccc
Q psy12422         75 VESEEES----KEQ----QELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDT-GRTTT---QMSTLSS  140 (356)
Q Consensus        75 v~~~~~~----~~~----~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~  140 (356)
                      |......    +..    .......+.+|+.+.|.|.+.  |.|.+.|++++..+......... .....   ....+.|
T Consensus       209 v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  288 (404)
T 3p3y_A          209 VLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSG  288 (404)
T ss_dssp             EECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCE
T ss_pred             EeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCE
Confidence            5432111    110    011234578999999999987  67789999987766432211000 00000   1222334


Q ss_pred             cccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCe
Q psy12422        141 NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR  220 (356)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~  220 (356)
                      .|.|.+.+..                +    .......+.+     ..+|.+...+....+.+|+.+.|.|.+.|+|.|.
T Consensus       289 ~Y~C~a~n~~----------------g----~~~~~~~l~V-----~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~  343 (404)
T 3p3y_A          289 EYFCLASNKM----------------G----SIRHTISVRV-----KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPT  343 (404)
T ss_dssp             EEEEEEECSS----------------C----EEEEEEEEEE-----EEEEEEEECCCCEEECTTCCEEEECEEEEESCCE
T ss_pred             EEEEEEEeCC----------------C----cEEEEEEEEE-----eCCCeeeccCCcceeecCCcEEEEEEccccCCCc
Confidence            4444432221                1    1223344444     4567777777888999999999999999999999


Q ss_pred             EEEEECCEEccCCCc-eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422        221 VSWTKNGQPLNSSNI-LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       221 i~W~~~g~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      +.|+++|..+..... ......++  +|.|.+++.+|+|.|+|.|.|..|....++.|.+
T Consensus       344 v~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  401 (404)
T 3p3y_A          344 VQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV  401 (404)
T ss_dssp             EEEEETTEEGGGSCCCTTEEEETT--EEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEECCEecCCCCCCceEEecCC--EEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEE
Confidence            999999999876532 22333344  8999999999999999999999999998888764

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.96  E-value=3.5e-29  Score=217.56  Aligned_cols=250  Identities=17%  Similarity=0.192  Sum_probs=165.1

Q ss_pred             CCceEEEEEeccCCC---CeeEEeeCCEEccc-----CCeeEEecCCeEEEEEeeCCCCCC-eEEEEEEEeCCceeEE-E
Q psy12422          1 MQNVIKVKVGSTKPP---PTVKWYKGNRELSK-----RDYSMSYSDGVVSMEIIDCKPEDS-GEYKCVATNKHGTDET-N   70 (356)
Q Consensus         1 g~~v~l~C~~~g~p~---~~v~W~k~g~~l~~-----~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~n~~g~~~~-~   70 (356)
                      |+++.|.|.+.+.|.   +.++|+|++..+..     ........++  .|.|.+++.+|+ |.|+|.+.|..+.... .
T Consensus       118 G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~  195 (388)
T 2v5m_A          118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLS  195 (388)
T ss_dssp             TSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTS--CEEESSCCGGGGGCCEEEEEEETTTCCEEEC
T ss_pred             CCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCC--cEEEecCCccccCeeEEEEeccCCCCceeec
Confidence            789999999987653   78999999877632     1122233344  799999999999 9999999998543322 1


Q ss_pred             ---EEEEEecccc----chhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCCceEEEEeecccc
Q psy12422         71 ---CVVIVESEEE----SKEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSN  141 (356)
Q Consensus        71 ---~~l~v~~~~~----~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (356)
                         ..|.|..+..    ...........+.+|+.+.|.|.+.  |.|.+.|+++..............+....    .+ 
T Consensus       196 ~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~-  270 (388)
T 2v5m_A          196 ATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV----SG-  270 (388)
T ss_dssp             SSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEE----TT-
T ss_pred             cccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecc----cC-
Confidence               3455554311    1111112234578899999999987  88889999975433221111111111000    00 


Q ss_pred             ccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeE
Q psy12422        142 YSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRV  221 (356)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i  221 (356)
                        .+........+.+.|.|......+    .......+.+     ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+
T Consensus       271 --~L~i~~v~~~d~G~Y~C~a~n~~g----~~~~~~~l~V-----~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i  339 (388)
T 2v5m_A          271 --TLIIKDAVVEDSGKYLCVVNNSVG----GESVETVLTV-----TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV  339 (388)
T ss_dssp             --EEEESSCCGGGCEEEEEEEECSSC----EEEEEEEEEE-----EEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEE
T ss_pred             --EEEECcCCHHHCeEEEEEEecCCC----ceeEEEEEEE-----eCCCccccCCCcEEecCCCCEEEEEEeccccCCeE
Confidence              011112223333344443332222    1223334444     44566666677888999999999999999999999


Q ss_pred             EEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        222 SWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       222 ~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      .|+++|..+....          ..|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus       340 ~W~~~g~~i~~~~----------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  386 (388)
T 2v5m_A          340 SWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK  386 (388)
T ss_dssp             EEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             EEEECCEECccCC----------CEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEE
Confidence            9999999886432          3799999999999999999999999999888775

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=193.93  Aligned_cols=183  Identities=19%  Similarity=0.288  Sum_probs=131.7

Q ss_pred             CCceEEEEEec-cCCCCeeEEeeCCEEcccC-CeeEEecC--CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGS-TKPPPTVKWYKGNRELSKR-DYSMSYSD--GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~-~~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+.+.|.|.+. +.|.|.|+|||||+++..+ ++.+....  +..+|.|.+++.+|+|.|+|.|.|  |.+.....+.+.
T Consensus        17 g~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~~~~~~~   94 (207)
T 3rbs_A           17 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTVVLV   94 (207)
T ss_dssp             GGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEEEEEEEC
T ss_pred             CCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEEEEEEEE
Confidence            67899999995 5899999999999999754 44444433  677899999999999999999999  455544444332


Q ss_pred             ccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccce
Q psy12422         77 SEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKI  156 (356)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      ............. .+.                 .|                                            
T Consensus        95 ~~~~~~~~~~~~~-~~~-----------------~~--------------------------------------------  112 (207)
T 3rbs_A           95 GDVFKKLQKEAEF-QRQ-----------------EW--------------------------------------------  112 (207)
T ss_dssp             THHHHHHHHHHHH-HHH-----------------HH--------------------------------------------
T ss_pred             ccchhhhcccccc-ccc-----------------cc--------------------------------------------
Confidence            2100000000000 000                 00                                            


Q ss_pred             eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCC-CCCeEEEEECCEEccCCCc
Q psy12422        157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKNGQPLNSSNI  235 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~~g~~~~~~~~  235 (356)
                                            +      ...+|.+...+ ...+.+|+.+.|.|.+.|. |.|.++|+|||..+....+
T Consensus       113 ----------------------~------~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~  163 (207)
T 3rbs_A          113 ----------------------I------RKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK  163 (207)
T ss_dssp             ----------------------H------HHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCC
T ss_pred             ----------------------c------cCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCc
Confidence                                  0      01245554444 3678899999999999998 9999999999999976554


Q ss_pred             eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       236 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +  ....+..+|.|.+++.+|+|.|+|.|.|..|.+..++.|.
T Consensus       164 ~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~  204 (207)
T 3rbs_A          164 H--DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV  204 (207)
T ss_dssp             C--CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             e--EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEe
Confidence            3  2234456899999999999999999999999999998885

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.96  E-value=1.1e-28  Score=205.67  Aligned_cols=257  Identities=14%  Similarity=0.124  Sum_probs=166.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE   80 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~   80 (356)
                      |++++|.|.+.+    .|+|++++....    ......+...|+|.+++.+|+|.|+|.+.|..+.....+.|.|.+++.
T Consensus        19 G~~v~L~C~~~~----~v~W~~~~~~~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~   90 (289)
T 3ejj_X           19 GETVTLRCVSNG----SVEWDGPISPYW----TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAH   90 (289)
T ss_dssp             TCCEEEEEECSS----CCEEECSCSSSS----EECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSC
T ss_pred             CCCEEEEEEeCC----cEEEccCCCceE----EEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCc
Confidence            789999999977    499998764321    222333445899999999999999999999988888889999987654


Q ss_pred             chhhhhhcccccccCccceeeeccc--CCce-eeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcccee
Q psy12422         81 SKEQQELAHNFLYSGDRKYIEKHIR--PAPA-IITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT  157 (356)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~-i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      ... .......+.+|+.+.|.|.+.  +.+. +.|++.+.........     . ..  ...+.   .........+.+.
T Consensus        91 ~~~-~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~-----~-~~--~~~~~---L~i~~v~~~d~G~  158 (289)
T 3ejj_X           91 SWN-LLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTV-----Y-FF--SPWRG---FIIRKAKVLDSNT  158 (289)
T ss_dssp             SEE-ESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCC-----E-EE--ETTTE---EEESSCCGGGCEE
T ss_pred             cee-cccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCcc-----E-EE--CCCCC---EEEeecccccCEE
Confidence            422 222455678999999999987  3333 9998754433211110     0 00  00000   1111122222333


Q ss_pred             eeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC-CCCCeEEEEECCEEccCCCce
Q psy12422        158 RRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSSNIL  236 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~  236 (356)
                      |.|....   ...........+.+... ...+|.+...+....+.+|+.+.|.|.+.+ .|.|.+.|+++|..+......
T Consensus       159 Y~C~a~~---~~~~~~~~~~~l~V~~~-~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~  234 (289)
T 3ejj_X          159 YVCKTMV---NGRESTSTGIWLKVNRV-HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNS  234 (289)
T ss_dssp             EEEEEEE---TTEEEECCCEEEEEESS-CCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEE
T ss_pred             EEEEEEe---CCCccccccEEEEEEEC-CCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCc
Confidence            3333221   11122223334444211 135788888887788889999999999988 799999999999988754322


Q ss_pred             eEEE--eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCC
Q psy12422        237 DLKY--KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLN  281 (356)
Q Consensus       237 ~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~  281 (356)
                      ....  ......|.|.+++.+|+|.|+|.|.|..|...+++.|....
T Consensus       235 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~  281 (289)
T 3ejj_X          235 DFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE  281 (289)
T ss_dssp             EECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred             ccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence            2110  01145899999999999999999999999999999987443

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.96  E-value=1.6e-28  Score=207.03  Aligned_cols=250  Identities=15%  Similarity=0.177  Sum_probs=162.2

Q ss_pred             CCceEEEEEeccCCCC-----eeEEeeCCEEcc-------------cC-CeeEEe-----cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPPP-----TVKWYKGNRELS-------------KR-DYSMSY-----SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~-----~v~W~k~g~~l~-------------~~-~~~~~~-----~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.+.|.+     .|+|+|+|....             .. ++....     ..+..+|+|.+++.+|+|.|
T Consensus        15 G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   94 (313)
T 4fqp_A           15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNY   94 (313)
T ss_dssp             TSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhCEEE
Confidence            8999999999887665     489999875421             11 111100     11234799999999999999


Q ss_pred             EEEEEe-CCceeEEEEEEEEeccccchhhhhhcccccccCccceeeeccc---CCceeeecccccccCCccccC--CCCc
Q psy12422         57 KCVATN-KHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHTD--DTGR  130 (356)
Q Consensus        57 ~C~a~n-~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~~--~~~~  130 (356)
                      +|.+.+ ..+.....+.|.+...+...  .......+.+++...+.|.+.   |.|.+.|+++...........  ..+.
T Consensus        95 ~C~v~~~~~~~~~~~~~l~v~~~P~~~--~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~  172 (313)
T 4fqp_A           95 TCLFVTFPQGSRSVDIWLRVLAKPQNT--AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT  172 (313)
T ss_dssp             EEEEECSSSCEEEEEEEECCBBCCEEE--EEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTC
T ss_pred             EEEEeeccCcceeeeeeeeeccCCcce--ecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccc
Confidence            999864 46666677777666543322  222334466788888888764   888999999876654322111  1111


Q ss_pred             eEE---E-----EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeeccc-CCceee
Q psy12422        131 TTT---Q-----MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANK-LTDKTI  201 (356)
Q Consensus       131 ~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v  201 (356)
                      ...   .     ...+.+.|.|.+.+..                ...  .......+.+     ..+|.+... .....+
T Consensus       173 ~~~~s~l~i~~~~~~d~g~Y~C~a~n~~----------------~~~--~~~~~~~l~V-----~~~P~v~~~~~~~~~~  229 (313)
T 4fqp_A          173 VTVTSLWILVPSSQVDGKNVTCKVEHES----------------FEK--PQLLTVNLTV-----YYPPEVSISGYDNNWY  229 (313)
T ss_dssp             EEEEEEEEECCCGGGTTCEEEEEEECTT----------------SSS--CEEEEEECCB-----CEEEEEEEECCCSCEE
T ss_pred             cccceeeeecccccccCeeEEEEEEccC----------------cCc--cceeeeeccc-----ccCCccccccccceee
Confidence            100   0     0112234444432211                111  1112222333     445666443 355567


Q ss_pred             cCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        202 DDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      .+|+.++|.|.+.|+|.| .|+|+++|..+....    ...++  +|.|.+++.+|+|.|+|.|.|..|....++.|.+.
T Consensus       230 ~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~----~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          230 LGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA----VAQGA--QLLIRPVDKPINTTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             TTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE----EEETT--EEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEecCCCCCcEEEEEECCEECCCce----EEeCC--EEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            789999999999999999 599999998886542    22333  79999999999999999999999999998888754


Q ss_pred             C
Q psy12422        281 N  281 (356)
Q Consensus       281 ~  281 (356)
                      .
T Consensus       304 ~  304 (313)
T 4fqp_A          304 E  304 (313)
T ss_dssp             C
T ss_pred             e
Confidence            3

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.96  E-value=8.3e-28  Score=190.97  Aligned_cols=169  Identities=22%  Similarity=0.407  Sum_probs=134.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEE-e-cCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMS-Y-SDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~-~-~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.+.|+|+|+|..+...+.... . ......|.|.+++ .+|+|.|+|.|.|..|.....+.|.|..
T Consensus        21 G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  100 (212)
T 2yd6_A           21 GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLR  100 (212)
T ss_dssp             TSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEec
Confidence            78999999999999999999999999986654332 2 2345689999994 9999999999999999988888888864


Q ss_pred             cccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcccee
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT  157 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      .+..+                                                                           
T Consensus       101 ~~~~~---------------------------------------------------------------------------  105 (212)
T 2yd6_A          101 EDQIP---------------------------------------------------------------------------  105 (212)
T ss_dssp             GGGCC---------------------------------------------------------------------------
T ss_pred             cCccC---------------------------------------------------------------------------
Confidence            31100                                                                           


Q ss_pred             eeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC---C
Q psy12422        158 RRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS---N  234 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~---~  234 (356)
                                                   ...|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+...   .
T Consensus       106 -----------------------------~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~  156 (212)
T 2yd6_A          106 -----------------------------RGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNG  156 (212)
T ss_dssp             -----------------------------TTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------C
T ss_pred             -----------------------------CCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCc
Confidence                                         12344555555667889999999999999999999999999998754   3


Q ss_pred             ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       235 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      ++..........|.|.+++.+|+|.|+|.|.|..|....
T Consensus       157 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s  195 (212)
T 2yd6_A          157 RIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYS  195 (212)
T ss_dssp             CEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             eEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcccc
Confidence            344444456689999999999999999999999997654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=201.99  Aligned_cols=199  Identities=19%  Similarity=0.247  Sum_probs=146.1

Q ss_pred             CCceEEEEEeccCCCC-eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.+.|.+ .++|+|+|..+....         ..|.|.+++.+|+|.|+|.+.|..+..  .+.|.|... 
T Consensus        16 G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~---------~~l~i~~~~~~d~G~Y~C~~~~~~~s~--~~~l~v~~~-   83 (262)
T 3rjd_A           16 EETVTLHCEVLHLPGSSSTQWFLNGTATQTST---------PSYRITSASVNDSGEYRCQRGLSGRSD--PIQLEIHRG-   83 (262)
T ss_dssp             TCCEEEEEECSSCCCTTCEEEEETTEECSCCS---------SEEEESSCCGGGCEEEEEEESSSCCCC--CEEEEEECS-
T ss_pred             CCeEEEEEECCCCCCCceEEEEECCEEeeccC---------CeEEEecCCcccCeEEEEEEecCCccc--cEEEEEecc-
Confidence            7899999999999888 999999999886431         279999999999999999998765433  344444321 


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                                                                                                      
T Consensus        84 --------------------------------------------------------------------------------   83 (262)
T 3rjd_A           84 --------------------------------------------------------------------------------   83 (262)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeE
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDL  238 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~  238 (356)
                                                    + +...+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+...     
T Consensus        84 ------------------------------~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----  127 (262)
T 3rjd_A           84 ------------------------------W-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----  127 (262)
T ss_dssp             ------------------------------S-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----
T ss_pred             ------------------------------c-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-----
Confidence                                          0 0111123457789999999999 78888999999999887422     


Q ss_pred             EEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC---CCCccc-----------------------------
Q psy12422        239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL---NSSNIL-----------------------------  286 (356)
Q Consensus       239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~---~~~~~~-----------------------------  286 (356)
                       ...  ..|.|.+++.+|+|.|+|.|.|..+.....+.+...   ..+.+.                             
T Consensus       128 -~~~--~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~  204 (262)
T 3rjd_A          128 -HWN--SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQ  204 (262)
T ss_dssp             -EEC--CCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----
T ss_pred             -CCC--CeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCcc
Confidence             112  379999999999999999999999776665555421   111110                             


Q ss_pred             -eeEEeC---------CeEEEEEecCCCCCCeEEEEEEEcCCcceEE---EEEEEEE
Q psy12422        287 -DLKYKN---------GVASLQIQEVFPEDEGVYVCTATNSLGTAET---KCKLTVR  330 (356)
Q Consensus       287 -~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~---~~~l~V~  330 (356)
                       .+.|.+         ....|.|.+++.+|+|.|+|.|.|..|....   .+.|.|+
T Consensus       205 ~~~~w~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~  261 (262)
T 3rjd_A          205 LYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL  261 (262)
T ss_dssp             EEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEE
T ss_pred             EEEEEEeCCcEecccCCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEe
Confidence             134433         3457999999999999999999999997532   4555554

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.96  E-value=1.4e-27  Score=186.26  Aligned_cols=162  Identities=27%  Similarity=0.357  Sum_probs=133.7

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.+.|.  +.++|+|+|..+.......    ....|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+
T Consensus        18 G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~~~   92 (190)
T 2wv3_A           18 LLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA----SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAA   92 (190)
T ss_dssp             SSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC----SEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEECC
T ss_pred             CceEEEEEEeccCCCCceEEEEEECCEECcccceEe----ccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEecC
Confidence            789999999988887  7899999999997654322    4468999999999999999999999 88777777777532


Q ss_pred             ccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (190)
T 2wv3_A           93 --------------------------------------------------------------------------------   92 (190)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc---CC
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN---SS  233 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~---~~  233 (356)
                                                     |.+...+....+.+|+.+.|.|.+.|+|.|.+.|++  +|..+.   ..
T Consensus        93 -------------------------------p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~  141 (190)
T 2wv3_A           93 -------------------------------PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSS  141 (190)
T ss_dssp             -------------------------------CEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTT
T ss_pred             -------------------------------CcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCC
Confidence                                           333333445678899999999999999999999999  887765   34


Q ss_pred             CceeEEEeCCEEEEEEccCC-CCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        234 NILDLKYKNGVASLQIQEVF-PEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       234 ~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      .++.+...+...+|.|.+++ .+|+|.|+|.|.|..|....++.|.
T Consensus       142 ~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  187 (190)
T 2wv3_A          142 GRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR  187 (190)
T ss_dssp             SCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEE
Confidence            55666666666799999999 7999999999999999988887775

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.96  E-value=2.1e-29  Score=218.59  Aligned_cols=247  Identities=21%  Similarity=0.312  Sum_probs=169.2

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcc--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE-----EEE
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELS--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-----NCV   72 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~-----~~~   72 (356)
                      |+++.|.|.+ .+.|.+.++|+|++.++.  ........ .....|.|.+++.+|+|.|+|.+.|..|....     .+.
T Consensus       116 G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~  194 (382)
T 1cs6_A          116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS-QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQ  194 (382)
T ss_dssp             TSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC-TTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEE
T ss_pred             CCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEe-cCceEEEEEeeCcccCeeEEEEEEEccccccceeEcccee
Confidence            7899999996 567889999999987753  22222222 22237999999999999999999997743322     244


Q ss_pred             EEEeccc--c-chh--hhhhcccccccCccceeeeccc--CCceeeecccccccCCccccCCCCceEE---EEeeccccc
Q psy12422         73 VIVESEE--E-SKE--QQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTDDTGRTTT---QMSTLSSNY  142 (356)
Q Consensus        73 l~v~~~~--~-~~~--~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  142 (356)
                      |.|....  . .+.  ........+.+|+.+.|.|.+.  |.|.+.|++++......  .........   ....+.+.|
T Consensus       195 l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y  272 (382)
T 1cs6_A          195 LSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTY  272 (382)
T ss_dssp             EEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC--CSBSSSEEEECSCCGGGCEEE
T ss_pred             eccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE--EecCCcEEEEccCChhhCEEE
Confidence            5443210  0 111  1112245678999999999986  77889999987664321  000111111   122334455


Q ss_pred             cccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEE
Q psy12422        143 SSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS  222 (356)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~  222 (356)
                      .|.+.+...                    .......+.+     ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.
T Consensus       273 ~C~a~n~~g--------------------~~~~~~~l~V-----~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~  327 (382)
T 1cs6_A          273 ECEAENIKG--------------------RDTYQGRIII-----HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVR  327 (382)
T ss_dssp             EEEEEETTE--------------------EEEEEEEEEE-----EEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEE
T ss_pred             EEEEEcCCC--------------------eEEEEEEEEE-----ecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEE
Confidence            555432221                    1122333444     455777777777889999999999999999999999


Q ss_pred             EEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422        223 WTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       223 W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      |+++|..+....++..  .++  .|.|.+++.+|+|.|+|.|.|..|....++.|.+
T Consensus       328 W~~~g~~~~~~~~~~~--~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  380 (382)
T 1cs6_A          328 WLRDGQPLASQNRIEV--SGG--ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV  380 (382)
T ss_dssp             EEETTEECCCCSSEEE--ETT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEECCEECCCCceEEE--ECC--EEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEE
Confidence            9999999987765543  333  8999999999999999999999999998888753

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.96  E-value=1.3e-28  Score=217.75  Aligned_cols=250  Identities=15%  Similarity=0.134  Sum_probs=150.6

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEcc------------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NRELS------------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l~------------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.+.+  .+.|.|||+  |..+.                  ..++....  ..+..+|.|.+++.+|+|.|
T Consensus        15 G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   94 (444)
T 1igt_B           15 GGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMY   94 (444)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHHHCEEE
Confidence            78999999998764  578999985  33210                  12333322  24567999999999999999


Q ss_pred             EEEEEeCCce---eEEEEEEEEecccc-chhhh-hhcccccccCccceeeeccc---CCc-eeeecccccccCCcccc--
Q psy12422         57 KCVATNKHGT---DETNCVVIVESEEE-SKEQQ-ELAHNFLYSGDRKYIEKHIR---PAP-AIITTRQEIKSSYSSHT--  125 (356)
Q Consensus        57 ~C~a~n~~g~---~~~~~~l~v~~~~~-~~~~~-~~~~~~~~~g~~~~l~c~~~---p~p-~i~w~~~~~~~~~~~~~--  125 (356)
                      .|.+.|..+.   ....+.|.|..... .+... ..+...+.+|+.+.|.|.+.   |.| .+.|++++.........  
T Consensus        95 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~  174 (444)
T 1igt_B           95 YCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAV  174 (444)
T ss_dssp             EEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE
T ss_pred             EEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCcc
Confidence            9999997654   22346777764221 11111 11222347899999999985   666 89999987653211000  


Q ss_pred             CCCCceEE----EEe----eccccccccccccCCCccceeeeeeccccCCCCCcccccceeeec-------------CCC
Q psy12422        126 DDTGRTTT----QMS----TLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIM-------------PPD  184 (356)
Q Consensus       126 ~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~  184 (356)
                      ...+....    ...    .+ +.|.|.+.+......                    ....+.+             ...
T Consensus       175 ~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~--------------------~~~~i~~~~~~~~~~~~~~~~~~  233 (444)
T 1igt_B          175 LQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK--------------------VDKKIEPRGPTIKPCPPCKCPAP  233 (444)
T ss_dssp             EETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEE--------------------EEEECCCCCCSCCCCCCCSCCCS
T ss_pred             ccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcc--------------------eEEEeccCCCCcccCCccccCCc
Confidence            00010000    000    12 445555443322210                    0111110             001


Q ss_pred             CCCCCCee-cccCCcee-ecCCCeEEEEEEEcCCC----CCeEEEEECCEEccCCCcee-EEEeC----CEEEEEEccCC
Q psy12422        185 TAMTPPQF-ANKLTDKT-IDDGQCLDLSAVVKGDP----EPRVSWTKNGQPLNSSNILD-LKYKN----GVASLQIQEVF  253 (356)
Q Consensus       185 ~~~~~p~~-~~~~~~~~-v~~g~~~~l~C~~~g~p----~p~i~W~~~g~~~~~~~~~~-~~~~~----~~~~L~i~~v~  253 (356)
                      ....+|.+ ..++.... +.+|+++.|.|.+.|.|    .+.|.|+++|..+....... ....+    ..+.|.|.+++
T Consensus       234 ~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  313 (444)
T 1igt_B          234 NLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQD  313 (444)
T ss_dssp             CCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHH
T ss_pred             ccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHH
Confidence            11235554 33333333 58999999999998874    35899999998876432211 11111    23589999999


Q ss_pred             CCCCeEEEEEEEcCCCce
Q psy12422        254 PEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~g~~  271 (356)
                      .+|+|.|+|.|.|..+..
T Consensus       314 ~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          314 WMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             HHTTCEEEEEEECTTCSS
T ss_pred             hccCCcEEEEEEcCCCCC
Confidence            999999999999998876

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.96  E-value=2.2e-27  Score=197.35  Aligned_cols=167  Identities=27%  Similarity=0.441  Sum_probs=143.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|.|.+.+.|+|+|..+... .+......+...|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+ 
T Consensus       114 g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~-  192 (284)
T 2rik_A          114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP-  192 (284)
T ss_dssp             TCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECC-
T ss_pred             CceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecC-
Confidence            788999999999999999999999998754 344555666779999999999999999999999998888888877532 


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (284)
T 2rik_A          193 --------------------------------------------------------------------------------  192 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEE
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK  239 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~  239 (356)
                                                    |.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+....++.+.
T Consensus       193 ------------------------------p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~  242 (284)
T 2rik_A          193 ------------------------------PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM  242 (284)
T ss_dssp             ------------------------------CBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEE
T ss_pred             ------------------------------CcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEE
Confidence                                          22222334456788999999999999999999999999999988888777


Q ss_pred             EeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       240 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ..+....|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus       243 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  281 (284)
T 2rik_A          243 SENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT  281 (284)
T ss_dssp             EETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEE
Confidence            777778999999999999999999999999998888775

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.96  E-value=1e-27  Score=190.46  Aligned_cols=190  Identities=18%  Similarity=0.272  Sum_probs=140.9

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      ++.+.|.|.+.+. |.+.|+|||+|.++... ++.+...++...|.|.+++.+|+|.|+|.+.|..|.....+.|.|...
T Consensus        17 ~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~   96 (212)
T 2r15_A           17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAY   96 (212)
T ss_dssp             SSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHH
T ss_pred             CceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeec
Confidence            3556777777664 68899999999999764 455556667778999999999999999999999888777666665432


Q ss_pred             ccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ..............                                                                  
T Consensus        97 ~~~~~~~~~~~~~~------------------------------------------------------------------  110 (212)
T 2r15_A           97 DEAYAEFQRLKQAA------------------------------------------------------------------  110 (212)
T ss_dssp             HHHHHHHHHHHHHH------------------------------------------------------------------
T ss_pred             cchhhhccccCccc------------------------------------------------------------------
Confidence            11110000000000                                                                  


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~  238 (356)
                                          +..    ...++.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+....++.+
T Consensus       111 --------------------~~~----~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~  166 (212)
T 2r15_A          111 --------------------IAE----KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNL  166 (212)
T ss_dssp             --------------------HHH----HHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEE
T ss_pred             --------------------ccc----cCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEE
Confidence                                000    01223333345567899999999999999999999999999999988777766


Q ss_pred             EEe-CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        239 KYK-NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       239 ~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      ... +....|.|.+++.+|+|.|+|.|.|..|.....+.|.+.
T Consensus       167 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          167 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             EEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            665 567899999999999999999999999999888877643

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=1.1e-28  Score=209.71  Aligned_cols=250  Identities=15%  Similarity=0.150  Sum_probs=164.5

Q ss_pred             CCceEEEEEeccC----CCCeeEEeeCC--EE-------------c-cc--CCeeEE-ecCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGSTK----PPPTVKWYKGN--RE-------------L-SK--RDYSMS-YSDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~g~----p~~~v~W~k~g--~~-------------l-~~--~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      |++++|.|.+.+.    |.+.+.|+|++  ..             + ..  .++... ...+..+|.|.+++.+|+|.|+
T Consensus        29 G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~  108 (331)
T 3u83_A           29 GTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYI  108 (331)
T ss_dssp             TCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSCCGGGCEEEE
T ss_pred             cCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcccCcccCcEEE
Confidence            7899999999776    45579999954  21             1 11  121111 1223457999999999999999


Q ss_pred             EE-EEeCCceeEEEEEEEEeccccchhhhhhcccccccC---ccceeeec-cc--CCceeeecccccccCCcccc-CCCC
Q psy12422         58 CV-ATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSG---DRKYIEKH-IR--PAPAIITTRQEIKSSYSSHT-DDTG  129 (356)
Q Consensus        58 C~-a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g---~~~~l~c~-~~--p~p~i~w~~~~~~~~~~~~~-~~~~  129 (356)
                      |. +.+..|.....+.|.|...+............+.+|   +.+.|.|. ..  |.|.+.|+++.......... ....
T Consensus       109 C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~  188 (331)
T 3u83_A          109 CEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG  188 (331)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTS
T ss_pred             EEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCC
Confidence            98 566678888889999987655433333344456777   77999997 43  88899999853222111111 1111


Q ss_pred             ceEE--E------EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecc-cCCcee
Q psy12422        130 RTTT--Q------MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFAN-KLTDKT  200 (356)
Q Consensus       130 ~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~  200 (356)
                      ....  .      ...+.+.|.|.+.+...                    .......+.+     ..+|.+.. .+....
T Consensus       189 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~--------------------~~~~~~~l~V-----~~~P~~~~~~~~~~~  243 (331)
T 3u83_A          189 TVTVISRYRLVPSREAHQQSLACIVNYHMD--------------------RFKESLTLNV-----QYEPEVTIEGFDGNW  243 (331)
T ss_dssp             CEEEEEEEEECCCGGGTTCEEEEEEEETTE--------------------EEEEEEECCE-----EEEEEEEEECCCSCC
T ss_pred             cEEEEEEEEEEeccccCCCEEEEEEecCCC--------------------cceeeEEEEE-----ecCCeEEEecCCCce
Confidence            1110  0      12334555555432211                    1112222333     33455543 334556


Q ss_pred             ecCCCeEEEEEEEcCCCCCe-EEEEECCEEccCCCceeEEEeCCEEEEEEc-cCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        201 IDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNILDLKYKNGVASLQIQ-EVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       201 v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~-~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.+|+.+.|.|.+.|+|.|. +.|++++..+....    ...++  +|.|. +++.+|+|.|+|.|.|..|.....+.|.
T Consensus       244 ~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~----~~~~~--~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  317 (331)
T 3u83_A          244 YLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV----EAQNR--TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVN  317 (331)
T ss_dssp             BTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE----EEETT--EEEECSCCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc----eecCc--EEEEeCCCccccCeEEEEEEEeccccceEEEEEE
Confidence            88999999999999999998 99999998876542    22333  79999 9999999999999999999999888887


Q ss_pred             cCC
Q psy12422        279 PLN  281 (356)
Q Consensus       279 p~~  281 (356)
                      +..
T Consensus       318 V~~  320 (331)
T 3u83_A          318 ITE  320 (331)
T ss_dssp             CBC
T ss_pred             Eec
Confidence            543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.96  E-value=4.3e-29  Score=218.34  Aligned_cols=246  Identities=14%  Similarity=0.104  Sum_probs=152.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC----eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE-EEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN-CVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~----~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~v   75 (356)
                      |+.+.|.|.+.|.|.|.|+|+|++..+....    ..+.....  .     ++..|+|.|+|.|.|..|..... +.|.|
T Consensus       154 ~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~--~-----l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V  226 (423)
T 3qs7_E          154 ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK--V-----LHELFGTDIRCCARNELGRECTRLFTIDL  226 (423)
T ss_dssp             SSSSCEEEEEEESSCCEEEEEEC-------------CEEECCS--E-----ECCCCSSCEEEEEECSSCEEEEECEEEES
T ss_pred             CCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccce--E-----EecccCeEEEEEEEcCCCCcceeeEEEEE
Confidence            4678899999999999999999988664211    00111111  1     16789999999999999987553 66666


Q ss_pred             eccccchhhhhhcccccccCccceeeeccc---CCceeeecccccccCCcccc----CCCCceEEEEeeccccccccccc
Q psy12422         76 ESEEESKEQQELAHNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHT----DDTGRTTTQMSTLSSNYSSSTNN  148 (356)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  148 (356)
                      ...+..+    .....+.+|+.+.|.|.+.   |.|.+.|++++..+......    ....+....       ...+...
T Consensus       227 ~~~p~~~----~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~-------~~~L~I~  295 (423)
T 3qs7_E          227 NQTPQTT----LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIR-------ILFAFVS  295 (423)
T ss_dssp             SSCCCSS----TTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEE-------EEEEEES
T ss_pred             ecCCccC----CCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEE-------EEEEEEe
Confidence            5543321    2355678999999999986   45779999988765332100    000000000       0011122


Q ss_pred             cCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC--CceeecCCCeEEEEEEEcCCCCCeEEEEEC
Q psy12422        149 ATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL--TDKTIDDGQCLDLSAVVKGDPEPRVSWTKN  226 (356)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~  226 (356)
                      .....+.+.|.|.+.+.       ......|.+     ..+|.+...+  ....+.+|+++.|.|.+.|+|.|.|.|+|+
T Consensus       296 ~v~~~D~G~Y~C~A~N~-------~~~~~~L~V-----~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~  363 (423)
T 3qs7_E          296 SVARNDTGYYTCSSSKH-------PSQSALVTI-----VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFS  363 (423)
T ss_dssp             SCCTTTCEEEEEEETTE-------EEEEEEEEE-----ESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEET
T ss_pred             ecCHHHCEEEEEEEecC-------CCceEEEEE-----EeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEEC
Confidence            23333444444433222       223334444     3445554433  456788999999999999999999999999


Q ss_pred             CEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        227 GQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       227 g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      |..+.......    .....+.+.....+|+|.|+|.|.|..|....++.|...
T Consensus       364 g~~l~~~~~~~----~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~  413 (423)
T 3qs7_E          364 RKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR  413 (423)
T ss_dssp             TEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--
T ss_pred             CEECCCccccc----cCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence            99986543100    001122235667799999999999999999999998744

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.96  E-value=1.9e-27  Score=186.56  Aligned_cols=171  Identities=22%  Similarity=0.349  Sum_probs=141.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.+.|.+.+.|+|+|..+... ++.....++..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|...+
T Consensus        22 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p  101 (197)
T 3lcy_A           22 GEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATP  101 (197)
T ss_dssp             TSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCC
Confidence            789999999999999999999999998754 4555566667799999999999999999999999988888888876432


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                      ....                                                                            
T Consensus       102 ~~~~----------------------------------------------------------------------------  105 (197)
T 3lcy_A          102 QFHP----------------------------------------------------------------------------  105 (197)
T ss_dssp             EECT----------------------------------------------------------------------------
T ss_pred             CCCC----------------------------------------------------------------------------
Confidence            1100                                                                            


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEE
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK  239 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~  239 (356)
                                                 .     ........+.+|+.+.|.|.+.|+|.|.+.|++++..+.....+...
T Consensus       106 ---------------------------~-----~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~  153 (197)
T 3lcy_A          106 ---------------------------G-----YPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIE  153 (197)
T ss_dssp             ---------------------------T-----SCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEE
T ss_pred             ---------------------------C-----ccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEE
Confidence                                       0     00112345778999999999999999999999999999888877777


Q ss_pred             EeCCEEEEEEccCCC-CCCeEEEEEEEcCCCceEEEEEEec
Q psy12422        240 YKNGVASLQIQEVFP-EDEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       240 ~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      .......|.|.++.. +|+|.|+|.|.|..|.....+.|.+
T Consensus       154 ~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  194 (197)
T 3lcy_A          154 NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI  194 (197)
T ss_dssp             ECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEE
Confidence            777778999999995 8999999999999999988887754

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.96  E-value=4.4e-27  Score=186.80  Aligned_cols=171  Identities=26%  Similarity=0.457  Sum_probs=136.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc--CCeeEE-ecCCeEEEEEeeCCC-CCCeEEEEEEEeCCce-eEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK--RDYSMS-YSDGVVSMEIIDCKP-EDSGEYKCVATNKHGT-DETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~--~~~~~~-~~~~~~~L~i~~~~~-~D~G~Y~C~a~n~~g~-~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.+.|+|+|+|..+..  .++... ..++...|.|.+++. +|+|.|+|.+.|..|. ....+.|.|
T Consensus        21 G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V  100 (212)
T 2yd1_A           21 GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI  100 (212)
T ss_dssp             TSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEE
T ss_pred             CCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEE
Confidence            78999999999999999999999999962  344433 346667999999999 9999999999999888 677788887


Q ss_pred             eccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccc
Q psy12422         76 ESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKK  155 (356)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (356)
                      ...+..+                                                                         
T Consensus       101 ~~~~~~~-------------------------------------------------------------------------  107 (212)
T 2yd1_A          101 YEGDKTP-------------------------------------------------------------------------  107 (212)
T ss_dssp             ECTTCSC-------------------------------------------------------------------------
T ss_pred             ecccCCC-------------------------------------------------------------------------
Confidence            6431100                                                                         


Q ss_pred             eeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCc
Q psy12422        156 ITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI  235 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~  235 (356)
                                                     ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+.....
T Consensus       108 -------------------------------~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~  156 (212)
T 2yd1_A          108 -------------------------------AGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNP  156 (212)
T ss_dssp             -------------------------------TTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTST
T ss_pred             -------------------------------CCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCC
Confidence                                           2235555555667788999999999999999999999999999876432


Q ss_pred             eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE-EEEe
Q psy12422        236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLT  278 (356)
Q Consensus       236 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~  278 (356)
                      .. ....+  .|.|.+++.+|+|.|+|.|.|..|..... +.|.
T Consensus       157 ~~-~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~  197 (212)
T 2yd1_A          157 RY-SLKDG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLY  197 (212)
T ss_dssp             TE-EEETT--EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             eE-EccCC--eEEEccCChhhCEEEEEEeecCCCceeEEEEEEE
Confidence            22 23344  89999999999999999999999988754 4554

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=2e-28  Score=213.33  Aligned_cols=247  Identities=20%  Similarity=0.266  Sum_probs=166.5

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCC---EEccc----CCeeEEecCCeEEEEEeeCCCCCCe---EEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGN---RELSK----RDYSMSYSDGVVSMEIIDCKPEDSG---EYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g---~~l~~----~~~~~~~~~~~~~L~i~~~~~~D~G---~Y~C~a~n~~g~~~~   69 (356)
                      |+++.|.|.+ .+.|.+.|+|+|+|   .+...    ........++  .|.|.+++.+|+|   .|+|.|.|..|....
T Consensus       115 G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~  192 (395)
T 1bih_A          115 GRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV  192 (395)
T ss_dssp             TEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS--CEEEEEECGGGCCSSEEEEEEEECTTCSSCE
T ss_pred             CCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCC--cEEEEEEeeccCCCceEEEEEEEecccceEE
Confidence            7889999996 88999999999986   22221    2222333444  6999999999999   999999999887654


Q ss_pred             EEEEEEec---cccc------hhhhhhcccccccCccceeeeccc--CCceeeecccccccCCccccC------CCCceE
Q psy12422         70 NCVVIVES---EEES------KEQQELAHNFLYSGDRKYIEKHIR--PAPAIITTRQEIKSSYSSHTD------DTGRTT  132 (356)
Q Consensus        70 ~~~l~v~~---~~~~------~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i~w~~~~~~~~~~~~~~------~~~~~~  132 (356)
                      ........   ....      .+........+.+|+.+.|.|.+.  |.|.+.|++++..+.......      ..+...
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L  272 (395)
T 1bih_A          193 VLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL  272 (395)
T ss_dssp             EEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEE
T ss_pred             EeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceE
Confidence            43322211   1000      011112344578999999999986  777899999876653321100      000001


Q ss_pred             EE---EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCc-eeecCCCeEE
Q psy12422        133 TQ---MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTD-KTIDDGQCLD  208 (356)
Q Consensus       133 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~~~  208 (356)
                      ..   ...+.|.|.|.+.+..                   .........+.+     ..+|.+...+.. ..+.+|+.+.
T Consensus       273 ~i~~~~~~d~G~Y~C~a~n~~-------------------g~~~~~~~~l~V-----~~~P~~~~~~~~~~~~~~g~~~~  328 (395)
T 1bih_A          273 LFKTTLPEDEGVYTCEVDNGV-------------------GKPQKHSLKLTV-----VSAPKYEQKPEKVIVVKQGQDVT  328 (395)
T ss_dssp             EESSCCGGGCEEEEEEECCSS-------------------SSCEEEEEEEEE-----EEEEEEEECCCSEEEECTTSCEE
T ss_pred             EEccCChhhCEEEEEEEEeCC-------------------CCceEEEEEEEE-----EcCCccccCCCcceEecCCCeEE
Confidence            11   1223344444432221                   111122334444     456777766665 7899999999


Q ss_pred             EEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        209 LSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       209 l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |.|.+.|+|.|.+.|+++|..+... ++  ...++  .|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus       329 l~C~~~g~p~p~v~W~~~g~~~~~~-~~--~~~~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~  393 (395)
T 1bih_A          329 IPCKVTGLPAPNVVWSHNAKPLSGG-RA--TVTDS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ  393 (395)
T ss_dssp             EECEEEEESCCCCEEEETTEECCSS-SE--EEETT--EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEECcccCCeeEEEECCEECCCC-ce--EEECC--EEEEeeCCcccCEEEEEEEEccCCCceEEEEEE
Confidence            9999999999999999999998754 33  33344  899999999999999999999999998888775

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=199.43  Aligned_cols=251  Identities=13%  Similarity=0.135  Sum_probs=165.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE   80 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~   80 (356)
                      |+++.|.|.+.+.    |+|++++..    .+..........|.|.+++.+|+|.|+|.+.|..|..+..+.|.|.+++.
T Consensus        19 G~~v~L~C~~~~~----v~W~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~   90 (292)
T 4dkd_C           19 GATVTLRCVGNGS----VEWDGPPSP----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPAR   90 (292)
T ss_dssp             TCCEEEEEECSSC----CCBCCCCCS----SCEECCBTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSC
T ss_pred             CCcEEEEEcCCCc----eEEccCCCC----ceEEeccCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccc
Confidence            7899999999874    999986543    22333444556999999999999999999999888888888999987654


Q ss_pred             chhhhhhcccccccCccceeeeccc-CC--ceeeecccccccCCccc-cCC-CCceE---EEEeeccccccccccccCCC
Q psy12422         81 SKEQQELAHNFLYSGDRKYIEKHIR-PA--PAIITTRQEIKSSYSSH-TDD-TGRTT---TQMSTLSSNYSSSTNNATSP  152 (356)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~c~~~-p~--p~i~w~~~~~~~~~~~~-~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~  152 (356)
                      .+. .......+.+|+.+.|.|.+. |.  +.+.|++++........ ... .....   .....+.+.|.|...+.   
T Consensus        91 ~~~-~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~---  166 (292)
T 4dkd_C           91 PWN-VLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMG---  166 (292)
T ss_dssp             CEE-ESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECST---
T ss_pred             ccc-ccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeC---
Confidence            322 223345678999999999987 44  67999987544332111 000 00000   11223334444443221   


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC-CeEEEEECCEEcc
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE-PRVSWTKNGQPLN  231 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~~g~~~~  231 (356)
                                      .....+....+.+... ...+|.+...+....+.+|+.+.|.|.+.+.|+ +.+.|++++..+.
T Consensus       167 ----------------~~~~~s~~~~l~V~~~-~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~  229 (292)
T 4dkd_C          167 ----------------GRKVMSISIRLKVQKV-IPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLA  229 (292)
T ss_dssp             ----------------TSCEECCCEEEEEECC-CCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCC
T ss_pred             ----------------CCceeEEEEEEEEeCC-CCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccc
Confidence                            1112222334444211 123788887777777889999999999988775 4588999988765


Q ss_pred             CCCceeEEEe--CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        232 SSNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       232 ~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      ..........  .....|.|.+++.+|+|.|+|.|.|..|....++.|.+.
T Consensus       230 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  280 (292)
T 4dkd_C          230 IPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV  280 (292)
T ss_dssp             CCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred             cCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEe
Confidence            4433221111  123589999999999999999999999999998888744

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.95  E-value=3.5e-26  Score=179.13  Aligned_cols=161  Identities=22%  Similarity=0.359  Sum_probs=126.8

Q ss_pred             CCceEEEEEec-cCCCCeeEEeeCCEEcccC---CeeEEecCC-------eEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGS-TKPPPTVKWYKGNRELSKR---DYSMSYSDG-------VVSMEIIDCKPEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~---~~~~~~~~~-------~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |+++.|.|.+. |.|.+.|+|+|||..+...   ++.+.....       ...|.|.+++.+|+|.|+|.+.|..|....
T Consensus        17 G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   96 (195)
T 2c5d_C           17 GLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS   96 (195)
T ss_dssp             TCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEEEC
T ss_pred             CCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCceec
Confidence            78999999998 9999999999999999765   223332222       468999999999999999999998766433


Q ss_pred             E-EEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccc
Q psy12422         70 N-CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNN  148 (356)
Q Consensus        70 ~-~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (356)
                      . +.|.|.                                                                        
T Consensus        97 ~~~~l~V~------------------------------------------------------------------------  104 (195)
T 2c5d_C           97 QPGYVGLE------------------------------------------------------------------------  104 (195)
T ss_dssp             CCEEEEEC------------------------------------------------------------------------
T ss_pred             ccEEEEEe------------------------------------------------------------------------
Confidence            3 555553                                                                        


Q ss_pred             cCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECC
Q psy12422        149 ATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNG  227 (356)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g  227 (356)
                                                             .+|.+...+....+.+|+.+.|.|.+.|+|.| .+.|+++|
T Consensus       105 ---------------------------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~  145 (195)
T 2c5d_C          105 ---------------------------------------GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDA  145 (195)
T ss_dssp             ---------------------------------------CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESS
T ss_pred             ---------------------------------------cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECC
Confidence                                                   22444444555678899999999999999999 99999999


Q ss_pred             EEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE-EEEEEec
Q psy12422        228 QPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE-TKCKLTP  279 (356)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~p  279 (356)
                      ..+......     .....|.|.+++  |+|.|+|.|.|..|... ..+.|.+
T Consensus       146 ~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          146 VPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             CBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            988765432     334689999998  89999999999999876 5666654

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.95  E-value=6.1e-26  Score=202.26  Aligned_cols=268  Identities=15%  Similarity=0.142  Sum_probs=147.0

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEcc------------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NRELS------------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l~------------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.+.+  .+.+.|||+  |+.+.                  ..++....  .++..+|+|.+++.+|+|.|
T Consensus        16 G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   95 (475)
T 1iga_A           16 GASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVY   95 (475)
T ss_pred             CCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCChhhCEEE
Confidence            79999999998765  578999995  32110                  11222222  23557899999999999999


Q ss_pred             EEEEEeCCce------eEEEEEEEEeccc-cchhhhhhcccccccCccceeeeccc---CC-c-eeeecccccccCCccc
Q psy12422         57 KCVATNKHGT------DETNCVVIVESEE-ESKEQQELAHNFLYSGDRKYIEKHIR---PA-P-AIITTRQEIKSSYSSH  124 (356)
Q Consensus        57 ~C~a~n~~g~------~~~~~~l~v~~~~-~~~~~~~~~~~~~~~g~~~~l~c~~~---p~-p-~i~w~~~~~~~~~~~~  124 (356)
                      .|.+.|..|.      ....+.|.|.... ..+.........+.+|+.+.|.|.+.   |. | .+.|++++........
T Consensus        96 ~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~  175 (475)
T 1iga_A           96 YCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNF  175 (475)
T ss_pred             EEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeC
Confidence            9999998652      2344577776421 11211111122236899999999996   44 4 8999887643211100


Q ss_pred             c----CCCCceEE----E----EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeee-cCCCCCCCCCe
Q psy12422        125 T----DDTGRTTT----Q----MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELI-MPPDTAMTPPQ  191 (356)
Q Consensus       125 ~----~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~  191 (356)
                      .    ..++....    .    ...+.+.|.|.+.+...........+....   ..   ......+. ..... ..+|.
T Consensus       176 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~---~~---~~~~~~~~~~~~~~-~~~p~  248 (475)
T 1iga_A          176 PPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPS---TP---PTPSPSTPPTPSPS-CCHPR  248 (475)
T ss_pred             CceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEeccccc---Cc---ccccccccccCCCC-CCCcE
Confidence            0    01111100    0    012345666665444321100100000000   00   00000000 00000 12444


Q ss_pred             e-cccCCceeecCCCeEEEEEEEcCCCC---CeEEEEECCEEccCCCc-eeEEE-eC---CEEEEEEccCCCCCCeEEEE
Q psy12422        192 F-ANKLTDKTIDDGQCLDLSAVVKGDPE---PRVSWTKNGQPLNSSNI-LDLKY-KN---GVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       192 ~-~~~~~~~~v~~g~~~~l~C~~~g~p~---p~i~W~~~g~~~~~~~~-~~~~~-~~---~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      + ...+....+.+|+++.|.|.+.|.++   +.|+| + +..+..... ..... ++   ..+.|.|.+++.+|+|.|+|
T Consensus       249 v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C  326 (475)
T 1iga_A          249 LSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTC  326 (475)
T ss_pred             EEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEE
Confidence            4 33344444689999999999998755   68999 4 433322111 11111 11   23579999999999999999


Q ss_pred             EEEcCCCceEEEEEE
Q psy12422        263 TATNSLGTAETKCKL  277 (356)
Q Consensus       263 ~a~n~~g~~~~~~~l  277 (356)
                      .|.|..|.......+
T Consensus       327 ~a~n~~~~~~~~~~v  341 (475)
T 1iga_A          327 TAAYPESKTPLTATL  341 (475)
T ss_pred             EEEcCCCCCceEEEe
Confidence            999999875443333

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=3.3e-27  Score=199.31  Aligned_cols=252  Identities=12%  Similarity=0.078  Sum_probs=150.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCC-----ceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH-----GTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~-----g~~~~~~~l~v   75 (356)
                      |++|+|.|.+.+. .+.+.|+|+|..+.....   .......|.|.+++.+|+|.|+|.|.|..     +..+..+.|.|
T Consensus        38 G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V  113 (316)
T 3vh8_G           38 GGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH---GRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMV  113 (316)
T ss_dssp             TSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH---HCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEE
T ss_pred             CCCEEEEEEccCC-CceEEEEeCCCccceeec---CCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEE
Confidence            7899999999887 688999999987653210   11122379999999999999999998632     23445677877


Q ss_pred             eccccchhhhhhcccccccCccceeeeccc-CCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcc
Q psy12422         76 ESEEESKEQQELAHNFLYSGDRKYIEKHIR-PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSK  154 (356)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~-p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (356)
                      ......+.....+...+.+|+.+.|.|.+. +.+.+.|++++............        .......-+........+
T Consensus       114 ~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~--------~~~~~~~~L~i~~v~~~D  185 (316)
T 3vh8_G          114 TGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQI--------HDGVSKANFSIGPMMLAL  185 (316)
T ss_dssp             ECSSCCCEEEEESCSEEETTCCEEEEEEESSCCSEEEEEETTCCSCCEEEECEE--------ETTEEEEEEEECSCCGGG
T ss_pred             ecCCCCCeEEecCCCccCCCCeEEEEEcCCCCCcEEEEEECCCccccceeeeee--------cCCCceEEEEECCCChhh
Confidence            665433333333344578999999999997 55678999887665322111000        000000001111122333


Q ss_pred             ceeeeeeccccCCCC-CcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC
Q psy12422        155 KITRRMNSILDTDSP-SRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS  233 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~  233 (356)
                      .+.|.|......+.. ....+....+.+..  ...+|.+...+.. .+.+|+.++|.|.+. .|.+.+.|+|+|..+...
T Consensus       186 ~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~--~~~~p~i~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~  261 (316)
T 3vh8_G          186 AGTYRCYGSVTHTPYQLSAPSDPLDIVVTG--PYEKPSLSAQPGP-KVQAGESVTLSCSSR-SSYDMYHLSREGGAHERR  261 (316)
T ss_dssp             CEEEEEEEECTTCTTBCCCCCCCEEEEEEC--SSCCCEEEEESCS-CCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEE
T ss_pred             CceEEEEEecCCCCccccCCCCCEEEEecC--CCCCCeEEeCCCC-eecCCCcEEEEEECC-CCCcEEEEEECCCcCCCc
Confidence            333333333222211 11112333343321  2456666665543 678999999999997 478899999999776532


Q ss_pred             CceeEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        234 NILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       234 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ........ .....|.|.+++  |+|.|+|.|.|..+.
T Consensus       262 ~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          262 LPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             EECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             eeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence            11111111 123689999999  999999999998764

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.95  E-value=7.9e-27  Score=207.04  Aligned_cols=259  Identities=14%  Similarity=0.157  Sum_probs=142.4

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEE---c-c--------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NRE---L-S--------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~---l-~--------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++++|.|.+.+.|  .+.+.|||+  |..   + .              ..++....  .++..+|+|.+++.+|+|.|
T Consensus        15 G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   94 (457)
T 1hzh_H           15 GASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVY   94 (457)
T ss_dssp             TCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCcccCEEE
Confidence            79999999998876  678999994  321   1 0              12333322  24567999999999999999


Q ss_pred             EEEEEeCCc------------eeEEEEEEEEeccccchhh--hhhcccccccCccceeeeccc---CC-ceeeecccccc
Q psy12422         57 KCVATNKHG------------TDETNCVVIVESEEESKEQ--QELAHNFLYSGDRKYIEKHIR---PA-PAIITTRQEIK  118 (356)
Q Consensus        57 ~C~a~n~~g------------~~~~~~~l~v~~~~~~~~~--~~~~~~~~~~g~~~~l~c~~~---p~-p~i~w~~~~~~  118 (356)
                      +|.+.|..|            .....+.|.|......++.  ...+...+.+|+.+.|.|.+.   |. +.+.|++++..
T Consensus        95 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~  174 (457)
T 1hzh_H           95 YCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  174 (457)
T ss_dssp             EEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBC
T ss_pred             EEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEe
Confidence            999999865            2234456777652211111  111223467899999999987   43 67999998754


Q ss_pred             cCCcc---ccCCCCceE----EE----EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCC-CCC
Q psy12422        119 SSYSS---HTDDTGRTT----TQ----MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPP-DTA  186 (356)
Q Consensus       119 ~~~~~---~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  186 (356)
                      .....   ....++...    ..    ...+ +.|.|.+.+......   .... .....     ......+.+.+ ...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~---~~~~-v~~~~-----~~~~~~~~~~~~~~~  244 (457)
T 1hzh_H          175 SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK---VDKK-AEPKS-----CDKTHTCPPCPAPEL  244 (457)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEE---EEEE-CCCCC-----SCSSCSCCSCCCCCC
T ss_pred             ccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcc---eeEE-ecccC-----CCcccccCCCCCccc
Confidence            32110   001111100    00    0112 555555543221100   0000 00000     00000000000 001


Q ss_pred             CCCCee-cccCCcee-ecCCCeEEEEEEEcCCCCC----eEEEEECCEEccCCCcee-EEEeCCEEEEEEc---cCCCCC
Q psy12422        187 MTPPQF-ANKLTDKT-IDDGQCLDLSAVVKGDPEP----RVSWTKNGQPLNSSNILD-LKYKNGVASLQIQ---EVFPED  256 (356)
Q Consensus       187 ~~~p~~-~~~~~~~~-v~~g~~~~l~C~~~g~p~p----~i~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~---~v~~~d  256 (356)
                      ..+|.+ ...+.... +.+|+.+.|.|.+.|.|++    .|.|+++|..+....... ....++  .|.+.   .+...|
T Consensus       245 ~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g--~~~~~~~l~i~~~d  322 (457)
T 1hzh_H          245 LGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNS--TYRVVSVLTVLHQD  322 (457)
T ss_dssp             SSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTS--CEEEEEEECCCHHH
T ss_pred             cCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCC--cEEEEEEEEECHHH
Confidence            234554 33333322 6789999999999998653    899999998875432111 111222  22222   234555


Q ss_pred             ---CeEEEEEEEcCCCce
Q psy12422        257 ---EGVYVCTATNSLGTA  271 (356)
Q Consensus       257 ---~G~Y~C~a~n~~g~~  271 (356)
                         +|.|+|.|.|..+..
T Consensus       323 ~~d~G~Y~C~a~n~~~~~  340 (457)
T 1hzh_H          323 WLNGKEYKCKVSNKALPA  340 (457)
T ss_dssp             HHHTCCEEEEEECTTSSS
T ss_pred             ccCCCcEEEEEeCCCCCC
Confidence               999999999876654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.94  E-value=3.8e-26  Score=185.14  Aligned_cols=176  Identities=24%  Similarity=0.375  Sum_probs=133.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCe--eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.+.|+|+|+|..+.....  ......+..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|...
T Consensus        30 G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~  109 (241)
T 3grw_A           30 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER  109 (241)
T ss_dssp             TSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEecc
Confidence            78999999999999999999999999864321  1222333348999999999999999999999998888888877642


Q ss_pred             ccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ..                                                                              
T Consensus       110 ~~------------------------------------------------------------------------------  111 (241)
T 3grw_A          110 SP------------------------------------------------------------------------------  111 (241)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEE----CCEEccCCC
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK----NGQPLNSSN  234 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~----~g~~~~~~~  234 (356)
                                                  ..++.+...+....+.+|+.+.|.|.+.|+|.|.+.|++    +|..+....
T Consensus       112 ----------------------------~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~  163 (241)
T 3grw_A          112 ----------------------------HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDG  163 (241)
T ss_dssp             ----------------------------CCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTT
T ss_pred             ----------------------------CCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCC
Confidence                                        011112222345678889999999999999999999999    888776554


Q ss_pred             ceeEEE--------eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCC
Q psy12422        235 ILDLKY--------KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNS  282 (356)
Q Consensus       235 ~~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~  282 (356)
                      ......        ......|.|.+++.+|+|.|+|.|.|..|....++.|.+..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  219 (241)
T 3grw_A          164 TPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP  219 (241)
T ss_dssp             CCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---
T ss_pred             ceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCC
Confidence            322211        112468999999999999999999999999999988884433

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.94  E-value=6.1e-26  Score=177.13  Aligned_cols=164  Identities=19%  Similarity=0.282  Sum_probs=124.1

Q ss_pred             CCceEEEEEeccCC-CCeeEEee-CCEEcccC--CeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCC-ceeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKP-PPTVKWYK-GNRELSKR--DYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKH-GTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p-~~~v~W~k-~g~~l~~~--~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~   74 (356)
                      |+++.|.|.+.+.| .+.+.|+| +|..+...  ++... ...+...|.|.+++.+|+|.|+|.+.|.. +.....+.|.
T Consensus        17 G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~   96 (191)
T 1epf_A           17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK   96 (191)
T ss_dssp             TCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEE
Confidence            78999999998876 78999999 88888632  33322 23566799999999999999999999987 4445555555


Q ss_pred             EeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcc
Q psy12422         75 VESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSK  154 (356)
Q Consensus        75 v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (356)
                      |..                                                                             
T Consensus        97 v~~-----------------------------------------------------------------------------   99 (191)
T 1epf_A           97 IFQ-----------------------------------------------------------------------------   99 (191)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             eec-----------------------------------------------------------------------------
Confidence            532                                                                             


Q ss_pred             ceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC
Q psy12422        155 KITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN  234 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~  234 (356)
                                                        +|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+....
T Consensus       100 ----------------------------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~  145 (191)
T 1epf_A          100 ----------------------------------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK  145 (191)
T ss_dssp             ----------------------------------CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGC
T ss_pred             ----------------------------------CceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccC
Confidence                                              2333333445568899999999999999999999999999986543


Q ss_pred             ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       235 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ...+....+ ..|.|.+++.+|+|.|+|.|.|..+.......
T Consensus       146 ~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  186 (191)
T 1epf_A          146 DVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKD  186 (191)
T ss_dssp             CTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEE
T ss_pred             CceEEEecC-CeEEECCCChhhCEEEEEEEEEecceeEEEEE
Confidence            222222221 27999999999999999999999976554433

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.94  E-value=1.2e-26  Score=181.39  Aligned_cols=162  Identities=28%  Similarity=0.437  Sum_probs=125.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.+.+.|+|+|..+...  ++.....+.  .|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|..
T Consensus        22 G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   99 (192)
T 2iep_A           22 EEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ--LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM   99 (192)
T ss_dssp             TSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGT--EEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEE
T ss_pred             CCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCcc--EEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEe
Confidence            789999999999999999999999998743  333332332  79999999999999999999987773 4455565543


Q ss_pred             cccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcccee
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT  157 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      .                                                                               
T Consensus       100 ~-------------------------------------------------------------------------------  100 (192)
T 2iep_A          100 K-------------------------------------------------------------------------------  100 (192)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             eeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee
Q psy12422        158 RRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~  237 (356)
                                                      |.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+....++.
T Consensus       101 --------------------------------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~  148 (192)
T 2iep_A          101 --------------------------------PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIA  148 (192)
T ss_dssp             --------------------------------EEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEE
T ss_pred             --------------------------------CccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEE
Confidence                                            112222234568889999999999999999999999999988766544


Q ss_pred             EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE-EEEEe
Q psy12422        238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLT  278 (356)
Q Consensus       238 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~  278 (356)
                      ... .  ..|.|.+++.+|+|.|+|.|.|..|.... .+.|.
T Consensus       149 ~~~-~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~  187 (192)
T 2iep_A          149 VLE-S--GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE  187 (192)
T ss_dssp             ECT-T--SCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             Eec-C--CcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEE
Confidence            322 2  27999999999999999999999997743 34443

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.94  E-value=1.4e-25  Score=173.74  Aligned_cols=157  Identities=20%  Similarity=0.325  Sum_probs=122.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCe-eEEecCC--eEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDY-SMSYSDG--VVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~-~~~~~~~--~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.+.+.|+|+|..+..... .....+.  ...|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|.
T Consensus        17 G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~   96 (182)
T 1rhf_A           17 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   96 (182)
T ss_dssp             TCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             CCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEe
Confidence            78999999999999999999999999976532 2222221  4689999999999999999999986643 345555554


Q ss_pred             ccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccce
Q psy12422         77 SEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKI  156 (356)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      .                                                                               
T Consensus        97 ~-------------------------------------------------------------------------------   97 (182)
T 1rhf_A           97 G-------------------------------------------------------------------------------   97 (182)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCc
Q psy12422        157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNI  235 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~  235 (356)
                                                      +|.+...+....+.+|+.+.|.|.+.|+|.| .+.|+++|..+.....
T Consensus        98 --------------------------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~  145 (182)
T 1rhf_A           98 --------------------------------VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP  145 (182)
T ss_dssp             --------------------------------SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE
T ss_pred             --------------------------------CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC
Confidence                                            2344444455678899999999999999999 8999999998865421


Q ss_pred             eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE-EEEE
Q psy12422        236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKL  277 (356)
Q Consensus       236 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l  277 (356)
                             ....|.|.++  +|+|.|+|.|.|..|.... .+.|
T Consensus       146 -------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l  179 (182)
T 1rhf_A          146 -------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATV  179 (182)
T ss_dssp             -------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEE
T ss_pred             -------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEE
Confidence                   3458999998  5899999999999998753 5544

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.94  E-value=1.3e-28  Score=216.99  Aligned_cols=250  Identities=14%  Similarity=0.129  Sum_probs=145.5

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEc----c--------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NREL----S--------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l----~--------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.+.+  .+.|.|||+  |..+    .              ..++.+..  .++..+|.|.+++.+|+|.|
T Consensus        14 G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   93 (434)
T 1igy_B           14 GASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSDDSAVY   93 (434)
T ss_dssp             BCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGGGCSEE
T ss_pred             CCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChHHCEEE
Confidence            78999999998764  678999996  3221    0              11222211  13445899999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEecccc-chhhh-hhcccccccCccceeeeccc---CCc-eeeecccccccCCccc--cCCC
Q psy12422         57 KCVATNKHGTDETNCVVIVESEEE-SKEQQ-ELAHNFLYSGDRKYIEKHIR---PAP-AIITTRQEIKSSYSSH--TDDT  128 (356)
Q Consensus        57 ~C~a~n~~g~~~~~~~l~v~~~~~-~~~~~-~~~~~~~~~g~~~~l~c~~~---p~p-~i~w~~~~~~~~~~~~--~~~~  128 (356)
                      +|.+.|..+.....+.|.|..... .+... ..+...+.+|+.+.|.|.+.   |.| .+.|++++........  ....
T Consensus        94 ~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~  173 (434)
T 1igy_B           94 YCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQS  173 (434)
T ss_dssp             CCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECS
T ss_pred             EEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecC
Confidence            999998654444556777764211 11111 11223357899999999986   555 8999998764321100  0000


Q ss_pred             CceE----EEEe----eccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecC-------C-CCCCCCCee
Q psy12422        129 GRTT----TQMS----TLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMP-------P-DTAMTPPQF  192 (356)
Q Consensus       129 ~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~p~~  192 (356)
                      +...    ....    .+ +.|.|.+.+......                    ....+.+.       . .....+..+
T Consensus       174 ~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~p~v~  232 (434)
T 1igy_B          174 DLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTK--------------------VDKKIVPRDCGCKPCICTVPEVSSVF  232 (434)
T ss_dssp             SCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCC--------------------EEEECCCCCCCCCCCCCCCSSSCCEE
T ss_pred             CcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCcc--------------------ceeeccCCCCCCccccCCCCcCcEEE
Confidence            1100    0000    11 445554433322110                    01111110       0 000112223


Q ss_pred             cccCCcee-ecCCCeEEEEEEEcCCC----CCeEEEEECCEEccCCCceeE-EEeC----CEEEEEEccCCCCCCeEEEE
Q psy12422        193 ANKLTDKT-IDDGQCLDLSAVVKGDP----EPRVSWTKNGQPLNSSNILDL-KYKN----GVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       193 ~~~~~~~~-v~~g~~~~l~C~~~g~p----~p~i~W~~~g~~~~~~~~~~~-~~~~----~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      ...+.... +.+|+.+.|.|.+.|.|    .+.|.|+++|..+........ ...+    ..+.|.|.+++.+|+|.|+|
T Consensus       233 ~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  312 (434)
T 1igy_B          233 IFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKC  312 (434)
T ss_dssp             EECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBC
T ss_pred             EeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEE
Confidence            33333222 88999999999999884    357999999877653221110 0111    12469999999999999999


Q ss_pred             EEEcCCCce
Q psy12422        263 TATNSLGTA  271 (356)
Q Consensus       263 ~a~n~~g~~  271 (356)
                      .|.|..|..
T Consensus       313 ~a~n~~~~~  321 (434)
T 1igy_B          313 RVNSAAFPA  321 (434)
T ss_dssp             CBCCSSCSS
T ss_pred             EEECCCCCC
Confidence            999998854

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.94  E-value=3.7e-26  Score=178.04  Aligned_cols=163  Identities=25%  Similarity=0.450  Sum_probs=120.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE--EEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE--TNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~--~~~~l~v~   76 (356)
                      |+++.|.|.+.+.|.+.+.|+|++..+...  .+.....++  +|.|.+++.+|+|.|+|.+.|..+...  ..+.+.|.
T Consensus        17 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~   94 (189)
T 2v5t_A           17 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN   94 (189)
T ss_dssp             TSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTS--CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCC--CEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEec
Confidence            789999999999999999999999887632  222233344  699999999999999999999865443  23344433


Q ss_pred             ccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccce
Q psy12422         77 SEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKI  156 (356)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      .++                                                                             
T Consensus        95 ~~p-----------------------------------------------------------------------------   97 (189)
T 2v5t_A           95 VPP-----------------------------------------------------------------------------   97 (189)
T ss_dssp             EEE-----------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            221                                                                             


Q ss_pred             eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC--CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC
Q psy12422        157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL--TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN  234 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~  234 (356)
                                                        .+....  ....+.+|+.+.|.|.+.|+|.|.+.|+++|..+....
T Consensus        98 ----------------------------------~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~  143 (189)
T 2v5t_A           98 ----------------------------------AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE  143 (189)
T ss_dssp             ----------------------------------EEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSS
T ss_pred             ----------------------------------CcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCC
Confidence                                              111101  13456789999999999999999999999999998776


Q ss_pred             ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       235 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      .+.....  ...|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus       144 ~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  185 (189)
T 2v5t_A          144 KYILKGS--NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ  185 (189)
T ss_dssp             SEEEETT--TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             cEEEecC--CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEE
Confidence            5544333  34899999999999999999999999988887775

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.94  E-value=6.4e-26  Score=182.51  Aligned_cols=173  Identities=24%  Similarity=0.402  Sum_probs=132.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-e-eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-Y-SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.+.|+|+|+|..+.... . ......+..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|...
T Consensus        34 G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~  113 (231)
T 3ojm_B           34 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVER  113 (231)
T ss_dssp             TSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcC
Confidence            7899999999999999999999999986432 1 1122233348999999999999999999999998888888887643


Q ss_pred             ccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      +.                                                                              
T Consensus       114 ~~------------------------------------------------------------------------------  115 (231)
T 3ojm_B          114 SR------------------------------------------------------------------------------  115 (231)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCee-cccCCceeecCCCeEEEEEEEcCCCCCeEEEEE----CCEEccCC
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQF-ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK----NGQPLNSS  233 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~----~g~~~~~~  233 (356)
                                                   .+|.+ ...+....+.+|+.+.|.|.+.|+|.|.+.|++    +|..+...
T Consensus       116 -----------------------------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~  166 (231)
T 3ojm_B          116 -----------------------------HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPD  166 (231)
T ss_dssp             -----------------------------CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTT
T ss_pred             -----------------------------CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCC
Confidence                                         11212 122345678899999999999999999999999    88777544


Q ss_pred             CceeEEE--e-----CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        234 NILDLKY--K-----NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       234 ~~~~~~~--~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      .......  .     .....|.|.+++.+|+|.|+|.|.|..|.....+.|.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  220 (231)
T 3ojm_B          167 GLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL  220 (231)
T ss_dssp             SCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEe
Confidence            3222111  1     112479999999999999999999999999888888743

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.94  E-value=1e-26  Score=200.22  Aligned_cols=228  Identities=14%  Similarity=0.133  Sum_probs=146.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE   80 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~   80 (356)
                      |+++.|.|.+.+.|.|.|+|+|+|..+.       ..+  ..|.|.+++.+|+|.|+|.|.|..+.....+.|.|...+.
T Consensus       111 G~~v~l~C~~~~~p~~~v~W~~~~~~~~-------~~~--~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~  181 (363)
T 1wio_A          111 GQSLTLTLESPPGSSPSVQCRSPRGKNI-------QGG--KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK  181 (363)
T ss_dssp             BSCEEEEEECCTTCCCCEEEECSSSCEE-------EES--SEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSC
T ss_pred             CCCEEEEEEcCCCCCCeEEEEcCCCccc-------ccc--eEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCC
Confidence            7899999999999999999999976432       122  2899999999999999999999988777777777775443


Q ss_pred             chhhhhhcccccccCccceeeeccc-------CCceeeecccccccCCccccC--CCCceEEEEee--------cccccc
Q psy12422         81 SKEQQELAHNFLYSGDRKYIEKHIR-------PAPAIITTRQEIKSSYSSHTD--DTGRTTTQMST--------LSSNYS  143 (356)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~c~~~-------p~p~i~w~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~~  143 (356)
                      .+     ....+.+|+.+.|.|.+.       |.|.+.|++++..........  ...........        ..+.. 
T Consensus       182 ~~-----~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  255 (363)
T 1wio_A          182 AS-----SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPL-  255 (363)
T ss_dssp             SE-----EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSC-
T ss_pred             CC-----CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCce-
Confidence            22     445578899999999764       367799998776654310000  00000000000        00000 


Q ss_pred             ccccccCCCccceeeeeecccc--CCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCe-
Q psy12422        144 SSTNNATSPSKKITRRMNSILD--TDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-  220 (356)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-  220 (356)
                      .+........+.+.|.|...+.  .+    .......+.+.                  -..|+.+.|.|.+.|.|+|. 
T Consensus       256 ~L~i~~v~~~d~G~Y~C~a~n~~~~g----~~~~~~~l~V~------------------~v~g~~~~l~C~~~g~p~p~~  313 (363)
T 1wio_A          256 HLTLPQALPQYAGSGNLTLALEAKTG----KLHQEVNLVVM------------------RATQLQKNLTCEVWGPTSPKL  313 (363)
T ss_dssp             EEEESSBCGGGCEEEEEEECBTTTTC----CEEEEEEEEEE------------------EECCCSSSEEEEEESSCCTTC
T ss_pred             EEEEccCCcCcCcEEEEEEEEhhhcC----eEEEEEeEEEE------------------EecCCCeeEEEEEccccCCCc
Confidence            1111122223333344433222  11    11222233321                  11288999999999999998 


Q ss_pred             -EEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        221 -VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       221 -i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                       +.|+++|..+...           ..|.|.+++.+|+|.|+|.|.|. |....+..+
T Consensus       314 ~i~W~~~~~~~~~~-----------~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~  359 (363)
T 1wio_A          314 MLSLKLENKEAKVS-----------KREKAVWVLNPEAGMWQCLLSDS-GQVLLESNI  359 (363)
T ss_dssp             CEEEECSSSSCSEE-----------ESSSEEEESSCCSEEEEEEECSS-SSCCEEEEE
T ss_pred             cEEEEeCCCceeee-----------eeeeeeeeccccceeEEEEEecC-CeEEEecce
Confidence             9999999776531           25788999999999999999965 444444443

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.93  E-value=1.8e-24  Score=167.65  Aligned_cols=159  Identities=18%  Similarity=0.318  Sum_probs=121.4

Q ss_pred             CCceEEEEEeccCCCC--eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.+.|.|  .+.|+|+|..+.....    ......|.|.  +.+|+|.|+|.+.|..   ...+.|.|.. 
T Consensus        13 G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~----~~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~l~V~~-   82 (184)
T 3b5h_A           13 GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL----PGQKTEFKVD--SDDQWGEYSCVFLPEP---MGTANIQLHG-   82 (184)
T ss_dssp             TTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC----CCSEEEEEEC--GGGCCEEEEEEEESTT---SCEEEEEECC-
T ss_pred             CCCEEEEEECCCCCCCceEEEEEeCCEEeecccc----cCCcEEEEEe--chhhCeEEEEEEECCc---CcEEEEEEec-
Confidence            7899999999887777  8999999999875431    1223466666  6899999999999832   2344444432 


Q ss_pred             ccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                                                                                                      
T Consensus        83 --------------------------------------------------------------------------------   82 (184)
T 3b5h_A           83 --------------------------------------------------------------------------------   82 (184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCC-CCeEEEEE---CC-EEccCC
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTK---NG-QPLNSS  233 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~---~g-~~~~~~  233 (356)
                                                    +|.+...+....+.+|+.+.|.|.+.|+| .|.+.|++   ++ ..+...
T Consensus        83 ------------------------------~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~  132 (184)
T 3b5h_A           83 ------------------------------PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG  132 (184)
T ss_dssp             ------------------------------SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTT
T ss_pred             ------------------------------CCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecC
Confidence                                          23333333455788999999999999999 79999999   44 444332


Q ss_pred             --CceeEEEeCCEEEEEEccCC-CCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422        234 --NILDLKYKNGVASLQIQEVF-PEDEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       234 --~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                        .++.+...+....|.|.+++ .+|+|.|+|.|.|..|.....+.|.+
T Consensus       133 ~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  181 (184)
T 3b5h_A          133 SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  181 (184)
T ss_dssp             GGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEE
Confidence              45666666777899999999 99999999999999999988887764

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.93  E-value=4.9e-26  Score=200.97  Aligned_cols=272  Identities=15%  Similarity=0.145  Sum_probs=157.1

Q ss_pred             CCceEEEEEecc-CCCC-eeEEeeCCEEcccCC-eeEE---ecCC----eEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGST-KPPP-TVKWYKGNRELSKRD-YSMS---YSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~-~v~W~k~g~~l~~~~-~~~~---~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |+++.|.|.+.| .|.+ .|+|+|||.++.... ....   ..++    ...|.|.+++.+|+|.|+|.|.|..+.....
T Consensus       131 g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  210 (438)
T 1qgc_4          131 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIV  210 (438)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEE
T ss_pred             CCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCcee
Confidence            578999999976 7777 899999999987551 1111   1222    2479999999999999999999988775333


Q ss_pred             EEEEEeccccchhhhhhcccccccCccceeeeccc--C--Cceeeecccc--cccCCccc-----------cCCCCceEE
Q psy12422         71 CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIR--P--APAIITTRQE--IKSSYSSH-----------TDDTGRTTT  133 (356)
Q Consensus        71 ~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p--~p~i~w~~~~--~~~~~~~~-----------~~~~~~~~~  133 (356)
                      .  .+................+.+|+.+.|.|.+.  |  .+.+.|+++.  ........           .....+...
T Consensus       211 ~--~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  288 (438)
T 1qgc_4          211 K--SFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTI  288 (438)
T ss_dssp             E--EEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEE
T ss_pred             c--ccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEE
Confidence            3  33221111111112344588999999999987  3  4579999873  11110000           000111111


Q ss_pred             EEeeccccccccccccCCCccceeeeeeccccCCC-CCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEE
Q psy12422        134 QMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS-PSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAV  212 (356)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~  212 (356)
                      . .........+........+.+.|.|...+.... ..........+.+... ...+|.+...+....+.+|+.++|.|.
T Consensus       289 ~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~-~~~~P~v~~~~~~~~~~~g~~v~L~C~  366 (438)
T 1qgc_4          289 S-RDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAA-KTTPPSVYPLAPGSAAAAASMVTLGCL  366 (438)
T ss_dssp             E-EETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSS-CCBCCEEEEECCCGGGCCSSEEEEEEE
T ss_pred             E-eecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecC-CCCCCeEEEcCcccccccCCcEEEEEE
Confidence            1 000011111122223333334444433321110 0001111223333211 124455544333445778999999999


Q ss_pred             EcCC-CCC-eEEEEECCEEccCCCceeEEEeCCE----EEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        213 VKGD-PEP-RVSWTKNGQPLNSSNILDLKYKNGV----ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       213 ~~g~-p~p-~i~W~~~g~~~~~~~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.|. |.| .|.|+++|..+......... ..+.    +.|.|.++..+| |.|+|.|.|..|.......+.
T Consensus       367 ~~g~~P~~~~v~W~~~g~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~  436 (438)
T 1qgc_4          367 VKGYFPEPVTVTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  436 (438)
T ss_dssp             EESCBSSCCEEEEGGGTCCSSEEECCCEE-ETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred             eccccCCCcEEEEecCCCCCceeecCccc-cCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence            9997 887 89999999876532111111 1221    369999999889 999999999999877766653

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.93  E-value=1.6e-25  Score=178.42  Aligned_cols=165  Identities=28%  Similarity=0.474  Sum_probs=123.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCeE--EEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGVV--SMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~   74 (356)
                      |+++.|.|.+.|.|.+.|+|+|+|..+...   .......++..  .|.|.+++.+|+|.|+|.+.|..|... ..+.|.
T Consensus        24 G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~  103 (217)
T 2vr9_A           24 NEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQ  103 (217)
T ss_dssp             TSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccccccceEE
Confidence            789999999999999999999999998753   23344444433  237889999999999999999888663 245555


Q ss_pred             EeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcc
Q psy12422         75 VESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSK  154 (356)
Q Consensus        75 v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (356)
                      |...                                                                            
T Consensus       104 v~~~----------------------------------------------------------------------------  107 (217)
T 2vr9_A          104 IAVL----------------------------------------------------------------------------  107 (217)
T ss_dssp             ECEE----------------------------------------------------------------------------
T ss_pred             EEEe----------------------------------------------------------------------------
Confidence            5321                                                                            


Q ss_pred             ceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCC
Q psy12422        155 KITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSS  233 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~  233 (356)
                                                        +|.+...+....+.+|+.+.|.|.+ .|+|.|.+.|+++|..+...
T Consensus       108 ----------------------------------~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~  153 (217)
T 2vr9_A          108 ----------------------------------RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDL  153 (217)
T ss_dssp             ----------------------------------CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCC
T ss_pred             ----------------------------------CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcc
Confidence                                              1112222334568899999999999 89999999999999988743


Q ss_pred             C--------ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        234 N--------ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       234 ~--------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      .        +... ...  ..|.|.+++.+|+|.|+|.|.|..|....+..+.
T Consensus       154 ~~~~~~~~~~~~~-~~~--~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~l  203 (217)
T 2vr9_A          154 KAMSFGASSRVRI-VDG--GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKL  203 (217)
T ss_dssp             CCC---CCCSEEE-ETT--TEEEESSCCSTTCEEEEEEEEETTEEEECCCEEE
T ss_pred             cccccccCCcEEe-cCC--CcEEEeeCCHHHCeEEEEEEEcccceeccccEEE
Confidence            2        2211 122  2799999999999999999999999877654443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.93  E-value=5.7e-24  Score=190.80  Aligned_cols=264  Identities=13%  Similarity=0.108  Sum_probs=148.0

Q ss_pred             CCceEEEEEeccCCC----CeeEEeeC--CEEc----c-------------cCCeeEEe--cCCeEEEEEeeCCCCCCeE
Q psy12422          1 MQNVIKVKVGSTKPP----PTVKWYKG--NREL----S-------------KRDYSMSY--SDGVVSMEIIDCKPEDSGE   55 (356)
Q Consensus         1 g~~v~l~C~~~g~p~----~~v~W~k~--g~~l----~-------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~   55 (356)
                      |++++|.|.+.+.+.    +.+.|||+  |+.+    .             ..++....  ..+.++|+|.+++.+|+|.
T Consensus        15 G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~   94 (512)
T 1zvo_C           15 SETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMSAADTAM   94 (512)
T ss_pred             CCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcCCHHHCEE
Confidence            899999999977643    67999995  3211    0             12333222  2346799999999999999


Q ss_pred             EEEEEEeCCc----------e---eEEEEEEEEecccc-chhhhhhcc-cc-cccCccceeeeccc---CCc-eeeeccc
Q psy12422         56 YKCVATNKHG----------T---DETNCVVIVESEEE-SKEQQELAH-NF-LYSGDRKYIEKHIR---PAP-AIITTRQ  115 (356)
Q Consensus        56 Y~C~a~n~~g----------~---~~~~~~l~v~~~~~-~~~~~~~~~-~~-~~~g~~~~l~c~~~---p~p-~i~w~~~  115 (356)
                      |.|.+.+..+          .   ....+.|.|...+. .+....... .. ..+|+.+.|.|.+.   |.| .+.|+++
T Consensus        95 Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p~~v~W~~~  174 (512)
T 1zvo_C           95 YYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMG  174 (512)
T ss_pred             EEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCceEEEEEcC
Confidence            9999988642          1   12345677764321 111111111 11 23568999999986   554 7999986


Q ss_pred             ccccCCcc---ccCCCCc-e----EEEEeec--cccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCC-
Q psy12422        116 EIKSSYSS---HTDDTGR-T----TTQMSTL--SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPD-  184 (356)
Q Consensus       116 ~~~~~~~~---~~~~~~~-~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  184 (356)
                      ........   .....+. .    .......  .+.|.|.+.+...........+   ..    .........+.+++. 
T Consensus       175 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~g~ytC~v~n~~~~~~~~~~~~---~~----~~~~~~~v~l~~pp~~  247 (512)
T 1zvo_C          175 TQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRW---PE----SPKAQASSVPTAQPQA  247 (512)
T ss_pred             cccCceEecCceecCCCCEEEEEEEEEcHHHcCCceEEEEEEeCCCCceEEEecC---CC----CCCcCCEEEEeCCCch
Confidence            54321100   0111111 1    1111111  5778888766554332211000   00    000000111111100 


Q ss_pred             --------------------------------------------CCCCCCee-cccCCceeecCCCeEEEEEEEcCCCCC
Q psy12422        185 --------------------------------------------TAMTPPQF-ANKLTDKTIDDGQCLDLSAVVKGDPEP  219 (356)
Q Consensus       185 --------------------------------------------~~~~~p~~-~~~~~~~~v~~g~~~~l~C~~~g~p~p  219 (356)
                                                                  ....+|.+ ...+....+.+|+.++|.|.+.|++++
T Consensus       248 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~  327 (512)
T 1zvo_C          248 EGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLK  327 (512)
T ss_pred             hccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceECC
Confidence                                                        01234444 334444567789999999999886443


Q ss_pred             --eEEEEECCEEccCCCcee-EE-EeCC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        220 --RVSWTKNGQPLNSSNILD-LK-YKNG----VASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       220 --~i~W~~~g~~~~~~~~~~-~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                        .|+|+++|..+....... .. ..++    .+.|.|..+..+|.|.|+|+|.|..+..
T Consensus       328 ~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~  387 (512)
T 1zvo_C          328 DAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP  387 (512)
T ss_pred             CeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence              799999998865221110 11 1111    2569999999999999999999987743

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.93  E-value=3e-25  Score=186.30  Aligned_cols=167  Identities=24%  Similarity=0.457  Sum_probs=126.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC---eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE-EEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN-CVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.|+|+|+|..+....   ......++  .|.|.+++.+|+|.|+|.|.|..|..... +.+.|.
T Consensus       123 g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~  200 (304)
T 2yd9_A          123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG--ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR  200 (304)
T ss_dssp             TSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTS--CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCe--EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEE
Confidence            7899999999999999999999999986431   22233344  79999999999999999999998876543 455553


Q ss_pred             ccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccce
Q psy12422         77 SEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKI  156 (356)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      ..                                                                              
T Consensus       201 ~~------------------------------------------------------------------------------  202 (304)
T 2yd9_A          201 VQ------------------------------------------------------------------------------  202 (304)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ee------------------------------------------------------------------------------
Confidence            21                                                                              


Q ss_pred             eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCce
Q psy12422        157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL  236 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~  236 (356)
                                                    ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+......
T Consensus       203 ------------------------------~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~  252 (304)
T 2yd9_A          203 ------------------------------NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM  252 (304)
T ss_dssp             ------------------------------CEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSC
T ss_pred             ------------------------------ccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccc
Confidence                                          12233433444456889999999999999999999999999998765432


Q ss_pred             eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCC
Q psy12422        237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSS  283 (356)
Q Consensus       237 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~  283 (356)
                      .    .+...|.|.++  +|+|.|+|.|.|..|....++.|.+...+
T Consensus       253 ~----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  293 (304)
T 2yd9_A          253 P----VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP  293 (304)
T ss_dssp             C----BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred             c----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence            2    34456777766  69999999999999999999988755443

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.93  E-value=1.7e-25  Score=175.30  Aligned_cols=159  Identities=13%  Similarity=0.089  Sum_probs=105.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE--EEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE--TNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~--~~~~l~v~~~   78 (356)
                      |++|+|.|.+.+.|. .+.|||+|..+...............|.|.+++.+|+|.|+|.|.|..|...  ..+.|.|...
T Consensus        19 G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~   97 (196)
T 2d3v_A           19 GNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGF   97 (196)
T ss_dssp             TCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECS
T ss_pred             CCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCC
Confidence            799999999988866 9999999988753211111234456899999999999999999999876432  3455555431


Q ss_pred             ccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                                                                                                      
T Consensus        98 --------------------------------------------------------------------------------   97 (196)
T 2d3v_A           98 --------------------------------------------------------------------------------   97 (196)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~  238 (356)
                                                  ..+|.+...+ ...+.+|++++|.|.+.+.| +.+.|+|+|..+........
T Consensus        98 ----------------------------~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~  147 (196)
T 2d3v_A           98 ----------------------------YNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQ  147 (196)
T ss_dssp             ----------------------------SCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECE
T ss_pred             ----------------------------CCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccc
Confidence                                        1123333222 23678899999999999998 89999999987753211111


Q ss_pred             EE--eCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        239 KY--KNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       239 ~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ..  ......|.|.+++.+|+|.|+|.|.|..+.
T Consensus       148 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          148 LTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             ECTTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred             cccCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence            11  112368999999999999999999998653

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=175.86  Aligned_cols=158  Identities=11%  Similarity=0.140  Sum_probs=115.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCce--eEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT--DETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~--~~~~~~l~v~~~   78 (356)
                      |++|+|.|.+.+ |.+.+.|+|+|..+...............|.|.+++.+|+|.|+|.|.|..|.  .+..+.|.|.+.
T Consensus        19 G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~   97 (196)
T 3p2t_A           19 GNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGA   97 (196)
T ss_dssp             TCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECS
T ss_pred             CCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCC
Confidence            789999999988 77899999999887643221222244568999999999999999999999873  244455655432


Q ss_pred             ccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                                                                                                      
T Consensus        98 --------------------------------------------------------------------------------   97 (196)
T 3p2t_A           98 --------------------------------------------------------------------------------   97 (196)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee-
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD-  237 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~-  237 (356)
                                                  ..+|.+...+.. .+.+|+.++|.|.+.+ +++.+.|+|+|..+....... 
T Consensus        98 ----------------------------~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~  147 (196)
T 3p2t_A           98 ----------------------------YSKPTLSALPSP-LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSE  147 (196)
T ss_dssp             ----------------------------SCCCEEEEESCS-EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEE
T ss_pred             ----------------------------CCCCEEEeCCcc-eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeeccc
Confidence                                        122333333332 5789999999999987 456899999998775433221 


Q ss_pred             EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       238 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      .........|.|.+++.+|+|.|+|.|.|..+
T Consensus       148 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          148 HGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             ccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            11223346899999999999999999999886

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.93  E-value=7.4e-25  Score=172.56  Aligned_cols=164  Identities=15%  Similarity=0.117  Sum_probs=120.6

Q ss_pred             CCceEEEEEeccCCC-----CeeEEee-CCEEcccCCeeEEecC----CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGSTKPP-----PTVKWYK-GNRELSKRDYSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-----~~v~W~k-~g~~l~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |+++.|.|.+.+.|.     +.+.|+| ++.......+.....+    +..+|.|.+++.+|+|.|+|.+.|..+.....
T Consensus        17 G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~   96 (202)
T 3bp6_B           17 GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKY   96 (202)
T ss_dssp             TSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcceEE
Confidence            789999999999887     8899999 4443332222222222    56799999999999999999999999888888


Q ss_pred             EEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccC
Q psy12422         71 CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNAT  150 (356)
Q Consensus        71 ~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      +.|.|...+.                                                                      
T Consensus        97 ~~l~V~~~~~----------------------------------------------------------------------  106 (202)
T 3bp6_B           97 LTVKVKASYM----------------------------------------------------------------------  106 (202)
T ss_dssp             EEEEEEBCCC----------------------------------------------------------------------
T ss_pred             EEEEecCCCC----------------------------------------------------------------------
Confidence            8887764310                                                                      


Q ss_pred             CCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc
Q psy12422        151 SPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~  230 (356)
                                                            .|.+..    ..+.+|+.+.|.|.+.|+|.|.+.|++++..+
T Consensus       107 --------------------------------------~p~~~~----~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~  144 (202)
T 3bp6_B          107 --------------------------------------RIDTRI----LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPA  144 (202)
T ss_dssp             --------------------------------------CEEEEE----EECTTTCCEEEEEEEEEBSCCEEEETTCCSCC
T ss_pred             --------------------------------------cccEEE----EecCCCCeEEEEEEccccCCceEEEEeCCCCc
Confidence                                                  111110    13456999999999999999999999987654


Q ss_pred             cCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        231 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       231 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ..  ......++....+.|.+++.+|+|.|+|.|.|..|.....+.+.
T Consensus       145 ~~--~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~  190 (202)
T 3bp6_B          145 NT--SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIID  190 (202)
T ss_dssp             EE--EEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEEC
T ss_pred             cC--ceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEE
Confidence            31  11111223345778889999999999999999999999888886

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.93  E-value=2e-25  Score=177.16  Aligned_cols=170  Identities=27%  Similarity=0.461  Sum_probs=124.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-----eeEEecCCeE---EEEEeeCCCCCCeEEEEEEEeCCcee-EEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-----YSMSYSDGVV---SMEIIDCKPEDSGEYKCVATNKHGTD-ETNC   71 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-----~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~   71 (356)
                      |+++.|.|.+.|.|.+.++|||+|..+....     ......++..   .|.|.+++.+|+|.|+|.+.|..|.. ...+
T Consensus        24 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~  103 (212)
T 2v9r_A           24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDA  103 (212)
T ss_dssp             TCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEECCCE
T ss_pred             CCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceeecce
Confidence            7899999999999999999999999986432     2233344422   34556779999999999999988765 3345


Q ss_pred             EEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCC
Q psy12422         72 VVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATS  151 (356)
Q Consensus        72 ~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (356)
                      .|.|...                                                                         
T Consensus       104 ~l~V~~~-------------------------------------------------------------------------  110 (212)
T 2v9r_A          104 SLEVAIL-------------------------------------------------------------------------  110 (212)
T ss_dssp             EEEECEE-------------------------------------------------------------------------
T ss_pred             EEEEEec-------------------------------------------------------------------------
Confidence            5555421                                                                         


Q ss_pred             CccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEc
Q psy12422        152 PSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPL  230 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~  230 (356)
                                                           ++.+...+....+.+|+.+.|.|.+ .|+|.|.+.|+++|..+
T Consensus       111 -------------------------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l  153 (212)
T 2v9r_A          111 -------------------------------------RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL  153 (212)
T ss_dssp             -------------------------------------CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEE
T ss_pred             -------------------------------------cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccC
Confidence                                                 1112222334568899999999999 89999999999999998


Q ss_pred             cCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE-EEEecCCCC
Q psy12422        231 NSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTPLNSS  283 (356)
Q Consensus       231 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~p~~~~  283 (356)
                      ....... ...++  .|.|.+++.+|+|.|+|.|.|..|..... +.|.+...|
T Consensus       154 ~~~~~~~-~~~~~--~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P  204 (212)
T 2v9r_A          154 DDKDERI-TIRGG--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP  204 (212)
T ss_dssp             CTTSTTE-EEETT--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CCCcceE-EccCC--eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCc
Confidence            7654322 22333  89999999999999999999999986553 566544333

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.93  E-value=6.9e-26  Score=191.76  Aligned_cols=249  Identities=14%  Similarity=0.151  Sum_probs=145.2

Q ss_pred             CCceEEEEEeccC-C-CCeeEEeeCCEEcccCCe--eEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422          1 MQNVIKVKVGSTK-P-PPTVKWYKGNRELSKRDY--SMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKHGTDETNCV   72 (356)
Q Consensus         1 g~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~--~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   72 (356)
                      |+++.|.|.+.|. | .+.|+|+|||+++.....  .....++.+    .|.|.++..+|+|.|+|.|.|..+.....+.
T Consensus        24 ~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  103 (323)
T 2wqr_A           24 PPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTK  103 (323)
T ss_dssp             CSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEEC
T ss_pred             CCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeee
Confidence            3699999999875 4 478999999999875421  112224432    5788888888999999999998876554433


Q ss_pred             EEEeccccchhh--hhhcccccccCccceeeeccc---CCc---eeeecccccccCCcccc----CCCCceE----EE--
Q psy12422         73 VIVESEEESKEQ--QELAHNFLYSGDRKYIEKHIR---PAP---AIITTRQEIKSSYSSHT----DDTGRTT----TQ--  134 (356)
Q Consensus        73 l~v~~~~~~~~~--~~~~~~~~~~g~~~~l~c~~~---p~p---~i~w~~~~~~~~~~~~~----~~~~~~~----~~--  134 (356)
                      +.+......+..  .......+.+|+.+.|.|.+.   |.|   .+.|++++.........    ...+...    ..  
T Consensus       104 ~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~  183 (323)
T 2wqr_A          104 KCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVG  183 (323)
T ss_dssp             CCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECC
T ss_pred             cCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEEC
Confidence            211111111110  111122367899999999976   445   79999976443221100    0111100    00  


Q ss_pred             --EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEE
Q psy12422        135 --MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAV  212 (356)
Q Consensus       135 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~  212 (356)
                        ...+.+.|.|.+.+...                    .......+... .....+|.+...+.......|+.++|.|.
T Consensus       184 ~~~~~D~G~Y~C~a~n~~~--------------------~~~~~~~v~~~-~~~~~~P~v~~~~~~~~~~~g~~~~l~C~  242 (323)
T 2wqr_A          184 TRDWIEGETYQCRVTHPHL--------------------PRALMRSTTKT-SGPRAAPEVYAFATPEWPGSRDKRTLACL  242 (323)
T ss_dssp             HHHHHTTCCEEEEEECTTS--------------------SSCEEEEECCC-CSCCBCCEEEEEECCCCTTCTTEEEEEEE
T ss_pred             HHHccCCCCEEEEEECCCC--------------------CCCeeeEEEcc-CCCCCCCEEEEeCCChHHhcCCcEEEEEE
Confidence              11223445555432210                    01112222111 01134566544332222234999999999


Q ss_pred             EcC-CCCC-eEEEEECCEEccCCCcee---EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        213 VKG-DPEP-RVSWTKNGQPLNSSNILD---LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       213 ~~g-~p~p-~i~W~~~g~~~~~~~~~~---~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      +.| +|++ .|.|++||..+.......   ....++    .+.|.|..+..+|+|.|+|.|.|....
T Consensus       243 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          243 IQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             eeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            988 4443 799999999886542110   011111    257999999999999999999999887

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.93  E-value=2.1e-25  Score=175.08  Aligned_cols=158  Identities=14%  Similarity=0.136  Sum_probs=108.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCC-ce--eEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH-GT--DETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~-g~--~~~~~~l~v~~   77 (356)
                      |++|+|.|.+.+.|. .++|+|+|..+...............|.|.+++.+|+|.|+|.|.|.. |.  .+..+.|.|.+
T Consensus        19 G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~   97 (198)
T 1ugn_A           19 GSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTG   97 (198)
T ss_dssp             TCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEEC
T ss_pred             CCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcc
Confidence            789999999988876 799999998874211001111122379999999999999999999987 52  24445666643


Q ss_pred             cccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcccee
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT  157 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      .                                                                               
T Consensus        98 ~-------------------------------------------------------------------------------   98 (198)
T 1ugn_A           98 A-------------------------------------------------------------------------------   98 (198)
T ss_dssp             S-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             eeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee
Q psy12422        158 RRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~  237 (356)
                                                   ..+|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+.......
T Consensus        99 -----------------------------~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~  147 (198)
T 1ugn_A           99 -----------------------------YIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNS  147 (198)
T ss_dssp             -----------------------------SCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC
T ss_pred             -----------------------------ccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccc
Confidence                                         1123332222 2467899999999999988 78999999998775332111


Q ss_pred             -EE-EeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        238 -LK-YKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       238 -~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                       .. .......|.|.+++.+|+|.|+|.|.|..+
T Consensus       148 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          148 QPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             ------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence             11 122357899999999999999999999876

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.5e-24  Score=172.82  Aligned_cols=165  Identities=22%  Similarity=0.288  Sum_probs=127.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|.|.+.|+|||+|..+....        ...|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|...+
T Consensus        33 G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~  104 (218)
T 3k0w_A           33 GQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIP  104 (218)
T ss_dssp             TSBEEEECEETTTTSSEEEEEETTEECTTCC--------SSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCC
T ss_pred             CCcEEEEeeecCCCCCEEEEEECCEECCCCC--------CCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccC
Confidence            7899999999999999999999999886432        2379999999999999999999987755 445677776432


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                      ......                                                                          
T Consensus       105 ~~~~~~--------------------------------------------------------------------------  110 (218)
T 3k0w_A          105 ESFQRS--------------------------------------------------------------------------  110 (218)
T ss_dssp             GGGCTT--------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            110000                                                                          


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEE
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK  239 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~  239 (356)
                                            .......+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+.....    
T Consensus       111 ----------------------~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~----  164 (218)
T 3k0w_A          111 ----------------------VDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK----  164 (218)
T ss_dssp             ----------------------CCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS----
T ss_pred             ----------------------cccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC----
Confidence                                  000002345666666777899999999999999999999999999998875432    


Q ss_pred             EeCCEEEEEEccCCCCCCeEEEEEEEcCCCc-eEEEEEEe
Q psy12422        240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGT-AETKCKLT  278 (356)
Q Consensus       240 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~  278 (356)
                           ..|.|.+++.+|+|.|+|.|.|..|. ....+.|.
T Consensus       165 -----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~  199 (218)
T 3k0w_A          165 -----KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII  199 (218)
T ss_dssp             -----SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEE
T ss_pred             -----CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEE
Confidence                 37999999999999999999999887 33344444

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.93  E-value=7.2e-25  Score=174.01  Aligned_cols=172  Identities=16%  Similarity=0.139  Sum_probs=115.7

Q ss_pred             CceEEEEEeccCCCCeeEEee---CCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE-EEEEEec
Q psy12422          2 QNVIKVKVGSTKPPPTVKWYK---GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN-CVVIVES   77 (356)
Q Consensus         2 ~~v~l~C~~~g~p~~~v~W~k---~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~v~~   77 (356)
                      ++++|.|.+.+ |.+.++|+|   ||..+..........++  .|.|.+++.+|+|.|+|.|.|..+...+. +.|.|..
T Consensus        25 ~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~--~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~  101 (213)
T 2x1w_L           25 KTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKK--GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVG  101 (213)
T ss_dssp             CEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTT--EEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECB
T ss_pred             ccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCc--cEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeC
Confidence            89999999976 789999998   47777654322222333  69999999999999999998854333222 4444421


Q ss_pred             cccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCcccee
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKIT  157 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      .                                                                               
T Consensus       102 ~-------------------------------------------------------------------------------  102 (213)
T 2x1w_L          102 Y-------------------------------------------------------------------------------  102 (213)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             eeeeccccCCCCCcccccceeeecCCCCCCCCCeecc-cCCceeecCCCeEEEEEEEcCCCC--CeEEEEECCEEccCCC
Q psy12422        158 RRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFAN-KLTDKTIDDGQCLDLSAVVKGDPE--PRVSWTKNGQPLNSSN  234 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~g~~~~~~~  234 (356)
                                                    .+|.+.. .+..+.+.+|++++|.|.+.|.|.  +.+.|+++|..+....
T Consensus       103 ------------------------------~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~  152 (213)
T 2x1w_L          103 ------------------------------RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKK  152 (213)
T ss_dssp             ------------------------------CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEE
T ss_pred             ------------------------------cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEE
Confidence                                          0111111 123347889999999999998654  5799999887654321


Q ss_pred             c-eeEEE-------eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCcc
Q psy12422        235 I-LDLKY-------KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI  285 (356)
Q Consensus       235 ~-~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~  285 (356)
                      . .....       ....++|.|.+++.+|+|.|+|.|.|..|.....+.|.+...+.|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          153 LVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred             EeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence            1 00000       112357999999999999999999999999999988886655543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.93  E-value=4.4e-25  Score=175.41  Aligned_cols=166  Identities=16%  Similarity=0.315  Sum_probs=121.6

Q ss_pred             CCceEEEEEeccCC----CCeeEEee----------------CCEEccc------CCeeEEe---cCCeEEEEEeeCCCC
Q psy12422          1 MQNVIKVKVGSTKP----PPTVKWYK----------------GNRELSK------RDYSMSY---SDGVVSMEIIDCKPE   51 (356)
Q Consensus         1 g~~v~l~C~~~g~p----~~~v~W~k----------------~g~~l~~------~~~~~~~---~~~~~~L~i~~~~~~   51 (356)
                      |+++.|.|.+.+.|    .+.|.|+|                +|..+..      .+.....   ..+..+|.|.+++.+
T Consensus        15 G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~   94 (214)
T 3jz7_A           15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLS   94 (214)
T ss_dssp             TSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEECSCCGG
T ss_pred             CCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEccCChh
Confidence            78999999998877    46999998                4444431      1211111   124558999999999


Q ss_pred             CCeEEEEEEEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCce
Q psy12422         52 DSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRT  131 (356)
Q Consensus        52 D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~  131 (356)
                      |+|.|+|.+.|..|.....+.|.|..++..                                                  
T Consensus        95 D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~--------------------------------------------------  124 (214)
T 3jz7_A           95 DIGTYQCKVKKAPGVANKKFLLTVLVKPSG--------------------------------------------------  124 (214)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEECCCBS--------------------------------------------------
T ss_pred             hCeEEEEEEEeCCCccccEEEEEEEcCCCC--------------------------------------------------
Confidence            999999999999998888888888643110                                                  


Q ss_pred             EEEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEE
Q psy12422        132 TTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSA  211 (356)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C  211 (356)
                                                                                   ...+....+.+|+.+.|.|
T Consensus       125 -------------------------------------------------------------~~~~~~~~~~~g~~v~l~C  143 (214)
T 3jz7_A          125 -------------------------------------------------------------TRCFVDGSEEIGNDFKLKC  143 (214)
T ss_dssp             -------------------------------------------------------------CEEEEESCCBTTCCEEEEE
T ss_pred             -------------------------------------------------------------ceeeeecceecCCcEEEEe
Confidence                                                                         0001112367899999999


Q ss_pred             EE-cCCCCCeEEEEECC--EEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCC
Q psy12422        212 VV-KGDPEPRVSWTKNG--QPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLN  281 (356)
Q Consensus       212 ~~-~g~p~p~i~W~~~g--~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~  281 (356)
                      .+ .|+|.|.+.|++++  ..+.....  ..  .....|.|.+++.+|+|.|+|.|.|..|....++.|.+..
T Consensus       144 ~~~~g~p~~~v~W~~~~~~~~~~~~~~--~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  212 (214)
T 3jz7_A          144 EPKEGSLPLQFEWQKLSDSQTMPTPWL--AE--MTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP  212 (214)
T ss_dssp             ECSBCCSSCEEEEEECSTTCCCCGGGG--GG--TTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             cCCCCCCCCEEEEEECCCCCccCccce--ec--cCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence            99 89999999999954  33332211  11  1223899999999999999999999999999988887553

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.93  E-value=3.8e-25  Score=174.02  Aligned_cols=168  Identities=21%  Similarity=0.340  Sum_probs=124.4

Q ss_pred             CCceEEEEE-eccCCC-CeeEEeeCCEEccc---CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE---EE
Q psy12422          1 MQNVIKVKV-GSTKPP-PTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN---CV   72 (356)
Q Consensus         1 g~~v~l~C~-~~g~p~-~~v~W~k~g~~l~~---~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~---~~   72 (356)
                      |+++.|.|. +.+.|. +.++|+|++..+..   ........+  ..|.|.+++.+|+|.|+|.+.|..+.....   +.
T Consensus        23 G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~  100 (201)
T 3s97_C           23 GKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN--GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIP  100 (201)
T ss_dssp             TCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTT--CCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEE
T ss_pred             CCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCC--CeEEECcCCcccCeEEEEEEEecCCCcchhhcccc
Confidence            789999999 889998 99999999988742   222222223  379999999999999999999976554431   22


Q ss_pred             EEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCC
Q psy12422         73 VIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSP  152 (356)
Q Consensus        73 l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (356)
                      +.+....                                                                         
T Consensus       101 ~~~~~~~-------------------------------------------------------------------------  107 (201)
T 3s97_C          101 LIPIPER-------------------------------------------------------------------------  107 (201)
T ss_dssp             EEEECCS-------------------------------------------------------------------------
T ss_pred             eeecccc-------------------------------------------------------------------------
Confidence            2221100                                                                         


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS  232 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~  232 (356)
                                                     .....+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+..
T Consensus       108 -------------------------------~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~  156 (201)
T 3s97_C          108 -------------------------------TTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPS  156 (201)
T ss_dssp             -------------------------------SCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCT
T ss_pred             -------------------------------ccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCC
Confidence                                           0002234444444467789999999999999999999999999987764


Q ss_pred             CCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        233 SNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       233 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ..  .....  ...|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus       157 ~~--~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  198 (201)
T 3s97_C          157 TA--EISTS--GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY  198 (201)
T ss_dssp             TC--EEETT--TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ce--eecCC--CCEEEEccCChhhCEEEEEEEEecCCceeeeEEEE
Confidence            42  22222  34899999999999999999999999988887775

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=3.4e-25  Score=175.83  Aligned_cols=158  Identities=21%  Similarity=0.305  Sum_probs=116.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcc-----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc--ee
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELS-----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG--TD   67 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~-----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g--~~   67 (356)
                      |+++.|.|.+.+.|.+.+.|+|++..+.           .........+  ..|.|.+++.+|+|.|+|.+.|..|  ..
T Consensus        16 G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~   93 (212)
T 1f97_A           16 NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS--SGITFSSVTRKDNGEYTCMVSEEGGQNYG   93 (212)
T ss_dssp             TCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET--TEEEESCCCGGGCEEEEEEEEETTSSSEE
T ss_pred             CCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec--eeEEEcccCcccCeEEEEEEEccCCCccc
Confidence            7899999999999999999999876531           1011122223  3899999999999999999999876  44


Q ss_pred             EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecccccccccc
Q psy12422         68 ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTN  147 (356)
Q Consensus        68 ~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (356)
                      ...+.|.|..++.                                                                   
T Consensus        94 ~~~~~l~V~~~p~-------------------------------------------------------------------  106 (212)
T 1f97_A           94 EVSIHLTVLVPPS-------------------------------------------------------------------  106 (212)
T ss_dssp             EEEEEEEEEBCCC-------------------------------------------------------------------
T ss_pred             EEEEEEEEEcCCC-------------------------------------------------------------------
Confidence            5666666653211                                                                   


Q ss_pred             ccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEE-EcCCCCCeEEEEEC
Q psy12422        148 NATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAV-VKGDPEPRVSWTKN  226 (356)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~-~~g~p~p~i~W~~~  226 (356)
                                                                  +...+....+.+|+.+.|.|. +.++|.|.+.|+++
T Consensus       107 --------------------------------------------~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~  142 (212)
T 1f97_A          107 --------------------------------------------KPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKD  142 (212)
T ss_dssp             --------------------------------------------CCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEET
T ss_pred             --------------------------------------------CcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeC
Confidence                                                        111111235788999999999 79999999999999


Q ss_pred             CE-EccCCCce-------eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        227 GQ-PLNSSNIL-------DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       227 g~-~~~~~~~~-------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      +. .+......       ..........|.|.+++.+|+|.|+|.|.|..|..
T Consensus       143 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          143 GISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA  195 (212)
T ss_dssp             TEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             CcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCc
Confidence            98 77654321       22233334589999999999999999999999987

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.92  E-value=2.6e-25  Score=189.20  Aligned_cols=173  Identities=24%  Similarity=0.392  Sum_probs=132.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCe--eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.+.|.|+|+|..+.....  ......+..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...
T Consensus       138 g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  217 (334)
T 1ry7_B          138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER  217 (334)
T ss_dssp             TCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecC
Confidence            78899999999999999999999998875421  1223334458999999999999999999999998888888888643


Q ss_pred             ccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      +.                                                                              
T Consensus       218 ~~------------------------------------------------------------------------------  219 (334)
T 1ry7_B          218 SP------------------------------------------------------------------------------  219 (334)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCeecc-cCCceeecCCCeEEEEEEEcCCCCCeEEEEE----CCEEccCC
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFAN-KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK----NGQPLNSS  233 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~----~g~~~~~~  233 (356)
                                                   .+|.+.. .+....+.+|+.+.|.|.+.|+|.|.+.|++    +|..+...
T Consensus       220 -----------------------------~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~  270 (334)
T 1ry7_B          220 -----------------------------HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD  270 (334)
T ss_dssp             -----------------------------SSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTT
T ss_pred             -----------------------------CCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCC
Confidence                                         1121211 2345678899999999999999999999999    67766543


Q ss_pred             CceeEE--E-------eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        234 NILDLK--Y-------KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       234 ~~~~~~--~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      ......  .       ......|.|.+++.+|+|.|+|.|.|..|....++.|.+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  326 (334)
T 1ry7_B          271 GTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL  326 (334)
T ss_dssp             SSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEE
T ss_pred             CCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEE
Confidence            321111  1       1112479999999999999999999999999998888744

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.92  E-value=4.7e-25  Score=183.86  Aligned_cols=166  Identities=25%  Similarity=0.422  Sum_probs=125.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE--EEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE--TNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~--~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|..+...  .......++  .|.|.+++.+|+|.|+|.|.|..+...  ..+.|.|.
T Consensus       115 g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~  192 (291)
T 1qz1_A          115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN  192 (291)
T ss_dssp             TSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTS--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEE
T ss_pred             CCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCC--cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEe
Confidence            789999999999999999999999887532  222233444  799999999999999999999754432  33444443


Q ss_pred             ccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccce
Q psy12422         77 SEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKI  156 (356)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      .++                                                                             
T Consensus       193 ~~p-----------------------------------------------------------------------------  195 (291)
T 1qz1_A          193 VPP-----------------------------------------------------------------------------  195 (291)
T ss_dssp             EEE-----------------------------------------------------------------------------
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            221                                                                             


Q ss_pred             eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecc--cCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC
Q psy12422        157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFAN--KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN  234 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~  234 (356)
                                                        .+..  .+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+....
T Consensus       196 ----------------------------------~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~  241 (291)
T 1qz1_A          196 ----------------------------------TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE  241 (291)
T ss_dssp             ----------------------------------EEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC-
T ss_pred             ----------------------------------cccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCC
Confidence                                              1111  1123467789999999999999999999999999987654


Q ss_pred             c--eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422        235 I--LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       235 ~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      .  ..+........|.|.+++.+|+|.|+|.|.|..|.....+.|.+
T Consensus       242 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  288 (291)
T 1qz1_A          242 EDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV  288 (291)
T ss_dssp             -CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEE
Confidence            1  12333344458999999999999999999999999988888764

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.92  E-value=7e-24  Score=167.74  Aligned_cols=158  Identities=22%  Similarity=0.340  Sum_probs=119.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-------------------CeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-------------------DYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-------------------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |+++.|.|...+.|.+.+.|||++......                   .+.....++  +|.|.+++.+|+|.|+|.+.
T Consensus        14 G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~--~L~i~~v~~~D~G~Y~C~~~   91 (208)
T 3r4d_A           14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG--SLLFQMITMKDMGVYTLDMT   91 (208)
T ss_dssp             TCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTS--CEEECSCCGGGCEEEEEEEE
T ss_pred             CCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCC--eEEEccccccCCeEEEEEEE
Confidence            799999999988899999999975432211                   111122223  69999999999999999999


Q ss_pred             eCC-ceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccc
Q psy12422         62 NKH-GTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSS  140 (356)
Q Consensus        62 n~~-g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (356)
                      |.. +.....+.|.|..+                                                              
T Consensus        92 ~~~~~~~~~~~~l~V~~~--------------------------------------------------------------  109 (208)
T 3r4d_A           92 DENYRRTQATVRFHVHQP--------------------------------------------------------------  109 (208)
T ss_dssp             CSSCEEEEEEEEEEEECC--------------------------------------------------------------
T ss_pred             cccCceeEEEEEEEeccC--------------------------------------------------------------
Confidence            984 55566666766532                                                              


Q ss_pred             cccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCe
Q psy12422        141 NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR  220 (356)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~  220 (356)
                                                                    ...|.+......  +.+|+.+.|.|.+.+.| |.
T Consensus       110 ----------------------------------------------~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~  140 (208)
T 3r4d_A          110 ----------------------------------------------VTQPFLQVTNTT--VKELDSVTLTCLSNDIG-AN  140 (208)
T ss_dssp             ----------------------------------------------CCCCEEEESCSS--CCTTCCEEEEEECSCTT-CE
T ss_pred             ----------------------------------------------CCCCEEecCCce--EeeCCCEEEEEECCCCC-Cc
Confidence                                                          112333322222  77899999999999866 79


Q ss_pred             EEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        221 VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       221 i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      +.|+++|..+....++.....+  .+|.|.+++.+|+|.|+|.|.|..|....
T Consensus       141 i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s  191 (208)
T 3r4d_A          141 IQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRRS  191 (208)
T ss_dssp             EEEEETTEECCCCSSEEEETTT--TEEEESSCCGGGCEEEEEEEECTTCCEEC
T ss_pred             eEEEECCEeCCCCCCeEEcCCC--CEEEEeccCHHhCeEEEEEEecCCCcccC
Confidence            9999999999877666554333  48999999999999999999999998665

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.92  E-value=1.4e-24  Score=185.27  Aligned_cols=263  Identities=16%  Similarity=0.172  Sum_probs=148.4

Q ss_pred             CCceEEEEEeccC--CCCeeEEeeC--CEEcc------------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTK--PPPTVKWYKG--NRELS------------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~--p~~~v~W~k~--g~~l~------------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++++|.|.+.+.  |.+.|.|||+  |..+.                  ..++.+..  ..+..+|+|.+++.+|+|.|
T Consensus        15 G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   94 (344)
T 1za6_B           15 GASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDTAVY   94 (344)
T ss_dssp             TCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcccCEEE
Confidence            7899999999876  3678999996  43220                  12333332  24567999999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEeccc-cchhhh-hhcccccccCccceeeeccc---CC-ceeeecccccccCCcc---ccCC
Q psy12422         57 KCVATNKHGTDETNCVVIVESEE-ESKEQQ-ELAHNFLYSGDRKYIEKHIR---PA-PAIITTRQEIKSSYSS---HTDD  127 (356)
Q Consensus        57 ~C~a~n~~g~~~~~~~l~v~~~~-~~~~~~-~~~~~~~~~g~~~~l~c~~~---p~-p~i~w~~~~~~~~~~~---~~~~  127 (356)
                      .|.+.|..+.....+.|.|...+ ..+... ..+...+.+|+.+.|.|.+.   |. +.+.|++++.......   ....
T Consensus        95 ~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~  174 (344)
T 1za6_B           95 FCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQS  174 (344)
T ss_dssp             EEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECT
T ss_pred             EEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECC
Confidence            99999966555556778887422 111111 11223467999999999986   54 6899999876532110   0111


Q ss_pred             CCceE----EEEee---ccccccccccccCCCcccee-eeee------ccccCCCCCcccccceeeecCCCCCCCCCeec
Q psy12422        128 TGRTT----TQMST---LSSNYSSSTNNATSPSKKIT-RRMN------SILDTDSPSRSRSTTKELIMPPDTAMTPPQFA  193 (356)
Q Consensus       128 ~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  193 (356)
                      .+...    .....   ..+.|.|.+.+......... ....      .+..+.       ....+.. ......+|.+.
T Consensus       175 ~~~~~~~s~L~i~~~~~~dG~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~l~~-~~~~~~~P~v~  246 (344)
T 1za6_B          175 SGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCG-------GGSSGGG-SGGQPREPQVY  246 (344)
T ss_dssp             TSCEEEEEEEEEETTHHHHBCEEEEEEEGGGTEEEEEEECCCCC----------------------------CCBCCEEE
T ss_pred             CCCEEEEEEEEEcHHHcCCCcEEEEEEeCCCCccceEeecccccccccccCCCC-------CCccccc-cCCCCcCCEEE
Confidence            11110    11110   12677777654432210000 0000      000000       0000000 00113456655


Q ss_pred             ccCCceeecCCCeEEEEEEEcCC-C-CCeEEEEECCEEccCCCceeEEEe-CC----EEEEEEccCCCCCCeEEEEEEEc
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGD-P-EPRVSWTKNGQPLNSSNILDLKYK-NG----VASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~-p-~p~i~W~~~g~~~~~~~~~~~~~~-~~----~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+......+|+.++|.|.+.|+ | .+.+.|++||..+........... ++    .+.|.|.....+|.|.|+|.|.|
T Consensus       247 ~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~  326 (344)
T 1za6_B          247 TLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMH  326 (344)
T ss_dssp             EECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEEC
T ss_pred             EeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEc
Confidence            43322223356679999999885 4 357999999988764322111111 11    24567777777789999999999


Q ss_pred             CCCce
Q psy12422        267 SLGTA  271 (356)
Q Consensus       267 ~~g~~  271 (356)
                      .....
T Consensus       327 ~~l~~  331 (344)
T 1za6_B          327 EALHN  331 (344)
T ss_dssp             TTSTT
T ss_pred             CCCCC
Confidence            87653

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.92  E-value=6e-25  Score=174.66  Aligned_cols=154  Identities=13%  Similarity=0.045  Sum_probs=110.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeE--EEEEeeCCCCCCeEEEEEEEeCCceeE--EEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVV--SMEIIDCKPEDSGEYKCVATNKHGTDE--TNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~a~n~~g~~~--~~~~l~v~   76 (356)
                      |++|+|.|.+.+ |.+.|.|||+|..+..............  .|.|.+++.+|+|.|+|.+.|..|...  ..+.|.|.
T Consensus        23 G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~  101 (218)
T 1uct_A           23 DGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVT  101 (218)
T ss_dssp             TCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEE
T ss_pred             CCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEc
Confidence            789999999987 6889999999876643211111112223  799999999999999999999865332  23445443


Q ss_pred             ccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccce
Q psy12422         77 SEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKI  156 (356)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      +.                                                                              
T Consensus       102 ~~------------------------------------------------------------------------------  103 (218)
T 1uct_A          102 GL------------------------------------------------------------------------------  103 (218)
T ss_dssp             CS------------------------------------------------------------------------------
T ss_pred             Cc------------------------------------------------------------------------------
Confidence            21                                                                              


Q ss_pred             eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCce
Q psy12422        157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL  236 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~  236 (356)
                                                    ..+|.+...+ ...+.+|++++|.|.+.+.|.+.+.|+|+|..+...   
T Consensus       104 ------------------------------~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~---  149 (218)
T 1uct_A          104 ------------------------------YGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ---  149 (218)
T ss_dssp             ------------------------------SCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS---
T ss_pred             ------------------------------ccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc---
Confidence                                          2234443333 346889999999997777888999999999876542   


Q ss_pred             eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       237 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                       .........|.|.+++.+|+|.|+|.|.|..
T Consensus       150 -~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          150 -HQSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             -EEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             -ccCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence             1122334689999999999999999999874

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.92  E-value=6.3e-25  Score=168.57  Aligned_cols=149  Identities=13%  Similarity=0.173  Sum_probs=110.4

Q ss_pred             CCceEEEEEecc--CCCCeeEEeeCCEEcc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-
Q psy12422          1 MQNVIKVKVGST--KPPPTVKWYKGNRELS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-   67 (356)
Q Consensus         1 g~~v~l~C~~~g--~p~~~v~W~k~g~~l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-   67 (356)
                      |++|+|.|...+  .|.+.|+|||++..+.          ...+.....++  +|.|.+++.+|+|.|+|.|.|..|.. 
T Consensus        11 G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g--sL~I~~v~~~D~G~Y~C~~~n~~g~~~   88 (176)
T 1hng_A           11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG--DLKIKNLTRDDSGTYNVTVYSTNGTRI   88 (176)
T ss_dssp             TSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS--CEEESSCCGGGCEEEEEEEEETTCCEE
T ss_pred             CCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC--cEEEcccccccCEEEEEEEEeCCCCEE
Confidence            789999995433  5677899999997653          11122223445  59999999999999999999998886 


Q ss_pred             -EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccc
Q psy12422         68 -ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSST  146 (356)
Q Consensus        68 -~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (356)
                       ...+.|.|..+                                                                    
T Consensus        89 ~~~~~~l~V~~~--------------------------------------------------------------------  100 (176)
T 1hng_A           89 LNKALDLRILEM--------------------------------------------------------------------  100 (176)
T ss_dssp             EEEEEEEEEECC--------------------------------------------------------------------
T ss_pred             EEEEEEEEEeCC--------------------------------------------------------------------
Confidence             55566666532                                                                    


Q ss_pred             cccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEEC
Q psy12422        147 NNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN  226 (356)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~  226 (356)
                                                              ...|.+.        ..+..+.|.|.+.|.|+|.|.|+++
T Consensus       101 ----------------------------------------~~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~  132 (176)
T 1hng_A          101 ----------------------------------------VSKPMIY--------WECSNATLTCEVLEGTDVELKLYQG  132 (176)
T ss_dssp             ----------------------------------------CCCCEEE--------EETTTTEEEEECSSCSSCEEEEEET
T ss_pred             ----------------------------------------CCCCEEE--------ecCCcEEEEEEecCCCCcEEEEEEC
Confidence                                                    1112221        1133589999999999999999999


Q ss_pred             CEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        227 GQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       227 g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |..+.....           +.|.+++.+|+|.|+|.|.|..|.......+.
T Consensus       133 g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  173 (176)
T 1hng_A          133 KEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN  173 (176)
T ss_dssp             TEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             CEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceeccccc
Confidence            988764332           44557889999999999999999988877654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.92  E-value=3.8e-24  Score=168.05  Aligned_cols=169  Identities=15%  Similarity=0.174  Sum_probs=119.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC-EEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN-RELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g-~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|.|.|.|.|+|+. .++.  . ..........|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..++
T Consensus        16 G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p   92 (202)
T 1vca_A           16 GDSVSLTCSTTGCESPFFSWRTQIDSPLN--G-KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFP   92 (202)
T ss_dssp             TSCEEEEEEEESCSSCEEEEEETTCCCCS--S-EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred             CCcEEEEEeecCCCCCeEEEECCCCCCcc--c-eEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCC
Confidence            789999999999999999999942 3221  1 12233344579999999999999999999998888888888886431


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                      ..                                                                              
T Consensus        93 ~~------------------------------------------------------------------------------   94 (202)
T 1vca_A           93 KD------------------------------------------------------------------------------   94 (202)
T ss_dssp             SC------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC---CeEEEEECCEEccCCCce
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE---PRVSWTKNGQPLNSSNIL  236 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~---p~i~W~~~g~~~~~~~~~  236 (356)
                                                    +.+.  +. ..+.+|+.++|.|.+.|.++   +.|.|+++|..+......
T Consensus        95 ------------------------------~~~~--~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~  141 (202)
T 1vca_A           95 ------------------------------PEIH--LS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL  141 (202)
T ss_dssp             ------------------------------CEEE--ES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC
T ss_pred             ------------------------------CEeC--Cc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccc
Confidence                                          1111  11 35788999999999987543   369999999887532110


Q ss_pred             eEE----EeCCEEEEEEccCCCCCCeEEEEEEEcCCCce-------EEEEEEecCCCC
Q psy12422        237 DLK----YKNGVASLQIQEVFPEDEGVYVCTATNSLGTA-------ETKCKLTPLNSS  283 (356)
Q Consensus       237 ~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-------~~~~~l~p~~~~  283 (356)
                      ...    .......|.|.....+|.|.|+|+|.|..+..       ..+..|.+..+|
T Consensus       142 ~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P  199 (202)
T 1vca_A          142 EDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  199 (202)
T ss_dssp             SCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             cccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCC
Confidence            000    01113467889888899999999999998762       445666554444

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.92  E-value=1.1e-24  Score=169.02  Aligned_cols=65  Identities=22%  Similarity=0.267  Sum_probs=49.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEE--cc-------------cCCeeEEe---cCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRE--LS-------------KRDYSMSY---SDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~--l~-------------~~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |+++.|.|.+.+.|.+.+.|+|++..  +.             ..+.....   .++..+|.|.+++.+|+|.|+|.+.|
T Consensus        10 G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~   89 (184)
T 2ny1_B           10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVED   89 (184)
T ss_dssp             TSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETT
T ss_pred             CCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEEEEEEc
Confidence            78999999999999999999999863  21             01111111   34456799999999999999999987


Q ss_pred             CCc
Q psy12422         63 KHG   65 (356)
Q Consensus        63 ~~g   65 (356)
                      ..+
T Consensus        90 ~~~   92 (184)
T 2ny1_B           90 QKE   92 (184)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            643

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.92  E-value=2.6e-24  Score=175.27  Aligned_cols=168  Identities=15%  Similarity=0.235  Sum_probs=118.0

Q ss_pred             CCceEEEEEecc---CCCCeeEEeeCCEEcc-----------------------------c-CCeeEEecCCeEEEEEee
Q psy12422          1 MQNVIKVKVGST---KPPPTVKWYKGNRELS-----------------------------K-RDYSMSYSDGVVSMEIID   47 (356)
Q Consensus         1 g~~v~l~C~~~g---~p~~~v~W~k~g~~l~-----------------------------~-~~~~~~~~~~~~~L~i~~   47 (356)
                      |++++|.|.+.+   .|.+.|+|+|++....                             . ..+.....++..+|+|.+
T Consensus        17 G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~   96 (250)
T 2fbo_J           17 GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTH   96 (250)
T ss_dssp             TSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSCCEEECS
T ss_pred             CCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcceEEEee
Confidence            789999999987   8889999999875431                             0 001111122345899999


Q ss_pred             CCCCCCeEEEEEEEeCCcee-----EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCc
Q psy12422         48 CKPEDSGEYKCVATNKHGTD-----ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYS  122 (356)
Q Consensus        48 ~~~~D~G~Y~C~a~n~~g~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~  122 (356)
                      ++.+|+|.|+|.+.|..+..     ...+.|.|...+                                           
T Consensus        97 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------  133 (250)
T 2fbo_J           97 VHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT-------------------------------------------  133 (250)
T ss_dssp             CCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS-------------------------------------------
T ss_pred             CChhhCeEEEEEeccCccCCcccccceeEEEEEeccC-------------------------------------------
Confidence            99999999999999976642     456667665321                                           


Q ss_pred             cccCCCCceEEEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeec-ccCCceee
Q psy12422        123 SHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFA-NKLTDKTI  201 (356)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v  201 (356)
                                                                                       .+|.+. ..+....+
T Consensus       134 -----------------------------------------------------------------~~~~~~~~~~~~~~v  148 (250)
T 2fbo_J          134 -----------------------------------------------------------------PSNNVHVSTAEVVQV  148 (250)
T ss_dssp             -----------------------------------------------------------------CCSCCEECCCSEEEC
T ss_pred             -----------------------------------------------------------------CCCeEEEecCceEEe
Confidence                                                                             011111 12244667


Q ss_pred             cCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCce----------------------eEEEeCCEEEEEEccCCCCCCeE
Q psy12422        202 DDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL----------------------DLKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~----------------------~~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      .+|+.+.|.|.+.|.|.|.+.|++++..+......                      ..... ....|.|.+++.+|+|.
T Consensus       149 ~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~  227 (250)
T 2fbo_J          149 DEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS-GARNLVIRAAKITDAGR  227 (250)
T ss_dssp             CTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE-TTTEEEECSCCGGGCEE
T ss_pred             cCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC-CccEEEEecCCcccCEE
Confidence            88999999999999999999999998877542211                      11111 11489999999999999


Q ss_pred             EEEEEEcCCC---ceEEEEEE
Q psy12422        260 YVCTATNSLG---TAETKCKL  277 (356)
Q Consensus       260 Y~C~a~n~~g---~~~~~~~l  277 (356)
                      |+|.|.|..|   ....++.|
T Consensus       228 Y~C~a~N~~g~~g~~~~~~~l  248 (250)
T 2fbo_J          228 VWCELATGQGELDADRSSTIL  248 (250)
T ss_dssp             EEEEEESSSSGGGEEEEEEEE
T ss_pred             EEEEecCCccccCccceeEEE
Confidence            9999999554   55555554

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.92  E-value=3.6e-25  Score=171.70  Aligned_cols=163  Identities=17%  Similarity=0.227  Sum_probs=108.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEee-CCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~-~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.+ |+ .|+|+|||..+...      .++  +|.|.+ ++.+|+|.|+|.|.|..|.....+.+.|....
T Consensus        14 G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~------~~~--~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~   83 (186)
T 1jbj_A           14 GTSVELTCPLDS-DE-NLKWEKNGQELPQK------HDK--HLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSAD   83 (186)
T ss_dssp             TTEEEEECSSCC-CT-TCEEEETTEEECSC------CCS--EEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCC
T ss_pred             CcEEEEEEeCCC-CC-ceEEEECCEECCCC------CCC--EEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEeccc
Confidence            789999999987 44 49999999998753      122  799999 99999999999999998875555555443221


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                      ......                       ...   ....                                         
T Consensus        84 ~~~~~~-----------------------~~~---~~~~-----------------------------------------   96 (186)
T 1jbj_A           84 DAKKDA-----------------------AKK---DDAK-----------------------------------------   96 (186)
T ss_dssp             CCCCCC-----------------------CCC---CCCS-----------------------------------------
T ss_pred             cccccc-----------------------ccc---cccc-----------------------------------------
Confidence            100000                       000   0000                                         


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecc--cCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFAN--KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD  237 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~  237 (356)
                                         ...++.  ..+.....  ......+.+|+++.|.|.+   |.|.|.|+|||..+.....  
T Consensus        97 -------------------~~~~~~--~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~--  150 (186)
T 1jbj_A           97 -------------------KDDAKK--DGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA--  150 (186)
T ss_dssp             -------------------CCSSST--TCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC--
T ss_pred             -------------------cCCccc--cccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC--
Confidence                               000000  00000000  0011235689999999998   8899999999999874332  


Q ss_pred             EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       238 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                           ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus       151 -----~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 -----TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             -----CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             -----CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence                 22379999999999999999999999876

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.91  E-value=5e-24  Score=165.67  Aligned_cols=153  Identities=12%  Similarity=0.111  Sum_probs=110.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee--EEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD--ETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~--~~~~~l~v~~~   78 (356)
                      |++|+|.|.+.+. ++.+.|||+|..+...............|.|.+++.+|+|.|+|.+.|..+..  +..+.|.|.+.
T Consensus        18 G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~   96 (188)
T 1oll_A           18 EKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEM   96 (188)
T ss_dssp             TCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESC
T ss_pred             CCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEeccc
Confidence            7899999999754 57899999998875211011122344589999999999999999998875432  23345555321


Q ss_pred             ccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                                                                                                      
T Consensus        97 --------------------------------------------------------------------------------   96 (188)
T 1oll_A           97 --------------------------------------------------------------------------------   96 (188)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~  238 (356)
                                                  ..+|.+...+ ...+.+|++++|.|.+.+ +++.+.|+|+|..+..    ..
T Consensus        97 ----------------------------~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~~  142 (188)
T 1oll_A           97 ----------------------------YDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QR  142 (188)
T ss_dssp             ----------------------------SCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE----EE
T ss_pred             ----------------------------CCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc----cc
Confidence                                        1234444333 346889999999999876 4578999999876543    11


Q ss_pred             EEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        239 KYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      ........|.|.+++.+|+|.|+|.|.|..
T Consensus       143 ~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          143 GYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             cCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            233456789999999999999999999865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.91  E-value=1.7e-24  Score=184.97  Aligned_cols=166  Identities=17%  Similarity=0.213  Sum_probs=128.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCe-EEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|.|.|.+.|++++..+..... ........+|.|.+++.+|+| .|+|.|.|..|.....+.|.|..+ 
T Consensus       173 G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~-  250 (347)
T 2ifg_A          173 GDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFP-  250 (347)
T ss_dssp             TCCEEEEEEEECSSCCCCCEEESCCCSSEEEC-CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEE-
T ss_pred             CCcEEEEEEEecCCCCEEEEEcCCceeecccc-cceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCC-
Confidence            78999999999999999999999876542210 112334458999999999999 999999999888766666555322 


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                                                                                                      
T Consensus       251 --------------------------------------------------------------------------------  250 (347)
T 2ifg_A          251 --------------------------------------------------------------------------------  250 (347)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEE
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK  239 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~  239 (356)
                                                    |.+    ....+.+|+.+.|.|.+.|+|.|.|.|+++|..+.........
T Consensus       251 ------------------------------P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~  296 (347)
T 2ifg_A          251 ------------------------------ASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTE  296 (347)
T ss_dssp             ------------------------------EEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEE
T ss_pred             ------------------------------Cee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeE
Confidence                                          111    0012346889999999999999999999999999865544333


Q ss_pred             EeC-------CEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCC
Q psy12422        240 YKN-------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNS  282 (356)
Q Consensus       240 ~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~  282 (356)
                      ...       ..++|.|.+++.+|+|.|+|.|.|..|....++.+.+..+
T Consensus       297 ~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  346 (347)
T 2ifg_A          297 FLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN  346 (347)
T ss_dssp             ECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCC
T ss_pred             EEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCC
Confidence            222       2568999999999999999999999999999998875543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.91  E-value=1.7e-24  Score=182.68  Aligned_cols=218  Identities=17%  Similarity=0.205  Sum_probs=146.8

Q ss_pred             cccccCccceeeeccc---CCceeeecccccccCCccccCCC-CceEEE----EeeccccccccccccCCCccceeeeee
Q psy12422         90 NFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHTDDT-GRTTTQ----MSTLSSNYSSSTNNATSPSKKITRRMN  161 (356)
Q Consensus        90 ~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (356)
                      ..+.+|+.+.|.|.+.   |.+.+.|++++..+......... ......    ...+.|.|.|...+...          
T Consensus        16 ~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g----------   85 (317)
T 2y25_A           16 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG----------   85 (317)
T ss_dssp             EEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSC----------
T ss_pred             EEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCC----------
Confidence            5578999999999976   55789999987665432211111 100111    22333445544422211          


Q ss_pred             ccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC----------CCCCeEEEEECCEEcc
Q psy12422        162 SILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG----------DPEPRVSWTKNGQPLN  231 (356)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g----------~p~p~i~W~~~g~~~~  231 (356)
                                .......+.+     ..+|.+...+....+.+|+.+.|.|.+.+          .|.+.+.|+++|..+.
T Consensus        86 ----------~~~~~~~l~v-----~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~  150 (317)
T 2y25_A           86 ----------KDKSRLKLVD-----EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR  150 (317)
T ss_dssp             ----------EEEEEECCST-----HHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCC
T ss_pred             ----------cEEEEEEEEE-----ecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECC
Confidence                      1111122222     22233333334455667888888887776          7899999999999998


Q ss_pred             CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC--------------------CC-------Cc
Q psy12422        232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL--------------------NS-------SN  284 (356)
Q Consensus       232 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~--------------------~~-------~~  284 (356)
                      ...++.....++...|.|.+++.+|+|.|+|.|.|..|....++.+...                    ..       +.
T Consensus       151 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  230 (317)
T 2y25_A          151 YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD  230 (317)
T ss_dssp             CCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCS
T ss_pred             CCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCc
Confidence            8777777777777889999999999999999999999988877776411                    00       00


Q ss_pred             -cc-------------------eeEEeC------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy12422        285 -IL-------------------DLKYKN------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  326 (356)
Q Consensus       285 -~~-------------------~~~~~~------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  326 (356)
                       +.                   .+.|..                  ....|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus       231 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  310 (317)
T 2y25_A          231 VVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFT  310 (317)
T ss_dssp             EEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEE
Confidence             00                   344432                  2248999999999999999999999999999999


Q ss_pred             EEEEec
Q psy12422        327 LTVRST  332 (356)
Q Consensus       327 l~V~~~  332 (356)
                      |.|..|
T Consensus       311 l~V~~P  316 (317)
T 2y25_A          311 VSVFIP  316 (317)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999865

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.91  E-value=5.1e-24  Score=165.01  Aligned_cols=145  Identities=17%  Similarity=0.151  Sum_probs=107.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee--EEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD--ETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~--~~~~~l~v~~~   78 (356)
                      |++|+|.|.+.+ |.+.+.|||+|...       ...++  .|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|.+.
T Consensus        22 G~~v~L~C~~~~-~~~~~~W~k~g~~~-------~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~   91 (184)
T 2gi7_A           22 EKPVTLRCQGPP-GVDLYRLEKLSSSR-------YQDQA--VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGV   91 (184)
T ss_dssp             TCCEEEEEECST-TCSEEEEEETTTCC-------EESSS--EEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESS
T ss_pred             CCcEEEEEeCCC-CCCEEEEEECCccc-------cCccc--EEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCc
Confidence            789999999987 78899999998751       12222  79999999999999999999987642  23455555321


Q ss_pred             ccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                                                                                                      
T Consensus        92 --------------------------------------------------------------------------------   91 (184)
T 2gi7_A           92 --------------------------------------------------------------------------------   91 (184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~  238 (356)
                                                  ..+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+|+|..+......  
T Consensus        92 ----------------------------~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~--  139 (184)
T 2gi7_A           92 ----------------------------FAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPE--  139 (184)
T ss_dssp             ----------------------------SCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCC--
T ss_pred             ----------------------------CCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecC--
Confidence                                        1223333333 33577899999999987654 699999999877653211  


Q ss_pred             EEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                        ......|.|.+++.+|+|.|+|.|.|..+
T Consensus       140 --~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          140 --RWYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             --EEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             --CCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence              12234799999999999999999999865

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.91  E-value=7.8e-24  Score=168.14  Aligned_cols=169  Identities=16%  Similarity=0.236  Sum_probs=120.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++|+|.|.+.+.|.+.+.|||+  +...             ...++......+..+|.|.+++.+|+|.|+|.+.|..+
T Consensus        15 G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   94 (213)
T 3mj8_L           15 GQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTN   94 (213)
T ss_dssp             TSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTT
T ss_pred             CCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEEeccCCc
Confidence            89999999999999999999992  2211             11244444466677999999999999999999999877


Q ss_pred             ---eeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccc
Q psy12422         66 ---TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNY  142 (356)
Q Consensus        66 ---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (356)
                         .....+.|.|...+                                                               
T Consensus        95 ~~~~~~~~~~l~V~~~~---------------------------------------------------------------  111 (213)
T 3mj8_L           95 SAWVFGSGTKVTVLGQP---------------------------------------------------------------  111 (213)
T ss_dssp             TEEEEBCCEEEEEECSC---------------------------------------------------------------
T ss_pred             ceeEEcCceEEEEeCCC---------------------------------------------------------------
Confidence               33444556554210                                                               


Q ss_pred             cccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCC-CC-Ce
Q psy12422        143 SSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PE-PR  220 (356)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-p~  220 (356)
                                                                  ..+|.+...+....+.+|+.++|.|.+.|. |+ +.
T Consensus       112 --------------------------------------------~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~  147 (213)
T 3mj8_L          112 --------------------------------------------NAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVA  147 (213)
T ss_dssp             --------------------------------------------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCE
T ss_pred             --------------------------------------------CCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeE
Confidence                                                        133444444434445589999999999885 44 38


Q ss_pred             EEEEECCEEccCCCceeE-EEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        221 VSWTKNGQPLNSSNILDL-KYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       221 i~W~~~g~~~~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      +.|+++|..+........ ....+    .+.|.|.++..+|+|.|+|.|.|..+....++.
T Consensus       148 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          148 VTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             EEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred             EEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence            999999998865321100 00222    246999999999999999999999987766654

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.91  E-value=1.2e-23  Score=165.39  Aligned_cols=147  Identities=18%  Similarity=0.241  Sum_probs=108.8

Q ss_pred             CCceEEEEEeccCCCCe-eEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~-v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |++++|.|.+.+.|.+. |+|||||..+....         ..|.|.+++.+|+|.|+|.+.|.  ..+..+.|.|... 
T Consensus        22 G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~---------~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~~~l~V~~~-   89 (204)
T 3sgj_C           22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQA---------SSYFIDAATVDDSGEYRCQTQLS--TLSDPVQLEVHIG-   89 (204)
T ss_dssp             TCCEEEEEECCSSSSCCCEEEEETTEEESCCS---------SEEEESSCCGGGCEEEEEEETTS--BCCCCEEEEEECS-
T ss_pred             CCCEEEEEcCCCCCCCcEEEEEECCEEcccCc---------cEEEEecccccCCEEEEEEeCCC--cccccEEEEEecC-
Confidence            78999999999988876 99999999886542         38999999999999999999874  3333455555422 


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                                                                                                      
T Consensus        90 --------------------------------------------------------------------------------   89 (204)
T 3sgj_C           90 --------------------------------------------------------------------------------   89 (204)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCC-CCCeEEEEECCEEccCCCceeE
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKNGQPLNSSNILDL  238 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~~g~~~~~~~~~~~  238 (356)
                                                    |.+...+ ...+.+|+.+.|.|.+.+. |.+.+.|+++|..+..      
T Consensus        90 ------------------------------p~~~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~------  132 (204)
T 3sgj_C           90 ------------------------------WLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY------  132 (204)
T ss_dssp             ------------------------------SEEEECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE------
T ss_pred             ------------------------------ceEecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec------
Confidence                                          1111111 1357789999999999655 5688999999988642      


Q ss_pred             EEeCCEEEEEEccCCCCCCeEEEEEEEcCCC-ceEEEEEEe
Q psy12422        239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLG-TAETKCKLT  278 (356)
Q Consensus       239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~  278 (356)
                      ....  ..|.|.+++.+|+|.|+|.|.|..+ .....+.|.
T Consensus       133 ~~~~--~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~  171 (204)
T 3sgj_C          133 FHHN--SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQIT  171 (204)
T ss_dssp             EEEC--CCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ccCC--ceEEECcCCcccCEEEEEEEEeCCCceecCcEEEE
Confidence            1122  3799999999999999999999543 333344444

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.91  E-value=5.7e-23  Score=164.69  Aligned_cols=166  Identities=16%  Similarity=0.172  Sum_probs=111.3

Q ss_pred             CCceEEEEEeccCCCC---eeEEeeCCE-----------Eccc-------CCeeEE---ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPPP---TVKWYKGNR-----------ELSK-------RDYSMS---YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~---~v~W~k~g~-----------~l~~-------~~~~~~---~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.+.|.+   .|+|+|++.           .+..       .+....   ..++..+|+|.+++.+|+|.|
T Consensus        19 G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   98 (226)
T 4f80_A           19 GEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKY   98 (226)
T ss_dssp             TSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchHHCeeE
Confidence            8999999999876655   689998653           2211       011111   123567999999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEe
Q psy12422         57 KCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMS  136 (356)
Q Consensus        57 ~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~  136 (356)
                      +|.|.|..|.....+.+.+....                                                         
T Consensus        99 ~C~a~n~~~~~~~~v~~~~~~~~---------------------------------------------------------  121 (226)
T 4f80_A           99 LCYFQDGDFYEKALVELKVAALG---------------------------------------------------------  121 (226)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBCC---------------------------------------------------------
T ss_pred             EEEEECCCcEEEEEEEEeeccce---------------------------------------------------------
Confidence            99999998877665554443210                                                         


Q ss_pred             eccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC-
Q psy12422        137 TLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-  215 (356)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-  215 (356)
                                                                              ........+.+|+.+.|.|.+.| 
T Consensus       122 --------------------------------------------------------~~~~~~~~~~~g~~v~l~c~~~g~  145 (226)
T 4f80_A          122 --------------------------------------------------------SDLHVDVKGYKDGGIHLECRSTGW  145 (226)
T ss_dssp             --------------------------------------------------------CCCEEEEEEEETTEEEEEEEEEEE
T ss_pred             --------------------------------------------------------ecccceeeeccCCceeeEEEeccC
Confidence                                                                    00011235667999999999977 


Q ss_pred             CCCCeEEEEECC-EEccCCCceeEEEeCC-EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422        216 DPEPRVSWTKNG-QPLNSSNILDLKYKNG-VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       216 ~p~p~i~W~~~g-~~~~~~~~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      +|.|.|+|++++ ..+............+ ...+.+..++.+|+|.|+|.|.|..|..+.++.+..
T Consensus       146 ~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v  211 (226)
T 4f80_A          146 YPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI  211 (226)
T ss_dssp             BSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECC
T ss_pred             CCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEE
Confidence            699999999955 4443332222222222 234556678899999999999999999999888873

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.91  E-value=2.9e-24  Score=170.63  Aligned_cols=169  Identities=16%  Similarity=0.184  Sum_probs=117.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--EEc----------c---cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--REL----------S---KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~~l----------~---~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |+++.|.|.+.+.|.+.|+|||++  ..+          .   ..++......+..+|+|.+++.+|+|.|+|.+.|..+
T Consensus        16 G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   95 (213)
T 3d9a_L           16 GNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWP   95 (213)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCc
Confidence            789999999999999999999843  221          0   1344444456677999999999999999999999876


Q ss_pred             eeEE-EEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccc
Q psy12422         66 TDET-NCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSS  144 (356)
Q Consensus        66 ~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (356)
                      .... ...|.|...                                                                  
T Consensus        96 ~~~~~~~~l~V~~~------------------------------------------------------------------  109 (213)
T 3d9a_L           96 YTFGGGTKLEIKRA------------------------------------------------------------------  109 (213)
T ss_dssp             CEECCCEEEEECCC------------------------------------------------------------------
T ss_pred             ceeCCCEEEEEecC------------------------------------------------------------------
Confidence            4322 234555321                                                                  


Q ss_pred             cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC-CCCC-eEE
Q psy12422        145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEP-RVS  222 (356)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p-~i~  222 (356)
                                                                ..+|.+...+....+.+|+.++|.|.+.| .|++ .+.
T Consensus       110 ------------------------------------------~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~  147 (213)
T 3d9a_L          110 ------------------------------------------DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVK  147 (213)
T ss_dssp             ------------------------------------------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEE
T ss_pred             ------------------------------------------CCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEE
Confidence                                                      12233333222222347889999999987 6665 799


Q ss_pred             EEECCEEccCCCceeEE--E-eCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        223 WTKNGQPLNSSNILDLK--Y-KNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       223 W~~~g~~~~~~~~~~~~--~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      |+++|..+.........  . .++    .+.|.|.+++.+|+|.|+|.|.|..........+
T Consensus       148 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i  209 (213)
T 3d9a_L          148 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  209 (213)
T ss_dssp             EEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred             EEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence            99999988755111110  0 111    2489999999999999999999998775444444

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.90  E-value=1.1e-24  Score=172.40  Aligned_cols=161  Identities=20%  Similarity=0.316  Sum_probs=115.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcc-----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCce--e
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELS-----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT--D   67 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~-----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~--~   67 (356)
                      |+++.|.|.+.+.|.+.+.|+|++..+.           .........+  ..|.|.+++.+|+|.|+|.+.|..|.  .
T Consensus        19 G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~   96 (209)
T 1nbq_A           19 NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP--TGITFKSVTREDTGTYTCMVSEEGGNSYG   96 (209)
T ss_dssp             TCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET--TEEECSCCCTTSCSEEEEEEEETTSSCEE
T ss_pred             CCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec--cEEEEeeCCHHHCcEEEEEEecCCCCccc
Confidence            7899999999999999999999875521           1111122222  38999999999999999999998653  3


Q ss_pred             EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecccccccccc
Q psy12422         68 ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTN  147 (356)
Q Consensus        68 ~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (356)
                      +..+.|.|..+                                                                     
T Consensus        97 ~~~~~l~V~~~---------------------------------------------------------------------  107 (209)
T 1nbq_A           97 EVKVKLIVLVP---------------------------------------------------------------------  107 (209)
T ss_dssp             CCEEECCEEBC---------------------------------------------------------------------
T ss_pred             eEEEEEEEecC---------------------------------------------------------------------
Confidence            33444444322                                                                     


Q ss_pred             ccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCCCCeEEEEEC
Q psy12422        148 NATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKN  226 (356)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~  226 (356)
                                                                |.+........+.+|+.+.|.|.+ .|+|.|.+.|+++
T Consensus       108 ------------------------------------------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~  145 (209)
T 1nbq_A          108 ------------------------------------------PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKD  145 (209)
T ss_dssp             ------------------------------------------CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEET
T ss_pred             ------------------------------------------CcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEEC
Confidence                                                      111111112357889999999997 9999999999999


Q ss_pred             CEEccCCCce-------eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        227 GQPLNSSNIL-------DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       227 g~~~~~~~~~-------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      |..+......       .+........|.|.+++.+|+|.|+|.|.|..|....+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s  200 (209)
T 1nbq_A          146 GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS  200 (209)
T ss_dssp             TCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEEC
T ss_pred             CeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccccc
Confidence            9888754321       11112233589999999999999999999999988443

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.90  E-value=1.2e-22  Score=169.33  Aligned_cols=230  Identities=18%  Similarity=0.210  Sum_probs=138.4

Q ss_pred             cccccccCccceeeecccC-CceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeeeeeccccC
Q psy12422         88 AHNFLYSGDRKYIEKHIRP-APAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDT  166 (356)
Q Consensus        88 ~~~~~~~g~~~~l~c~~~p-~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (356)
                      ....+.+|+.+.|.|.+.. ++.+.|++.+.......     .+....  .. +....+........+.+.|.|......
T Consensus        12 ~~~~v~~G~~v~l~C~~~~~p~~v~W~~~~g~~~~~~-----~~~~~~--~~-~~~~~L~i~~~~~~D~G~Y~C~~~n~~   83 (291)
T 2wim_A           12 SKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST-----QRVVVQ--KE-GVRSRLTIYNANIEDAGIYRCQATDAK   83 (291)
T ss_dssp             SEEEEETTCCEEEEEEEESCCSEEECBCTTCCBCCCB-----TTEEEE--EE-TTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             cceEecCCCcEEEEEEEeCCCCceEEECCCCcCccCC-----CcEEEe--cC-CCEEEEEEccCCcccCEEEEEEEeccc
Confidence            3446789999999999983 34799998443322111     010000  00 000111112223333344444332221


Q ss_pred             CCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEE
Q psy12422        167 DSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS  246 (356)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~  246 (356)
                      +   ........+.+     ..+|.+...+....+.+|+.+.|.|.+.++|.|.+.|++++..+.......+.... ...
T Consensus        84 g---~~~~~~~~l~v-----~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~  154 (291)
T 2wim_A           84 G---QTQEATVVLEI-----YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-NNN  154 (291)
T ss_dssp             S---CEEEEEEEEEE-----ECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECT-TSC
T ss_pred             C---ceEEEEEEEEe-----cCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEcc-CCC
Confidence            1   11122333444     44566666667778999999999999999999999999999887643222222221 237


Q ss_pred             EEEccCCCCCCeEEEEEEEcCCCceE--EEEEEecCCCCcc---------c-------------------eeEEeC----
Q psy12422        247 LQIQEVFPEDEGVYVCTATNSLGTAE--TKCKLTPLNSSNI---------L-------------------DLKYKN----  292 (356)
Q Consensus       247 L~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~p~~~~~~---------~-------------------~~~~~~----  292 (356)
                      |.|.+++.+|+|.|+|.|.|..+...  ..+.+....++.+         .                   .+.|..    
T Consensus       155 L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~  234 (291)
T 2wim_A          155 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL  234 (291)
T ss_dssp             EEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEE
T ss_pred             EEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEE
Confidence            99999999999999999999986543  2233331111110         0                   344433    


Q ss_pred             -----------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422        293 -----------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       293 -----------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  334 (356)
                                 ....|.|.+++.+|+|.|+|.|.|..|..++.+.|.|..++.
T Consensus       235 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          235 IEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             CCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred             CcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence                       246799999999999999999999999999999999988764

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.90  E-value=4.1e-23  Score=158.58  Aligned_cols=139  Identities=17%  Similarity=0.244  Sum_probs=105.8

Q ss_pred             CCceEEEEEeccCCCCe-eEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~-v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |++++|.|.+.+.|.+. ++|||+|..+...         ...|.|.+++.+|+|.|+|.+.|..+  +..+.|.|... 
T Consensus        22 G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~---------~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~l~V~~~-   89 (175)
T 1fnl_A           22 KDSVTLKCQGAYSPEDNSTQWFHNESLISSQ---------ASSYFIDAATVNDSGEYRCQTNLSTL--SDPVQLEVHIG-   89 (175)
T ss_dssp             TCCEEEEEECCCBTTBCCCEEEETTEEEESS---------CSEEEESSCCGGGCEEEEEECSSSCC--CCCEEEEEECS-
T ss_pred             CCcEEEEeeCCCCCCCcceEEEECCEEccCC---------ceEEEEeCCCcccCEEEEEEeeCCcc--cccEEEEEeCC-
Confidence            78999999999988776 8999999987532         22899999999999999999988544  33445555411 


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                                                                                                      
T Consensus        90 --------------------------------------------------------------------------------   89 (175)
T 1fnl_A           90 --------------------------------------------------------------------------------   89 (175)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCceeE
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDL  238 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~  238 (356)
                                                    +.+.. .....+.+|+.+.|.|.+.+.|++ .+.|+++|..+..      
T Consensus        90 ------------------------------~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~------  132 (175)
T 1fnl_A           90 ------------------------------WLLLQ-APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------  132 (175)
T ss_dssp             ------------------------------SEEEE-CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------
T ss_pred             ------------------------------Cceee-CCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC------
Confidence                                          00000 112357789999999999887765 8999999988742      


Q ss_pred             EEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ....  ..|.|.+++.+|+|.|+|.|.|..+.
T Consensus       133 ~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~~  162 (175)
T 1fnl_A          133 FHHN--SDFHIPKATLKDSGSYFCRGLVGSKN  162 (175)
T ss_dssp             EEEC--CCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCC--CEEEEcccChhhCeEEEEEEEcCCCC
Confidence            1122  37999999999999999999997664

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.90  E-value=9.1e-24  Score=187.38  Aligned_cols=248  Identities=14%  Similarity=0.156  Sum_probs=143.6

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccCCe-eEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDY-SMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~-~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   73 (356)
                      |+++.|.|.+.|. |. +.|+|+|+|..+..... .....++.    ..|.|.+++.+| |.|+|.|.|..+.......+
T Consensus       147 g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v  225 (457)
T 1hzh_H          147 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKA  225 (457)
T ss_dssp             TCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEe
Confidence            6899999999876 65 79999999976532111 11223332    379999999999 99999999987776555444


Q ss_pred             EEeccc------------c--chhh-hhhcc--cccccCccceeeeccc--CC-c---eeeecccccccCCccc----cC
Q psy12422         74 IVESEE------------E--SKEQ-QELAH--NFLYSGDRKYIEKHIR--PA-P---AIITTRQEIKSSYSSH----TD  126 (356)
Q Consensus        74 ~v~~~~------------~--~~~~-~~~~~--~~~~~g~~~~l~c~~~--p~-p---~i~w~~~~~~~~~~~~----~~  126 (356)
                      .+...+            .  .+.. ...+.  ..+.+|+.+.|.|.+.  |+ |   .+.|++++..+.....    ..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~  305 (457)
T 1hzh_H          226 EPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ  305 (457)
T ss_dssp             CCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEEC
T ss_pred             cccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceec
Confidence            433211            0  0110 00111  1257899999999987  22 2   7999998866532110    01


Q ss_pred             CCCceEEE--E---eec---cccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC-C
Q psy12422        127 DTGRTTTQ--M---STL---SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL-T  197 (356)
Q Consensus       127 ~~~~~~~~--~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~  197 (356)
                      ..+.....  .   ..+   .+.|.|.+.+....                    ......+.+.. ....+|.+...+ .
T Consensus       306 ~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~--------------------~~~~~~v~~~~-~~~~~P~v~~~~~~  364 (457)
T 1hzh_H          306 YNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP--------------------APIEKTISKAK-GQPREPQVYTLPPS  364 (457)
T ss_dssp             TTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSS--------------------SCEEEEECCCC-CCCBCCEEEEECCC
T ss_pred             CCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCC--------------------CcceEEEEccc-CCCCCCeEEEECCC
Confidence            11111110  0   112   45555554321110                    01111222110 114556665443 3


Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEECCEEccCCCceeEEEe-CC----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTKNGQPLNSSNILDLKYK-NG----VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~~~~~~~~-~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ...+..|+ +.|.|.+.|.|++  .|.|++||..+........... ++    ...|.|.....+|+|.|+|.|.|....
T Consensus       365 ~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  443 (457)
T 1hzh_H          365 RDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  443 (457)
T ss_dssp             GGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             ccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCC
Confidence            33345555 9999999986554  8999999998864322111111 11    135667777668899999999998764


Q ss_pred             e
Q psy12422        271 A  271 (356)
Q Consensus       271 ~  271 (356)
                      .
T Consensus       444 ~  444 (457)
T 1hzh_H          444 N  444 (457)
T ss_dssp             G
T ss_pred             C
Confidence            3

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.90  E-value=1.4e-23  Score=166.34  Aligned_cols=166  Identities=13%  Similarity=0.163  Sum_probs=113.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-----------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-----------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-----------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++|+|.|.+.+.|.+.|.|||+  |..+           .  ..++.....++..+|.|.+++.+|+|.|.|.+.|..+
T Consensus        15 G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   94 (210)
T 1lk3_L           15 GEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGP   94 (210)
T ss_dssp             TSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCC
Confidence            78999999999999899999994  3222           0  1344444455667999999999999999999998765


Q ss_pred             eeE-EEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccc
Q psy12422         66 TDE-TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSS  144 (356)
Q Consensus        66 ~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (356)
                      ... ....|.|...                                                                  
T Consensus        95 ~~~~~~~~l~V~~~------------------------------------------------------------------  108 (210)
T 1lk3_L           95 LTFGAGTKLELKRA------------------------------------------------------------------  108 (210)
T ss_dssp             CEECCCEEEEECCC------------------------------------------------------------------
T ss_pred             ceeCCCEEEEEcCC------------------------------------------------------------------
Confidence            432 2234444321                                                                  


Q ss_pred             cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC-CCCC-eEE
Q psy12422        145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEP-RVS  222 (356)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p-~i~  222 (356)
                                                                ..+|.+...+....+.+|+.++|.|.+.| .|++ .|.
T Consensus       109 ------------------------------------------~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  146 (210)
T 1lk3_L          109 ------------------------------------------DAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVK  146 (210)
T ss_dssp             ------------------------------------------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEE
T ss_pred             ------------------------------------------CcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEE
Confidence                                                      12233333222222447999999999987 4554 799


Q ss_pred             EEECCEEccCC-Cce-eEEE-eCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        223 WTKNGQPLNSS-NIL-DLKY-KNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       223 W~~~g~~~~~~-~~~-~~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      |+++|..+... ... .... .++    .+.|.|.++..+|+|.|+|.|.|........
T Consensus       147 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  205 (210)
T 1lk3_L          147 WKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVV  205 (210)
T ss_dssp             EEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEE
T ss_pred             EEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeee
Confidence            99999988654 110 0001 111    2479999999999999999999988754433

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.90  E-value=1.1e-22  Score=171.29  Aligned_cols=143  Identities=17%  Similarity=0.268  Sum_probs=108.9

Q ss_pred             CCeecccC-CceeecCCCeEEEEEEEc-CCCCCeEEEEECCEEccCCCceeEEEe--CCEEEEEEccCCCCCCeEEEEEE
Q psy12422        189 PPQFANKL-TDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYK--NGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       189 ~p~~~~~~-~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      +|.+...+ ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+....++.+...  .+...|.|.+++.+|+|.|+|.|
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  185 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL  185 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEE
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEE
Confidence            34443333 377899999999999998 899999999999999988776665554  55677999999999999999999


Q ss_pred             EcCCCceEEEEEEe-----------------------cC----------------------CCCccceeEEeC-------
Q psy12422        265 TNSLGTAETKCKLT-----------------------PL----------------------NSSNILDLKYKN-------  292 (356)
Q Consensus       265 ~n~~g~~~~~~~l~-----------------------p~----------------------~~~~~~~~~~~~-------  292 (356)
                      .|..+.......+.                       |.                      ..+....+.|..       
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~  265 (312)
T 2y23_A          186 QDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV  265 (312)
T ss_dssp             ESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEE
T ss_pred             EeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCC
Confidence            88766554444431                       10                      000001334422       


Q ss_pred             --------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        293 --------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       293 --------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                              +...|.|.+++.+|+|.|+|.|.|..|..++.+.|.|++
T Consensus       266 ~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~~  312 (312)
T 2y23_A          266 DEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA  312 (312)
T ss_dssp             ECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSCC
T ss_pred             CCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEecC
Confidence                    346899999999999999999999999999999998753

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.90  E-value=8.6e-23  Score=160.46  Aligned_cols=155  Identities=12%  Similarity=0.092  Sum_probs=107.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCee--EEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc-----eeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYS--MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG-----TDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g-----~~~~~~~l   73 (356)
                      |++|+|.|.+. .|.+.+.|||+|..+......  .........|.|.+++.+|+|.|+|.+.|...     ..+..+.|
T Consensus        22 G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l  100 (201)
T 1nkr_A           22 EETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDI  100 (201)
T ss_dssp             TCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEE
T ss_pred             CCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEE
Confidence            78999999997 478899999999876432111  11122345899999999999999999987531     22334455


Q ss_pred             EEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCc
Q psy12422         74 IVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPS  153 (356)
Q Consensus        74 ~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (356)
                      .|.+.                                                                           
T Consensus       101 ~V~~~---------------------------------------------------------------------------  105 (201)
T 1nkr_A          101 VIIGL---------------------------------------------------------------------------  105 (201)
T ss_dssp             EEECS---------------------------------------------------------------------------
T ss_pred             Eeecc---------------------------------------------------------------------------
Confidence            55421                                                                           


Q ss_pred             cceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC
Q psy12422        154 KKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS  233 (356)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~  233 (356)
                                                       ..+|.+...+. ..+.+|++++|.|.+.+ |.+.+.|+|+|..+...
T Consensus       106 ---------------------------------~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~  150 (201)
T 1nkr_A          106 ---------------------------------YEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR  150 (201)
T ss_dssp             ---------------------------------SCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE
T ss_pred             ---------------------------------CCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcc
Confidence                                             22344444343 36889999999999986 56889999999876532


Q ss_pred             CceeEEEeC-CEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        234 NILDLKYKN-GVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       234 ~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      ........+ ....|.|.+++  |+|.|+|.|.+..
T Consensus       151 ~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          151 LPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             cccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            211111111 14689999998  9999999998764

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.90  E-value=4.1e-23  Score=158.79  Aligned_cols=150  Identities=23%  Similarity=0.262  Sum_probs=108.3

Q ss_pred             CCceEEEEEeccCCCC-eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |++++|.|.+.+.|.+ .++|||+|..+...         ...|.|.+++.+|+|.|+|.+.|..+.  ..+.|.|... 
T Consensus        19 G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~~~~~s--~~~~l~V~~~-   86 (176)
T 1f2q_A           19 GENVTLTCNGNNFFEVSSTKWFHNGSLSEET---------NSSLNIVNAKFEDSGEYKCQHQQVNES--EPVYLEVFSD-   86 (176)
T ss_dssp             TCCEEEECCTTCC----CCEEEETTEECSCC---------SSEEEECSCCGGGCEEEEEECTTSSCC--CCEEEEEECS-
T ss_pred             CCcEEEEEeCCCCCCcceEEEEECCeECCCC---------ceEEEEeccceecCEEEEEEcCCcccc--ccEEEEEeCc-
Confidence            7899999999988875 69999999988642         238999999999999999999886543  3344444311 


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                                                                                                      
T Consensus        87 --------------------------------------------------------------------------------   86 (176)
T 1f2q_A           87 --------------------------------------------------------------------------------   86 (176)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeE
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDL  238 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~  238 (356)
                                                    +.+.. .....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+....    
T Consensus        87 ------------------------------~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----  131 (176)
T 1f2q_A           87 ------------------------------WLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----  131 (176)
T ss_dssp             ------------------------------SEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----
T ss_pred             ------------------------------ceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec----
Confidence                                          00000 112357799999999999 567778999999999885321    


Q ss_pred             EEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce-EEEEEEecCC
Q psy12422        239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA-ETKCKLTPLN  281 (356)
Q Consensus       239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~p~~  281 (356)
                          ....|.|.+++.+|+|.|+|.|.|..+.. ...+.|.+..
T Consensus       132 ----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          132 ----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             ----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ----CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEec
Confidence                12389999999999999999999975432 3334554333

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.89  E-value=6.3e-23  Score=163.24  Aligned_cols=80  Identities=14%  Similarity=0.199  Sum_probs=61.2

Q ss_pred             eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEE-eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      ..+.+|+.+.|.|.+.|.|+|.|.|++++..+.......... ....+.|.|.+++.+|+|.|+|.|.|..|.....+.+
T Consensus       128 ~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~  207 (218)
T 4frw_A          128 LEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITH  207 (218)
T ss_dssp             EETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEE
T ss_pred             eeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEE
Confidence            456678899999999999999999999987765433221100 0113579999999999999999999999987666555


Q ss_pred             e
Q psy12422        278 T  278 (356)
Q Consensus       278 ~  278 (356)
                      .
T Consensus       208 ~  208 (218)
T 4frw_A          208 I  208 (218)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.89  E-value=1.7e-22  Score=165.07  Aligned_cols=75  Identities=17%  Similarity=0.196  Sum_probs=58.5

Q ss_pred             ccCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeE
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      ..+....+.+|++++|.|.+.+.|++.+.|+|  +|..+.            ...++.........+|.|.+++.+|+|.
T Consensus       144 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  223 (257)
T 1f3r_B          144 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT  223 (257)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             ccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEE
Confidence            33456678899999999999999989999999  554331            1234444444566789999999999999


Q ss_pred             EEEEEEcCC
Q psy12422        260 YVCTATNSL  268 (356)
Q Consensus       260 Y~C~a~n~~  268 (356)
                      |.|.|.|..
T Consensus       224 Y~C~a~n~~  232 (257)
T 1f3r_B          224 YFCYQYNNG  232 (257)
T ss_dssp             EEEEEESSS
T ss_pred             EEEEEeCCC
Confidence            999999975

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.89  E-value=6.1e-22  Score=158.22  Aligned_cols=168  Identities=16%  Similarity=0.173  Sum_probs=115.0

Q ss_pred             CCceEEEEEeccCCC-----CeeEEeeCCEEccc----------------CCeeEE---ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP-----PTVKWYKGNRELSK----------------RDYSMS---YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-----~~v~W~k~g~~l~~----------------~~~~~~---~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|.|.+.+.|.     +.|.|+|++..+..                .+....   ...+..+|.|.+++.+|+|.|
T Consensus        16 G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   95 (222)
T 3sbw_C           16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVY   95 (222)
T ss_dssp             TSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccccCeEE
Confidence            789999999987774     38999997644311                111111   123557899999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEe
Q psy12422         57 KCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMS  136 (356)
Q Consensus        57 ~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~  136 (356)
                      +|.+.| .+.....+.|.|..++.                                                        
T Consensus        96 ~C~~~~-~~~~~~~~~l~V~~~~~--------------------------------------------------------  118 (222)
T 3sbw_C           96 RCMISY-GGADYKRITVKVNAPYN--------------------------------------------------------  118 (222)
T ss_dssp             EEEEES-SSEEEEEEEEEEEBCCC--------------------------------------------------------
T ss_pred             EEEEEe-CCCceeEEEEEEECCCC--------------------------------------------------------
Confidence            999999 56666677777753211                                                        


Q ss_pred             eccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCC
Q psy12422        137 TLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD  216 (356)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~  216 (356)
                                                                          .|....   ...+.+|+.+.|.|.+.|+
T Consensus       119 ----------------------------------------------------~~~~~~---~~~~~~g~~v~L~C~~~g~  143 (222)
T 3sbw_C          119 ----------------------------------------------------KINQRI---LVVDPVTSEHELTCQAEGY  143 (222)
T ss_dssp             ----------------------------------------------------CCEEEE---EEEETTTTEEEEEEEEEEB
T ss_pred             ----------------------------------------------------CCCcee---eeeecCCCcEEEEEEecCC
Confidence                                                                011100   1145679999999999999


Q ss_pred             CCCeEEEEEC-CEEccCCCceeEEE--eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        217 PEPRVSWTKN-GQPLNSSNILDLKY--KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       217 p~p~i~W~~~-g~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      |.|.+.|+++ |..+..........  ++....+.+..++.+|.|.|+|.|.|..|....++.+...
T Consensus       144 P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          144 PKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             SCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEec
Confidence            9999999998 66554432221111  1112223333556789999999999999999998888744

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.89  E-value=8.7e-23  Score=172.13  Aligned_cols=216  Identities=15%  Similarity=0.174  Sum_probs=138.5

Q ss_pred             ccccccCccceeeeccc--C-CceeeecccccccCCcccc-----CCCCceE--EEEeeccccccccccccCCCccceee
Q psy12422         89 HNFLYSGDRKYIEKHIR--P-APAIITTRQEIKSSYSSHT-----DDTGRTT--TQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        89 ~~~~~~g~~~~l~c~~~--p-~p~i~w~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ...+.+|+.+.|.|.+.  | .+.+.|++++.........     .......  .....+.|.|.|.+.+...       
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g-------   86 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY-------   86 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSC-------
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCce-------
Confidence            44578999999999887  3 5689999987543221100     0001000  0123344555555533211       


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCeecccC---CceeecCCCeEEEEEEE------cCCCCCeEEEEECCEE
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL---TDKTIDDGQCLDLSAVV------KGDPEPRVSWTKNGQP  229 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~v~~g~~~~l~C~~------~g~p~p~i~W~~~g~~  229 (356)
                                   .......+.+    ...+|.+...+   ....+.+|+++.|.|.+      .|+|.|.+.|+++|..
T Consensus        87 -------------~~~~~~~v~v----~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~  149 (315)
T 1itb_B           87 -------------CLRIKISAKF----VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP  149 (315)
T ss_dssp             -------------CCCEECCCEE----ECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEE
T ss_pred             -------------EEEEEEEEEE----eCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEE
Confidence                         0111111111    12333332222   34578899999999998      8999999999999999


Q ss_pred             ccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE-cCCCce---EEEEEEec-----CCCCccc--------------
Q psy12422        230 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT-NSLGTA---ETKCKLTP-----LNSSNIL--------------  286 (356)
Q Consensus       230 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-n~~g~~---~~~~~l~p-----~~~~~~~--------------  286 (356)
                      +...... +....+  .|.|.+++.+|+|.|+|.|. |..|..   ...+.+..     ..+|.+.              
T Consensus       150 l~~~~~~-~~~~~~--~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~  226 (315)
T 1itb_B          150 LLLDNIH-FSGVKD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQ  226 (315)
T ss_dssp             CCCCSSS-EEEETT--EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSC
T ss_pred             CCCccce-EeecCc--eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCc
Confidence            8754322 333344  89999999999999999999 788876   33333310     0111110              


Q ss_pred             -------------eeEEeCC-----------------------------eEEEEEecCCCCC-CeEEEEEEEcCCcceEE
Q psy12422        287 -------------DLKYKNG-----------------------------VASLQIQEVFPED-EGVYVCTATNSLGTAET  323 (356)
Q Consensus       287 -------------~~~~~~~-----------------------------~~~L~i~~v~~~d-~G~Y~C~a~n~~g~~~~  323 (356)
                                   .+.|..+                             .+.|.|.+++.+| +|.|+|.|.|..|..++
T Consensus       227 v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~  306 (315)
T 1itb_B          227 IQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA  306 (315)
T ss_dssp             EEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEE
T ss_pred             EEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeE
Confidence                         3444321                             2389999999999 99999999999999999


Q ss_pred             EEEEEEEe
Q psy12422        324 KCKLTVRS  331 (356)
Q Consensus       324 ~~~l~V~~  331 (356)
                      .+.|.|+.
T Consensus       307 ~~~l~v~~  314 (315)
T 1itb_B          307 YIQLIYPV  314 (315)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEecC
Confidence            99998865

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.89  E-value=1.6e-22  Score=159.07  Aligned_cols=165  Identities=16%  Similarity=0.240  Sum_probs=114.0

Q ss_pred             CCceEEEEEec----cCCCCeeEEeeCCEEcc-------------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGS----TKPPPTVKWYKGNRELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~----g~p~~~v~W~k~g~~l~-------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|.|.|.+.    +.|.+.+.|+|++..+.             ..+... ...+..+|.|.+++.+|+|.|+|.|.|.
T Consensus         9 G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~-~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   87 (201)
T 1dr9_A            9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTYECVVLKY   87 (201)
T ss_dssp             TSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             CCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE-ccCCCcEEEEecccchhCeEEEEEEEcC
Confidence            79999999994    45778999999998873             111111 1223458999999999999999999997


Q ss_pred             Ccee-----EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeec
Q psy12422         64 HGTD-----ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTL  138 (356)
Q Consensus        64 ~g~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (356)
                      .|..     ...+.|.|...+                                                           
T Consensus        88 ~g~~~~~~~~~~~~l~V~~~~-----------------------------------------------------------  108 (201)
T 1dr9_A           88 EKDAFKREHLAEVTLSVKADF-----------------------------------------------------------  108 (201)
T ss_dssp             CTTSCEEEEEEEEEEEEECCC-----------------------------------------------------------
T ss_pred             CCCccccccccEEEEEEcCCC-----------------------------------------------------------
Confidence            6544     244555554320                                                           


Q ss_pred             cccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCC
Q psy12422        139 SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDP  217 (356)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p  217 (356)
                                                                       ..|.+...    ....|+.+.|.|.+ .|+|
T Consensus       109 -------------------------------------------------~~p~~~~~----~~~~g~~~~l~C~~~~g~P  135 (201)
T 1dr9_A          109 -------------------------------------------------PTPSISDF----EIPTSNIRRIICSTSGGFP  135 (201)
T ss_dssp             -------------------------------------------------CCCEEEEE----ECSSTTEEEEEEEEEEESS
T ss_pred             -------------------------------------------------CCCceEec----cCCCCCeEEEEEecCCccC
Confidence                                                             11222111    12348889999999 5999


Q ss_pred             CCeEEEEECCEEccCCCceeEEEeC-CE-EEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        218 EPRVSWTKNGQPLNSSNILDLKYKN-GV-ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       218 ~p~i~W~~~g~~~~~~~~~~~~~~~-~~-~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      .|.|.|+++|..+............ +. ....+..++.+|.|.|+|.|.|..|...+.+.+.
T Consensus       136 ~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~~  198 (201)
T 1dr9_A          136 EPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWN  198 (201)
T ss_dssp             CEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEEC
T ss_pred             CCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEecc
Confidence            9999999999888754332222212 22 2223456667899999999999999988877663

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.89  E-value=2.3e-23  Score=175.06  Aligned_cols=141  Identities=11%  Similarity=0.162  Sum_probs=101.1

Q ss_pred             ccCCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEE-EeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        194 NKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLK-YKNGVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      ..+.......|+.+.|.|.+ .|+|.|.+.|++++..+......... .....+.|.|..+..+|+|.|+|.|.|..+..
T Consensus       119 ~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~  198 (308)
T 4fom_A          119 KGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEK  198 (308)
T ss_dssp             ECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSS
T ss_pred             cccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCC
Confidence            33445556778999999976 78999999999998877533211000 00112479999999999999999999988765


Q ss_pred             EE--EEEEecCCCCccc----------------------------eeEEeC------------CeEEEEEecCCCCCCeE
Q psy12422        272 ET--KCKLTPLNSSNIL----------------------------DLKYKN------------GVASLQIQEVFPEDEGV  309 (356)
Q Consensus       272 ~~--~~~l~p~~~~~~~----------------------------~~~~~~------------~~~~L~i~~v~~~d~G~  309 (356)
                      ..  ++.|.+..+|.+.                            .+.|.+            ++..|.|.+++.+|+|.
T Consensus       199 ~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~  278 (308)
T 4fom_A          199 DIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGV  278 (308)
T ss_dssp             CEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSE
T ss_pred             ceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEE
Confidence            43  3333311111100                            345543            34567789999999999


Q ss_pred             EEEEEEcCCcceEEEEEEEEEecCC
Q psy12422        310 YVCTATNSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       310 Y~C~a~n~~g~~~~~~~l~V~~~p~  334 (356)
                      |+|.|.|..|..++.+.|.|+++|.
T Consensus       279 Y~C~A~N~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          279 YICKVTNSLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             EEEEEEETTEEEEEEEECCEECCC-
T ss_pred             EEEEEEeCCCcEEEEEEEEEEcCCC
Confidence            9999999999999999999999985

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.89  E-value=1.2e-22  Score=161.20  Aligned_cols=168  Identities=14%  Similarity=0.142  Sum_probs=114.6

Q ss_pred             CCceEEEEEeccCC---CCeeEEeeC--CEEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKP---PPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p---~~~v~W~k~--g~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.+.+.|   .+.|.|||+  |..+             ...++.....++..+|+|.+++.+|+|.|.|.+.|
T Consensus        15 G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   94 (212)
T 1q0x_L           15 GETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWS   94 (212)
T ss_dssp             TCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEEEEEEec
Confidence            78999999998887   478999995  2222             02344444456677999999999999999999999


Q ss_pred             CCceeE-EEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecccc
Q psy12422         63 KHGTDE-TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSN  141 (356)
Q Consensus        63 ~~g~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (356)
                      ..+... ....|.|....                                                              
T Consensus        95 ~~~~~~~~~~~l~V~~~~--------------------------------------------------------------  112 (212)
T 1q0x_L           95 NNKLVFGGGTKLTVLGQP--------------------------------------------------------------  112 (212)
T ss_dssp             SSCEEECCCEEEEECCSC--------------------------------------------------------------
T ss_pred             CchhhcCCCeEEEEecCC--------------------------------------------------------------
Confidence            765321 22334442110                                                              


Q ss_pred             ccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCC--
Q psy12422        142 YSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP--  219 (356)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--  219 (356)
                                                                   ..+|.+...+....+.+|+.++|.|.+.|.+++  
T Consensus       113 ---------------------------------------------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~  147 (212)
T 1q0x_L          113 ---------------------------------------------KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVV  147 (212)
T ss_dssp             ---------------------------------------------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCC
T ss_pred             ---------------------------------------------CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCe
Confidence                                                         123444333222234578999999999885443  


Q ss_pred             eEEEEECCEEccCCCcee-EEEe-CC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        220 RVSWTKNGQPLNSSNILD-LKYK-NG----VASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       220 ~i~W~~~g~~~~~~~~~~-~~~~-~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      .|.|+++|..+....... .... ++    .+.|.|..+..+|+|.|+|.|.|.......++
T Consensus       148 ~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v  209 (212)
T 1q0x_L          148 TVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL  209 (212)
T ss_dssp             EEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             EEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence            799999999886542211 1111 11    24799999999999999999999987655554

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.89  E-value=3.3e-22  Score=162.46  Aligned_cols=173  Identities=16%  Similarity=0.207  Sum_probs=116.2

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeCC--EEc------------------ccCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKGN--REL------------------SKRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~g--~~l------------------~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.|.|  .+.|.|||+.  ..+                  ...++.+..  ..+..+|+|.+++.+|+|.|
T Consensus        17 G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y   96 (247)
T 2ghw_B           17 GKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVY   96 (247)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHHHCEEE
Confidence            78999999999887  5789999942  111                  012333332  34567899999999999999


Q ss_pred             EEEEEeCCce--eEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEE
Q psy12422         57 KCVATNKHGT--DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQ  134 (356)
Q Consensus        57 ~C~a~n~~g~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~  134 (356)
                      .|.|.|..+.  ....+.|.|...+.....                                                  
T Consensus        97 ~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~--------------------------------------------------  126 (247)
T 2ghw_B           97 YCARDRSYYLDYWGQGTLVTVSSGGGGSGG--------------------------------------------------  126 (247)
T ss_dssp             EEEEEETTEEEEECCCEEEEECSCC-------------------------------------------------------
T ss_pred             EEeeeccCCccccCCceEEEEecccccccc--------------------------------------------------
Confidence            9999997332  222345665532110000                                                  


Q ss_pred             EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEc
Q psy12422        135 MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVK  214 (356)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~  214 (356)
                                                              ..  +    .....++.+...+....+.+|++++|.|.+.
T Consensus       127 ----------------------------------------~~--~----~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  160 (247)
T 2ghw_B          127 ----------------------------------------GG--S----GGGGSETTLTQSPATLSLSPGERATLSCRAS  160 (247)
T ss_dssp             -----------------------------------------------------CCCCEEEECSEEEECTTSCEEEEEEES
T ss_pred             ----------------------------------------cc--c----CCCCcceEEEccCCEEEecCCCcEEEEEEeC
Confidence                                                    00  0    0002334455555667899999999999999


Q ss_pred             CCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        215 GDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       215 g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      +.|++.+.|+|  +|..+.            ...++.........+|.|.+++.+|+|.|.|.|.|..+
T Consensus       161 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~  229 (247)
T 2ghw_B          161 QSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWP  229 (247)
T ss_dssp             SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSS
T ss_pred             CCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCC
Confidence            99999999999  554331            12334333345567899999999999999999998643

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.89  E-value=6.9e-23  Score=164.74  Aligned_cols=157  Identities=18%  Similarity=0.325  Sum_probs=112.7

Q ss_pred             CCceEEEEEeccCCC-CeeEEeeCCEEcc----------cCCe--eE-----------EecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP-PTVKWYKGNRELS----------KRDY--SM-----------SYSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-~~v~W~k~g~~l~----------~~~~--~~-----------~~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|.|.+.+.|. +.+.|+|++....          ...+  .+           ...++  .|.|.+++.+|+|.|
T Consensus        15 G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y   92 (231)
T 2pet_A           15 GKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG--RLVLAEAQVGDERDY   92 (231)
T ss_dssp             TCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC--CEEESSCCGGGCEEE
T ss_pred             CCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc--eEEEcccCcccCceE
Confidence            789999999999985 8999998543311          0101  11           22233  499999999999999


Q ss_pred             EEEEEeCC-ceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEE
Q psy12422         57 KCVATNKH-GTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQM  135 (356)
Q Consensus        57 ~C~a~n~~-g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~  135 (356)
                      +|.+.|.. +.....+.|.|...+.                                                       
T Consensus        93 ~C~~~~~~~~~~~~~~~l~V~~~p~-------------------------------------------------------  117 (231)
T 2pet_A           93 VCVVRAGAAGTAEATARLNVFAKPE-------------------------------------------------------  117 (231)
T ss_dssp             EEEEECGGGCEEEEEEEEEEEBCCC-------------------------------------------------------
T ss_pred             EEEEEecCCCceEEEEEEEEEecCC-------------------------------------------------------
Confidence            99999986 7777777887764311                                                       


Q ss_pred             eeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeE-EEEEEE-
Q psy12422        136 STLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCL-DLSAVV-  213 (356)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~-~l~C~~-  213 (356)
                                                                           .|.+...+....+.+|+.+ .|.|.+ 
T Consensus       118 -----------------------------------------------------~~~~~~~~~~~~~~~g~~~~~l~C~~~  144 (231)
T 2pet_A          118 -----------------------------------------------------ATEVSPNKGTLSVMEDSAQEIATCNSR  144 (231)
T ss_dssp             -----------------------------------------------------CCEEEECCSSCCTTCCSEEEEEEEEEE
T ss_pred             -----------------------------------------------------CcEEecCCcceeecCCCceEEEEEEeE
Confidence                                                                 1333333344456789987 999999 


Q ss_pred             cCCCCCeEEEEECCEEccCCC----ceeEEEe----C-C----EEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        214 KGDPEPRVSWTKNGQPLNSSN----ILDLKYK----N-G----VASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       214 ~g~p~p~i~W~~~g~~~~~~~----~~~~~~~----~-~----~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .|+|.|.+.|+++|..+....    +..+...    . +    .+.|.|.....+|+|.|+|.|.|.
T Consensus       145 ~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          145 NGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             EEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            899999999999999987655    3322211    1 1    156888866666799999999994

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.89  E-value=3.3e-22  Score=166.39  Aligned_cols=216  Identities=18%  Similarity=0.202  Sum_probs=135.5

Q ss_pred             cccccccCccceeeecccCCceeeecccccccCCccccCCCCceEE---EEeeccccccccccccCCCccceeeeeeccc
Q psy12422         88 AHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTT---QMSTLSSNYSSSTNNATSPSKKITRRMNSIL  164 (356)
Q Consensus        88 ~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (356)
                      ....+.+|+.+.|.|.+..  .+.|+++........... ......   ....+.|.|.|...+..              
T Consensus        12 ~~~~v~~G~~v~L~C~~~~--~v~W~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~--------------   74 (289)
T 3ejj_X           12 PELVVEPGETVTLRCVSNG--SVEWDGPISPYWTLDPES-PGSTLTTRNATFKNTGTYRCTELEDP--------------   74 (289)
T ss_dssp             SEEEECTTCCEEEEEECSS--CCEEECSCSSSSEECCCS-SCCEEEESSCCGGGCEEEEEECCC----------------
T ss_pred             ceEEECCCCCEEEEEEeCC--cEEEccCCCceEEEeccC-CccEEEEeeeccccCEEEEEEEeccC--------------
Confidence            3445789999999999987  599996654322111111 111111   12233444555432211              


Q ss_pred             cCCCCCcccccceeeecCCCCCCCCCe-ecccCCceeecCCCeEEEEEEEcCCCCCe-EEEEE-CCEEccCCCceeEEEe
Q psy12422        165 DTDSPSRSRSTTKELIMPPDTAMTPPQ-FANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTK-NGQPLNSSNILDLKYK  241 (356)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~-~g~~~~~~~~~~~~~~  241 (356)
                        +    .......+.+.     .+|. +...+....+.+|+.+.|.|.+.+.|.+. +.|++ ++..+.....+... .
T Consensus        75 --~----~~~~~~~l~V~-----~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~  142 (289)
T 3ejj_X           75 --M----AGSTTIHLYVK-----DPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFS-P  142 (289)
T ss_dssp             ---------CEEEEEEEC-----CSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEE-T
T ss_pred             --C----cceeEEEEEEe-----CCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEEC-C
Confidence              1    12233444442     2222 45555778899999999999999877765 99986 77777655554432 2


Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEE-cCCCceEEEEEEecC----CCCccc---------------------------eeE
Q psy12422        242 NGVASLQIQEVFPEDEGVYVCTAT-NSLGTAETKCKLTPL----NSSNIL---------------------------DLK  289 (356)
Q Consensus       242 ~~~~~L~i~~v~~~d~G~Y~C~a~-n~~g~~~~~~~l~p~----~~~~~~---------------------------~~~  289 (356)
                      .+  .|.|.+++.+|+|.|+|.|. |..+.....+.+...    .++.+.                           .+.
T Consensus       143 ~~--~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~  220 (289)
T 3ejj_X          143 WR--GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVI  220 (289)
T ss_dssp             TT--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEE
T ss_pred             CC--CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEE
Confidence            22  69999999999999999999 444433333333311    111111                           344


Q ss_pred             EeC-------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422        290 YKN-------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       290 ~~~-------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  334 (356)
                      |..                   ..+.|.|.+++.+|+|.|+|.|.|..|..++++.|.+..++.
T Consensus       221 W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~  284 (289)
T 3ejj_X          221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH  284 (289)
T ss_dssp             EEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC----
T ss_pred             EEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccc
Confidence            432                   156899999999999999999999999999999999887764

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.89  E-value=5.7e-22  Score=154.55  Aligned_cols=154  Identities=16%  Similarity=0.241  Sum_probs=106.4

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeCCEEcc---cCC------------e--eEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKGNRELS---KRD------------Y--SMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~g~~l~---~~~------------~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.+.+ .|.+.|.|+|+|..+.   ...            +  +.... ...+|+|.+++.+|+|.|+|.+.|
T Consensus        13 G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~   91 (193)
T 2if7_A           13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-QSYSLQLSNLKMEDTGSYRAQIST   91 (193)
T ss_dssp             TSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-TTCCEEECSCCGGGCEEEEEEEEC
T ss_pred             cCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-CCeEEEECCCCcccCceEEEEEEe
Confidence            799999999965 5567999999987652   100            0  11111 234799999999999999999999


Q ss_pred             CCceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccc
Q psy12422         63 KHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNY  142 (356)
Q Consensus        63 ~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (356)
                      ..+.....+.|.|...+..                                                             
T Consensus        92 ~~~~~~~~~~L~V~~~~~~-------------------------------------------------------------  110 (193)
T 2if7_A           92 KTSAKLSSYTLRILRQLRN-------------------------------------------------------------  110 (193)
T ss_dssp             SSCEEEEEEEEEEECCCEE-------------------------------------------------------------
T ss_pred             cCCCeEEEEEEEEEccCCC-------------------------------------------------------------
Confidence            9887777777777543110                                                             


Q ss_pred             cccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCC-eEEEEEEEcCC-CCCe
Q psy12422        143 SSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQ-CLDLSAVVKGD-PEPR  220 (356)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~-~~~l~C~~~g~-p~p~  220 (356)
                                                                     |.+....  .....|. .++|.|.+.|. |.|.
T Consensus       111 -----------------------------------------------p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~  141 (193)
T 2if7_A          111 -----------------------------------------------IQVTNHS--QLFQNMTCELHLTCSVEDADDNVS  141 (193)
T ss_dssp             -----------------------------------------------EEEEECC--C---CSSEEEEEEEEEESCCTTCE
T ss_pred             -----------------------------------------------CeEecCc--eeecCCCceEEEEEEEecCCCceE
Confidence                                                           1111111  0123455 79999999885 5789


Q ss_pred             EEEEECCEEccCCCceeEEEeCCEEEEEEccCCCC-CCeEEEEEEEcCCCceEEEEE
Q psy12422        221 VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPE-DEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       221 i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      +.|+++|..+....           .|.|.....+ |+|.|+|.|.|..|.....+.
T Consensus       142 i~W~~~g~~l~~~~-----------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~  187 (193)
T 2if7_A          142 FRWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAVSNLSFSVS  187 (193)
T ss_dssp             EEEEETTEEEESSS-----------EEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCEEcCCCC-----------eEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence            99999998764322           4666554554 899999999999998765443

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.89  E-value=2e-23  Score=183.98  Aligned_cols=248  Identities=12%  Similarity=0.107  Sum_probs=143.8

Q ss_pred             CCceEEEEEeccC-CCC-eeEEeeCCEEcccCCeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTK-PPP-TVKWYKGNRELSKRDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~-~v~W~k~g~~l~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |++++|.|.+.|. |.| .|+|+|+|..+...........+.    ..|+|.+++.+| |.|+|.|.|..|.......+.
T Consensus       134 G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~  212 (434)
T 1igy_B          134 NSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIV  212 (434)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECC
T ss_pred             CCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeecc
Confidence            7899999999876 776 999999987642110000011121    368999999889 999999999988754444443


Q ss_pred             Eec---------cccchhh-hhhcc-c-ccccCccceeeecccC------CceeeecccccccCCcccc----CCCCc--
Q psy12422         75 VES---------EEESKEQ-QELAH-N-FLYSGDRKYIEKHIRP------APAIITTRQEIKSSYSSHT----DDTGR--  130 (356)
Q Consensus        75 v~~---------~~~~~~~-~~~~~-~-~~~~g~~~~l~c~~~p------~p~i~w~~~~~~~~~~~~~----~~~~~--  130 (356)
                      +.+         ....+.. ...+. . .+.+|+.+.|.|.+..      .+.+.|++++..+......    ...+.  
T Consensus       213 ~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~  292 (434)
T 1igy_B          213 PRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFR  292 (434)
T ss_dssp             CCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCC
T ss_pred             CCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEE
Confidence            321         0000110 11111 1 2789999999999872      2369999988665322110    00000  


Q ss_pred             ---eEEE---EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCC
Q psy12422        131 ---TTTQ---MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDG  204 (356)
Q Consensus       131 ---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g  204 (356)
                         ....   ...+.+.|.|.+.+.....                    .....+.+.. ....+|.+...+......+|
T Consensus       293 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~--------------------~~~~~v~~~~-~~~~~P~v~~~~~~~~~~~~  351 (434)
T 1igy_B          293 VVSALPIMHQDWLNGKEFKCRVNSAAFPA--------------------PIEKTISKTK-GKPRAPQVYTIPPPKEQMAK  351 (434)
T ss_dssp             CCCCEECCHHHHHHTCCCBCCBCCSSCSS--------------------CCCCCCCCCC-SCCBCCCCEEECCCSSSSSS
T ss_pred             EEEEEEECHHHccCCCcEEEEEECCCCCC--------------------ceeEEEeccC-CCCcCCEEEEECCCHHHhcC
Confidence               0011   1224466776664433211                    0011111100 11345655544433334467


Q ss_pred             CeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeE--EEeCC---EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        205 QCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDL--KYKNG---VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       205 ~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~--~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      +.++|.|.+.|. |+ +.|+|+|+|..+........  ..++.   .+.|.|.....+|+|.|+|.|.|....
T Consensus       352 ~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          352 DKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             SEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             CcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence            789999999885 43 37999999988753221111  11111   246788888888999999999998764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.89  E-value=4.1e-22  Score=168.98  Aligned_cols=213  Identities=16%  Similarity=0.123  Sum_probs=136.3

Q ss_pred             ccccCccceeeeccc-----------CCceeeecccccccCCccccCCCCceE--EEEeeccc-cccccccccCCCccce
Q psy12422         91 FLYSGDRKYIEKHIR-----------PAPAIITTRQEIKSSYSSHTDDTGRTT--TQMSTLSS-NYSSSTNNATSPSKKI  156 (356)
Q Consensus        91 ~~~~g~~~~l~c~~~-----------p~p~i~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~  156 (356)
                      .+.+|+.+.|.|.+.           |.+.+.|++++................  .....+.| .|.|.+.+..+...  
T Consensus        40 ~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~--  117 (329)
T 3oq3_B           40 MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCV--  117 (329)
T ss_dssp             EECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSCEE--
T ss_pred             EEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCcee--
Confidence            467999999999975           335799999887654321111111111  11233456 56666544332110  


Q ss_pred             eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCC-CCeEEEEECCEEccCCCc
Q psy12422        157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTKNGQPLNSSNI  235 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~~g~~~~~~~~  235 (356)
                                       .....+.+     ..+|.+........+.+|+.+.|.|.+.|.| .|.+.|+++|..+.....
T Consensus       118 -----------------~~~~~~v~-----~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~  175 (329)
T 3oq3_B          118 -----------------QGIVRSHI-----RKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT  175 (329)
T ss_dssp             -----------------EEEEEEEE-----CCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSS
T ss_pred             -----------------eEEEEEEE-----cCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCc
Confidence                             00111112     2234443333344567899999999999999 899999999999864332


Q ss_pred             eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC--CCceEEE----EEEecCCC---------------------------
Q psy12422        236 LDLKYKNGVASLQIQEVFPEDEGVYVCTATNS--LGTAETK----CKLTPLNS---------------------------  282 (356)
Q Consensus       236 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~--~g~~~~~----~~l~p~~~---------------------------  282 (356)
                      . +...+  ..|.|.+++.+|+|.|+|.|.|.  .|.....    +.|.+...                           
T Consensus       176 ~-~~~~~--~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~  252 (329)
T 3oq3_B          176 K-YSQSG--QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTA  252 (329)
T ss_dssp             S-EEEET--TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEE
T ss_pred             e-EecCC--CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEE
Confidence            2 22223  38999999999999999999997  6543332    32321100                           


Q ss_pred             ---C---ccceeEEeC----------------------CeEEEEEecCCCCCCe-EEEEEEEcCCcceEEEEEEEEE
Q psy12422        283 ---S---NILDLKYKN----------------------GVASLQIQEVFPEDEG-VYVCTATNSLGTAETKCKLTVR  330 (356)
Q Consensus       283 ---~---~~~~~~~~~----------------------~~~~L~i~~v~~~d~G-~Y~C~a~n~~g~~~~~~~l~V~  330 (356)
                         |   ....+.|..                      ....|.|.+++.+|+| .|+|.|.|..|.....+.|.|+
T Consensus       253 ~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v~  329 (329)
T 3oq3_B          253 VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE  329 (329)
T ss_dssp             EETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEeC
Confidence               0   000235533                      1467999999999999 9999999999999999998874

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.89  E-value=8.9e-23  Score=161.75  Aligned_cols=167  Identities=16%  Similarity=0.177  Sum_probs=117.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++|+|.|.+.  |.+.+.|||+  |..+             ...++......+..+|+|.+++.+|+|.|.|.+.|..+
T Consensus        15 G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   92 (211)
T 3tv3_L           15 GQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNW   92 (211)
T ss_dssp             TCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTT
T ss_pred             CCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEEEecCCC
Confidence            78999999998  8899999994  3222             11244444456677999999999999999999999877


Q ss_pred             --eeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecccccc
Q psy12422         66 --TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYS  143 (356)
Q Consensus        66 --~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (356)
                        .....+.|.|...+                                                                
T Consensus        93 ~~~~~~~~~l~V~~~~----------------------------------------------------------------  108 (211)
T 3tv3_L           93 DVIFGGGTKLTVLGQP----------------------------------------------------------------  108 (211)
T ss_dssp             EEEECCCEEEEECCSC----------------------------------------------------------------
T ss_pred             ceeECCCceEEEeCCC----------------------------------------------------------------
Confidence              23344555554210                                                                


Q ss_pred             ccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCC--CCeE
Q psy12422        144 SSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP--EPRV  221 (356)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p--~p~i  221 (356)
                                                                 ..+|.+...+....+.+|+.++|.|.+.|.+  .+.+
T Consensus       109 -------------------------------------------~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v  145 (211)
T 3tv3_L          109 -------------------------------------------KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTV  145 (211)
T ss_dssp             -------------------------------------------CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEE
T ss_pred             -------------------------------------------CcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEE
Confidence                                                       2334444444333445799999999998853  4789


Q ss_pred             EEEECCEEccCCCcee--EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        222 SWTKNGQPLNSSNILD--LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       222 ~W~~~g~~~~~~~~~~--~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      .|+++|..+.......  .....+    .+.|.|.++..+|+|.|+|.|.|..+....++.
T Consensus       146 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          146 AWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             EEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             EEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence            9999999886521111  011111    257999999999999999999999987766553

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.89  E-value=8.9e-23  Score=162.60  Aligned_cols=169  Identities=17%  Similarity=0.211  Sum_probs=112.9

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeCC--EE-------------cc----cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKGN--RE-------------LS----KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~g--~~-------------l~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|.+.+. |.+.|.|||+.  ..             ..    ..++......+..+|+|.+++.+|+|.|.|.+
T Consensus        15 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   94 (218)
T 3s96_B           15 GASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEAIYICGV   94 (218)
T ss_dssp             TSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCEEEEEEE
Confidence            7999999999988 89999999931  11             00    02333333556678999999999999999999


Q ss_pred             EeCCc-----eeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEE
Q psy12422         61 TNKHG-----TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQM  135 (356)
Q Consensus        61 ~n~~g-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~  135 (356)
                      .|..|     .....+.|.|...+                                                        
T Consensus        95 ~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------------------------  118 (218)
T 3s96_B           95 GDTIKEQFVYVFGGGTKVTVLGQP--------------------------------------------------------  118 (218)
T ss_dssp             EEEETTEEEEEECCCEEEEEESCC--------------------------------------------------------
T ss_pred             ecCCCCceeEEEcCcEEEEEecCC--------------------------------------------------------
Confidence            98765     22233455554210                                                        


Q ss_pred             eeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC
Q psy12422        136 STLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG  215 (356)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g  215 (356)
                                                                         ..+|.+...+....+..|+.++|.|.+.|
T Consensus       119 ---------------------------------------------------~~~P~~~~~~~~~~~~~~~~v~L~C~~~g  147 (218)
T 3s96_B          119 ---------------------------------------------------KSTPTLTVFPPSSEELKENKATLVCLISN  147 (218)
T ss_dssp             ---------------------------------------------------CBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred             ---------------------------------------------------CCCceEEeeCCCcccccCCcEEEEEEECc
Confidence                                                               12344433232334456789999999987


Q ss_pred             -CCCC-eEEEEECCEEccCCCceeE--EEeCC---EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        216 -DPEP-RVSWTKNGQPLNSSNILDL--KYKNG---VASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       216 -~p~p-~i~W~~~g~~~~~~~~~~~--~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                       .|.| .|.|+++|..+........  ..++.   .+.|.|.....+|+|.|+|.|.|..+....++.
T Consensus       148 ~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  215 (218)
T 3s96_B          148 FSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSLS  215 (218)
T ss_dssp             EBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEEC
T ss_pred             ccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccccc
Confidence             6777 8999999998875321110  11111   135889999889999999999999987766543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.88  E-value=7.8e-22  Score=161.72  Aligned_cols=148  Identities=20%  Similarity=0.273  Sum_probs=116.1

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+ .+.|.+.+.|+|+|..+...     ..+  ..|.|.+++.+|+|.|+|.+.|..+..+..+.|.|... 
T Consensus        97 g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----~~~--~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~-  168 (262)
T 3rjd_A           97 GEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----HWN--SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL-  168 (262)
T ss_dssp             TSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----EEC--CCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS-
T ss_pred             CCeEEEEEEccCCCCCceEEEEECCcccccc-----CCC--CeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC-
Confidence            7899999999 78888999999999987522     112  27999999999999999999999988777788877642 


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (262)
T 3rjd_A          169 --------------------------------------------------------------------------------  168 (262)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC-Ce----EEEEECCEEccCCC
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE-PR----VSWTKNGQPLNSSN  234 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~----i~W~~~g~~~~~~~  234 (356)
                                                 ..+|.+...+ ...+.+|+.+.|.|.+.+.|. |.    +.|++++..+... 
T Consensus       169 ---------------------------~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~-  219 (262)
T 3rjd_A          169 ---------------------------FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR-  219 (262)
T ss_dssp             ---------------------------SCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE-
T ss_pred             ---------------------------CCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc-
Confidence                                       1223333333 345788999999999999986 54    7889999877521 


Q ss_pred             ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        235 ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       235 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                             .....|.|.+++.+|+|.|+|.|.|..|...
T Consensus       220 -------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~  250 (262)
T 3rjd_A          220 -------NTSSEYQILTARREDSGLYWCEAATEDGNVL  250 (262)
T ss_dssp             -------ESCCEEEESSCCGGGCEEEEEEEEETTSSCE
T ss_pred             -------CCCceEEEEEechhhCeEEEEEEEcccCceE
Confidence                   1234899999999999999999999999753

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.88  E-value=5.4e-22  Score=155.02  Aligned_cols=144  Identities=32%  Similarity=0.534  Sum_probs=115.9

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC--ceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....  .......++...|.|.+++.+|+|.|+|.|
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (194)
T 2a38_A            3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA   82 (194)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEE
Confidence            346778777888899999999999999999999999999998887653  455666677889999999999999999999


Q ss_pred             EcCCCceEEEEEEecC---CCCccc--------------------------eeEEeC-----------------CeEEEE
Q psy12422        265 TNSLGTAETKCKLTPL---NSSNIL--------------------------DLKYKN-----------------GVASLQ  298 (356)
Q Consensus       265 ~n~~g~~~~~~~l~p~---~~~~~~--------------------------~~~~~~-----------------~~~~L~  298 (356)
                      .|..|.......+...   .++.+.                          .+.|..                 ....|.
T Consensus        83 ~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~  162 (194)
T 2a38_A           83 TNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLL  162 (194)
T ss_dssp             EETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEE
T ss_pred             EcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEE
Confidence            9999887766555421   111110                          344432                 223799


Q ss_pred             EecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy12422        299 IQEVFPEDEGVYVCTATNSLGTAETKCKLTVR  330 (356)
Q Consensus       299 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  330 (356)
                      |.+++.+|+|.|+|.|.|..|..+..+.|.|+
T Consensus       163 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          163 IAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            99999999999999999999999999999885

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.88  E-value=5.1e-22  Score=167.25  Aligned_cols=148  Identities=14%  Similarity=0.211  Sum_probs=106.3

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeCC---EEEEEEccCCCCCCeEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNG---VASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C  262 (356)
                      ..+|.+...+....+..|+.+.|.|.+ .++|.|.+.|++++..+..........++.   .+.|.|.....+|+|.|+|
T Consensus       115 ~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C  194 (313)
T 4fqp_A          115 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTC  194 (313)
T ss_dssp             BBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEE
T ss_pred             ccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEE
Confidence            455666665666677888999999987 588999999999987765432221111111   2469999999999999999


Q ss_pred             EEEcCCCceEE--EEEEecCCCCcc----------------------------ceeEEeC-----------CeEEEEEec
Q psy12422        263 TATNSLGTAET--KCKLTPLNSSNI----------------------------LDLKYKN-----------GVASLQIQE  301 (356)
Q Consensus       263 ~a~n~~g~~~~--~~~l~p~~~~~~----------------------------~~~~~~~-----------~~~~L~i~~  301 (356)
                      .|.|..+....  .+.|....+|.+                            ..+.|..           .+..|.|.+
T Consensus       195 ~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~  274 (313)
T 4fqp_A          195 KVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRP  274 (313)
T ss_dssp             EEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECC
T ss_pred             EEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECc
Confidence            99998775433  333321111110                            0355653           225799999


Q ss_pred             CCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422        302 VFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       302 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  334 (356)
                      ++.+|+|.|+|.|.|..|..+..+.|.|+++|.
T Consensus       275 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP  307 (313)
T 4fqp_A          275 VDKPINTTLICNVTNALGARQAELTVQVKEGPP  307 (313)
T ss_dssp             CSSCCEEEEEEEEECSSCEEEEEEEEEEECCC-
T ss_pred             CChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCC
Confidence            999999999999999999999999999998764

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.88  E-value=1.5e-21  Score=154.86  Aligned_cols=149  Identities=28%  Similarity=0.505  Sum_probs=116.0

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEcc-CCCceeEEE-eCCEEEEEEccCCC-CCCeEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN-SSNILDLKY-KNGVASLQIQEVFP-EDEGVYVCT  263 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~-~~~~~~~~~-~~~~~~L~i~~v~~-~d~G~Y~C~  263 (356)
                      ..||.+...+....+.+|+.+.|.|.+.|+|.+.+.|+++|..+. ...++.... .++...|.|.+++. +|+|.|+|.
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence            567889888989999999999999999999999999999999987 344444433 35568999999999 999999999


Q ss_pred             EEcCCCc-eEEEEEEecCCC-------Cccc--------------------------eeEEeCC--------------eE
Q psy12422        264 ATNSLGT-AETKCKLTPLNS-------SNIL--------------------------DLKYKNG--------------VA  295 (356)
Q Consensus       264 a~n~~g~-~~~~~~l~p~~~-------~~~~--------------------------~~~~~~~--------------~~  295 (356)
                      |.|..|. ....+.|.+...       +.+.                          .+.|..+              .+
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~  163 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG  163 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETT
T ss_pred             EEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCC
Confidence            9999998 555555552211       1111                          3455431              23


Q ss_pred             EEEEecCCCCCCeEEEEEEEcCCcceEEE-EEEEEEecCCC
Q psy12422        296 SLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTVRSTPAA  335 (356)
Q Consensus       296 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p~~  335 (356)
                      .|.|.+++.+|+|.|+|.|.|..|...+. +.|.|++++.-
T Consensus       164 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~  204 (212)
T 2yd1_A          164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG  204 (212)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C
T ss_pred             eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecccc
Confidence            79999999999999999999999999874 89999988653

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.88  E-value=6.9e-23  Score=181.07  Aligned_cols=245  Identities=12%  Similarity=0.125  Sum_probs=141.1

Q ss_pred             CCceEEEEEeccC-CCC-eeEEeeCCEEccc--CCeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422          1 MQNVIKVKVGSTK-PPP-TVKWYKGNRELSK--RDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTDETNCV   72 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~-~v~W~k~g~~l~~--~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   72 (356)
                      |+++.|.|.+.|. |.| .|+|+|+|..+..  ... ... .+.    ..|+|.+++.+| |.|+|.|.|..+.......
T Consensus       138 g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~-~~~-~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~  214 (444)
T 1igt_B          138 GSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA-VLQ-SDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKK  214 (444)
T ss_dssp             SSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EEE-TTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEE
T ss_pred             CCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCc-ccc-CCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEE
Confidence            7899999999874 776 9999999886421  111 111 121    368999999899 9999999999887654444


Q ss_pred             EEEecc-------------c--cchhh-hhhcc-cc-cccCccceeeeccc--C----CceeeecccccccCCccccC--
Q psy12422         73 VIVESE-------------E--ESKEQ-QELAH-NF-LYSGDRKYIEKHIR--P----APAIITTRQEIKSSYSSHTD--  126 (356)
Q Consensus        73 l~v~~~-------------~--~~~~~-~~~~~-~~-~~~g~~~~l~c~~~--p----~p~i~w~~~~~~~~~~~~~~--  126 (356)
                      +.+.+.             .  ..+.. ...+. .. +.+|+.+.|.|.+.  +    .+.+.|++++..+.......  
T Consensus       215 i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~  294 (444)
T 1igt_B          215 IEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHR  294 (444)
T ss_dssp             CCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCE
T ss_pred             eccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccce
Confidence            433110             0  01110 11111 12 58899999999986  2    24799999886654321110  


Q ss_pred             --CCCce-E---EE----EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC
Q psy12422        127 --DTGRT-T---TQ----MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL  196 (356)
Q Consensus       127 --~~~~~-~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  196 (356)
                        ..+.. .   ..    ...+.+.|.|.+.+.....                    .....+.+. .....+|.+...+
T Consensus       295 ~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~--------------------~~~~~v~~~-~~~~~~P~v~~~~  353 (444)
T 1igt_B          295 EDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA--------------------PIERTISKP-KGSVRAPQVYVLP  353 (444)
T ss_dssp             EECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS--------------------CEEEEEECC-CCCCBCCEEEEEC
T ss_pred             eCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC--------------------ceEEEEecc-CCCCCCCEEEEeC
Confidence              00000 0   00    1123355555543322211                    011122110 1114566665443


Q ss_pred             C-ceeecCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeEE-EeCC----EEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        197 T-DKTIDDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDLK-YKNG----VASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       197 ~-~~~v~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      . ...+. +..++|.|.+.| +|++ .|+|+++|..+......... ..++    .+.|.|.....+|.|.|+|+|.|..
T Consensus       354 ~~~~~~~-~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~  432 (444)
T 1igt_B          354 PPEEEMT-KKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG  432 (444)
T ss_dssp             CCGGGTT-SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             CChHHcc-CCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCC
Confidence            2 22334 445999999988 5665 89999999988432111111 1122    1457777777788999999999986


Q ss_pred             Cc
Q psy12422        269 GT  270 (356)
Q Consensus       269 g~  270 (356)
                      -.
T Consensus       433 l~  434 (444)
T 1igt_B          433 LH  434 (444)
T ss_dssp             SG
T ss_pred             cC
Confidence            43

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.88  E-value=8.7e-22  Score=154.20  Aligned_cols=146  Identities=25%  Similarity=0.426  Sum_probs=120.3

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..........++....|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            45678888888899999999999999999999999999999999888777777777778999999999999999999999


Q ss_pred             CCCceEEEEEEe----cCCCC-----c-cc-------------------eeEEeC-----------------CeEEEEEe
Q psy12422        267 SLGTAETKCKLT----PLNSS-----N-IL-------------------DLKYKN-----------------GVASLQIQ  300 (356)
Q Consensus       267 ~~g~~~~~~~l~----p~~~~-----~-~~-------------------~~~~~~-----------------~~~~L~i~  300 (356)
                      ..|.......+.    |....     . ..                   .+.|..                 ....|.|.
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~  164 (197)
T 3lcy_A           85 EVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMK  164 (197)
T ss_dssp             SSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEES
T ss_pred             CCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEc
Confidence            999877766665    11110     0 00                   344432                 22679999


Q ss_pred             cCCC-CCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy12422        301 EVFP-EDEGVYVCTATNSLGTAETKCKLTVRST  332 (356)
Q Consensus       301 ~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  332 (356)
                      ++.. +|+|.|+|.|.|..|..+..+.|.|+++
T Consensus       165 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~k  197 (197)
T 3lcy_A          165 NVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK  197 (197)
T ss_dssp             SCCHHHHCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             cccchhhCceEEEEEEcCcCceEEEEEEEEecC
Confidence            9995 8999999999999999999999999763

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.88  E-value=5.5e-22  Score=159.83  Aligned_cols=153  Identities=12%  Similarity=0.109  Sum_probs=109.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee--EEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD--ETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~--~~~~~l~v~~~   78 (356)
                      |++|+|.|.+.+ +.+.+.|||+|..+...............|.|.+++.+|+|.|+|.+.|..+..  +..+.|.|.+.
T Consensus        21 G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~   99 (242)
T 1p6f_A           21 EKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEM   99 (242)
T ss_dssp             TCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECC
T ss_pred             CCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecc
Confidence            789999999865 356899999998775211001122334589999999999999999998864432  23355555421


Q ss_pred             ccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                                                                                                      
T Consensus       100 --------------------------------------------------------------------------------   99 (242)
T 1p6f_A          100 --------------------------------------------------------------------------------   99 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~  238 (356)
                                                  ..+|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+..    ..
T Consensus       100 ----------------------------~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~  145 (242)
T 1p6f_A          100 ----------------------------YDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QR  145 (242)
T ss_dssp             ----------------------------SCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EE
T ss_pred             ----------------------------cCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----cc
Confidence                                        2234444333 2358899999999999764 468999999876543    12


Q ss_pred             EEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        239 KYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      ........|.|.+++.+|+|.|+|.|.|..
T Consensus       146 ~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~  175 (242)
T 1p6f_A          146 GYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  175 (242)
T ss_dssp             EECSSEEEEEEEECCGGGCEEEEEEEEEET
T ss_pred             cCCCceEEEEeCCCccccCEEEEEEEECCC
Confidence            233456789999999999999999999864

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.88  E-value=1.5e-21  Score=159.32  Aligned_cols=158  Identities=19%  Similarity=0.211  Sum_probs=111.6

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEcc------------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NRELS------------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l~------------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.|.|  .+.|.|||+  +..+.                  ..++.+..  ..+..+|+|.+++.+|+|.|
T Consensus        15 G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y   94 (256)
T 1nqb_A           15 GASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVY   94 (256)
T ss_dssp             TCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChhhCEEE
Confidence            78999999998876  678999994  32210                  12333332  24567999999999999999


Q ss_pred             EEEEEeCCce-----eEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCce
Q psy12422         57 KCVATNKHGT-----DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRT  131 (356)
Q Consensus        57 ~C~a~n~~g~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~  131 (356)
                      .|.+.|..|.     ....+.|.|.                                                       
T Consensus        95 ~C~~~n~~g~~~~~~~~~~~~L~V~-------------------------------------------------------  119 (256)
T 1nqb_A           95 YCARYDYYGSSYFDYWGQGTTVTVS-------------------------------------------------------  119 (256)
T ss_dssp             EEEECCTTSSSSCSEECCCEEEEEC-------------------------------------------------------
T ss_pred             EEEEeeccCccceeEEcCceeeeec-------------------------------------------------------
Confidence            9999987552     1111223322                                                       


Q ss_pred             EEEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEE
Q psy12422        132 TTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSA  211 (356)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C  211 (356)
                                                                              .+|.+...+....+.+|++++|.|
T Consensus       120 --------------------------------------------------------~~~~v~~~p~~~~v~~G~~v~L~C  143 (256)
T 1nqb_A          120 --------------------------------------------------------SDIELTQTPLSLPVSLGDQASISC  143 (256)
T ss_dssp             --------------------------------------------------------CCCCEEEECSEEEECTTCCEEEEE
T ss_pred             --------------------------------------------------------ccccEEecCcEEEEecCCcEEEEe
Confidence                                                                    123333344556789999999999


Q ss_pred             EEcCCCCC-----eEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        212 VVKGDPEP-----RVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       212 ~~~g~p~p-----~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      .+.+.|++     .+.|+|  +|..+.            ...++.........+|.|.+++.+|+|.|.|.|.|...
T Consensus       144 ~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~  220 (256)
T 1nqb_A          144 RSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVP  220 (256)
T ss_dssp             EESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             EecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCc
Confidence            99998875     899999  554331            12344444455667899999999999999999998543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.88  E-value=1.1e-22  Score=162.57  Aligned_cols=84  Identities=18%  Similarity=0.323  Sum_probs=62.1

Q ss_pred             eecCCCeEEEEEEE-cCCCCCeEEEEE-CCEEccCCCceeEEEe--CCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        200 TIDDGQCLDLSAVV-KGDPEPRVSWTK-NGQPLNSSNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       200 ~v~~g~~~~l~C~~-~g~p~p~i~W~~-~g~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      .+.+|+.+.|.|.+ .|+|.|.+.|++ ++..+...........  +....|.|.+++.+|+|.|+|.|.|..|....++
T Consensus       121 ~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  200 (222)
T 4i0k_A          121 DLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHG  200 (222)
T ss_dssp             ---CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEE
T ss_pred             eecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEE
Confidence            57789999999999 899999999999 5555543322222211  2235689999999999999999999999999998


Q ss_pred             EEecCCCC
Q psy12422        276 KLTPLNSS  283 (356)
Q Consensus       276 ~l~p~~~~  283 (356)
                      .+....+|
T Consensus       201 ~l~V~~~p  208 (222)
T 4i0k_A          201 SVTITGQP  208 (222)
T ss_dssp             EEECCC--
T ss_pred             EEEEeCCc
Confidence            88855433

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.88  E-value=6.4e-23  Score=161.24  Aligned_cols=64  Identities=20%  Similarity=0.372  Sum_probs=53.0

Q ss_pred             CCCeEEEEEEEcCCCCCeEEEEECCEEccCCC-ceeEEEeCCEEEEEEccC-CCCCCeEEEEEEEcCCCc
Q psy12422        203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-ILDLKYKNGVASLQIQEV-FPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       203 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~-~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~g~  270 (356)
                      +|++++|.|.  |.|.|.+.|+++|..+.... ...+....+  .|.|.++ +.+|+|.|+|.|.|..|.
T Consensus       127 ~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~--~L~I~~v~~~~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          127 SGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             ETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETT--EEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             cCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCC--EEEEeeCCccccCEEEEEEeccCCCC
Confidence            8999999999  78999999999999886532 112222344  8999999 999999999999999996

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.88  E-value=6e-22  Score=164.98  Aligned_cols=209  Identities=14%  Similarity=0.132  Sum_probs=135.2

Q ss_pred             cccccccCccceeeecccCCceeeecccccccCCccccCCCCceEE---EEeeccccccccccccCCCccceeeeeeccc
Q psy12422         88 AHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTT---QMSTLSSNYSSSTNNATSPSKKITRRMNSIL  164 (356)
Q Consensus        88 ~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (356)
                      ....+.+|+.+.|.|.+..  .+.|++++.......  . .+....   ....+.|.|.|.+.+                
T Consensus        20 ~~~~v~~G~~v~l~C~~~~--~i~W~~~~~~~~~~~--~-~~~~L~i~~~~~~d~G~Y~C~~~n----------------   78 (290)
T 2o26_X           20 SELIVEAGDTLSLTCIDPD--FVRWTFKTYFNEMVE--N-KKNEWIQEKAEATRTGTYTCSNSN----------------   78 (290)
T ss_dssp             SEEEEETTSCEEEEEECTT--EEEEEEECSSSCEEE--E-CSSEEEETTCCGGGCEEEEEEESS----------------
T ss_pred             CeEEEcCCCcEEEEECCCC--cEEEecCCcceeeec--C-CCceEEEeccCHHhCeEEEEEeeC----------------
Confidence            3445789999999999988  999999877651100  0 001111   122233444444322                


Q ss_pred             cCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC-CeEEEE-ECCEEccCCCceeEEEeC
Q psy12422        165 DTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE-PRVSWT-KNGQPLNSSNILDLKYKN  242 (356)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~-~~g~~~~~~~~~~~~~~~  242 (356)
                           ..  .....+.+     ..+|.....+....+.+|+.+.|.|.+.+ |. +.+.|+ +||..+....++.... .
T Consensus        79 -----g~--~~~~~l~V-----~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~-~  144 (290)
T 2o26_X           79 -----GL--TSSIYVFV-----RDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNP-K  144 (290)
T ss_dssp             -----SC--EEEEEEEE-----ECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEET-T
T ss_pred             -----Cc--cEEEEEEE-----eCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCC-C
Confidence                 11  23333443     22333334556678899999999999995 87 899995 6888876654433322 2


Q ss_pred             CEEEEEEccCCCCCCe-EEEEEEEcCCCceEE-EEEEe----cCCCCccc---------------------------eeE
Q psy12422        243 GVASLQIQEVFPEDEG-VYVCTATNSLGTAET-KCKLT----PLNSSNIL---------------------------DLK  289 (356)
Q Consensus       243 ~~~~L~i~~v~~~d~G-~Y~C~a~n~~g~~~~-~~~l~----p~~~~~~~---------------------------~~~  289 (356)
                      +  .|.|.+++.+|+| .|+|.|.|..+.... .+.+.    +..+|.+.                           .+.
T Consensus       145 ~--~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~  222 (290)
T 2o26_X          145 A--GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSM  222 (290)
T ss_dssp             T--EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEE
T ss_pred             C--CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEE
Confidence            2  7999999999999 999999998654322 22332    11111110                           244


Q ss_pred             EeC------------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecC
Q psy12422        290 YKN------------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP  333 (356)
Q Consensus       290 ~~~------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  333 (356)
                      |..                        ..+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|+.+|
T Consensus       223 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          223 WLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             EEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             EecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            432                        24679999999999999999999999999999999998876

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.88  E-value=1.5e-23  Score=166.29  Aligned_cols=166  Identities=17%  Similarity=0.244  Sum_probs=112.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEcc-------------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l~-------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++|+|.|.+.+.|.+.|.|||+  |..+.             ..++......+..+|+|.+++.+|+|.|+|.+.|..+
T Consensus        14 G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~   93 (212)
T 1nfd_E           14 GETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDN   93 (212)
T ss_dssp             TSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTT
T ss_pred             CCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccC
Confidence            78999999998888889999994  33321             2344444555677999999999999999999997322


Q ss_pred             ee---EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccc
Q psy12422         66 TD---ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNY  142 (356)
Q Consensus        66 ~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (356)
                      ..   .....|.|...+                                                               
T Consensus        94 ~~~~~~~~~~l~V~~~~---------------------------------------------------------------  110 (212)
T 1nfd_E           94 NDLVFGSGTQLTVLRGP---------------------------------------------------------------  110 (212)
T ss_dssp             TEEEECCCEEEEEECCC---------------------------------------------------------------
T ss_pred             cccccCCceEEEEccCC---------------------------------------------------------------
Confidence            11   112334332110                                                               


Q ss_pred             cccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCC-CC-Ce
Q psy12422        143 SSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PE-PR  220 (356)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-p~  220 (356)
                                                                  ..+|.+...+....+.+|+.++|.|.+.|. |+ |.
T Consensus       111 --------------------------------------------~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~  146 (212)
T 1nfd_E          111 --------------------------------------------KSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSAT  146 (212)
T ss_dssp             --------------------------------------------CBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCE
T ss_pred             --------------------------------------------CCCCEEEeeCCchHhccCCceEEEEEEEeeECCccE
Confidence                                                        123333332222334579999999999887 54 78


Q ss_pred             EEEEECCEEccCCCceeEEE--eCC---EEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        221 VSWTKNGQPLNSSNILDLKY--KNG---VASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       221 i~W~~~g~~~~~~~~~~~~~--~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      |.|+++|..+..........  .++   .+.|.|.+++.+|+|.|+|.|.|..+....
T Consensus       147 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          147 VTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK  204 (212)
T ss_dssp             EEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             EEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence            99999999886542211000  011   246999999999999999999999876443

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.88  E-value=3.4e-22  Score=152.71  Aligned_cols=139  Identities=18%  Similarity=0.286  Sum_probs=105.1

Q ss_pred             CCceEEEEEeccCC-CCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKP-PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p-~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.+.| .+.+.|||+|..+....       .  .+.|.+++.+|+|.|+|.+.|....  ..+.|.|... 
T Consensus        19 G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~-------~--~~~~~~~~~~d~G~Y~C~~~~~~~s--~~~~l~v~~~-   86 (170)
T 3ry4_A           19 EDSVTLTCQGARSPESDSIQWFHNGNLIPTHT-------Q--PSYRFKANNNDSGEYTCQTGQTSLS--DPVHLTVLFE-   86 (170)
T ss_dssp             TCEEEEEEESCCCSSSSCEEEEETTEECTTCC-------S--SEEEEECCGGGCEEEEEEETTSBCC--CCEEEEEECC-
T ss_pred             CCcEEEEEEecCCCCcceEEEEECCeEcccCc-------c--ceEEEecccccCeEEEEEEeCCCce--EeEEEEEECC-
Confidence            78999999998887 57899999999987532       1  4667889999999999999875332  3344544421 


Q ss_pred             cchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeee
Q psy12422         80 ESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRR  159 (356)
Q Consensus        80 ~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                                                                                                      
T Consensus        87 --------------------------------------------------------------------------------   86 (170)
T 3ry4_A           87 --------------------------------------------------------------------------------   86 (170)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeE
Q psy12422        160 MNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDL  238 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~  238 (356)
                                                    +.+.. .....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+...     
T Consensus        87 ------------------------------~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-----  130 (170)
T 3ry4_A           87 ------------------------------WLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS-----  130 (170)
T ss_dssp             ------------------------------SEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE-----
T ss_pred             ------------------------------ceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc-----
Confidence                                          11111 112357789999999999 55677899999999876421     


Q ss_pred             EEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        239 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                         .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus       131 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  159 (170)
T 3ry4_A          131 ---HLDPTFSIPQANHSHSGDYHCTGNIGYTL  159 (170)
T ss_dssp             ---SSCCEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ---CCCCeEEEEeccccCCEEEEEEEEeCcCc
Confidence               22347999999999999999999999986

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.88  E-value=9.6e-22  Score=165.80  Aligned_cols=225  Identities=12%  Similarity=0.119  Sum_probs=126.6

Q ss_pred             ccccccCccceeeeccc-CCceeeecccccccCCccccCCCCceE---EEEeeccccccccccccCCCccceeeeeeccc
Q psy12422         89 HNFLYSGDRKYIEKHIR-PAPAIITTRQEIKSSYSSHTDDTGRTT---TQMSTLSSNYSSSTNNATSPSKKITRRMNSIL  164 (356)
Q Consensus        89 ~~~~~~g~~~~l~c~~~-p~p~i~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (356)
                      ...+.+|+.+.|.|.+. ..+.+.|++++................   .....+.|.|.|.+.+....            
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~------------   99 (316)
T 3vh8_G           32 SAVVPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSP------------   99 (316)
T ss_dssp             CSEEETTSCEEEEEEBTTBCCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSS------------
T ss_pred             CCccCCCCCEEEEEEccCCCceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCCC------------
Confidence            35678999999999998 456799999877653321111111111   11333445555543221110            


Q ss_pred             cCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEE-eCC
Q psy12422        165 DTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY-KNG  243 (356)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~-~~~  243 (356)
                         ......+....+.+..  ...+|.+...+... +.+|+.++|.|.+. .+++.+.|+++|..+.......... ...
T Consensus       100 ---~~~~~~s~~~~l~V~~--~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~  172 (316)
T 3vh8_G          100 ---TGWSAPSNPVVIMVTG--NHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVS  172 (316)
T ss_dssp             ---SSBCCCCCCEEEEEEC--SSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEE
T ss_pred             ---cceecCCCcEEEEEec--CCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCc
Confidence               0111122333343321  13456666655544 88999999999995 4667899999998775332111111 123


Q ss_pred             EEEEEEccCCCCCCeEEEEEEEcCCCc-------eEEEEEEec-CCCCcc--------c----------------eeEEe
Q psy12422        244 VASLQIQEVFPEDEGVYVCTATNSLGT-------AETKCKLTP-LNSSNI--------L----------------DLKYK  291 (356)
Q Consensus       244 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~-------~~~~~~l~p-~~~~~~--------~----------------~~~~~  291 (356)
                      ...|.|.+++.+|+|.|+|.|.|..|.       ....+.+.. ...+.+        .                .+.|.
T Consensus       173 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~~~~W~  252 (316)
T 3vh8_G          173 KANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHLS  252 (316)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEESSCCSEEEEE
T ss_pred             eEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECCCCCcEEEEE
Confidence            468999999999999999999999873       223333321 011110        0                33443


Q ss_pred             C------------------CeEEEEEecCCCCCCeEEEEEEEcCCcc-----eEEEEEEEEEecCC
Q psy12422        292 N------------------GVASLQIQEVFPEDEGVYVCTATNSLGT-----AETKCKLTVRSTPA  334 (356)
Q Consensus       292 ~------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~~~p~  334 (356)
                      +                  ....|.|.+++  |+|.|+|+|+|..+.     .+..+.|.|.++|.
T Consensus       253 k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p~  316 (316)
T 3vh8_G          253 REGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNPS  316 (316)
T ss_dssp             ETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC-------
T ss_pred             ECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCCC
Confidence            2                  12689999999  999999999998763     45578888888763

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.88  E-value=1.3e-21  Score=155.17  Aligned_cols=148  Identities=31%  Similarity=0.564  Sum_probs=115.4

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEe-CCEEEEEEccC-CCCCCeEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK-NGVASLQIQEV-FPEDEGVYVCTA  264 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~v-~~~d~G~Y~C~a  264 (356)
                      ..+|.|...+.+..+.+|+.+.|.|.+.|+|.+.+.|+++|..+........... .....|.|.++ +.+|+|.|+|.|
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            4568888888889999999999999999999999999999999876544333332 34678999999 599999999999


Q ss_pred             EcCCCceEEEEEEecCCC-------Cccc--------------------------eeEEeC-------------------
Q psy12422        265 TNSLGTAETKCKLTPLNS-------SNIL--------------------------DLKYKN-------------------  292 (356)
Q Consensus       265 ~n~~g~~~~~~~l~p~~~-------~~~~--------------------------~~~~~~-------------------  292 (356)
                      .|..|.....+.|.+...       +.+.                          .+.|..                   
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~  163 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS  163 (212)
T ss_dssp             EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEE
T ss_pred             EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEec
Confidence            999998777666653211       1111                          344432                   


Q ss_pred             -CeEEEEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEecCC
Q psy12422        293 -GVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTVRSTPA  334 (356)
Q Consensus       293 -~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~  334 (356)
                       ....|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|..++.
T Consensus       164 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~  207 (212)
T 2yd6_A          164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH  207 (212)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             CCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEeccc
Confidence             2378999999999999999999999998865 78999988875

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.88  E-value=3.9e-22  Score=158.65  Aligned_cols=169  Identities=15%  Similarity=0.188  Sum_probs=111.7

Q ss_pred             CCceEEEEEe-ccCC-CCeeEEeeCC--EEcc-------------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVG-STKP-PPTVKWYKGN--RELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~-~g~p-~~~v~W~k~g--~~l~-------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.+ .+.| .+.|.|||++  ..+.             ..++......+..+|+|.+++.+|+|.|.|.+.|.
T Consensus        15 G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   94 (216)
T 2xzc_L           15 GQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDS   94 (216)
T ss_dssp             TCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             CCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            7899999995 4443 5789999953  2221             12444444566779999999999999999999998


Q ss_pred             Cc--eeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecccc
Q psy12422         64 HG--TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSN  141 (356)
Q Consensus        64 ~g--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (356)
                      .+  .......|.|...                                                               
T Consensus        95 ~~~~~~~~~~~l~V~~~---------------------------------------------------------------  111 (216)
T 2xzc_L           95 SLNPVFGGGTKLEIKRT---------------------------------------------------------------  111 (216)
T ss_dssp             TSCEEEBCCEEEEECCC---------------------------------------------------------------
T ss_pred             CCcceECCCEEEEEcCC---------------------------------------------------------------
Confidence            75  1122334444211                                                               


Q ss_pred             ccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC-CCCC-
Q psy12422        142 YSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEP-  219 (356)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p-  219 (356)
                                                                   ..+|.+...+......+|+.++|.|.+.| .|+| 
T Consensus       112 ---------------------------------------------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~  146 (216)
T 2xzc_L          112 ---------------------------------------------VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREA  146 (216)
T ss_dssp             ---------------------------------------------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCC
T ss_pred             ---------------------------------------------CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCce
Confidence                                                         12233332221112335889999999987 5554 


Q ss_pred             eEEEEECCEEccCCCceeE--EE-eCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        220 RVSWTKNGQPLNSSNILDL--KY-KNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       220 ~i~W~~~g~~~~~~~~~~~--~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      .|.|+++|..+........  .. .++    .+.|.|..+..+|+|.|+|.|.|..........+
T Consensus       147 ~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i  211 (216)
T 2xzc_L          147 KVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  211 (216)
T ss_dssp             EEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             EEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEec
Confidence            8999999998865411110  11 111    2479999999999999999999998665544444

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.88  E-value=2.3e-21  Score=151.87  Aligned_cols=144  Identities=25%  Similarity=0.419  Sum_probs=114.9

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC-ceeEE-EeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-ILDLK-YKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~-~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+.... ++... ..++...|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            57888888888999999999999999999999999999999887543 33333 34566799999999999999999999


Q ss_pred             cCCCceEEEEEEecCC-----CCc-------cc-------------------eeEEeC-----------------CeEEE
Q psy12422        266 NSLGTAETKCKLTPLN-----SSN-------IL-------------------DLKYKN-----------------GVASL  297 (356)
Q Consensus       266 n~~g~~~~~~~l~p~~-----~~~-------~~-------------------~~~~~~-----------------~~~~L  297 (356)
                      |..|.....+.|....     .+.       +.                   .+.|..                 ....|
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L  162 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL  162 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEE
T ss_pred             ECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEE
Confidence            9998877666665211     000       00                   333432                 34689


Q ss_pred             EEec-CCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        298 QIQE-VFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       298 ~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                      .|.+ ++.+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus       163 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             ECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence            9999 999999999999999999999999998863

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.88  E-value=3.5e-22  Score=158.58  Aligned_cols=167  Identities=17%  Similarity=0.152  Sum_probs=114.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--EEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++|+|.|.+.+.|.+.+.|||++  ...             ...++......+..+|+|.+++.+|+|.|.|.|.|..+
T Consensus        16 G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   95 (213)
T 3r06_A           16 GDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYP   95 (213)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSS
T ss_pred             CCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEecccCCc
Confidence            789999999999999999999932  111             02244444455677999999999999999999988754


Q ss_pred             ee-EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccc
Q psy12422         66 TD-ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSS  144 (356)
Q Consensus        66 ~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (356)
                      .. .....|.|...                                                                  
T Consensus        96 ~~~~~~~~l~V~~~------------------------------------------------------------------  109 (213)
T 3r06_A           96 WTFGPGTKLEIKRA------------------------------------------------------------------  109 (213)
T ss_dssp             CEECCCEEEEECCC------------------------------------------------------------------
T ss_pred             eEEcCCceEEEecc------------------------------------------------------------------
Confidence            22 22344444211                                                                  


Q ss_pred             cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC--CeEE
Q psy12422        145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE--PRVS  222 (356)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~i~  222 (356)
                                                                ..+|.+...+....+..|+.+.|.|.+.|.|+  +.+.
T Consensus       110 ------------------------------------------~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~  147 (213)
T 3r06_A          110 ------------------------------------------DAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVK  147 (213)
T ss_dssp             ------------------------------------------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEE
T ss_pred             ------------------------------------------CCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEE
Confidence                                                      23344444333444567888999999987654  3799


Q ss_pred             EEECCEEccCCC-ce-eEEE-eCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        223 WTKNGQPLNSSN-IL-DLKY-KNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       223 W~~~g~~~~~~~-~~-~~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      |+++|..+.... .. .... ..+    .+.|.|.....+|+|.|+|.|.|.........
T Consensus       148 W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~~  207 (213)
T 3r06_A          148 WKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIVK  207 (213)
T ss_dssp             EEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEE
T ss_pred             EEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceEE
Confidence            999999887532 11 0111 111    24688999999999999999999876544433

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.88  E-value=1e-21  Score=150.77  Aligned_cols=149  Identities=15%  Similarity=0.255  Sum_probs=107.0

Q ss_pred             CCceEEEEEec--cCCCCeeEEee--CCEEcc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          1 MQNVIKVKVGS--TKPPPTVKWYK--GNRELS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~~~--g~p~~~v~W~k--~g~~l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      |++|+|.|...  +.|.+.|.|+|  ++..|.          ...+.....++  +|+|.+++.+|+|.|+|.+.|..|.
T Consensus        14 G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng--sL~I~~v~~~DsG~Y~c~~~n~~g~   91 (182)
T 1hnf_A           14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG--TLKIKHLKTDDQDIYKVSIYDTKGK   91 (182)
T ss_dssp             TSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS--CEEECSCCGGGCEEEEEEEEETTSC
T ss_pred             CCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC--CEEECCCChhhCEEEEEEEEeCCCc
Confidence            78999999542  35677999999  988762          22233344556  7999999999999999999998876


Q ss_pred             eE--EEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccc
Q psy12422         67 DE--TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSS  144 (356)
Q Consensus        67 ~~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (356)
                      ..  ..+.|.|..+                                                                  
T Consensus        92 ~~~~~~~~L~V~~~------------------------------------------------------------------  105 (182)
T 1hnf_A           92 NVLEKIFDLKIQER------------------------------------------------------------------  105 (182)
T ss_dssp             EEEEEEEEEEEECC------------------------------------------------------------------
T ss_pred             eeEEEEEEEEEcCc------------------------------------------------------------------
Confidence            54  3455666532                                                                  


Q ss_pred             cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEE
Q psy12422        145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWT  224 (356)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~  224 (356)
                                                                ..+|.+..        .+..+.|.|.+.+.|.|.+.|+
T Consensus       106 ------------------------------------------~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~  135 (182)
T 1hnf_A          106 ------------------------------------------VSKPKISW--------TCINTTLTCEVMNGTDPELNLY  135 (182)
T ss_dssp             ------------------------------------------CCCCEEEE--------ETTTTEEEEECSSCSSCEEEEE
T ss_pred             ------------------------------------------CCCCEEEE--------ccCcEEEEeEccCCCCCEEEEE
Confidence                                                      11233221        1236899999999999999999


Q ss_pred             ECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        225 KNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       225 ~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ++|..+ ..       ...  .|.+. ...+|+|.|+|.|.|.+|.......+.
T Consensus       136 ~~g~~l-~~-------~~~--~i~~~-~~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          136 QDGKHL-KL-------SQR--VITHK-WTTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             ESSCEE-EE-------ESS--CEEEE-CCSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             ECCEEC-CC-------CCc--EEEEe-cccCCCcEEEEEEEeCCCCcEEcceec
Confidence            999877 11       111  23333 257899999999999999888776653

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.88  E-value=4.8e-22  Score=158.45  Aligned_cols=170  Identities=18%  Similarity=0.249  Sum_probs=110.4

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEcc------------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NRELS------------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l~------------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++++|.|.+.|.|  .+.|.|||+  |..+.                  ..++....  ..+..+|+|.+++.+|+|.|
T Consensus        15 G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   94 (219)
T 1c1e_H           15 GETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNEDMATY   94 (219)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcccCEEE
Confidence            78999999998875  678999996  43221                  12222222  23457999999999999999


Q ss_pred             EEEEEeCCcee----EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceE
Q psy12422         57 KCVATNKHGTD----ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTT  132 (356)
Q Consensus        57 ~C~a~n~~g~~----~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~  132 (356)
                      .|.+.|..+..    ...+.|.|....                                                     
T Consensus        95 ~C~~~~~~~~~~~~~~~~~~l~V~~~~-----------------------------------------------------  121 (219)
T 1c1e_H           95 FCARGTTIVRAMDYWGQGTSLTVSSAK-----------------------------------------------------  121 (219)
T ss_dssp             EEEEEETTTTEEEEECCCEEEEECCCC-----------------------------------------------------
T ss_pred             EEEEeccCcccceeecCceEEEEecCC-----------------------------------------------------
Confidence            99999976321    123444443210                                                     


Q ss_pred             EEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEE
Q psy12422        133 TQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAV  212 (356)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~  212 (356)
                                                                            ..+|.+...+....+.+|+.++|.|.
T Consensus       122 ------------------------------------------------------~~~P~i~~~~~~~~~~~g~~v~L~C~  147 (219)
T 1c1e_H          122 ------------------------------------------------------TTPPSVYPLAPGSAAQTNSMVTLGCL  147 (219)
T ss_dssp             ------------------------------------------------------CBCCEEEEECCCSSSCCSSEEEEEEE
T ss_pred             ------------------------------------------------------CCCCeEEEecCccccccCCeEEEEEE
Confidence                                                                  11233322222224568999999999


Q ss_pred             EcC-CCCC-eEEEEECCEEccCCCceeEEEeCC---EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        213 VKG-DPEP-RVSWTKNGQPLNSSNILDLKYKNG---VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       213 ~~g-~p~p-~i~W~~~g~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +.| +|.| .|.|+++|..+...........+.   .+.|.|.... .|.|.|+|.|.|..+.......+.
T Consensus       148 ~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~~i~  217 (219)
T 1c1e_H          148 VKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDKKIV  217 (219)
T ss_dssp             EEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEEECC
T ss_pred             cccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEEecC
Confidence            988 8998 999999987643111000011111   2468884444 466999999999999877766654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.88  E-value=3e-22  Score=171.30  Aligned_cols=133  Identities=17%  Similarity=0.239  Sum_probs=83.6

Q ss_pred             CCceeecCCCeEEEEEEE-----cCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC-C
Q psy12422        196 LTDKTIDDGQCLDLSAVV-----KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL-G  269 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~-----~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~-g  269 (356)
                      +....+.+|+.+.|.|.+     .|.|.|.+.|+++|..+.....  +...+.  .|.|.+++.+|+|.|+|.|.|.. |
T Consensus       127 ~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~--~~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~~g  202 (349)
T 4dep_C          127 PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNN--VIPEGM--NLSFLIALISNNGNYTCVVTYPENG  202 (349)
T ss_dssp             CEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSS--EEEETT--EEEEESCCGGGCEEEEEEEEEEETT
T ss_pred             CcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccc--eeecCC--EEEEeeeeecCCcEEEEEEEEeeCC
Confidence            345678899999999985     7789999999999998865432  333343  79999999999999999999987 4


Q ss_pred             ce---EEEEEEecCC------CCcc--------------------------------ceeEEeCC---------------
Q psy12422        270 TA---ETKCKLTPLN------SSNI--------------------------------LDLKYKNG---------------  293 (356)
Q Consensus       270 ~~---~~~~~l~p~~------~~~~--------------------------------~~~~~~~~---------------  293 (356)
                      ..   ...+.+....      ++.+                                ..+.|..+               
T Consensus       203 ~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~  282 (349)
T 4dep_C          203 RTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINE  282 (349)
T ss_dssp             EEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCE
T ss_pred             EEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCcccccc
Confidence            43   3444443211      1111                                03445321               


Q ss_pred             ------------eEEEEEecCCCCCC-eEEEEEEEcCCcceEEEEEEEEEec
Q psy12422        294 ------------VASLQIQEVFPEDE-GVYVCTATNSLGTAETKCKLTVRST  332 (356)
Q Consensus       294 ------------~~~L~i~~v~~~d~-G~Y~C~a~n~~g~~~~~~~l~V~~~  332 (356)
                                  .+.|.|.+++.+|+ |.|+|.|.|..|..+..+.|.|+.+
T Consensus       283 ~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~~  334 (349)
T 4dep_C          283 SISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVP  334 (349)
T ss_dssp             EEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC------
T ss_pred             ceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeecC
Confidence                        23399999999999 9999999999999999999999763

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.88  E-value=3.4e-22  Score=166.59  Aligned_cols=215  Identities=14%  Similarity=0.140  Sum_probs=131.7

Q ss_pred             ccccccCccceeeecccCCceeeecccccccCCccccCCCCceEE----EEeeccccccccccccCCCccceeeeeeccc
Q psy12422         89 HNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTT----QMSTLSSNYSSSTNNATSPSKKITRRMNSIL  164 (356)
Q Consensus        89 ~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (356)
                      ...+.+|+.+.|.|.+...  +.|++.........  ........    ....+.|.|.|...+...             
T Consensus        13 ~~~v~~G~~v~L~C~~~~~--v~W~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~-------------   75 (292)
T 4dkd_C           13 ELVVKPGATVTLRCVGNGS--VEWDGPPSPHWTLY--SDGSSSILSTNNATFQNTGTYRCTEPGDPL-------------   75 (292)
T ss_dssp             SCEECTTCCEEEEEECSSC--CCBCCCCCSSCEEC--CBTTEEEEEESSCCGGGCSCEEECCCC----------------
T ss_pred             eEEEcCCCcEEEEEcCCCc--eEEccCCCCceEEe--ccCceEEEEEcccccccCEEEEEEEccCCC-------------
Confidence            4467899999999999874  99996543221110  00000111    123344555555432211             


Q ss_pred             cCCCCCcccccceeeecCCCCCCCCCe-ecccCCceeecCCCeEEEEEEEcCCCC--CeEEEEEC-CEEccCCCceeEEE
Q psy12422        165 DTDSPSRSRSTTKELIMPPDTAMTPPQ-FANKLTDKTIDDGQCLDLSAVVKGDPE--PRVSWTKN-GQPLNSSNILDLKY  240 (356)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~-g~~~~~~~~~~~~~  240 (356)
                             .......+.+     ..+|. +...+....+.+|+.+.|.|.+.+ |.  +.+.|+++ +..+..........
T Consensus        76 -------~~~~~~~l~V-----~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~  142 (292)
T 4dkd_C           76 -------GGSAAIHLYV-----KDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSP  142 (292)
T ss_dssp             --------CCEEECCEE-----CCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCS
T ss_pred             -------CcceEEEEEE-----cCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccC
Confidence                   1122333444     22232 344556788999999999999987 54  78999996 55555444333222


Q ss_pred             eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE-EEEEecCC----CCccc---------------------------ee
Q psy12422        241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTPLN----SSNIL---------------------------DL  288 (356)
Q Consensus       241 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~p~~----~~~~~---------------------------~~  288 (356)
                      .   ..|.|.+++.+|+|.|+|.|.|..+.... .+.+....    ++.+.                           .+
T Consensus       143 ~---~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~  219 (292)
T 4dkd_C          143 W---HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDV  219 (292)
T ss_dssp             S---SCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEE
T ss_pred             C---ceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEE
Confidence            2   24999999999999999999998775432 33333111    12111                           23


Q ss_pred             EEeC-------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCC
Q psy12422        289 KYKN-------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAAN  336 (356)
Q Consensus       289 ~~~~-------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  336 (356)
                      .|..                   ..+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|++.....
T Consensus       220 ~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~  286 (292)
T 4dkd_C          220 FLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS  286 (292)
T ss_dssp             ECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-------
T ss_pred             EEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence            3322                   12489999999999999999999999999999999999886643

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.88  E-value=1.6e-21  Score=157.78  Aligned_cols=162  Identities=17%  Similarity=0.190  Sum_probs=111.3

Q ss_pred             CCceEEEEEeccCC----CCeeEEeeC--CEEc---c----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKP----PPTVKWYKG--NREL---S----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p----~~~v~W~k~--g~~l---~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|.+.+.|    .+.|.|||+  |..+   .          ..++.....++..+|+|.+++.+|+|.|+|.+.
T Consensus        16 G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   95 (240)
T 1moe_A           16 GQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQT   95 (240)
T ss_dssp             TSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEEEEEEEc
Confidence            78999999999988    789999995  2211   0          124444445566789999999999999999999


Q ss_pred             eCCce-eEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccc
Q psy12422         62 NKHGT-DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSS  140 (356)
Q Consensus        62 n~~g~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (356)
                      |..+. ....+.|.|...+..                                                           
T Consensus        96 n~~~~~~~~~~~l~V~~~~~~-----------------------------------------------------------  116 (240)
T 1moe_A           96 NEDPYTFGGGTKLEIKGGGSG-----------------------------------------------------------  116 (240)
T ss_dssp             SSSSCCBCCCEEEEECCCSCC-----------------------------------------------------------
T ss_pred             cCCceeecCCEEEEEecCCCC-----------------------------------------------------------
Confidence            87554 223345555432100                                                           


Q ss_pred             cccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC--
Q psy12422        141 NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE--  218 (356)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--  218 (356)
                                                                    ..++.+...+....+.+|++++|.|.+.+.|.  
T Consensus       117 ----------------------------------------------~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~  150 (240)
T 1moe_A          117 ----------------------------------------------GGGEVQLQQSGAELVEPGASVKLSCTASGFNIKD  150 (240)
T ss_dssp             ----------------------------------------------CCCCCEEEECCCEEECTTCCEEEEEEEESSCGGG
T ss_pred             ----------------------------------------------CCceEEEeCCCceEEeCCCcEEEEEEEcCccCCC
Confidence                                                          01122222344567889999999999999884  


Q ss_pred             CeEEEEEC--CEEcc-----------------CCCceeEEEe--CCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        219 PRVSWTKN--GQPLN-----------------SSNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       219 p~i~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      +.+.|+|+  |..+.                 ...++....+  ....+|.|.+++.+|+|.|.|.|.+.
T Consensus       151 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          151 TYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             SCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             CEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            58999995  32211                 1123333332  44578999999999999999999853

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.87  E-value=3.5e-21  Score=159.45  Aligned_cols=171  Identities=14%  Similarity=0.181  Sum_probs=114.5

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeCC--EEcc------------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKGN--RELS------------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~g--~~l~------------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.+.|  .+.+.|||++  ..+.                  ..++....  ..+..+|+|.+++.+|+|.|
T Consensus        41 G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y  120 (282)
T 1qok_A           41 GTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVY  120 (282)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChhhCEEE
Confidence            78999999998875  5789999953  2110                  12333332  33567999999999999999


Q ss_pred             EEEEEeCCce-----eEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCce
Q psy12422         57 KCVATNKHGT-----DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRT  131 (356)
Q Consensus        57 ~C~a~n~~g~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~  131 (356)
                      .|.+.|..|.     ....+.|.|...+.......                                             
T Consensus       121 ~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~---------------------------------------------  155 (282)
T 1qok_A          121 YCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGG---------------------------------------------  155 (282)
T ss_dssp             EEEEECSSSSCCCEEECCCEEEEEEC------------------------------------------------------
T ss_pred             EEEeccCCCccceeeeCCCEEEEEecCCcccCCcc---------------------------------------------
Confidence            9999998651     11234555553311000000                                             


Q ss_pred             EEEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEE
Q psy12422        132 TTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSA  211 (356)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C  211 (356)
                                                                 .        .....++.+...+....+.+|++++|.|
T Consensus       156 -------------------------------------------~--------~~~~~~~~~~~~p~~~~v~~G~~v~L~C  184 (282)
T 1qok_A          156 -------------------------------------------S--------GGGGSENVLTQSPAIMSASPGEKVTITC  184 (282)
T ss_dssp             ---------------------------------------------------------CCCEEEECSEEEECTTCCEEEEE
T ss_pred             -------------------------------------------C--------CCCccceEEecCCCEEEEcCCCcEEEEE
Confidence                                                       0        0001234444455667899999999999


Q ss_pred             EEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        212 VVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       212 ~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      .+.+.| +.+.|+|  +|..+.            ...++.........+|+|.+++.+|+|.|.|.|.|..
T Consensus       185 ~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  254 (282)
T 1qok_A          185 SASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSY  254 (282)
T ss_dssp             EESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence            999999 8999999  555431            1234444445567789999999999999999999854

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.87  E-value=3.2e-22  Score=163.31  Aligned_cols=168  Identities=15%  Similarity=0.140  Sum_probs=112.6

Q ss_pred             CCceEEEEEeccCC-----CCeeEEeeC--CEEc-----------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKP-----PPTVKWYKG--NREL-----------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p-----~~~v~W~k~--g~~l-----------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++++|.|.+.+.|     .+.|.|||+  |..+           .  ..++......+..+|+|.+++.+|+|.|+|.|
T Consensus        53 G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  132 (254)
T 2c1o_A           53 GQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQ  132 (254)
T ss_dssp             TSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEE
Confidence            78999999999888     489999984  3322           1  13444445566779999999999999999999


Q ss_pred             EeCCceeE-EEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecc
Q psy12422         61 TNKHGTDE-TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLS  139 (356)
Q Consensus        61 ~n~~g~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (356)
                      .|..+... ....|.|...                                                             
T Consensus       133 ~n~~~~~~~~~~~l~V~~~-------------------------------------------------------------  151 (254)
T 2c1o_A          133 GSHFPPTFGAGTKLELKRA-------------------------------------------------------------  151 (254)
T ss_dssp             CSSSSCEEBCCEEEEECCC-------------------------------------------------------------
T ss_pred             EcCcceEecCCEEEEECCC-------------------------------------------------------------
Confidence            98754322 1234444311                                                             


Q ss_pred             ccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCC-CC
Q psy12422        140 SNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PE  218 (356)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~  218 (356)
                                                                     ..+|.+...+......+|+.++|.|.+.|. |+
T Consensus       152 -----------------------------------------------~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~  184 (254)
T 2c1o_A          152 -----------------------------------------------DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK  184 (254)
T ss_dssp             -----------------------------------------------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS
T ss_pred             -----------------------------------------------CCCCeeEeecCChhhccCCcEEEEEEEecccCC
Confidence                                                           122333332222223457899999999884 44


Q ss_pred             -CeEEEEECCEEccCCC-c-eeEEEe-C----CEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        219 -PRVSWTKNGQPLNSSN-I-LDLKYK-N----GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       219 -p~i~W~~~g~~~~~~~-~-~~~~~~-~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                       +.+.|+++|..+.... . ...... +    ..+.|.|.++..+|+|.|+|.|.|..........
T Consensus       185 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  250 (254)
T 2c1o_A          185 DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKS  250 (254)
T ss_dssp             CCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEEEE
T ss_pred             CcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCCcceEe
Confidence             4599999998876541 1 110001 1    1358999999999999999999999876444333

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.87  E-value=1.4e-21  Score=157.77  Aligned_cols=170  Identities=16%  Similarity=0.226  Sum_probs=116.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--EE-----------cc--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--RE-----------LS--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~~-----------l~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++|+|.|.+.+.|.+.+.|||++  ..           ..  ..++.....++..+|+|.+++.+|+|.|+|.+.|..+
T Consensus        39 G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  118 (237)
T 3sob_L           39 GDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTP  118 (237)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCc
Confidence            789999999999999999999932  11           11  1344455556777999999999999999999988764


Q ss_pred             ee-EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccc
Q psy12422         66 TD-ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSS  144 (356)
Q Consensus        66 ~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (356)
                      .. .....|.|...                                                                  
T Consensus       119 ~~~~~~~~l~V~~~------------------------------------------------------------------  132 (237)
T 3sob_L          119 PTFGQGTKVEIKRT------------------------------------------------------------------  132 (237)
T ss_dssp             CEECCCEEEEEECC------------------------------------------------------------------
T ss_pred             eEEcCcEEEEEecC------------------------------------------------------------------
Confidence            32 22234444321                                                                  


Q ss_pred             cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC-CC-CCeEE
Q psy12422        145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-DP-EPRVS  222 (356)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p-~p~i~  222 (356)
                                                                ..+|.+...+....+.+|+.++|.|.+.+ .| .+.+.
T Consensus       133 ------------------------------------------~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~  170 (237)
T 3sob_L          133 ------------------------------------------VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQ  170 (237)
T ss_dssp             ------------------------------------------CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEE
T ss_pred             ------------------------------------------CCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEE
Confidence                                                      22344433333333456889999999987 45 58899


Q ss_pred             EEECCEEccCCC-ce-eEEE-eCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        223 WTKNGQPLNSSN-IL-DLKY-KNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       223 W~~~g~~~~~~~-~~-~~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+++|..+.... .. .... .++    .+.|.|.....+|+|.|+|+|.|.......+..+.
T Consensus       171 W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~  233 (237)
T 3sob_L          171 WKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN  233 (237)
T ss_dssp             EEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEEE
T ss_pred             EEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeeee
Confidence            999999887532 10 0000 111    35799999999999999999999987655544443

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.87  E-value=2.8e-22  Score=161.51  Aligned_cols=168  Identities=18%  Similarity=0.203  Sum_probs=110.8

Q ss_pred             CCceEEEEEeccCCC-C-eeEEeeC--CEEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPP-P-TVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-~-~v~W~k~--g~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.+.+.|. + .|.|||+  |..+             ...++.....++..+|+|.+++.+|+|.|.|.+.|.
T Consensus        34 G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~  113 (234)
T 2j6e_L           34 GQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCATWDD  113 (234)
T ss_dssp             TCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEEEEEEET
T ss_pred             CCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcC
Confidence            789999999987543 4 6999996  3222             012344444556679999999999999999999998


Q ss_pred             Ccee---EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccc
Q psy12422         64 HGTD---ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSS  140 (356)
Q Consensus        64 ~g~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (356)
                      .+..   ...+.|.|...                                                              
T Consensus       114 ~~~~~~~~~~~~l~V~~~--------------------------------------------------------------  131 (234)
T 2j6e_L          114 SLSAVIFGGGTKLTVLGQ--------------------------------------------------------------  131 (234)
T ss_dssp             TTTEEEECCCBCCCBCCC--------------------------------------------------------------
T ss_pred             CcceeEecCCEEEEEecC--------------------------------------------------------------
Confidence            7621   11111111100                                                              


Q ss_pred             cccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC--
Q psy12422        141 NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE--  218 (356)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--  218 (356)
                                                                   ...+|.+...+....+.+|+.++|.|.+.|.++  
T Consensus       132 ---------------------------------------------~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~  166 (234)
T 2j6e_L          132 ---------------------------------------------PKAAPSVTLFPPSSEELQANKATLVCLISDFFPGA  166 (234)
T ss_dssp             ---------------------------------------------CCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCC
T ss_pred             ---------------------------------------------CCCCCcccccCCChhHhcCCceEEEEEEEEEcCCc
Confidence                                                         012344433222223446889999999988644  


Q ss_pred             CeEEEEECCEEccCCCceeE-EE-eC----CEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        219 PRVSWTKNGQPLNSSNILDL-KY-KN----GVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       219 p~i~W~~~g~~~~~~~~~~~-~~-~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      +.|.|++||..+........ .. .+    ..+.|.|.++..+|+|.|+|.|.|..+....++
T Consensus       167 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          167 VTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             CEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             eEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            38999999998865421100 00 11    125799999999999999999999988765544

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.87  E-value=1.9e-21  Score=157.09  Aligned_cols=74  Identities=18%  Similarity=0.290  Sum_probs=55.6

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEECCE--E---c---------cCCCceeEEE--eCCEEEEEEccCCCCCCe
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ--P---L---------NSSNILDLKY--KNGVASLQIQEVFPEDEG  258 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~--~---~---------~~~~~~~~~~--~~~~~~L~i~~v~~~d~G  258 (356)
                      .+....+.+|++++|.|.+.+.|.|.+.|+|++.  .   +         ....++....  .....+|.|.+++.+|+|
T Consensus       133 ~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G  212 (238)
T 2p1y_A          133 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA  212 (238)
T ss_dssp             ECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCE
T ss_pred             cCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCE
Confidence            3455678999999999999999999999999531  1   1         0122333321  234578999999999999


Q ss_pred             EEEEEEEcCC
Q psy12422        259 VYVCTATNSL  268 (356)
Q Consensus       259 ~Y~C~a~n~~  268 (356)
                      .|.|.|.|..
T Consensus       213 ~Y~C~a~n~~  222 (238)
T 2p1y_A          213 TYFCAAIDTN  222 (238)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEeeCC
Confidence            9999999984

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.87  E-value=1.7e-21  Score=154.66  Aligned_cols=71  Identities=18%  Similarity=0.290  Sum_probs=52.2

Q ss_pred             ecCCCeEEEEEEEcCC----CCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc--eEEE
Q psy12422        201 IDDGQCLDLSAVVKGD----PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT--AETK  274 (356)
Q Consensus       201 v~~g~~~~l~C~~~g~----p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~--~~~~  274 (356)
                      +.+|+.++|.|.+.+.    |.|.+.|++++..+....      ....+.|.|..+..+|+|.|+|.|.|..+.  ....
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~~------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~  208 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERT  208 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCSS------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEE
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCCC------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEE
Confidence            5689999999999764    889999999886543211      122348999999999999999999998754  4444


Q ss_pred             EEE
Q psy12422        275 CKL  277 (356)
Q Consensus       275 ~~l  277 (356)
                      +.|
T Consensus       209 v~l  211 (214)
T 2zg1_A          209 VQL  211 (214)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            444

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.87  E-value=2.4e-21  Score=157.66  Aligned_cols=174  Identities=17%  Similarity=0.184  Sum_probs=110.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC-----EEc----------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN-----REL----------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g-----~~l----------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++|+|.|.+.+.|.+.+.|||+.     ..+          ...++.....++..+|+|.+++.+|+|.|.|.+.|..+
T Consensus        19 G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~   98 (250)
T 3esu_F           19 GDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLP   98 (250)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCC
Confidence            789999999999999999999942     111          02344444556677999999999999999999998755


Q ss_pred             ee-EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccc
Q psy12422         66 TD-ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSS  144 (356)
Q Consensus        66 ~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (356)
                      .. .....|.|...+.......    ...                                                   
T Consensus        99 ~~~~~~~~l~V~~~~~~~~~~~----~~~---------------------------------------------------  123 (250)
T 3esu_F           99 WTFGGGTKLEIRRGGGGSGGGG----SGG---------------------------------------------------  123 (250)
T ss_dssp             CEECCCEEEEEC--------------------------------------------------------------------
T ss_pred             ceECCCEEEEEECCCCcccccc----ccc---------------------------------------------------
Confidence            43 2334565553211000000    000                                                   


Q ss_pred             cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCC--CCeEE
Q psy12422        145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP--EPRVS  222 (356)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p--~p~i~  222 (356)
                                                .   ..        ....++.+...+....+.+|++++|.|.+.+.|  .+.+.
T Consensus       124 --------------------------~---~~--------~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  166 (250)
T 3esu_F          124 --------------------------G---GS--------GGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMN  166 (250)
T ss_dssp             ------------------------------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEE
T ss_pred             --------------------------c---cc--------cCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEE
Confidence                                      0   00        001112222333456789999999999999877  78899


Q ss_pred             EEEC--CEEccC-----------------CCceeEEEe--CCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        223 WTKN--GQPLNS-----------------SNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       223 W~~~--g~~~~~-----------------~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      |+++  +..+..                 ..++....+  ....+|.|.+++.+|+|.|.|.|.|
T Consensus       167 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          167 WVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            9996  432211                 123333322  4456899999999999999999997

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.87  E-value=4.4e-21  Score=158.37  Aligned_cols=171  Identities=18%  Similarity=0.208  Sum_probs=111.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCE-----Ecc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNR-----ELS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~-----~l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++|+|.|.+.+.|.+.|.|||++.     .+.          ..++.....++..+|+|.+++.+|+|.|.|.+.|..+
T Consensus        27 G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~  106 (276)
T 3auv_A           27 GDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTP  106 (276)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCc
Confidence            7899999999999999999999541     121          1244444455677999999999999999999998754


Q ss_pred             e-eEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccc
Q psy12422         66 T-DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSS  144 (356)
Q Consensus        66 ~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (356)
                      . ....+.|.|...+.....                                                            
T Consensus       107 ~~~~~~~~l~V~~~~~~~~~------------------------------------------------------------  126 (276)
T 3auv_A          107 PTFGCGTKVEIKGGGGGSIE------------------------------------------------------------  126 (276)
T ss_dssp             CCCCCCEEEEC---------------------------------------------------------------------
T ss_pred             ccccCCEEEEEecCCCcccc------------------------------------------------------------
Confidence            3 222344555432100000                                                            


Q ss_pred             cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCC--CCeEE
Q psy12422        145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP--EPRVS  222 (356)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p--~p~i~  222 (356)
                                                     .  +.    ....++.+...+....+.+|++++|.|.+.+.|  .+.+.
T Consensus       127 -------------------------------~--~~----~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~  169 (276)
T 3auv_A          127 -------------------------------G--RS----GGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIH  169 (276)
T ss_dssp             ---------------------------------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEE
T ss_pred             -------------------------------c--cc----cccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEE
Confidence                                           0  00    001112222233566889999999999999887  48899


Q ss_pred             EEECC--EEc-----------------cCCCceeEEEe--CCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        223 WTKNG--QPL-----------------NSSNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       223 W~~~g--~~~-----------------~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      |+|++  ..+                 ....++....+  ....+|.|.+++.+|+|.|.|.|.|..
T Consensus       170 W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~  236 (276)
T 3auv_A          170 WVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF  236 (276)
T ss_dssp             EEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             EEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence            99953  111                 01233443332  345689999999999999999999984

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.87  E-value=2.2e-21  Score=155.01  Aligned_cols=77  Identities=16%  Similarity=0.319  Sum_probs=57.2

Q ss_pred             eecCCCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        200 TIDDGQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      .+.+|+.++|.|.+.|. |.| .|.|+++|..+.... .......+    .+.|.|.++..+| |.|+|.|.|..|....
T Consensus       138 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~  215 (222)
T 1q9r_B          138 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT-FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  215 (222)
T ss_dssp             CCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE-EEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             cccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEe-ccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcE
Confidence            35679999999999885 888 999999987654211 11111122    2468999999999 9999999999998776


Q ss_pred             EEEEe
Q psy12422        274 KCKLT  278 (356)
Q Consensus       274 ~~~l~  278 (356)
                      ...+.
T Consensus       216 ~~~i~  220 (222)
T 1q9r_B          216 DKKIV  220 (222)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            66554

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.87  E-value=6.5e-21  Score=155.65  Aligned_cols=174  Identities=17%  Similarity=0.153  Sum_probs=115.6

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEE---c---------------ccCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NRE---L---------------SKRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~---l---------------~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.+.|  .+.+.|||.  +..   +               ...++.+..  ..+..+|+|.+++.+|+|.|
T Consensus        17 G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y   96 (256)
T 3umt_A           17 GASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSEDSAVY   96 (256)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcccCEEE
Confidence            78999999998876  678999983  211   1               012333322  24566899999999999999


Q ss_pred             EEEEEeC----CceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceE
Q psy12422         57 KCVATNK----HGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTT  132 (356)
Q Consensus        57 ~C~a~n~----~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~  132 (356)
                      .|.+.|.    .+.....+.|.|...+......                                               
T Consensus        97 ~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~-----------------------------------------------  129 (256)
T 3umt_A           97 YCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGG-----------------------------------------------  129 (256)
T ss_dssp             EEEECCSTTCCSCEECCCEEEEECC-------------------------------------------------------
T ss_pred             EEEEccCCCccccEECCCEEEEEcCCCccccCc-----------------------------------------------
Confidence            9999887    3333344556664321000000                                               


Q ss_pred             EEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEE
Q psy12422        133 TQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAV  212 (356)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~  212 (356)
                                                                 .  ..   .....+|.+...+....+.+|++++|.|.
T Consensus       130 -------------------------------------------~--~~---~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  161 (256)
T 3umt_A          130 -------------------------------------------G--SG---GGGSTDIQLTQSPSSLSASLGERVSITCR  161 (256)
T ss_dssp             -------------------------------------------------------CCCCEEEECSEEEECTTCCEEEEEE
T ss_pred             -------------------------------------------c--cC---CCCccccEEEcCCCeEEEECCCCEEEEEE
Confidence                                                       0  00   00012455555666778999999999999


Q ss_pred             EcCCCCCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        213 VKGDPEPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       213 ~~g~p~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      +.+.|.+.+.|+|+  +..+.            ...++.........+|+|.+++.+|+|.|.|.|.|..+
T Consensus       162 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  232 (256)
T 3umt_A          162 ASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSP  232 (256)
T ss_dssp             ESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSS
T ss_pred             EecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCC
Confidence            99999899999983  22111            12344445556677899999999999999999998654

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.87  E-value=1e-20  Score=168.57  Aligned_cols=248  Identities=12%  Similarity=0.121  Sum_probs=139.9

Q ss_pred             CCceEEEEEeccC-CC-C-eeEEeeCCEEcccCCe-eEE-ecCCe----EEEEEeeCCCCCCeEEEEEEEeCCcee-EEE
Q psy12422          1 MQNVIKVKVGSTK-PP-P-TVKWYKGNRELSKRDY-SMS-YSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTD-ETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~-~v~W~k~g~~l~~~~~-~~~-~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~   70 (356)
                      |+++.|.|.+.|. |. | .|+|+|++.......+ ... ..++.    ..|+|..++.+|+|.|+|.|.|..+.. ...
T Consensus       141 g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  220 (475)
T 1iga_A          141 DGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVT  220 (475)
T ss_pred             CCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeee
Confidence            6889999999887 65 4 9999999864321110 011 12332    258888888899999999999987642 223


Q ss_pred             EEEEEeccc---------------cchhh-hh-hcccccccCccceeeecccC--C---ceeeecccccccCCcccc---
Q psy12422         71 CVVIVESEE---------------ESKEQ-QE-LAHNFLYSGDRKYIEKHIRP--A---PAIITTRQEIKSSYSSHT---  125 (356)
Q Consensus        71 ~~l~v~~~~---------------~~~~~-~~-~~~~~~~~g~~~~l~c~~~p--~---p~i~w~~~~~~~~~~~~~---  125 (356)
                      +.+.|...+               ..+.. .. .....+.+|+.+.|.|.+..  +   +.+.| . +.........   
T Consensus       221 v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~  298 (475)
T 1iga_A          221 VPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPE  298 (475)
T ss_pred             EecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccCce
Confidence            333231100               01110 11 11122589999999999872  2   47999 3 3222211000   


Q ss_pred             -CCCCceE----EE----EeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccC
Q psy12422        126 -DDTGRTT----TQ----MSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKL  196 (356)
Q Consensus       126 -~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  196 (356)
                       ...+...    ..    ...+.+.|.|.+.+.....                    .....+.+  .....+|.+...+
T Consensus       299 ~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~--------------------~~~~~v~~--~~~~~~P~v~~~~  356 (475)
T 1iga_A          299 RDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT--------------------PLTATLSK--SGNTFRPEVHLLP  356 (475)
T ss_pred             ECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCC--------------------ceEEEeec--CCCCCCCeEEEEC
Confidence             0001000    00    1122344444443222111                    11112211  1124556655443


Q ss_pred             -CceeecCCCeEEEEEEEcCCCC--CeEEEEECCEEccCCCcee---EEE---eCC----EEEEEEccCCCCCCeEEEEE
Q psy12422        197 -TDKTIDDGQCLDLSAVVKGDPE--PRVSWTKNGQPLNSSNILD---LKY---KNG----VASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       197 -~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~g~~~~~~~~~~---~~~---~~~----~~~L~i~~v~~~d~G~Y~C~  263 (356)
                       ....+.+|+.+.|.|.+.|+++  +.|.|+|||..+.......   ...   .++    .+.|.|.....+|.|.|+|.
T Consensus       357 ~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~  436 (475)
T 1iga_A          357 PPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCM  436 (475)
T ss_pred             CChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEE
Confidence             3334778999999999988643  4899999999887553111   111   111    24688888888899999999


Q ss_pred             EEcCCCceE
Q psy12422        264 ATNSLGTAE  272 (356)
Q Consensus       264 a~n~~g~~~  272 (356)
                      |.|......
T Consensus       437 a~n~~l~~~  445 (475)
T 1iga_A          437 VGHEALPLA  445 (475)
T ss_pred             EEcCCCCCc
Confidence            999876543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.87  E-value=8.2e-22  Score=158.39  Aligned_cols=151  Identities=23%  Similarity=0.435  Sum_probs=114.0

Q ss_pred             CCCCeecccC----CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee-EEEeCCEEEEEEccCCCCCCeEEE
Q psy12422        187 MTPPQFANKL----TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD-LKYKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       187 ~~~p~~~~~~----~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      ..+|.+...+    ....+.+|+++.|.|.+.|.|.+.+.|+++|..+....... .....+...|.|.+++.+|+|.|+
T Consensus        13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   92 (231)
T 3ojm_B           13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT   92 (231)
T ss_dssp             CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred             ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence            4456665444    67889999999999999999999999999999987554321 122333348999999999999999


Q ss_pred             EEEEcCCCceEEEEEEecCC----CCcc--------c-------------------eeEEeC------------------
Q psy12422        262 CTATNSLGTAETKCKLTPLN----SSNI--------L-------------------DLKYKN------------------  292 (356)
Q Consensus       262 C~a~n~~g~~~~~~~l~p~~----~~~~--------~-------------------~~~~~~------------------  292 (356)
                      |.|.|..|.....+.+....    .+.+        .                   .+.|..                  
T Consensus        93 C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~  172 (231)
T 3ojm_B           93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLK  172 (231)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEE
T ss_pred             EEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEe
Confidence            99999999877766665221    1100        0                   344432                  


Q ss_pred             ----------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCC
Q psy12422        293 ----------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANL  337 (356)
Q Consensus       293 ----------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  337 (356)
                                ....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|..+.
T Consensus       173 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~  227 (231)
T 3ojm_B          173 VLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPG  227 (231)
T ss_dssp             EEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC----
T ss_pred             EecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCc
Confidence                      123599999999999999999999999999999999999988664

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.87  E-value=5.5e-21  Score=156.08  Aligned_cols=81  Identities=20%  Similarity=0.248  Sum_probs=61.6

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCC-CeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPE-PRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVF  253 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~  253 (356)
                      ++.+...+....+.+|++++|.|.+.+.|. +.+.|+|.  +..+.            ...++.........+|.|.+++
T Consensus       149 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  228 (256)
T 3juy_B          149 EIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVE  228 (256)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCC
Confidence            344555566778999999999999998886 88999982  22221            1234445556667789999999


Q ss_pred             CCCCeEEEEEEEcCCC
Q psy12422        254 PEDEGVYVCTATNSLG  269 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~g  269 (356)
                      .+|+|.|.|.|.|...
T Consensus       229 ~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          229 PEDFALYYCQVYGASS  244 (256)
T ss_dssp             GGGCSEEEEEECCSSC
T ss_pred             HhHCEEEEEEEeeCCC
Confidence            9999999999998644

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.87  E-value=1.6e-21  Score=148.61  Aligned_cols=147  Identities=15%  Similarity=0.177  Sum_probs=104.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc---C--------CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK---R--------DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~---~--------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |++|+|.|.+.+ |.+.|.|+|++..+..   .        +..........+|+|.+++.+|+|.|+|.+.|..|  ..
T Consensus        10 G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~--~~   86 (171)
T 1ccz_A           10 YGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD--TM   86 (171)
T ss_dssp             TCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS--CE
T ss_pred             CCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCCC--cE
Confidence            899999999854 8899999999875431   0        00112211223899999999999999999998877  56


Q ss_pred             EEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecccccccccccc
Q psy12422         70 NCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNA  149 (356)
Q Consensus        70 ~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (356)
                      .+.|.|..++                                                                      
T Consensus        87 ~~~L~V~~~~----------------------------------------------------------------------   96 (171)
T 1ccz_A           87 KFFLYVLEMV----------------------------------------------------------------------   96 (171)
T ss_dssp             EEEEEEECCC----------------------------------------------------------------------
T ss_pred             EEEEEEECcC----------------------------------------------------------------------
Confidence            6777776431                                                                      


Q ss_pred             CCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEE
Q psy12422        150 TSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~  229 (356)
                                                            ..|.+......        ..|.|.+.+.|.|.+.|+++|..
T Consensus        97 --------------------------------------~~p~i~~~~~~--------~~L~C~~~~~p~p~i~W~~~~~~  130 (171)
T 1ccz_A           97 --------------------------------------SKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEH  130 (171)
T ss_dssp             --------------------------------------CCCEEEEETTT--------TEEEEECSSCSSCEEEEEETTEE
T ss_pred             --------------------------------------CCCEEEEecCC--------cEEEEEeCCCCCcEEEEEECCEE
Confidence                                                  11222211110        27899999999999999999988


Q ss_pred             ccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        230 LNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       230 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      +......         .|.+.  ...|+|.|+|.|.|..+.......+
T Consensus       131 l~~~~~~---------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          131 LRSLRQK---------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             EEEESSS---------EEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             CcCCcce---------EEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence            7633211         34443  3778999999999999988776655

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.87  E-value=5.1e-22  Score=161.82  Aligned_cols=169  Identities=15%  Similarity=0.181  Sum_probs=113.2

Q ss_pred             CCceEEEEEeccCC-----CCeeEEeeCC--EEc-----------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKP-----PPTVKWYKGN--REL-----------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p-----~~~v~W~k~g--~~l-----------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|.+.+.|     .+.|.|||++  ..+           .  ..++.....++..+|+|.+++.+|+|.|.|.+
T Consensus        49 G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~  128 (252)
T 3bkj_L           49 GEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQ  128 (252)
T ss_dssp             TSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCEEEEEEE
Confidence            78999999999887     6899999954  111           0  12444444566779999999999999999999


Q ss_pred             EeCCceeE-EEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecc
Q psy12422         61 TNKHGTDE-TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLS  139 (356)
Q Consensus        61 ~n~~g~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (356)
                      .|..+... ....|.|...                                                             
T Consensus       129 ~~~~~~~~~~~~~l~V~~~-------------------------------------------------------------  147 (252)
T 3bkj_L          129 ASLVPLTFGAGTKLELKRA-------------------------------------------------------------  147 (252)
T ss_dssp             CSBSSCEECCCEEEEECCC-------------------------------------------------------------
T ss_pred             EcCCccEECCCEEEEEeCC-------------------------------------------------------------
Confidence            88754321 1234444321                                                             


Q ss_pred             ccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC-CCC
Q psy12422        140 SNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPE  218 (356)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~  218 (356)
                                                                     ..+|.+...+....+.+|+.++|.|.+.| .|+
T Consensus       148 -----------------------------------------------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~  180 (252)
T 3bkj_L          148 -----------------------------------------------DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK  180 (252)
T ss_dssp             -----------------------------------------------CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSS
T ss_pred             -----------------------------------------------CcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCC
Confidence                                                           12233333222222446899999999987 454


Q ss_pred             C-eEEEEECCEEccCCCceeE--E-EeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        219 P-RVSWTKNGQPLNSSNILDL--K-YKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       219 p-~i~W~~~g~~~~~~~~~~~--~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      + .|.|+++|..+........  . ..++    .+.|.|.++..+|+|.|+|.|.|..........+
T Consensus       181 ~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p~~~~~  247 (252)
T 3bkj_L          181 DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  247 (252)
T ss_dssp             CCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred             CcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCCeeEee
Confidence            4 7999999998765411100  0 0111    2469999999999999999999988765444444

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.86  E-value=2e-20  Score=156.82  Aligned_cols=150  Identities=25%  Similarity=0.423  Sum_probs=120.8

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC-ceeEE-EeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-ILDLK-YKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~-~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ..+|.|...+.+..+.+|+++.|.|.+.|.|.+.+.|+++|..+.... ++... ..++...|.|.+++.+|+|.|+|.|
T Consensus         2 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a   81 (305)
T 2nzi_A            2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (305)
T ss_dssp             CCCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEE
Confidence            357888888888999999999999999999999999999999887543 33332 3456679999999999999999999


Q ss_pred             EcCCCceEEEEEEecCCCCc------------cc-------------------eeEEeC-----------------CeEE
Q psy12422        265 TNSLGTAETKCKLTPLNSSN------------IL-------------------DLKYKN-----------------GVAS  296 (356)
Q Consensus       265 ~n~~g~~~~~~~l~p~~~~~------------~~-------------------~~~~~~-----------------~~~~  296 (356)
                      .|..|.....+.|.....+.            +.                   .+.|..                 ....
T Consensus        82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~  161 (305)
T 2nzi_A           82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS  161 (305)
T ss_dssp             EETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEE
T ss_pred             EcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceE
Confidence            99999877776666221110            00                   334432                 3468


Q ss_pred             EEEec-CCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCC
Q psy12422        297 LQIQE-VFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAAN  336 (356)
Q Consensus       297 L~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  336 (356)
                      |.|.+ +..+|+|.|+|.|.|..|..+..+.|.|..+|..+
T Consensus       162 l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p  202 (305)
T 2nzi_A          162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPP  202 (305)
T ss_dssp             EEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCC
T ss_pred             EEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCC
Confidence            99999 99999999999999999999999999999888654

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.86  E-value=1e-21  Score=155.42  Aligned_cols=75  Identities=15%  Similarity=0.271  Sum_probs=54.3

Q ss_pred             eecCCCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCceeEEEeC---CEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        200 TIDDGQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNILDLKYKN---GVASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      .+.+|+.++|.|.+.|. |.| .+.|+++|..+...........+   ..+.|.|..+..+| |.|+|.|.|..|.....
T Consensus       129 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          129 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             SCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            45789999999999886 888 89999988754211110111111   13469999999877 99999999999987655


Q ss_pred             E
Q psy12422        275 C  275 (356)
Q Consensus       275 ~  275 (356)
                      .
T Consensus       208 ~  208 (210)
T 3d9a_H          208 K  208 (210)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.86  E-value=2.9e-21  Score=156.26  Aligned_cols=154  Identities=25%  Similarity=0.451  Sum_probs=108.7

Q ss_pred             CCCeeccc----CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCce-eEEEeCCEEEEEEccCCCCCCeEEEE
Q psy12422        188 TPPQFANK----LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL-DLKYKNGVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       188 ~~p~~~~~----~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      .+|.+..+    +....+.+|+++.|.|.+.|.|.+.+.|+++|..+...... ..........|.|.+++.+|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            35555433    34678999999999999999999999999999998754332 12223334489999999999999999


Q ss_pred             EEEcCCCceEEEEEEecCC----CCcc--------c-------------------eeEEeC-------------------
Q psy12422        263 TATNSLGTAETKCKLTPLN----SSNI--------L-------------------DLKYKN-------------------  292 (356)
Q Consensus       263 ~a~n~~g~~~~~~~l~p~~----~~~~--------~-------------------~~~~~~-------------------  292 (356)
                      .|.|..|.......+....    .+.+        .                   .+.|..                   
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~  169 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV  169 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEE
T ss_pred             EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeee
Confidence            9999999877766665211    0000        0                   444432                   


Q ss_pred             ----------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCCCCC
Q psy12422        293 ----------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSP  341 (356)
Q Consensus       293 ----------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~  341 (356)
                                ....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|+++|.++.....
T Consensus       170 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~ve  228 (241)
T 3grw_A          170 LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVE  228 (241)
T ss_dssp             EEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC------------
T ss_pred             eeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCcccee
Confidence                      2456999999999999999999999999999999999999987655433

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.86  E-value=3e-21  Score=158.81  Aligned_cols=110  Identities=17%  Similarity=0.266  Sum_probs=66.3

Q ss_pred             ceeecCCCeEEEEEEE---cCCCCCeEEEEEC-CEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        198 DKTIDDGQCLDLSAVV---KGDPEPRVSWTKN-GQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~---~g~p~p~i~W~~~-g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      ...+.+|+.+.|.|.+   .+.|.|.+.|+++ +.......           .+.+.+-.  ..+ |.-    ..+    
T Consensus       127 ~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~-----------~~~~~~~~--~~~-~~~----~~~----  184 (268)
T 3mj6_A          127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEET-----------VLSYDSNM--RSG-KFQ----SLG----  184 (268)
T ss_dssp             EEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEE-----------EEEEETTS--SSC-EEE----CSS----
T ss_pred             ccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCccee-----------EEEecCCC--Ccc-ccc----ccc----
Confidence            4568889999999999   6789999999994 43222111           11110000  000 000    000    


Q ss_pred             EEEEecCCCCccceeEE----eCCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec-CCCCCC
Q psy12422        274 KCKLTPLNSSNILDLKY----KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST-PAANLG  338 (356)
Q Consensus       274 ~~~l~p~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~-p~~~~~  338 (356)
                               .....+.+    ......|.|.+++.+|+|.|+|.|.|..|.....+.|.|... |.+...
T Consensus       185 ---------~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~  245 (268)
T 3mj6_A          185 ---------RFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTIS  245 (268)
T ss_dssp             ---------TTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-------
T ss_pred             ---------ccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCeeeeC
Confidence                     00001111    125678999999999999999999999999999999999554 444333

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.86  E-value=4.2e-21  Score=151.05  Aligned_cols=138  Identities=18%  Similarity=0.309  Sum_probs=103.3

Q ss_pred             CeecccCCceeecCCCeEEEEEEEc-CCCCCeEEEEECCEEccCCCceeEEEeC--CEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKN--GVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      |.|.... +..+.+|+.+.|.|.+. +.|.|.++|++||..+..+.++.+..+.  +...|.|.+++.+|+|.|+|.|.|
T Consensus         4 p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A            4 PFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             --CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             CeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            4444433 56899999999999995 5799999999999999887777666654  667899999999999999999999


Q ss_pred             CCCceEEEEEEe-------------------------c----------------------CCCCccceeEEeC-------
Q psy12422        267 SLGTAETKCKLT-------------------------P----------------------LNSSNILDLKYKN-------  292 (356)
Q Consensus       267 ~~g~~~~~~~l~-------------------------p----------------------~~~~~~~~~~~~~-------  292 (356)
                        |.+.....+.                         |                      ........+.|.+       
T Consensus        83 --g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~  160 (207)
T 3rbs_A           83 --GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV  160 (207)
T ss_dssp             --TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECC
T ss_pred             --CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCC
Confidence              4433333221                         1                      0000001334432       


Q ss_pred             --------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy12422        293 --------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR  330 (356)
Q Consensus       293 --------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  330 (356)
                              +...|.|.+++.+|+|.|+|.|.|..|..++.+.|.++
T Consensus       161 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          161 DEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             CCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence                    23469999999999999999999999999999998765

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.86  E-value=1.5e-21  Score=155.96  Aligned_cols=77  Identities=12%  Similarity=0.066  Sum_probs=52.1

Q ss_pred             ecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeCC---EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        201 IDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNG---VASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       201 v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ...++.+.+.|.+ .+.|++.+.|++++..+..........++.   .+.|.|.+++.+|+|.|+|.|.|..+....+..
T Consensus       133 ~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~  212 (225)
T 4fmk_A          133 IGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLP  212 (225)
T ss_dssp             CSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEE
T ss_pred             ecceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEE
Confidence            3456666666665 678889999999876543322111111111   247999999999999999999999887654443


Q ss_pred             E
Q psy12422        277 L  277 (356)
Q Consensus       277 l  277 (356)
                      +
T Consensus       213 v  213 (225)
T 4fmk_A          213 V  213 (225)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.86  E-value=8.1e-21  Score=154.25  Aligned_cols=169  Identities=17%  Similarity=0.202  Sum_probs=108.9

Q ss_pred             CCceEEEEEeccCC-----CCeeEEeeCC--EE---cc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKP-----PPTVKWYKGN--RE---LS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p-----~~~v~W~k~g--~~---l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|.+.+.|     .+.+.|||+.  ..   +.          ..++.....++..+|+|.+++.+|+|.|.|.+
T Consensus        16 G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   95 (247)
T 1svz_A           16 GDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQ   95 (247)
T ss_dssp             TCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCEEEEEEE
Confidence            78999999999888     6899999942  21   10          23444444556679999999999999999999


Q ss_pred             EeCCcee-EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecc
Q psy12422         61 TNKHGTD-ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLS  139 (356)
Q Consensus        61 ~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (356)
                      .|..+.. ...+.|.|...+.....                                                       
T Consensus        96 ~n~~~~~~~~~~~l~V~~~~~~~~~-------------------------------------------------------  120 (247)
T 1svz_A           96 GSHFPPTFGGGTKLEIKGGGGSGGG-------------------------------------------------------  120 (247)
T ss_dssp             CSSSSCEECCCEEEEEC---------------------------------------------------------------
T ss_pred             ccCCccEECCCEEEEEECCcccccc-------------------------------------------------------
Confidence            9875532 22355666532110000                                                       


Q ss_pred             ccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCC--
Q psy12422        140 SNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP--  217 (356)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p--  217 (356)
                                                   ..              ....++.....+....+.+|++++|.|.+.+.|  
T Consensus       121 -----------------------------~~--------------~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~  157 (247)
T 1svz_A          121 -----------------------------GS--------------GGGGSEVQLQQSGPELKKPGETVKISCKATNYAFT  157 (247)
T ss_dssp             --------------------------------------------------CCEEEECCCEEECTTCCEEEEEEEESSCGG
T ss_pred             -----------------------------cc--------------ccccCceEEeCCCceeecCCCcEEEEEEEcCcccC
Confidence                                         00              000111111222234588999999999998875  


Q ss_pred             CCeEEEEECC--EEcc-----------------CCCceeEEE--eCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        218 EPRVSWTKNG--QPLN-----------------SSNILDLKY--KNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       218 ~p~i~W~~~g--~~~~-----------------~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .+.+.|+|++  ..+.                 ...++....  .....+|.|.+++.+|+|.|.|.|.|.
T Consensus       158 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          158 DYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             GSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             CcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            5689999953  2110                 023333332  234579999999999999999999996

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.86  E-value=1.1e-21  Score=161.18  Aligned_cols=205  Identities=16%  Similarity=0.238  Sum_probs=127.8

Q ss_pred             cccccCccceeeeccc---CCc--eeeecccccccCCccccCCCCceEEEEe-----eccc--cccccccccCCCcccee
Q psy12422         90 NFLYSGDRKYIEKHIR---PAP--AIITTRQEIKSSYSSHTDDTGRTTTQMS-----TLSS--NYSSSTNNATSPSKKIT  157 (356)
Q Consensus        90 ~~~~~g~~~~l~c~~~---p~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~  157 (356)
                      ..+.+|+.+.|.|.+.   |.|  .+.|++++..+........ ........     .+.+  .|.|...+....     
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~-~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~-----   86 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN-DSFSAKASVSVTAEDEGTQRLTCAVILGNQS-----   86 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECS-SEEEEEEEEEECGGGCEEEEEEEEEEETTEE-----
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCC-CeEEEEeecccccccCCcceEEEEEecCCCC-----
Confidence            4678999999999986   444  8999998876644211111 11111111     2222  255544322111     


Q ss_pred             eeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee
Q psy12422        158 RRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~  237 (356)
                                     ......+.+..   ..+|.+.  +....+.+|+.+.|.|.+.  |.|.+.|  +|..+...    
T Consensus        87 ---------------~~~~~~l~V~~---~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~----  138 (265)
T 2oz4_A           87 ---------------QETLQTVTIYS---FPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL----  138 (265)
T ss_dssp             ---------------EEEEEEEEEEC---CCCCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCC----
T ss_pred             ---------------cEEEEEEEEeC---CCCceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCC----
Confidence                           11223333310   2234444  3455688999999999998  8999999  77776322    


Q ss_pred             EEEeCCEEEEEEccCCCCCCeEEEEEEEcCC-CceE---EEEEEe----cCCC----C-ccc------------------
Q psy12422        238 LKYKNGVASLQIQEVFPEDEGVYVCTATNSL-GTAE---TKCKLT----PLNS----S-NIL------------------  286 (356)
Q Consensus       238 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~-g~~~---~~~~l~----p~~~----~-~~~------------------  286 (356)
                          +....|.|..+..+|+|.|+|.|.|.. |...   ..+.|.    |...    + ...                  
T Consensus       139 ----~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~  214 (265)
T 2oz4_A          139 ----GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL  214 (265)
T ss_dssp             ----SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESC
T ss_pred             ----CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCC
Confidence                233578999999999999999998654 6654   444444    2110    1 000                  


Q ss_pred             -eeEEeCCeE----EEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy12422        287 -DLKYKNGVA----SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST  332 (356)
Q Consensus       287 -~~~~~~~~~----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  332 (356)
                       .+.|.++..    ...+..++.+|+|.|+|.|.|..|..+..+.|.|+++
T Consensus       215 p~i~W~~~~~~~~~~g~~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~p  265 (265)
T 2oz4_A          215 PELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  265 (265)
T ss_dssp             CEEEEEETTTEECCTTSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CeEEEEECCcccCCCCcEEEeehhhCeEEEEEEECCCCcEEEEEEEEEecC
Confidence             455544221    1122358899999999999999999999999999865

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.86  E-value=2.5e-21  Score=151.01  Aligned_cols=145  Identities=30%  Similarity=0.441  Sum_probs=108.9

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...+....+.+|+++.|.|.+.|+|.+.+.|+++|..+... .++.....+  ..|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG--QLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGG--TEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCc--cEEEEcCCCcccCeEEEEEEE
Confidence            45677877788889999999999999999999999999999988753 333333233  379999999999999999999


Q ss_pred             cCCCce-EEEEEEe----cCC---CCccc-------------------eeEEeC--------------CeEEEEEecCCC
Q psy12422        266 NSLGTA-ETKCKLT----PLN---SSNIL-------------------DLKYKN--------------GVASLQIQEVFP  304 (356)
Q Consensus       266 n~~g~~-~~~~~l~----p~~---~~~~~-------------------~~~~~~--------------~~~~L~i~~v~~  304 (356)
                      |..|.. .....+.    |..   +....                   .+.|..              ..+.|.|.+++.
T Consensus        83 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~  162 (192)
T 2iep_A           83 NGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQK  162 (192)
T ss_dssp             CSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCG
T ss_pred             cCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCCh
Confidence            998873 3333333    110   00000                   344532              234799999999


Q ss_pred             CCCeEEEEEEEcCCcceEE-EEEEEEEecC
Q psy12422        305 EDEGVYVCTATNSLGTAET-KCKLTVRSTP  333 (356)
Q Consensus       305 ~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p  333 (356)
                      +|+|.|+|.|.|..|...+ .+.|.|+++|
T Consensus       163 ~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          163 EDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             hhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            9999999999999998854 7999999876

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.86  E-value=3.4e-20  Score=144.27  Aligned_cols=136  Identities=24%  Similarity=0.372  Sum_probs=105.5

Q ss_pred             CCeecccCCceeecC-CCeEEEEEEEcCCCC--CeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        189 PPQFANKLTDKTIDD-GQCLDLSAVVKGDPE--PRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~-g~~~~l~C~~~g~p~--p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      +|.+...+ ...+.+ |+.+.|.|.+.+.|.  +.+.|+++|..+.......     ....|.|.+++.+|+|.|+|.|.
T Consensus         3 ~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~   76 (190)
T 2wv3_A            3 EPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVYH   76 (190)
T ss_dssp             CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEEE
Confidence            56666543 455666 999999999998887  7899999999987654322     44689999999999999999999


Q ss_pred             cCCCceEEEEEEecCCCCccc--------------------------eeEEeC----------------------CeEEE
Q psy12422        266 NSLGTAETKCKLTPLNSSNIL--------------------------DLKYKN----------------------GVASL  297 (356)
Q Consensus       266 n~~g~~~~~~~l~p~~~~~~~--------------------------~~~~~~----------------------~~~~L  297 (356)
                      |. +.....+.|.....|.+.                          .+.|..                      ....|
T Consensus        77 n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L  155 (190)
T 2wv3_A           77 FV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTEL  155 (190)
T ss_dssp             ET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEE
T ss_pred             eC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEE
Confidence            99 877777666633222211                          333432                      12379


Q ss_pred             EEecCC-CCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        298 QIQEVF-PEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       298 ~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                      .|.+++ .+|+|.|+|.|.|..|..+..+.|.|++
T Consensus       156 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~V  190 (190)
T 2wv3_A          156 NIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV  190 (190)
T ss_dssp             EECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEEeccccCCCEEEEEEEEecCCcceeEEEEEEEC
Confidence            999999 7999999999999999999999999874

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.86  E-value=1.3e-20  Score=152.55  Aligned_cols=169  Identities=18%  Similarity=0.171  Sum_probs=108.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--EE---cc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--RE---LS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~~---l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++|+|.|.+.+.|.+.+.|||+.  ..   +.          ..++.....++..+|+|.+++.+|+|.|.|.+.|..+
T Consensus        16 G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~   95 (242)
T 2znx_A           16 GNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXP   95 (242)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEeEecCCc
Confidence            789999999999999999999952  11   10          1234444445667999999999999999999998754


Q ss_pred             ee-EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccc
Q psy12422         66 TD-ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSS  144 (356)
Q Consensus        66 ~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (356)
                      .. ...+.|.|..++......                                                           
T Consensus        96 ~~~~~~~~L~V~~~~~~~~~~-----------------------------------------------------------  116 (242)
T 2znx_A           96 YTFGGGTKLEITGGGGSGGGG-----------------------------------------------------------  116 (242)
T ss_dssp             CEECCCEEEEEC--------------------------------------------------------------------
T ss_pred             eEECCCEEEEEcCCCCCCccc-----------------------------------------------------------
Confidence            32 233456665331100000                                                           


Q ss_pred             cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCC--CCeEE
Q psy12422        145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP--EPRVS  222 (356)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p--~p~i~  222 (356)
                                                         ..    ...++.....+....+.+|++++|.|.+.+.|  .+.+.
T Consensus       117 -----------------------------------~~----~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~  157 (242)
T 2znx_A          117 -----------------------------------SG----GGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXS  157 (242)
T ss_dssp             ---------------------------------------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEE
T ss_pred             -----------------------------------cc----ccccceeeecCCcceecCCCeEEEEEEEEccccCCccee
Confidence                                               00    00111111222234588999999999999886  47899


Q ss_pred             EEEC--CEEcc----------------CCCceeEEEe--CCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        223 WTKN--GQPLN----------------SSNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       223 W~~~--g~~~~----------------~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      |+++  +..+.                ...++....+  ....+|.|.+++.+|+|.|.|.|.|.
T Consensus       158 W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          158 XIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            9994  22210                1233333322  34578999999999999999999984

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.86  E-value=8.1e-21  Score=154.79  Aligned_cols=173  Identities=14%  Similarity=0.163  Sum_probs=114.2

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEcc------------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NRELS------------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l~------------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.|.+  .+.+.|||.  +..+.                  ..++.+..  ..+.++|+|.+++.+|+|.|
T Consensus        16 G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y   95 (253)
T 3uzq_A           16 GASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSGDTAVY   95 (253)
T ss_dssp             TCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCcccCEEE
Confidence            78999999998854  678999992  21110                  12333332  23467899999999999999


Q ss_pred             EEEEEeCCcee-EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEE
Q psy12422         57 KCVATNKHGTD-ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQM  135 (356)
Q Consensus        57 ~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~  135 (356)
                      .|.+.|..+.. .....|.|.........                                                   
T Consensus        96 ~C~~~~~~~~~~~~~~~l~V~~~~~~~~~---------------------------------------------------  124 (253)
T 3uzq_A           96 YCSRGWEGFAYWGQGTLVTVSAGGGGSGG---------------------------------------------------  124 (253)
T ss_dssp             EEEECSSSCCEECCCEEEEECSSSCCCCC---------------------------------------------------
T ss_pred             EEEEeeCCccEECCCcEEEEecCCccccc---------------------------------------------------
Confidence            99999865443 23445555421000000                                                   


Q ss_pred             eeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC
Q psy12422        136 STLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG  215 (356)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g  215 (356)
                                                              ..     ......+|.+...+....+.+|++++|.|.+.+
T Consensus       125 ----------------------------------------~~-----~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  159 (253)
T 3uzq_A          125 ----------------------------------------GG-----SGGGGSELVMTQTPASLAVSLGQRATISCRASE  159 (253)
T ss_dssp             ------------------------------------------------------CCEEEECSEEEECTTSCEEEEEEESS
T ss_pred             ----------------------------------------cc-----cCCCcccceEECcCCeEEEeCCCCEEEEEEecC
Confidence                                                    00     000023455555566778999999999999999


Q ss_pred             CCCC----eEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        216 DPEP----RVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       216 ~p~p----~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      .|.+    .+.|+|+  +..+.            ...++.........+|.|.+++.+|+|.|.|.|.|..+
T Consensus       160 ~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~  231 (253)
T 3uzq_A          160 NVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVP  231 (253)
T ss_dssp             CCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             ccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCC
Confidence            8887    8999984  22211            11344444556677899999999999999999999654

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=5.2e-21  Score=155.32  Aligned_cols=155  Identities=12%  Similarity=0.109  Sum_probs=105.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCee--EEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc-----eeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYS--MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG-----TDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g-----~~~~~~~l   73 (356)
                      |++|+|.|.+.+ +.+.|.|||+|..+......  .........|.|.+++.+|+|.|+|.+.|...     ..+..+.|
T Consensus        21 G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L   99 (257)
T 1b6u_A           21 EETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDI   99 (257)
T ss_dssp             SCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEE
T ss_pred             CCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEE
Confidence            789999999974 56789999998765321100  01122345899999999999999999986421     12334555


Q ss_pred             EEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCc
Q psy12422         74 IVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPS  153 (356)
Q Consensus        74 ~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (356)
                      .|.+.                                                                           
T Consensus       100 ~V~~~---------------------------------------------------------------------------  104 (257)
T 1b6u_A          100 VITGL---------------------------------------------------------------------------  104 (257)
T ss_dssp             EEECS---------------------------------------------------------------------------
T ss_pred             ecccC---------------------------------------------------------------------------
Confidence            55432                                                                           


Q ss_pred             cceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC
Q psy12422        154 KKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS  233 (356)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~  233 (356)
                                                       ..+|.+...+. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+...
T Consensus       105 ---------------------------------~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~  149 (257)
T 1b6u_A          105 ---------------------------------YEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERR  149 (257)
T ss_dssp             ---------------------------------SCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEEC
T ss_pred             ---------------------------------CCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcc
Confidence                                             22344443333 2578999999999998754 689999999776543


Q ss_pred             CceeEEE-eCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        234 NILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       234 ~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      ....... ......|.|.+++  |+|.|+|.|.|..
T Consensus       150 ~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~  183 (257)
T 1b6u_A          150 FSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRD  183 (257)
T ss_dssp             CBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSS
T ss_pred             cccccccCCceeEEEEecccc--cCEEEEEEEEcCC
Confidence            2111111 1124689999998  9999999999764

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.86  E-value=9e-21  Score=154.77  Aligned_cols=178  Identities=15%  Similarity=0.204  Sum_probs=111.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--EE---cc-----------cCCeeE--EecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--RE---LS-----------KRDYSM--SYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~~---l~-----------~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.+.+.|.+.+.|||..  ..   +.           ..++..  ....+..+|+|.+++.+|+|.|.|.+.|
T Consensus        18 G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~   97 (256)
T 3tf7_C           18 GASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSA   97 (256)
T ss_dssp             TSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEEC
T ss_pred             CCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEec
Confidence            789999999999999999999932  11   10           123333  2345667899999999999999999998


Q ss_pred             CCce----eEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeec
Q psy12422         63 KHGT----DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTL  138 (356)
Q Consensus        63 ~~g~----~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (356)
                      ..+.    ....+.|.|..........         +                                           
T Consensus        98 ~~~~~~~~~~~~~~l~V~~~~~~~~~~---------~-------------------------------------------  125 (256)
T 3tf7_C           98 KGTGSKLSFGKGAKLTVSPGGGGSGGG---------G-------------------------------------------  125 (256)
T ss_dssp             TTCTTCEEECCCEEEEEEC-------------------------------------------------------------
T ss_pred             CCCccceEECCCeEEEEeCCCCCcCCC---------C-------------------------------------------
Confidence            7542    1223455554210000000         0                                           


Q ss_pred             cccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC
Q psy12422        139 SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE  218 (356)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~  218 (356)
                                                    ......         .....+|.+...+....+.+|++++|.|.+.+. .
T Consensus       126 ------------------------------~~~~~~---------~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~  165 (256)
T 3tf7_C          126 ------------------------------SGGGGS---------GGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-H  165 (256)
T ss_dssp             ---------------------------------------------------CCEEESCSEEEEETTCCEEECEEECSC-C
T ss_pred             ------------------------------cCcccC---------CCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-c
Confidence                                          000000         000334556666677788899999999999877 7


Q ss_pred             CeEEEEECC--EEcc---------------CCCceeEEE-eCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        219 PRVSWTKNG--QPLN---------------SSNILDLKY-KNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       219 p~i~W~~~g--~~~~---------------~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      +.+.|++..  ....               ...++.... .....+|.|.+++.+|+|.|.|.|.|..|.
T Consensus       166 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          166 NYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             SEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             eEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            789999832  1110               011111111 223458999999999999999999998774

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.86  E-value=2.6e-20  Score=152.17  Aligned_cols=81  Identities=15%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVF  253 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~  253 (356)
                      ++.+...+....+.+|++++|.|.+.+.|.+ .+.|+|.  +..+.            ...++.........+|.|.+++
T Consensus       141 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  220 (257)
T 3gkz_A          141 QIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSME  220 (257)
T ss_dssp             CCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             ceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCC
Confidence            3455555666789999999999999998887 8999983  32221            0134444445566789999999


Q ss_pred             CCCCeEEEEEEEcCCC
Q psy12422        254 PEDEGVYVCTATNSLG  269 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~g  269 (356)
                      .+|+|.|.|.|.|...
T Consensus       221 ~~D~G~Y~C~~~~~~~  236 (257)
T 3gkz_A          221 AEDAASYFCHQWSSFP  236 (257)
T ss_dssp             GGGCEEEEEEECSSSS
T ss_pred             hHHCEEEEEEEccCCc
Confidence            9999999999988643

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.86  E-value=1.4e-21  Score=165.92  Aligned_cols=140  Identities=16%  Similarity=0.299  Sum_probs=99.6

Q ss_pred             cCCceeecCC---CeEEEEEE-EcCCCCCeEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEc
Q psy12422        195 KLTDKTIDDG---QCLDLSAV-VKGDPEPRVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       195 ~~~~~~v~~g---~~~~l~C~-~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      .+....+.+|   +.+.|.|. +.++|.|.+.|++++.......  ......+    ...|.|.+++.+|+|.|+|.|.|
T Consensus       138 ~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  215 (331)
T 3u83_A          138 TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ--EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNY  215 (331)
T ss_dssp             CSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEE--EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEE
T ss_pred             CCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccc--eeECCCCcEEEEEEEEEEeccccCCCEEEEEEec
Confidence            4466778888   78999998 7899999999999532211100  0111111    24699999999999999999999


Q ss_pred             CCCceEEEEEEecCCCCcc----------c-----------------e-eEEeC-----------CeEEEEEe-cCCCCC
Q psy12422        267 SLGTAETKCKLTPLNSSNI----------L-----------------D-LKYKN-----------GVASLQIQ-EVFPED  306 (356)
Q Consensus       267 ~~g~~~~~~~l~p~~~~~~----------~-----------------~-~~~~~-----------~~~~L~i~-~v~~~d  306 (356)
                      ..|.....+.|.+..+|.+          .                 . +.|..           ....|.|. +++.+|
T Consensus       216 ~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d  295 (331)
T 3u83_A          216 HMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSL  295 (331)
T ss_dssp             TTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGGG
T ss_pred             CCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCcccc
Confidence            9988777666652111110          0                 3 66654           23579999 999999


Q ss_pred             CeEEEEEEEcCCcceEEEEEEEEEecCCCC
Q psy12422        307 EGVYVCTATNSLGTAETKCKLTVRSTPAAN  336 (356)
Q Consensus       307 ~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  336 (356)
                      +|.|+|.|.|..|..+..+.|.|++.+...
T Consensus       296 ~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~  325 (331)
T 3u83_A          296 AGTYICEATNPIGTRSGQVEVNITEAAALE  325 (331)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECCBC-----
T ss_pred             CeEEEEEEEeccccceEEEEEEEeccchhh
Confidence            999999999999999999999999987643

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.85  E-value=4.1e-20  Score=160.42  Aligned_cols=146  Identities=25%  Similarity=0.467  Sum_probs=115.5

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEccC-----CCceeEEEeCCEEEEEEccCCCCCCeEEEE
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLNS-----SNILDLKYKNGVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      |.+.. +.+..+.+|+.+.|.|.+.|+|.|.|.|+++  |..+..     ..++..........|.|.+++.+|+|.|+|
T Consensus         2 P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   80 (389)
T 2jll_A            2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC   80 (389)
T ss_dssp             CEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEE
T ss_pred             CeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEE
Confidence            55554 4566788999999999999999999999999  888765     345555555567899999999999999999


Q ss_pred             EEEcCCCceEEEEEEecCCCCccc--------------------------eeEEeC-------------------CeEEE
Q psy12422        263 TATNSLGTAETKCKLTPLNSSNIL--------------------------DLKYKN-------------------GVASL  297 (356)
Q Consensus       263 ~a~n~~g~~~~~~~l~p~~~~~~~--------------------------~~~~~~-------------------~~~~L  297 (356)
                      .|.|..|.....+.|.+...|.+.                          .+.|..                   ....|
T Consensus        81 ~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L  160 (389)
T 2jll_A           81 EAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL  160 (389)
T ss_dssp             EEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEE
T ss_pred             EEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEE
Confidence            999999988877777622111110                          344432                   23579


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCC
Q psy12422        298 QIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAAN  336 (356)
Q Consensus       298 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  336 (356)
                      .|.++..+|+|.|+|.|.|..|.....+.|.|..+|..+
T Consensus       161 ~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P  199 (389)
T 2jll_A          161 EIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSP  199 (389)
T ss_dssp             EECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCC
T ss_pred             EECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCC
Confidence            999999999999999999999999999999887777544

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.85  E-value=5.3e-20  Score=150.26  Aligned_cols=177  Identities=20%  Similarity=0.278  Sum_probs=111.1

Q ss_pred             CCceEEEEEeccC--CCCeeEEeeCC--EEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTK--PPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~--p~~~v~W~k~g--~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.+.+.  |.+.+.|||+.  ..+             ...++.....++.++|+|.+++.+|+|.|.|.+.|.
T Consensus        17 G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (256)
T 3ux9_B           17 GQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYYCQVRDN   96 (256)
T ss_dssp             TCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEEEEEEEC
Confidence            7899999999877  78899999942  111             112444445556679999999999999999999986


Q ss_pred             Cce---eEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccc
Q psy12422         64 HGT---DETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSS  140 (356)
Q Consensus        64 ~g~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (356)
                      .+.   ....+.|.|...+....                      +.+.+.|....                        
T Consensus        97 ~~~~~~~~~~~~l~V~~~~~~~~----------------------~~~~~~~~~~~------------------------  130 (256)
T 3ux9_B           97 NENEWVFGGGTKLTVLGSGGSTI----------------------TSYNVYYTKLS------------------------  130 (256)
T ss_dssp             TTTEEEECCCEEEEEC----------------------------------------------------------------
T ss_pred             CCCceEECCCEEEEEECCCCCcC----------------------ccceeEEeecC------------------------
Confidence            542   22345666654321100                      00001110000                        


Q ss_pred             cccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCC--C
Q psy12422        141 NYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP--E  218 (356)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p--~  218 (356)
                                                                  ....++.+... ....+.+|++++|.|.+.+.|  .
T Consensus       131 --------------------------------------------~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~  165 (256)
T 3ux9_B          131 --------------------------------------------SSGSEVQLVES-GGGLVQPGGSLRLSCAASGFTFSS  165 (256)
T ss_dssp             ------------------------------------------------CCEEEEE-CCEEECTTCCEEEEEEEESSCGGG
T ss_pred             --------------------------------------------CCccceeEEcC-CCeEEcCCCeEEEEEEEeCCcccc
Confidence                                                        00111222222 234588999999999999877  6


Q ss_pred             CeEEEEEC--CEEcc-----------------CCCceeEEEe--CCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        219 PRVSWTKN--GQPLN-----------------SSNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       219 p~i~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      +.+.|+|+  +..+.                 ...++....+  ....+|.|.+++.+|+|.|.|.|.|..
T Consensus       166 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          166 YAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             SEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            78999985  32210                 1123444433  346789999999999999999999964

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.85  E-value=3.4e-20  Score=144.93  Aligned_cols=139  Identities=21%  Similarity=0.295  Sum_probs=106.5

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEc-CCCCCeEEEEECCEEccCCC--ceeEEEeCC-------EEEEEEccCCCCCCe
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSN--ILDLKYKNG-------VASLQIQEVFPEDEG  258 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~~~~--~~~~~~~~~-------~~~L~i~~v~~~d~G  258 (356)
                      +|.|...+.+..+.+|+++.|.|.+. |.|.+.+.|+++|..+....  +..+.....       ...|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            56777888889999999999999998 99999999999999988663  233332222       468999999999999


Q ss_pred             EEEEEEEcCCCceEEE-EEEecCCCCccc---------------------------eeEEeC------------CeEEEE
Q psy12422        259 VYVCTATNSLGTAETK-CKLTPLNSSNIL---------------------------DLKYKN------------GVASLQ  298 (356)
Q Consensus       259 ~Y~C~a~n~~g~~~~~-~~l~p~~~~~~~---------------------------~~~~~~------------~~~~L~  298 (356)
                      .|+|.|.|..|..... +.|.....|.+.                           .+.|..            ....|.
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~L~  161 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLH  161 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSCCEEEE
T ss_pred             EEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCCCCeEE
Confidence            9999999987754332 333311111110                           345543            457899


Q ss_pred             EecCCCCCCeEEEEEEEcCCcceE-EEEEEEE
Q psy12422        299 IQEVFPEDEGVYVCTATNSLGTAE-TKCKLTV  329 (356)
Q Consensus       299 i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V  329 (356)
                      |.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       162 i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          162 VPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             ECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             Ecccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            99987  89999999999999986 6899988

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.85  E-value=2e-20  Score=152.06  Aligned_cols=166  Identities=17%  Similarity=0.217  Sum_probs=106.4

Q ss_pred             CCceEEEEEeccCCCCe-----eEEeeCCEEccc--------CCeeEE-----------ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPPPT-----VKWYKGNRELSK--------RDYSMS-----------YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~-----v~W~k~g~~l~~--------~~~~~~-----------~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.|.|++.     |.|+|++.....        ......           ...+..+|.|.+++.+|+|.|
T Consensus        18 G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   97 (248)
T 3pv7_A           18 NDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEY   97 (248)
T ss_dssp             TSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGGCEEE
T ss_pred             CCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHHCeEE
Confidence            78999999999888876     999996322110        000000           112344699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEe
Q psy12422         57 KCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMS  136 (356)
Q Consensus        57 ~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~  136 (356)
                      +|.+.|..+.....+.|.|..+                                                          
T Consensus        98 ~C~~~~~~~~~~~~~~L~V~~~----------------------------------------------------------  119 (248)
T 3pv7_A           98 RCEVVVTPLKAQGTVQLEVVAS----------------------------------------------------------  119 (248)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBC----------------------------------------------------------
T ss_pred             EEEEEeCCccceeEEEEEEecC----------------------------------------------------------
Confidence            9999999888777788877642                                                          


Q ss_pred             eccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC-
Q psy12422        137 TLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG-  215 (356)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-  215 (356)
                                                                           |.+...+. ..+..|+.+.|.|.+.| 
T Consensus       120 -----------------------------------------------------P~v~~~~~-~~~~~~~~~~L~C~~~g~  145 (248)
T 3pv7_A          120 -----------------------------------------------------PASRLLLD-QVGMKENEDKYMCESSGF  145 (248)
T ss_dssp             -----------------------------------------------------CEEEEECC---------CEEEEEEEEE
T ss_pred             -----------------------------------------------------CceEEecC-CccccCCCcEEEEEEccE
Confidence                                                                 11111111 12345778889999988 


Q ss_pred             CCCC-eEEEEECCEEccCCCc-------eeEEEe-CC----EEEEEEccCCCCCCeEEEEEEEcCCCceEE--EEEEe
Q psy12422        216 DPEP-RVSWTKNGQPLNSSNI-------LDLKYK-NG----VASLQIQEVFPEDEGVYVCTATNSLGTAET--KCKLT  278 (356)
Q Consensus       216 ~p~p-~i~W~~~g~~~~~~~~-------~~~~~~-~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~--~~~l~  278 (356)
                      +|.| .|.|+++|..+.....       ...... .+    .+.|.|.....+|.|.|+|.|.|..+....  .+.|.
T Consensus       146 ~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~  223 (248)
T 3pv7_A          146 YPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLT  223 (248)
T ss_dssp             BSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC-
T ss_pred             ECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEE
Confidence            8998 9999999864432110       001111 11    257899999999999999999999987444  44443

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.85  E-value=7e-20  Score=146.21  Aligned_cols=76  Identities=13%  Similarity=0.259  Sum_probs=55.4

Q ss_pred             ecCCCeEEEEEEEcCC-CCC-eEEEEE-CCEEccCCCceeEEEeCC----EEEEEEccCCC--CCCeEEEEEEEcCCCce
Q psy12422        201 IDDGQCLDLSAVVKGD-PEP-RVSWTK-NGQPLNSSNILDLKYKNG----VASLQIQEVFP--EDEGVYVCTATNSLGTA  271 (356)
Q Consensus       201 v~~g~~~~l~C~~~g~-p~p-~i~W~~-~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~--~d~G~Y~C~a~n~~g~~  271 (356)
                      +.+|+.++|.|.+.|. |.| .+.|++ +|..+............+    .+.|.|.....  +|.|.|+|.|.|..+..
T Consensus       138 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~  217 (223)
T 1dee_B          138 SNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK  217 (223)
T ss_dssp             CCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred             cCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence            5689999999999876 777 899999 988775410000000112    24688888876  88999999999999988


Q ss_pred             EEEEE
Q psy12422        272 ETKCK  276 (356)
Q Consensus       272 ~~~~~  276 (356)
                      .....
T Consensus       218 ~~~~~  222 (223)
T 1dee_B          218 EKDVP  222 (223)
T ss_dssp             EEEEE
T ss_pred             ccccc
Confidence            77653

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.85  E-value=5e-21  Score=155.41  Aligned_cols=167  Identities=17%  Similarity=0.241  Sum_probs=112.1

Q ss_pred             CCceEEEEEeccCCCCeeEEee----------------CCEEccc----CCeeEEe-cCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK----------------GNRELSK----RDYSMSY-SDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k----------------~g~~l~~----~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      |++|+|.|.+.+.|.+.|.|||                ++.....    .++.+.. ..+.++|+|.+++.+|+|.|.|.
T Consensus        16 G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   95 (246)
T 4dzb_B           16 GTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICS   95 (246)
T ss_dssp             TSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHCEEEEEE
Confidence            7999999999999999999999                3332222    2233322 34567999999999999999999


Q ss_pred             EEeCCc----eeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEE
Q psy12422         60 ATNKHG----TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQM  135 (356)
Q Consensus        60 a~n~~g----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~  135 (356)
                      +.|..+    .......|.|.....                                                       
T Consensus        96 ~~~~~~~~~~~~~~~~~l~V~~~~~-------------------------------------------------------  120 (246)
T 4dzb_B           96 ARTSGDFGEQFFGPGTRLTVLEDLK-------------------------------------------------------  120 (246)
T ss_dssp             ECCSSGGGCCEECCCEEEEEESCGG-------------------------------------------------------
T ss_pred             EecCCCCcceEEcCCEEEEEecCCC-------------------------------------------------------
Confidence            987643    112233444432100                                                       


Q ss_pred             eeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeec-ccCCceeecCCCeEEEEEEEc
Q psy12422        136 STLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFA-NKLTDKTIDDGQCLDLSAVVK  214 (356)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~~~l~C~~~  214 (356)
                                                                        ...+|.+. ..+....+.+|+.++|.|.+.
T Consensus       121 --------------------------------------------------~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~  150 (246)
T 4dzb_B          121 --------------------------------------------------NVFPPEVAVFEPSEAEISHTQKATLVCLAT  150 (246)
T ss_dssp             --------------------------------------------------GCBCCEEEEECCCHHHHHHHSEEEEEEEEE
T ss_pred             --------------------------------------------------cccCCceEeecCCchhccCCCcEEEEEEEc
Confidence                                                              01223332 233444567799999999998


Q ss_pred             CCCCC--eEEEEECCEEccCCCceeEEE-------eCC----EEEEEEccCCCCC-CeEEEEEEEcCCCceE
Q psy12422        215 GDPEP--RVSWTKNGQPLNSSNILDLKY-------KNG----VASLQIQEVFPED-EGVYVCTATNSLGTAE  272 (356)
Q Consensus       215 g~p~p--~i~W~~~g~~~~~~~~~~~~~-------~~~----~~~L~i~~v~~~d-~G~Y~C~a~n~~g~~~  272 (356)
                      |.|++  .+.|+++|..+..........       .++    .+.|.|.....+| .|.|+|.|.|......
T Consensus       151 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          151 GFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             cCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            87665  799999999887543211100       112    1358899998888 9999999999876544

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.85  E-value=1.7e-20  Score=150.22  Aligned_cols=172  Identities=16%  Similarity=0.216  Sum_probs=108.3

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeCC--EE---c---c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKGN--RE---L---S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~g--~~---l---~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.+.|  .+.|.|||++  ..   +   .            ..++....  ..+..+|+|.+++.+|+|.|
T Consensus        15 G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y   94 (227)
T 1mju_H           15 GASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVY   94 (227)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcccCEEE
Confidence            79999999998877  6789999953  21   1   0            12333322  24567999999999999999


Q ss_pred             EEEEEeCCcee-EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEE
Q psy12422         57 KCVATNKHGTD-ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQM  135 (356)
Q Consensus        57 ~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~  135 (356)
                      .|.+.|..+.. ...+.|.|....                                                        
T Consensus        95 ~C~~~~~~~~~~~~~~~L~V~~~~--------------------------------------------------------  118 (227)
T 1mju_H           95 YCANKLGWFPYWGQGTLVTVSAAK--------------------------------------------------------  118 (227)
T ss_dssp             EEEEEETTEEEECCCEEEEECSSC--------------------------------------------------------
T ss_pred             EEEECCCCceEEcCcEEEEEcCCC--------------------------------------------------------
Confidence            99998864221 122345554210                                                        


Q ss_pred             eeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC
Q psy12422        136 STLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG  215 (356)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g  215 (356)
                                                                         ..+|.+........+.+|+.++|.|.+.|
T Consensus       119 ---------------------------------------------------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g  147 (227)
T 1mju_H          119 ---------------------------------------------------TTAPSVYPLAPVCGDTSGSSVTLGCLVKG  147 (227)
T ss_dssp             ---------------------------------------------------CBCCEEEEECCCC------CEEEEEEEEE
T ss_pred             ---------------------------------------------------CCCCEEEEecCCccccCCCcEEEEEEeec
Confidence                                                               11222222111123567999999999987


Q ss_pred             C-CCC-eEEEEECCEEccCCCceeEEEeC---CEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        216 D-PEP-RVSWTKNGQPLNSSNILDLKYKN---GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       216 ~-p~p-~i~W~~~g~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      . |.| .|.|+++|..+...........+   ..+.|.|..+..+| |.|+|.|.|..+.......+.+.
T Consensus       148 ~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~  216 (227)
T 1mju_H          148 YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR  216 (227)
T ss_dssp             EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence            5 776 89999998764211000011111   13579999999988 99999999988887777777643

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.84  E-value=8.1e-21  Score=151.91  Aligned_cols=76  Identities=18%  Similarity=0.339  Sum_probs=53.5

Q ss_pred             ecCCCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        201 IDDGQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       201 v~~g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      +.+|+.++|.|.+.|. |.| .|.|++++..+...........++    .+.|.|.++..+| |.|+|.|.|..+.....
T Consensus       140 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  218 (225)
T 1op3_H          140 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  218 (225)
T ss_dssp             CCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEEE
T ss_pred             ccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccEE
Confidence            4679999999999876 766 899999886532110000011111    2469999999889 99999999988776655


Q ss_pred             EEE
Q psy12422        275 CKL  277 (356)
Q Consensus       275 ~~l  277 (356)
                      ..+
T Consensus       219 ~~~  221 (225)
T 1op3_H          219 KKV  221 (225)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            544

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.84  E-value=9.6e-21  Score=151.02  Aligned_cols=167  Identities=17%  Similarity=0.258  Sum_probs=110.9

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeCC--EE---c-c----------------cCCeeEEe--cCCeEEEEEeeCCCCCCe
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKGN--RE---L-S----------------KRDYSMSY--SDGVVSMEIIDCKPEDSG   54 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~g--~~---l-~----------------~~~~~~~~--~~~~~~L~i~~~~~~D~G   54 (356)
                      |++|+|.|.+.+.|  .+.+.|||++  ..   + .                ..++....  ..+..+|+|.+++.+|+|
T Consensus        15 G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   94 (220)
T 1pz5_B           15 GGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRAEDTG   94 (220)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             CCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCCHHHCE
Confidence            78999999998876  6889999953  11   1 0                12333322  245679999999999999


Q ss_pred             EEEEEEEeCCcee-E--EEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCce
Q psy12422         55 EYKCVATNKHGTD-E--TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRT  131 (356)
Q Consensus        55 ~Y~C~a~n~~g~~-~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~  131 (356)
                      .|.|.+.|..+.. .  ..+.|.|....                                                    
T Consensus        95 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------------  122 (220)
T 1pz5_B           95 IYYCTRGGAVGAMDYWGQGTSVTVSSAT----------------------------------------------------  122 (220)
T ss_dssp             EEEEEEECTTSSEEEECCCEEEEECSSC----------------------------------------------------
T ss_pred             EEEEEEecCCcccceECCCEEEEEccCC----------------------------------------------------
Confidence            9999999875321 1  23444443210                                                    


Q ss_pred             EEEEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEE
Q psy12422        132 TTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSA  211 (356)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C  211 (356)
                                                                             ..+|.+...+....+.+|+.++|.|
T Consensus       123 -------------------------------------------------------~~~P~i~~~~~~~~~~~g~~v~L~C  147 (220)
T 1pz5_B          123 -------------------------------------------------------TTAPSVYPLVPGCSDTSGSSVTLGC  147 (220)
T ss_dssp             -------------------------------------------------------CBCCEEEEECCCSCCSCSSSEEEEE
T ss_pred             -------------------------------------------------------CCCCeEEEcccccccCCCCcEEEEE
Confidence                                                                   1223333222222457899999999


Q ss_pred             EEcCC-CCC-eEEEEECCEEcc--CCCceeEEEeC---CEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        212 VVKGD-PEP-RVSWTKNGQPLN--SSNILDLKYKN---GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       212 ~~~g~-p~p-~i~W~~~g~~~~--~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      .+.|. |.| .|.|++++....  ......  ..+   ..+.|.|.++..+| |.|+|.|.|..|..++++.+
T Consensus       148 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~  217 (220)
T 1pz5_B          148 LVKGYFPEPVTVKWNYGALSSGVRTVSSVL--QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKEI  217 (220)
T ss_dssp             EEEEEBSSCCEEEEGGGTCCTTEEECCCEE--ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEEeCCCeEEEEecCCcccceEEcCCcc--cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeecC
Confidence            99886 888 999999876311  000000  001   13579999999877 99999999999987776654

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.84  E-value=1.2e-20  Score=144.97  Aligned_cols=148  Identities=14%  Similarity=0.199  Sum_probs=102.2

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeC-CEEcc------------cC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKG-NRELS------------KR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~-g~~l~------------~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++|+|.|.+.+ .+.+.|.|+|+ +..+.            .. +.+.....+..+|+|.+++.+|+|.|+|.+.+.. 
T Consensus        14 G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~-   92 (180)
T 2dru_A           14 GSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHET-   92 (180)
T ss_dssp             TSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEEEESSS-
T ss_pred             CCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEEEEcCC-
Confidence            899999999844 44689999994 33221            10 0111221233479999999999999999998876 


Q ss_pred             eeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeecccccccc
Q psy12422         66 TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSS  145 (356)
Q Consensus        66 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (356)
                      .....+.|.|..+                                                                   
T Consensus        93 ~~~~~~~L~V~~~-------------------------------------------------------------------  105 (180)
T 2dru_A           93 EDQWKITMEVYEM-------------------------------------------------------------------  105 (180)
T ss_dssp             EEEEEEEEEEECC-------------------------------------------------------------------
T ss_pred             eEEEEEEEEEECC-------------------------------------------------------------------
Confidence            5566677777532                                                                   


Q ss_pred             ccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE-cCCCCCeEEEE
Q psy12422        146 TNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWT  224 (356)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~  224 (356)
                                                               ...|.+..        .+..++|.|.+ .| |.|.+.|+
T Consensus       106 -----------------------------------------~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~  135 (180)
T 2dru_A          106 -----------------------------------------VSKPMIYW--------ECSNATLTCEVLEG-TDVELKLY  135 (180)
T ss_dssp             -----------------------------------------CCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEE
T ss_pred             -----------------------------------------CCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEE
Confidence                                                     11232221        23458999999 66 99999999


Q ss_pred             ECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        225 KNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       225 ~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      +++..+..       ...  .+|.+..  .+|+|.|+|.|.|..+.......+
T Consensus       136 ~~~~~l~~-------~~~--~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          136 QGKEHLRS-------LRQ--KTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             ETTEEEEE-------ESS--SEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             ECCeECcC-------CCC--CEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence            99988751       111  2566633  789999999999999987766544

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.84  E-value=1.6e-20  Score=150.57  Aligned_cols=79  Identities=16%  Similarity=0.313  Sum_probs=54.8

Q ss_pred             eecCCCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCceeEEEeC---CEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        200 TIDDGQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNILDLKYKN---GVASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      .+.+|+.++|.|.+.|. |.| .|.|++++..+...........+   ..+.|.|..+..+| |.|+|.|.|..+.....
T Consensus       141 ~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          141 GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             ---CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            35789999999999875 877 89999988654211111111111   13469999998866 99999999999988777


Q ss_pred             EEEec
Q psy12422        275 CKLTP  279 (356)
Q Consensus       275 ~~l~p  279 (356)
                      ..+.|
T Consensus       220 ~~~~~  224 (228)
T 3bae_H          220 KKIVP  224 (228)
T ss_dssp             EECCC
T ss_pred             EEccc
Confidence            66643

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.84  E-value=1.1e-21  Score=167.24  Aligned_cols=225  Identities=13%  Similarity=0.102  Sum_probs=136.2

Q ss_pred             cccccccCccceeeeccc---------CCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceee
Q psy12422         88 AHNFLYSGDRKYIEKHIR---------PAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITR  158 (356)
Q Consensus        88 ~~~~~~~g~~~~l~c~~~---------p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ....+.+|+.+.|.|.+.         |.+.+.|++++.........  ..+...    ..+.   +........+.+.|
T Consensus        26 ~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~~~----~~~~---L~i~~v~~~D~G~Y   96 (339)
T 3o4o_C           26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE--ETRMWA----QDGA---LWLLPALQEDSGTY   96 (339)
T ss_dssp             CCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCS--SSCEEE----ETTE---EEESSBCTTCCEEE
T ss_pred             eEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccc--cccEEe----eCCe---EEECCCCcccCEEE
Confidence            345678999999999984         56679999987663221110  001000    0000   11112222333333


Q ss_pred             eeeccccCCCCCcccccceeeecCCCCCCCCCee--cccCCceeecCCCeEEEEEE-----EcCCCCCeEEEEECCEEcc
Q psy12422        159 RMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQF--ANKLTDKTIDDGQCLDLSAV-----VKGDPEPRVSWTKNGQPLN  231 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~v~~g~~~~l~C~-----~~g~p~p~i~W~~~g~~~~  231 (356)
                      .|......    ........+.+     ..++..  ........+.+|+.+.|.|.     +.|.|.+.+.|+++|..+.
T Consensus        97 ~C~~~n~~----g~~~~~~~l~V-----~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~  167 (339)
T 3o4o_C           97 VCTTRNAS----YCDKMSIELRV-----FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLD  167 (339)
T ss_dssp             ECCEEETT----EEEEEEEEEEE-----ECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCC
T ss_pred             EEEEECCc----ceEEEEEEEEE-----EcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCC
Confidence            33332211    11222333433     122221  11223357889999999999     8889999999999999887


Q ss_pred             CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc----eEEEEEEecC-----CCCc------------------
Q psy12422        232 SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT----AETKCKLTPL-----NSSN------------------  284 (356)
Q Consensus       232 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~p~-----~~~~------------------  284 (356)
                      ..... +....+...|.|.+++.+|+|.|+|.|.|..|.    ....+.|...     .+|.                  
T Consensus       168 ~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L  246 (339)
T 3o4o_C          168 KDNEK-FLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTI  246 (339)
T ss_dssp             TTCSS-EEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCC
T ss_pred             CCCce-eEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEE
Confidence            65322 222233348999999999999999999999873    3334444311     0111                  


Q ss_pred             ------------cceeEEeCCe-----------------------------EEEEEecCCCCCC-eEEEEEEEcCCcceE
Q psy12422        285 ------------ILDLKYKNGV-----------------------------ASLQIQEVFPEDE-GVYVCTATNSLGTAE  322 (356)
Q Consensus       285 ------------~~~~~~~~~~-----------------------------~~L~i~~v~~~d~-G~Y~C~a~n~~g~~~  322 (356)
                                  ...+.|..+.                             +.|.|.+++.+|+ |.|+|.|.|..|..+
T Consensus       247 ~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~  326 (339)
T 3o4o_C          247 PCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQT  326 (339)
T ss_dssp             CCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEEC
T ss_pred             EEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceE
Confidence                        0134444311                             1799999999997 999999999999999


Q ss_pred             EEEEEEEEe
Q psy12422        323 TKCKLTVRS  331 (356)
Q Consensus       323 ~~~~l~V~~  331 (356)
                      +.+.|.+..
T Consensus       327 ~~~~~~~~~  335 (339)
T 3o4o_C          327 LRTTVKEHH  335 (339)
T ss_dssp             CBCCCCC--
T ss_pred             EEEEhhHhc
Confidence            888776543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.84  E-value=3e-20  Score=147.99  Aligned_cols=164  Identities=14%  Similarity=0.226  Sum_probs=108.6

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeCC--EE---cc---------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKGN--RE---LS---------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~g--~~---l~---------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.+.|  .+.+.|||+.  ..   +.               ..++....  ..+..+|+|.+++.+|+|.|
T Consensus        15 G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y   94 (220)
T 2fbj_H           15 GGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALY   94 (220)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEE
T ss_pred             CCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChhhCEEE
Confidence            79999999998876  5789999942  11   10               12333332  24567999999999999999


Q ss_pred             EEEEEeCCcee---EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEE
Q psy12422         57 KCVATNKHGTD---ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTT  133 (356)
Q Consensus        57 ~C~a~n~~g~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~  133 (356)
                      .|.+.+..+..   ...+.|.|...+                                                      
T Consensus        95 ~C~~~~~~~~~~~~~~~~~L~V~~~~------------------------------------------------------  120 (220)
T 2fbj_H           95 YCARLHYYGYNAYWGQGTLVTVSAES------------------------------------------------------  120 (220)
T ss_dssp             EEEEEETTTEEEEECCCEEEEECSSC------------------------------------------------------
T ss_pred             EEEEeccccccceecCCEEEEecCCC------------------------------------------------------
Confidence            99999875431   122344443210                                                      


Q ss_pred             EEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE
Q psy12422        134 QMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV  213 (356)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~  213 (356)
                                                                           ..+|.+...+ ...+.+|+.++|.|.+
T Consensus       121 -----------------------------------------------------~~~P~v~~~~-~~~~~~g~~v~L~C~~  146 (220)
T 2fbj_H          121 -----------------------------------------------------ARNPTIYPLT-LPPALSSDPVIIGCLI  146 (220)
T ss_dssp             -----------------------------------------------------CBCCEEEEEC-CCSSSCCSSEEEEEEE
T ss_pred             -----------------------------------------------------CCCCEEEEee-cccccCCCcEEEEEEE
Confidence                                                                 1223333222 2235689999999999


Q ss_pred             cCC-CC--CeEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        214 KGD-PE--PRVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       214 ~g~-p~--p~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      .+. |.  +.|.|++++..+...........++    .+.|.|.....+|.|.|+|.|.|..+..+
T Consensus       147 ~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          147 HDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            876 76  6899999987652100000001111    13699999999999999999999998765

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.84  E-value=6.3e-20  Score=145.70  Aligned_cols=147  Identities=20%  Similarity=0.291  Sum_probs=116.4

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC--CceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS--NILDLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ..+|.+ ..+.++.+.+|+.+.|.|.+.|.|.|.|.|+++|..+...  .++.+........|.|.+++.+|+|.|+|.|
T Consensus        17 ~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           17 MYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             CEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred             ecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence            456777 4566688999999999999999999999999999999866  3455555566789999999999999999999


Q ss_pred             EcCCCceEEEEEEecCCCCcc---c---------------------------eeEEeC-----------------CeEEE
Q psy12422        265 TNSLGTAETKCKLTPLNSSNI---L---------------------------DLKYKN-----------------GVASL  297 (356)
Q Consensus       265 ~n~~g~~~~~~~l~p~~~~~~---~---------------------------~~~~~~-----------------~~~~L  297 (356)
                      .|..|.....+.+.....|..   .                           .+.|..                 ....|
T Consensus        96 ~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l  175 (215)
T 3mtr_A           96 VNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIV  175 (215)
T ss_dssp             ECSSCEEEEEEEEEECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEE
T ss_pred             EECCCceEEEEEEEECCCCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccE
Confidence            999999888777763221111   0                           122221                 01579


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422        298 QIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       298 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  334 (356)
                      .|.++...|.|.|+|.|.|..|....+..+.|+.+|.
T Consensus       176 ~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p~  212 (215)
T 3mtr_A          176 TIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV  212 (215)
T ss_dssp             EEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC-
T ss_pred             EECCCCCCCEEEEEEEEEeCCcccCcccceeeEeccc
Confidence            9999999999999999999999988887777777663

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.84  E-value=5.8e-20  Score=141.91  Aligned_cols=140  Identities=20%  Similarity=0.331  Sum_probs=103.4

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCC--EEEEEEccCCCCCCeEEEEEEEc
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG--VASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      +|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.............  ...|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            3556667778899999999999999999999999999999998776555544443  46899999999999999999999


Q ss_pred             CCCceE-EEEEEecCCCCcc---------------------------ceeEEeC----------CeEEEEEecCCCCCCe
Q psy12422        267 SLGTAE-TKCKLTPLNSSNI---------------------------LDLKYKN----------GVASLQIQEVFPEDEG  308 (356)
Q Consensus       267 ~~g~~~-~~~~l~p~~~~~~---------------------------~~~~~~~----------~~~~L~i~~v~~~d~G  308 (356)
                      ..|... ..+.|.+..+|.+                           ..+.|..          ....|.|.++  +|+|
T Consensus        82 ~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~--~d~G  159 (182)
T 1rhf_A           82 GGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--TQST  159 (182)
T ss_dssp             CTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCC--SSCE
T ss_pred             CCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCCCceEEEEecc--ccCe
Confidence            877532 2333331111111                           0345543          3568999988  5999


Q ss_pred             EEEEEEEcCCcceEE-EEEEEEE
Q psy12422        309 VYVCTATNSLGTAET-KCKLTVR  330 (356)
Q Consensus       309 ~Y~C~a~n~~g~~~~-~~~l~V~  330 (356)
                      .|+|.|.|..|...+ .+.|.|+
T Consensus       160 ~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          160 MFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEEECCCCCcccceEEEEeC
Confidence            999999999998865 8888874

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.84  E-value=5.2e-20  Score=153.03  Aligned_cols=79  Identities=16%  Similarity=0.211  Sum_probs=58.7

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCC------eEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEE
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEP------RVSWTKN--GQPLN------------SSNILDLKYKNGVASLQI  249 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p------~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i  249 (356)
                      +.+...+....+.+|++++|.|.+.+.|.+      .+.|+|+  |..+.            ...++.........+|+|
T Consensus       160 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I  239 (291)
T 2gki_A          160 LVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTI  239 (291)
T ss_dssp             CCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEE
Confidence            334444556789999999999999988876      8999995  22111            023444444556678999


Q ss_pred             ccCCCCCCeEEEEEEEcCC
Q psy12422        250 QEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       250 ~~v~~~d~G~Y~C~a~n~~  268 (356)
                      .+++.+|+|.|.|.|.|..
T Consensus       240 ~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          240 SSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             SSCCGGGCEEEEEEEEETT
T ss_pred             CCCCHHHCEEEEEEEccCC
Confidence            9999999999999999854

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.84  E-value=4.2e-21  Score=152.71  Aligned_cols=66  Identities=18%  Similarity=0.203  Sum_probs=50.1

Q ss_pred             CCceEEEEEeccC---CC-CeeEEeeCCEEcccCCee--EEecCC----eEEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          1 MQNVIKVKVGSTK---PP-PTVKWYKGNRELSKRDYS--MSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~~~g~---p~-~~v~W~k~g~~l~~~~~~--~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      |++++|.|.+.|.   |+ +.|+|||+|..+......  ....++    ...|+|.+++.+|+|.|+|.|.|..+.
T Consensus        26 G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~  101 (218)
T 2rgs_A           26 SLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLP  101 (218)
T ss_dssp             TSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCS
T ss_pred             CCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCC
Confidence            7899999999877   44 789999999887543211  112222    247999999999999999999998654

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.84  E-value=5.3e-20  Score=150.74  Aligned_cols=175  Identities=16%  Similarity=0.203  Sum_probs=109.6

Q ss_pred             CCceEEEEEeccCC------CCeeEEeeC--CEEcc-------------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVGSTKP------PPTVKWYKG--NRELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~~g~p------~~~v~W~k~--g~~l~-------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      |++|+|.|.+.+.|      .+.+.|||+  |..+.             ..++.....++..+|+|.+++.+|+|.|.|.
T Consensus        20 G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   99 (264)
T 2gjj_A           20 GEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQ   99 (264)
T ss_dssp             TCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHCEEEEEE
Confidence            78999999998887      678999994  32211             2344444455667999999999999999999


Q ss_pred             EEeCCcee-EEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeec
Q psy12422         60 ATNKHGTD-ETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTL  138 (356)
Q Consensus        60 a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (356)
                      +.|..+.. ...+.|.|...+....           +.                      .                   
T Consensus       100 ~~~~~~~~~~~~~~L~V~~~~~~~~-----------~~----------------------~-------------------  127 (264)
T 2gjj_A          100 QYSNYPWTFGGGTRLEIKRGGGGSG-----------GG----------------------G-------------------  127 (264)
T ss_dssp             ECSSSSCEECCCEEEEEECC------------------------------------------------------------
T ss_pred             EecCCccEecCCEEEEEEcCCcccc-----------cc----------------------c-------------------
Confidence            98875432 2334566654311000           00                      0                   


Q ss_pred             cccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCC
Q psy12422        139 SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE  218 (356)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~  218 (356)
                                                     .+.  ..  ...    ....+.+.. +....+.+|++++|.|.+.+.|.
T Consensus       128 -------------------------------~~~--~~--~~~----~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~  167 (264)
T 2gjj_A          128 -------------------------------SGG--GG--SGG----GGSEVQLQQ-SGPEVVKTGASVKISCKASGYSF  167 (264)
T ss_dssp             --------------------------------------------------CCEEEE-CCCEEECTTCCEEEEEEEESSCG
T ss_pred             -------------------------------ccc--cc--ccc----ccCcEEEeC-CCCEEEcCCCcEEEEEEEeCCcc
Confidence                                           000  00  000    001111212 22346889999999999998874


Q ss_pred             --CeEEEEECC--EE---cc----C----------CCceeEEE--eCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        219 --PRVSWTKNG--QP---LN----S----------SNILDLKY--KNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       219 --p~i~W~~~g--~~---~~----~----------~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                        +.+.|+++.  ..   +.    .          ..++.+..  .....+|.|.+++.+|+|.|.|.|.|.
T Consensus       168 ~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          168 TGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             GGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence              789999953  21   10    0          12333332  234679999999999999999999995

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.84  E-value=8.3e-21  Score=149.76  Aligned_cols=163  Identities=16%  Similarity=0.188  Sum_probs=104.3

Q ss_pred             CCceEEEEEeccCC---C-CeeEEeeCCEEcccCCe--eEEecCC----eEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGSTKP---P-PTVKWYKGNRELSKRDY--SMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~p---~-~~v~W~k~g~~l~~~~~--~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |++++|.|.+.|.|   . +.|+|||++..+.....  .....++    ...|+|.+++.+|+|.|+|.|.|..+.....
T Consensus        18 G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   97 (207)
T 2vol_A           18 TLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIE   97 (207)
T ss_dssp             TSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSSCEE
T ss_pred             CCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCCceE
Confidence            79999999998874   2 48999999987753211  0112222    2479999999999999999999987643211


Q ss_pred             EEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccC
Q psy12422         71 CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNAT  150 (356)
Q Consensus        71 ~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      ..+.+..                                                                         
T Consensus        98 ~~v~~~~-------------------------------------------------------------------------  104 (207)
T 2vol_A           98 KTISKTK-------------------------------------------------------------------------  104 (207)
T ss_dssp             EEECCCC-------------------------------------------------------------------------
T ss_pred             EEeccCC-------------------------------------------------------------------------
Confidence            1111000                                                                         


Q ss_pred             CCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCC-CC-CeEEEEECCE
Q psy12422        151 SPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PE-PRVSWTKNGQ  228 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~  228 (356)
                                                        ....+|.+...+......+|+.+.|.|.+.|. |+ +.|.|++||.
T Consensus       105 ----------------------------------~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~  150 (207)
T 2vol_A          105 ----------------------------------GRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQ  150 (207)
T ss_dssp             ----------------------------------CCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             ----------------------------------CCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCE
Confidence                                              00223433322222123368999999999884 54 3899999999


Q ss_pred             EccCCCceeEE-EeCC----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        229 PLNSSNILDLK-YKNG----VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       229 ~~~~~~~~~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      .+......... ..++    .+.|.|.....+|.|.|+|.|.|....
T Consensus       151 ~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          151 PAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             ECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             eccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            87543211111 1122    134677777777899999999998764

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.84  E-value=4e-22  Score=160.54  Aligned_cols=162  Identities=15%  Similarity=0.167  Sum_probs=91.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--EEc-----------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--REL-----------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~~l-----------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |++|+|.|.+.+.|.+.|.|||++  ..+           .  ..++.....++..+|+|.+++.+|+|.|.|.+.|..+
T Consensus        38 G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  117 (233)
T 3bqu_C           38 GEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCLQSDNLP  117 (233)
T ss_dssp             ---CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEEEECSSSS
T ss_pred             CCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEEEEecCCc
Confidence            789999999998888899999953  211           0  1122222233455899999999999999999988654


Q ss_pred             eeE-EEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccc
Q psy12422         66 TDE-TNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSS  144 (356)
Q Consensus        66 ~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (356)
                      ... ....|.|...                                                                  
T Consensus       118 ~~~~~~~~l~V~~~------------------------------------------------------------------  131 (233)
T 3bqu_C          118 YTFGGGTNLEIKRA------------------------------------------------------------------  131 (233)
T ss_dssp             CCBCCCCBC---CC------------------------------------------------------------------
T ss_pred             eeecCCEEEEEeCC------------------------------------------------------------------
Confidence            211 1111222110                                                                  


Q ss_pred             cccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCC-CCC-eEE
Q psy12422        145 STNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PEP-RVS  222 (356)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~p-~i~  222 (356)
                                                                ..+|.+...+....+.+|+.++|.|.+.|. |++ .+.
T Consensus       132 ------------------------------------------~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  169 (233)
T 3bqu_C          132 ------------------------------------------DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVK  169 (233)
T ss_dssp             ------------------------------------------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEE
T ss_pred             ------------------------------------------CCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEE
Confidence                                                      123444432222233469999999999885 443 699


Q ss_pred             EEECCEEccCC-Ccee-EEE-eC----CEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        223 WTKNGQPLNSS-NILD-LKY-KN----GVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       223 W~~~g~~~~~~-~~~~-~~~-~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      |+++|..+... .... ... .+    ..+.|.|..+..+|+|.|+|.|.|....
T Consensus       170 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          170 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             EEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            99999887654 1110 000 11    1247999999999999999999998654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.84  E-value=3.9e-20  Score=144.78  Aligned_cols=127  Identities=16%  Similarity=0.145  Sum_probs=94.5

Q ss_pred             ceeecCCCeEEEEEE---EcCCCCCeEEEEECCEEccC-----------------CCceeEEEeCCEEEEEEccCCCCCC
Q psy12422        198 DKTIDDGQCLDLSAV---VKGDPEPRVSWTKNGQPLNS-----------------SNILDLKYKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~---~~g~p~p~i~W~~~g~~~~~-----------------~~~~~~~~~~~~~~L~i~~v~~~d~  257 (356)
                      .+++..|++++|.|.   +.+.|.|.|+|+|+|..+..                 ...+......+...|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            457889999999996   46789999999997643211                 1223344556678999999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEecCCCCccc--------------------------eeEEeC------------------C
Q psy12422        258 GVYVCTATNSLGTAETKCKLTPLNSSNIL--------------------------DLKYKN------------------G  293 (356)
Q Consensus       258 G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~--------------------------~~~~~~------------------~  293 (356)
                      |.|+|.|.|..|.....+.|.+..++.+.                          .+.|..                  .
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~  161 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK  161 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECT
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeC
Confidence            99999999999988887777632221111                          445532                  1


Q ss_pred             e---EEEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy12422        294 V---ASLQIQEVFPEDEGVYVCTATNSLGTAETK  324 (356)
Q Consensus       294 ~---~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  324 (356)
                      +   ..|.|.++..+|+|.|+|.|+|..|+++..
T Consensus       162 ~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          162 DGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             TSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            1   335567899999999999999999998864

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.83  E-value=2.4e-20  Score=170.45  Aligned_cols=76  Identities=21%  Similarity=0.375  Sum_probs=58.9

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEccc------------CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSK------------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      |++|+|.|.+ .+.|.+.|+|||++..+..            ..+.....++  +|.|.+++.+|+|.|+|.+.|..|..
T Consensus       381 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~L~i~~v~~~D~G~Y~C~~~n~~~~~  458 (581)
T 3o3u_N          381 GEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG--SLFLPAVGIQDEGIFRCQAMNRNGKE  458 (581)
T ss_dssp             TSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS--CEEESSCCGGGCEEEEEEEECTTSCE
T ss_pred             CCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc--eEEEeccccccCeEEEEEEEcCCCce
Confidence            7899999999 8899999999998753211            1111223334  79999999999999999999998887


Q ss_pred             -EEEEEEEEecc
Q psy12422         68 -ETNCVVIVESE   78 (356)
Q Consensus        68 -~~~~~l~v~~~   78 (356)
                       ...+.|.|..+
T Consensus       459 ~~~~~~l~V~~~  470 (581)
T 3o3u_N          459 TKSNYRVRVYQI  470 (581)
T ss_dssp             EEEEEEEEEEBC
T ss_pred             eEEEEEEEEEcC
Confidence             66778877643

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.83  E-value=1.4e-20  Score=147.92  Aligned_cols=140  Identities=16%  Similarity=0.218  Sum_probs=103.8

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ...|.+...+....+.+|+++.|.|.+.+.|.+. +.|+++|..+....          ..|.|.+++.+|+|.|+|.|.
T Consensus         5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~   74 (204)
T 3sgj_C            5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQ   74 (204)
T ss_dssp             -CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEET
T ss_pred             CCCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeC
Confidence            4557777777778899999999999999998876 99999999876542          389999999999999999999


Q ss_pred             cCCCceEEEEEEecC----CCCc--------------------cceeEEeC---------CeEEEEEecCCCCCCeEEEE
Q psy12422        266 NSLGTAETKCKLTPL----NSSN--------------------ILDLKYKN---------GVASLQIQEVFPEDEGVYVC  312 (356)
Q Consensus       266 n~~g~~~~~~~l~p~----~~~~--------------------~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C  312 (356)
                      |........+.+...    ..+.                    ...+.|.+         ....|.|.+++.+|+|.|+|
T Consensus        75 n~~~s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D~G~Y~C  154 (204)
T 3sgj_C           75 LSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFC  154 (204)
T ss_dssp             TSBCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEE
T ss_pred             CCcccccEEEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCcccCEEEEE
Confidence            976665555555410    0000                    01344543         34679999999999999999


Q ss_pred             EEEc-CCcceEEEEEEEEEecCCCC
Q psy12422        313 TATN-SLGTAETKCKLTVRSTPAAN  336 (356)
Q Consensus       313 ~a~n-~~g~~~~~~~l~V~~~p~~~  336 (356)
                      .|.| ..+..+..+.|.|+++|..+
T Consensus       155 ~a~n~~~~~~s~~~~l~V~~~~~~P  179 (204)
T 3sgj_C          155 RGLVGSKNVSSETVQITITQGLAVS  179 (204)
T ss_dssp             EEEETTEEEECCCEEEEEEC-----
T ss_pred             EEEeCCCceecCcEEEEEeCcCCCC
Confidence            9999 44455668899999877543

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.83  E-value=2.4e-19  Score=139.57  Aligned_cols=142  Identities=21%  Similarity=0.309  Sum_probs=105.7

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCC-CCeEEEEE-CCEEccC-CCceeEE-EeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTK-NGQPLNS-SNILDLK-YKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~-~g~~~~~-~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      |+.+...+.+..+.+|+++.|.|.+.+.| .+.+.|++ +|..+.. ..++... .......|.|.+++.+|+|.|+|.|
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            45566677788999999999999999887 78899999 8887763 3333332 2356789999999999999999999


Q ss_pred             EcCCC-ceEEEEEEecCCCCccc--------------------------eeEEeC----------------CeEEEEEec
Q psy12422        265 TNSLG-TAETKCKLTPLNSSNIL--------------------------DLKYKN----------------GVASLQIQE  301 (356)
Q Consensus       265 ~n~~g-~~~~~~~l~p~~~~~~~--------------------------~~~~~~----------------~~~~L~i~~  301 (356)
                      .|..+ .....+.+....++.+.                          .+.|..                .++.|.|.+
T Consensus        82 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~  161 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG  161 (191)
T ss_dssp             EETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETT
T ss_pred             EcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECC
Confidence            99984 45555555422111110                          445532                223799999


Q ss_pred             CCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy12422        302 VFPEDEGVYVCTATNSLGTAETKCKLTVR  330 (356)
Q Consensus       302 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  330 (356)
                      ++.+|+|.|+|.|.|..|.......+.|.
T Consensus       162 ~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~  190 (191)
T 1epf_A          162 IKKTDEGTYRCEGRILARGEINFKDIQVI  190 (191)
T ss_dssp             CCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             CChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence            99999999999999999877776666664

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.83  E-value=2.7e-20  Score=129.59  Aligned_cols=95  Identities=34%  Similarity=0.544  Sum_probs=87.2

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..||.|...+.++.+.+|+++.|.|.+.|+|.|.|.|+|||..+....++.+..++...+|.|.+++.+|+|.|+|.|.|
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   90 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN   90 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence            45788888889999999999999999999999999999999999988888888888888999999999999999999999


Q ss_pred             CCCceEEEEEEecCC
Q psy12422        267 SLGTAETKCKLTPLN  281 (356)
Q Consensus       267 ~~g~~~~~~~l~p~~  281 (356)
                      ..|....++.|.+..
T Consensus        91 ~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           91 AAGEAYAAAAVTVLE  105 (107)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEEc
Confidence            999999988887544

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.83  E-value=6.8e-20  Score=142.37  Aligned_cols=142  Identities=22%  Similarity=0.360  Sum_probs=101.4

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      +|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.......+.... ...|.|.+++.+|+|.|+|.+.|..
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-NNNLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT-TSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec-CCCEEEeeCCHhHCcEEEEEEEEcC
Confidence            567777778889999999999999999999999999998877643222222221 1369999999999999999999998


Q ss_pred             CceEE--EEEEe----cC--CCC---ccc-------------------eeEEeC---------------CeEEEEEecCC
Q psy12422        269 GTAET--KCKLT----PL--NSS---NIL-------------------DLKYKN---------------GVASLQIQEVF  303 (356)
Q Consensus       269 g~~~~--~~~l~----p~--~~~---~~~-------------------~~~~~~---------------~~~~L~i~~v~  303 (356)
                      +....  .+.+.    |.  ..+   ...                   .+.|..               ....|.|.+++
T Consensus        81 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~  160 (189)
T 2v5t_A           81 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII  160 (189)
T ss_dssp             TTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCC
T ss_pred             CCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCC
Confidence            65432  22222    11  000   000                   344432               24579999999


Q ss_pred             CCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        304 PEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       304 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                      .+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       161 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          161 NSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            9999999999999999999999998864

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.83  E-value=3.9e-19  Score=137.86  Aligned_cols=73  Identities=12%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             CCceEEEEEeccCCCC--eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+ |.|.|  .|+|++.+..+  .+  .....+...|.|.+++.+|+|.|.|.|.|..+.....+.|.|..+
T Consensus        22 G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~   96 (210)
T 1gsm_A           22 GASRQLTCRL-ACADRGASVQWRGLDTSL--GA--VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAF   96 (210)
T ss_dssp             TCCEEEEEEE-CCSSTTCEEEEESSTTTT--CC--EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             CCCEEEEEEC-CCCCCCcceEEeeccccc--Cc--EEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEec
Confidence            7899999999 88888  99999965544  22  222345568999999999999999999999988888888888754

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.82  E-value=3.8e-19  Score=142.79  Aligned_cols=79  Identities=14%  Similarity=0.262  Sum_probs=54.2

Q ss_pred             ecCC-CeEEEEEEEcCC-CCC-eEEEEE-CCEEccCCCceeEEEeCC----EEEEEEccCCC--CCCeEEEEEEEcCCCc
Q psy12422        201 IDDG-QCLDLSAVVKGD-PEP-RVSWTK-NGQPLNSSNILDLKYKNG----VASLQIQEVFP--EDEGVYVCTATNSLGT  270 (356)
Q Consensus       201 v~~g-~~~~l~C~~~g~-p~p-~i~W~~-~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~--~d~G~Y~C~a~n~~g~  270 (356)
                      +.+| +.++|.|.+.|. |.| .+.|++ ||..+............+    .+.|.|.....  +|.|.|+|.|.|..+.
T Consensus       137 ~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~  216 (232)
T 1dn0_B          137 SPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN  216 (232)
T ss_dssp             ----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             cCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCC
Confidence            4578 899999999875 776 899999 998775410000000112    24689999887  8899999999999998


Q ss_pred             eEEEEEEec
Q psy12422        271 AETKCKLTP  279 (356)
Q Consensus       271 ~~~~~~l~p  279 (356)
                      ......+.+
T Consensus       217 ~~~~~~i~~  225 (232)
T 1dn0_B          217 KEKNVPLPV  225 (232)
T ss_dssp             EEEEEECCC
T ss_pred             cceeEecCC
Confidence            877776653

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.82  E-value=1.5e-19  Score=148.48  Aligned_cols=77  Identities=18%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             CCceEEEEEeccCC-----CCeeEEeeC--CEE---cc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKP-----PPTVKWYKG--NRE---LS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p-----~~~v~W~k~--g~~---l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|.+.+.|     .+.+.|||+  |..   +.          ..++.....++..+|+|.+++.+|+|.|.|.+
T Consensus        30 G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~  109 (268)
T 1x9q_A           30 GDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQ  109 (268)
T ss_dssp             TCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHCEEEEEEE
Confidence            78999999998887     478999995  221   10          23444444556679999999999999999999


Q ss_pred             EeCCcee-EEEEEEEEec
Q psy12422         61 TNKHGTD-ETNCVVIVES   77 (356)
Q Consensus        61 ~n~~g~~-~~~~~l~v~~   77 (356)
                      .|..+.. .....|.|..
T Consensus       110 ~~~~~~~~~~~~~L~V~~  127 (268)
T 1x9q_A          110 STHVPWTFGGGTKLEIKS  127 (268)
T ss_dssp             CSSSSCEECCCEEEC---
T ss_pred             ecCCCceEcCCEEEEEcc
Confidence            9875432 2234555543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.82  E-value=2.8e-19  Score=141.57  Aligned_cols=131  Identities=20%  Similarity=0.305  Sum_probs=106.5

Q ss_pred             cCCCeEEEEEEEcCC-CCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        202 DDGQCLDLSAVVKGD-PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~-p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      -.++.+.|.|.+.++ |.+.+.|+++|..+....++.+...++...|.|.+++.+|+|.|+|.|.|..|.....+.+...
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            367888999999885 5788999999999998888887778887889999999999999999999999888777776311


Q ss_pred             C--------------------C-------Cc-cc-------------------eeEEeC------------------CeE
Q psy12422        281 N--------------------S-------SN-IL-------------------DLKYKN------------------GVA  295 (356)
Q Consensus       281 ~--------------------~-------~~-~~-------------------~~~~~~------------------~~~  295 (356)
                      .                    .       +. +.                   .+.|.+                  ...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~  174 (212)
T 2r15_A           95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA  174 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEE
T ss_pred             eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEE
Confidence            0                    0       00 00                   344432                  234


Q ss_pred             EEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy12422        296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST  332 (356)
Q Consensus       296 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  332 (356)
                      .|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..|
T Consensus       175 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          175 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            8999999999999999999999999999999999865

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.82  E-value=4.7e-20  Score=141.62  Aligned_cols=139  Identities=20%  Similarity=0.230  Sum_probs=104.8

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+...          ...|.|.+++.+|+|.|+|.+.
T Consensus         2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~   71 (176)
T 1f2q_A            2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQ   71 (176)
T ss_dssp             --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECT
T ss_pred             CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcC
Confidence            356777777877889999999999999998876 59999999887642          2389999999999999999999


Q ss_pred             cCCCceEEEEEEecCC-----CCc-------------------cceeEEeC---------CeEEEEEecCCCCCCeEEEE
Q psy12422        266 NSLGTAETKCKLTPLN-----SSN-------------------ILDLKYKN---------GVASLQIQEVFPEDEGVYVC  312 (356)
Q Consensus       266 n~~g~~~~~~~l~p~~-----~~~-------------------~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C  312 (356)
                      |..+.....+.+.+..     ...                   ...+.|.+         ....|.|.+++.+|+|.|+|
T Consensus        72 ~~~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C  151 (176)
T 1f2q_A           72 QVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYC  151 (176)
T ss_dssp             TSSCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEE
T ss_pred             CccccccEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcccCEEEEE
Confidence            9887766666654110     000                   01445543         35689999999999999999


Q ss_pred             EEEcCCcc-eEEEEEEEEEecCCC
Q psy12422        313 TATNSLGT-AETKCKLTVRSTPAA  335 (356)
Q Consensus       313 ~a~n~~g~-~~~~~~l~V~~~p~~  335 (356)
                      .|.|..+. .+..+.|.|.++|..
T Consensus       152 ~a~n~~~~~~s~~~~l~V~~~p~~  175 (176)
T 1f2q_A          152 TGKVWQLDYESEPLNITVIKAPRE  175 (176)
T ss_dssp             EEEETTEEEECCCEEEEEECSCC-
T ss_pred             EEEeCCcceEecCEEEEEecCCCC
Confidence            99997554 445789999999864

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.82  E-value=3.3e-19  Score=151.03  Aligned_cols=231  Identities=12%  Similarity=0.078  Sum_probs=120.0

Q ss_pred             ccccccCccceeeeccc---CCceeeecccccccCCccccC---CCCceEEEEeec--cccccccccccCCCccceeeee
Q psy12422         89 HNFLYSGDRKYIEKHIR---PAPAIITTRQEIKSSYSSHTD---DTGRTTTQMSTL--SSNYSSSTNNATSPSKKITRRM  160 (356)
Q Consensus        89 ~~~~~~g~~~~l~c~~~---p~p~i~w~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  160 (356)
                      ...+.+|+.+.|.|.+.   |.+.+.|++++..........   ...+........  ......+........+.+.|.|
T Consensus        12 ~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   91 (327)
T 2wng_A           12 SVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYC   91 (327)
T ss_dssp             EEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEE
T ss_pred             ceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEE
Confidence            44678999999999987   556799999765422100000   000100000000  0011111222233334444444


Q ss_pred             eccccCCCCC-cccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCCCC--eEEEEECCEEccCCCcee
Q psy12422        161 NSILDTDSPS-RSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP--RVSWTKNGQPLNSSNILD  237 (356)
Q Consensus       161 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~~~~  237 (356)
                      ......+... ........+.+..  ...+|.+. .+ ...+.+|+.+.|.|.+.|.|+|  .+.|+++|..+.......
T Consensus        92 ~a~n~~~~~~~~~~~~~~~l~V~~--~p~~p~i~-~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~  167 (327)
T 2wng_A           92 VKFRKGSPDTEFKSGAGTELSVRA--KPSAPVVS-GP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNV  167 (327)
T ss_dssp             EEEESSTTCEEEEECCCEEEEEEB--CCCCCEEE-CC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEE
T ss_pred             EeecCCCcceeEeecCcEEEEEEe--cCCCceee-cc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccccccc
Confidence            4333211100 0111222333311  12334443 22 3568899999999999988876  899999999987543211


Q ss_pred             EEE-eCC----EEEEEEccCCCCCCeEEEEEEEcCCCce---EEEEEEe--cCCCC------------------------
Q psy12422        238 LKY-KNG----VASLQIQEVFPEDEGVYVCTATNSLGTA---ETKCKLT--PLNSS------------------------  283 (356)
Q Consensus       238 ~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~---~~~~~l~--p~~~~------------------------  283 (356)
                      ... ..+    .+.|.|.....+|.|.|+|.|.|..+..   ..+..+.  ...+|                        
T Consensus       168 ~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C~~~g~  247 (327)
T 2wng_A          168 DPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKF  247 (327)
T ss_dssp             ECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred             ccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCCcCCCCcEEEEEEEccc
Confidence            111 111    2368888788778999999999988763   3333332  00001                        


Q ss_pred             --ccceeEEeCC----------------------eEEEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy12422        284 --NILDLKYKNG----------------------VASLQIQEVFPEDEGVYVCTATNSLGTAET  323 (356)
Q Consensus       284 --~~~~~~~~~~----------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  323 (356)
                        ....+.|.++                      .+.|.|..+..+|+|.|+|.|.|..|....
T Consensus       248 ~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s  311 (327)
T 2wng_A          248 YPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVS  311 (327)
T ss_dssp             BSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEE
T ss_pred             cCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCch
Confidence              0002444321                      145888889999999999999999987644

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.82  E-value=4.1e-20  Score=146.41  Aligned_cols=153  Identities=27%  Similarity=0.466  Sum_probs=105.4

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCc----eeEEEeCC-E--EEEEEccCCCCCCeE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI----LDLKYKNG-V--ASLQIQEVFPEDEGV  259 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~----~~~~~~~~-~--~~L~i~~v~~~d~G~  259 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.++|.+.+.|+++|..+.....    .......+ .  ..|.|.+++.+|+|.
T Consensus         7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            5678888888889999999999999999999999999999998864321    11122222 1  124556779999999


Q ss_pred             EEEEEEcCCCceE-EEEEEe----cCC----CCccc--------------------eeEEeC--------------CeEE
Q psy12422        260 YVCTATNSLGTAE-TKCKLT----PLN----SSNIL--------------------DLKYKN--------------GVAS  296 (356)
Q Consensus       260 Y~C~a~n~~g~~~-~~~~l~----p~~----~~~~~--------------------~~~~~~--------------~~~~  296 (356)
                      |+|.|.|..|... ..+.+.    |..    +....                    .+.|..              ..+.
T Consensus        87 Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~  166 (212)
T 2v9r_A           87 YVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK  166 (212)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTE
T ss_pred             EEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCe
Confidence            9999999987652 222222    110    00000                    444533              1247


Q ss_pred             EEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEecCCCCCCC
Q psy12422        297 LQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTVRSTPAANLGK  339 (356)
Q Consensus       297 L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~  339 (356)
                      |.|.+++.+|+|.|+|.|.|..|.... .+.|.|.++|.+...|
T Consensus       167 L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P  210 (212)
T 2v9r_A          167 LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA  210 (212)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--------
T ss_pred             EEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhhc
Confidence            999999999999999999999998776 5899999999887554

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.82  E-value=3e-19  Score=144.35  Aligned_cols=75  Identities=21%  Similarity=0.316  Sum_probs=54.8

Q ss_pred             CceeecCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCcee---EEEeCCE----EEEEEccCCCCC-CeEEEEEEEc
Q psy12422        197 TDKTIDDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILD---LKYKNGV----ASLQIQEVFPED-EGVYVCTATN  266 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~---~~~~~~~----~~L~i~~v~~~d-~G~Y~C~a~n  266 (356)
                      ....+.+|+.++|.|.+.| +|.+ .+.|+++|..+.......   ....++.    +.|.|.....+| .|.|+|.|.|
T Consensus       130 ~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~  209 (240)
T 3q5y_A          130 SKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQF  209 (240)
T ss_dssp             CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEE
T ss_pred             chhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEc
Confidence            3445667999999999988 6666 699999999986543221   1222332    359999999998 7799999999


Q ss_pred             CCCce
Q psy12422        267 SLGTA  271 (356)
Q Consensus       267 ~~g~~  271 (356)
                      .....
T Consensus       210 ~~~~~  214 (240)
T 3q5y_A          210 HGLSE  214 (240)
T ss_dssp             CCBCT
T ss_pred             CCCCC
Confidence            87643

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.82  E-value=2.2e-19  Score=142.76  Aligned_cols=148  Identities=27%  Similarity=0.466  Sum_probs=106.5

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCc--eeEEEeCCE--EEEEEccCCCCCCeEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI--LDLKYKNGV--ASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~--~~~~~~~~~--~~L~i~~v~~~d~G~Y~C  262 (356)
                      ..+|.+...+....+.+|+++.|.|.+.|+|.+.+.|+++|..+.....  .......+.  ..|.|.+++.+|+|.|+|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            6788999888889999999999999999999999999999998876421  222222221  223788999999999999


Q ss_pred             EEEcCCCceE---EEEEEec--CC---CC-cc--------------------ceeEEeC---------------------
Q psy12422        263 TATNSLGTAE---TKCKLTP--LN---SS-NI--------------------LDLKYKN---------------------  292 (356)
Q Consensus       263 ~a~n~~g~~~---~~~~l~p--~~---~~-~~--------------------~~~~~~~---------------------  292 (356)
                      .|.|..|...   ..+.+..  ..   .+ ..                    ..+.|..                     
T Consensus        87 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~  166 (217)
T 2vr9_A           87 VAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI  166 (217)
T ss_dssp             EEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEE
T ss_pred             EEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEe
Confidence            9999988653   2333321  10   00 00                    0344432                     


Q ss_pred             -CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCC
Q psy12422        293 -GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       293 -~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  334 (356)
                       ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.+.+....+
T Consensus       167 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~~~  209 (217)
T 2vr9_A          167 VDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKA  209 (217)
T ss_dssp             ETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC---
T ss_pred             cCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEeeh
Confidence             124799999999999999999999999998876665655443

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.81  E-value=1.6e-19  Score=138.43  Aligned_cols=136  Identities=15%  Similarity=0.213  Sum_probs=105.0

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...+....+.+|+++.|.|.+.+.|.+. +.|+++|..+...          ...|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~----------~~~L~i~~~~~~d~G~Y~C~~~   74 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTN   74 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECS
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC----------ceEEEEeCCCcccCEEEEEEee
Confidence            5668888888878899999999999999998777 8999999877532          2389999999999999999999


Q ss_pred             cCCCceEEEEEEecCC----CCc--------------------cceeEEeC---------CeEEEEEecCCCCCCeEEEE
Q psy12422        266 NSLGTAETKCKLTPLN----SSN--------------------ILDLKYKN---------GVASLQIQEVFPEDEGVYVC  312 (356)
Q Consensus       266 n~~g~~~~~~~l~p~~----~~~--------------------~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C  312 (356)
                      |..+.....+.+.+..    .+.                    ...+.|.+         ....|.|.+++.+|+|.|+|
T Consensus        75 n~~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C  154 (175)
T 1fnl_A           75 LSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFC  154 (175)
T ss_dssp             SSCCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEE
T ss_pred             CCcccccEEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEE
Confidence            9877666655554110    000                    01444443         34579999999999999999


Q ss_pred             EEEcCCcc-eEEEEEEEEEec
Q psy12422        313 TATNSLGT-AETKCKLTVRST  332 (356)
Q Consensus       313 ~a~n~~g~-~~~~~~l~V~~~  332 (356)
                      .|.|..|. .+..+.|.|.++
T Consensus       155 ~a~n~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          155 RGLVGSKNVSSETVNITITQA  175 (175)
T ss_dssp             EEEETTEEEECCCEEEEEECC
T ss_pred             EEEcCCCCccCccEEEEEeCC
Confidence            99997664 455888888764

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.81  E-value=2e-19  Score=146.74  Aligned_cols=81  Identities=16%  Similarity=0.294  Sum_probs=55.6

Q ss_pred             eecCCCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCceeEEEeC---CEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        200 TIDDGQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNILDLKYKN---GVASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      .+.+|+.++|.|.+.+. |.| .|.|++++..+...........+   ..+.|.|..+..+| |.|+|.|.|........
T Consensus       140 ~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~  218 (261)
T 2xqy_G          140 GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD  218 (261)
T ss_dssp             C--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEE
Confidence            35679999999999874 776 89999988765311000011111   12579999999888 99999999988877777


Q ss_pred             EEEecCC
Q psy12422        275 CKLTPLN  281 (356)
Q Consensus       275 ~~l~p~~  281 (356)
                      ..+.+..
T Consensus       219 ~~~~~~~  225 (261)
T 2xqy_G          219 KKIEPRA  225 (261)
T ss_dssp             EECCCC-
T ss_pred             EEecccc
Confidence            6666543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.81  E-value=1.5e-19  Score=143.38  Aligned_cols=138  Identities=20%  Similarity=0.331  Sum_probs=103.1

Q ss_pred             CCceeecCCCeEEEEEEEcCCC----CCeEEEEE----------------CCEEccC-----CCceeEEE---eCCEEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP----EPRVSWTK----------------NGQPLNS-----SNILDLKY---KNGVASL  247 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p----~p~i~W~~----------------~g~~~~~-----~~~~~~~~---~~~~~~L  247 (356)
                      +..+.+.+|+++.|.|.+.+.|    .+.+.|++                ++..+..     ..+..+..   ..+..+|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            3567899999999999998877    46899998                4443331     22222211   1134579


Q ss_pred             EEccCCCCCCeEEEEEEEcCCCceEEEEEEecCCCCccc---------------------------eeEEeC--------
Q psy12422        248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNIL---------------------------DLKYKN--------  292 (356)
Q Consensus       248 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~~---------------------------~~~~~~--------  292 (356)
                      .|.+++.+|+|.|+|.|.|..|.....+.|.+...+.+.                           .+.|..        
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~  166 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP  166 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCC
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccC
Confidence            999999999999999999999887777766632222111                           445543        


Q ss_pred             -------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecC
Q psy12422        293 -------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP  333 (356)
Q Consensus       293 -------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  333 (356)
                             ....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..||
T Consensus       167 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~  214 (214)
T 3jz7_A          167 TPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS  214 (214)
T ss_dssp             GGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred             ccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence                   24689999999999999999999999999999999998654

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.81  E-value=2.3e-19  Score=142.50  Aligned_cols=78  Identities=17%  Similarity=0.342  Sum_probs=67.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.|.|+|+|..+...   ++.+...+....|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus        33 G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  112 (215)
T 3mtr_A           33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD  112 (215)
T ss_dssp             TCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             CCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECC
Confidence            789999999999999999999999999754   33444445667999999999999999999999999998888888764


Q ss_pred             c
Q psy12422         78 E   78 (356)
Q Consensus        78 ~   78 (356)
                      .
T Consensus       113 ~  113 (215)
T 3mtr_A          113 T  113 (215)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.81  E-value=2.6e-19  Score=142.05  Aligned_cols=75  Identities=19%  Similarity=0.365  Sum_probs=49.7

Q ss_pred             ecCCCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCceeEEEeCCEEEE--EEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        201 IDDGQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNILDLKYKNGVASL--QIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       201 v~~g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L--~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      +.+|+.++|.|.+.|. |.| .|.|+++|..+........ ...+...+  .+.....+| |.|+|.|.|..+.......
T Consensus       134 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~-~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~~~  211 (215)
T 1c5d_H          134 DTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAV-LQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVDKK  211 (215)
T ss_dssp             CCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCBCCCE-EETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             hccCCcEEEEEEEeeeEcCCcEEEEccCCccCceEecCcc-cCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEEEe
Confidence            5679999999999876 877 8999998865432111111 12232221  133444456 9999999999998776655


Q ss_pred             E
Q psy12422        277 L  277 (356)
Q Consensus       277 l  277 (356)
                      +
T Consensus       212 ~  212 (215)
T 1c5d_H          212 L  212 (215)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.81  E-value=2.7e-19  Score=139.83  Aligned_cols=141  Identities=13%  Similarity=0.173  Sum_probs=98.7

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+.. .+.+|++++|.|.+.+ |.+.+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 3p2t_A            3 LPKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYRS   79 (196)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEE-CCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccc-ccccCCceEEEEeccCCcccCceEEEEEeC
Confidence            456778777766 8999999999999998 7789999999987754211 111113457899999999999999999999


Q ss_pred             CCCc----eEEEEEEe-cCCCCcc--------c----------------eeEEeC------------------CeEEEEE
Q psy12422        267 SLGT----AETKCKLT-PLNSSNI--------L----------------DLKYKN------------------GVASLQI  299 (356)
Q Consensus       267 ~~g~----~~~~~~l~-p~~~~~~--------~----------------~~~~~~------------------~~~~L~i  299 (356)
                      ..|.    ....+.+. +...+.+        .                .+.|.+                  ....|.|
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i  159 (196)
T 3p2t_A           80 PVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPM  159 (196)
T ss_dssp             TTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEEEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEE
T ss_pred             CCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCCCCEEEEEeCCCcccceeecccccccCcceEEEe
Confidence            9872    22333332 1111110        0                222321                  2467999


Q ss_pred             ecCCCCCCeEEEEEEEcCCc-----ceEEEEEEEEE
Q psy12422        300 QEVFPEDEGVYVCTATNSLG-----TAETKCKLTVR  330 (356)
Q Consensus       300 ~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~  330 (356)
                      .+++.+|+|.|+|.|+|..+     ..+..+.|.|.
T Consensus       160 ~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          160 SPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             CSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             CCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            99999999999999999886     23335666664

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.81  E-value=7.4e-19  Score=145.22  Aligned_cols=78  Identities=23%  Similarity=0.357  Sum_probs=57.9

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcC-CC-CCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKG-DP-EPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVF  253 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g-~p-~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~  253 (356)
                      +.+...+. ..+.+|++++|.|.+.+ .+ .+.+.|++.  +..+.            ...++..........|.|.+++
T Consensus       141 ~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  219 (280)
T 3fku_X          141 PGLTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQ  219 (280)
T ss_dssp             CSBBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCC
T ss_pred             eEEEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCC
Confidence            44444444 78999999999999987 44 478999982  22221            1234555556667789999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy12422        254 PEDEGVYVCTATNSL  268 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~  268 (356)
                      .+|+|.|.|.+.|..
T Consensus       220 ~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          220 PEDEADYYCSTWDSS  234 (280)
T ss_dssp             GGGCSEEEEEEEETT
T ss_pred             HHHCEEEEEEEecCC
Confidence            999999999999976

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.81  E-value=2.2e-19  Score=145.54  Aligned_cols=76  Identities=18%  Similarity=0.315  Sum_probs=53.9

Q ss_pred             CceeecCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeEEE-------eCC----EEEEEEccCCCCC-CeEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDLKY-------KNG----VASLQIQEVFPED-EGVYVC  262 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~~~-------~~~----~~~L~i~~v~~~d-~G~Y~C  262 (356)
                      ....+.+|+.++|.|.+.| .|++ .+.|+++|..+..........       .++    .+.|.|.....+| .|.|+|
T Consensus       132 ~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC  211 (245)
T 4ei6_B          132 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC  211 (245)
T ss_dssp             CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEE
T ss_pred             CcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEE
Confidence            3445667999999999988 4545 799999999887542211100       111    1358899988888 999999


Q ss_pred             EEEcCCCceE
Q psy12422        263 TATNSLGTAE  272 (356)
Q Consensus       263 ~a~n~~g~~~  272 (356)
                      .|.|......
T Consensus       212 ~v~~~~l~~~  221 (245)
T 4ei6_B          212 QVQFYGLSEN  221 (245)
T ss_dssp             EEEECCBCTT
T ss_pred             EEEECCCCCc
Confidence            9999765443

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.81  E-value=4.1e-19  Score=141.29  Aligned_cols=139  Identities=18%  Similarity=0.299  Sum_probs=104.0

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ...+.+...+....+.+|+.+.|.|.+.++|.+.+.|++++..+....         ...|.|.+++.+|+|.|+|.|.|
T Consensus        16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n   86 (218)
T 3k0w_A           16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN---------TSELIFNAVHVKDAGFYVCRVNN   86 (218)
T ss_dssp             ---CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC---------SSEEEETTCCGGGCEEEEEEEEC
T ss_pred             CCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC---------CCEEEEccCChhhCeEeEEEEEc
Confidence            455777788888999999999999999999999999999999886542         23799999999999999999999


Q ss_pred             CCCceE---EEEEEecC--C-----------CCccc--------------------------eeEEeC--------CeEE
Q psy12422        267 SLGTAE---TKCKLTPL--N-----------SSNIL--------------------------DLKYKN--------GVAS  296 (356)
Q Consensus       267 ~~g~~~---~~~~l~p~--~-----------~~~~~--------------------------~~~~~~--------~~~~  296 (356)
                      ..|...   ..+.+...  .           .+.+.                          .+.|..        ....
T Consensus        87 ~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~~~  166 (218)
T 3k0w_A           87 NFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL  166 (218)
T ss_dssp             TTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCSSE
T ss_pred             CCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCCCE
Confidence            987542   22222200  0           01110                          455543        3457


Q ss_pred             EEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEEecCC
Q psy12422        297 LQIQEVFPEDEGVYVCTATNSLGT-AETKCKLTVRSTPA  334 (356)
Q Consensus       297 L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~  334 (356)
                      |.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...+.
T Consensus       167 L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~  205 (218)
T 3k0w_A          167 YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN  205 (218)
T ss_dssp             EEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC---
T ss_pred             EEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCcc
Confidence            999999999999999999999888 45588888887544

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.80  E-value=4.8e-19  Score=144.38  Aligned_cols=132  Identities=20%  Similarity=0.280  Sum_probs=90.6

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCC-----CCeEEEEEC--CEEc------------cCCCceeEEEeCCEEEEEEc
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDP-----EPRVSWTKN--GQPL------------NSSNILDLKYKNGVASLQIQ  250 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p-----~p~i~W~~~--g~~~------------~~~~~~~~~~~~~~~~L~i~  250 (356)
                      +.+...+..+.+.+|++++|.|.+.+.|     .+.+.|+|+  |..+            ....++.....++...|.|.
T Consensus        39 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  118 (254)
T 2c1o_A           39 LVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKIS  118 (254)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             eeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEEC
Confidence            3344445667899999999999999988     388999983  3221            11245555556677799999


Q ss_pred             cCCCCCCeEEEEEEEcCCCceEE---EEEEe-cCCCCcc----------------------------ceeEEeC------
Q psy12422        251 EVFPEDEGVYVCTATNSLGTAET---KCKLT-PLNSSNI----------------------------LDLKYKN------  292 (356)
Q Consensus       251 ~v~~~d~G~Y~C~a~n~~g~~~~---~~~l~-p~~~~~~----------------------------~~~~~~~------  292 (356)
                      +++.+|+|.|.|.|.|..+....   .+.+. +..+|.+                            ..+.|.+      
T Consensus       119 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  198 (254)
T 2c1o_A          119 RVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  198 (254)
T ss_dssp             SCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEEC
T ss_pred             cCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCccc
Confidence            99999999999999998653211   22222 0000100                            0244432      


Q ss_pred             -C-----------------eEEEEEecCCCCCCeEEEEEEEcCCcce
Q psy12422        293 -G-----------------VASLQIQEVFPEDEGVYVCTATNSLGTA  321 (356)
Q Consensus       293 -~-----------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  321 (356)
                       .                 .+.|.|.++..+|+|.|+|.|.|.....
T Consensus       199 ~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          199 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence             1                 2579999999999999999999987654

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.80  E-value=2.5e-18  Score=142.88  Aligned_cols=222  Identities=13%  Similarity=0.105  Sum_probs=125.5

Q ss_pred             ccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccceeeeeeccccCCC
Q psy12422         89 HNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDS  168 (356)
Q Consensus        89 ~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (356)
                      ...+.+|+.+.|.|.+...  +.|++++..+.............          ..+........+.+.|.|......+.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~--v~W~~~~~~~~~~~~~~~~~~~~----------~~L~i~~~~~~D~G~Y~C~a~n~~g~   76 (289)
T 3mjg_X            9 ELVLNVSSTFVLTCSGSAP--VVWERMSQEPPQEMAKAQDGTFS----------SVLTLTNLTGLDTGEYFCTHNDSRGL   76 (289)
T ss_dssp             EEECCTTCCEEEEEEESSC--CEEEBTTBCCSEEEEECTTSCEE----------EEEEECSCCGGGCEEEEEECCC----
T ss_pred             eEEEeCCCcEEEEEeccce--EEEECCCCCcccceeccCCCcee----------EEEEEccCChhhCEEEEEEEcccCCC
Confidence            3457899999999998865  99999887763211111111100          00111112222333333332221110


Q ss_pred             CCcccccceeeecCCCCCCCCCeecccCC--ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEE
Q psy12422        169 PSRSRSTTKELIMPPDTAMTPPQFANKLT--DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS  246 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~  246 (356)
                       .........+.+..   ...|.+...+.  ...+.+|+.+.|.|.+. .|.|.+.|++++.......    ..+.....
T Consensus        77 -~~~~~~~~~v~v~~---p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~----~~~~~~~~  147 (289)
T 3mjg_X           77 -ETDERKRLYIFVPD---PTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPV----PYDHQRGF  147 (289)
T ss_dssp             ---CCCEEEEEECCC---TTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCC----CEETTTEE
T ss_pred             -CcCcEEeEEEEEEC---CCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccce----eecCCcCe
Confidence             01122233344421   01122211111  26789999999999999 7888999998642222111    11111111


Q ss_pred             EEEccCCCCCCeEEEEEEEcCCCceEEE-EEEecC--CCCccc--------------------------eeEEeC-----
Q psy12422        247 LQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTPL--NSSNIL--------------------------DLKYKN-----  292 (356)
Q Consensus       247 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~p~--~~~~~~--------------------------~~~~~~-----  292 (356)
                      +     ...|+|.|+|.|.|..+..... ..+...  .++.+.                          .+.|..     
T Consensus       148 ~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~  222 (289)
T 3mjg_X          148 S-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKES  222 (289)
T ss_dssp             E-----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSS
T ss_pred             e-----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccC
Confidence            1     3579999999999877654332 222211  111111                          455641     


Q ss_pred             -----------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCC
Q psy12422        293 -----------------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAAN  336 (356)
Q Consensus       293 -----------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  336 (356)
                                       ....|.|.+++.+|+|.|+|.|.|..|...+++.|.|.++|...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~  283 (289)
T 3mjg_X          223 GRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH  283 (289)
T ss_dssp             SCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred             CCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence                             22689999999999999999999999999999999999998754

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.80  E-value=9.4e-19  Score=139.51  Aligned_cols=71  Identities=15%  Similarity=0.313  Sum_probs=51.2

Q ss_pred             cCCCeEEEEEEEcC-CCC-C-eEEEEECCEEccCCCceeEE-EeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        202 DDGQCLDLSAVVKG-DPE-P-RVSWTKNGQPLNSSNILDLK-YKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       202 ~~g~~~~l~C~~~g-~p~-p-~i~W~~~g~~~~~~~~~~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      .+|+.++|.|.+.+ +|. + .+.|+++|..+......... ..++    .+.|.|.....+|+|.|+|.|.|..+...
T Consensus       136 ~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          136 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            67999999999987 776 4 79999998766311100000 0111    23699999999999999999999987644

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.80  E-value=3.6e-19  Score=122.34  Aligned_cols=93  Identities=24%  Similarity=0.543  Sum_probs=82.1

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC--ceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ..||.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|++||..+....  ++.+...++.++|.|.+++.+|+|.|+|.|
T Consensus         3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence            356888888888999999999999999999999999999999997654  455666677789999999999999999999


Q ss_pred             EcCCCceEEEEEEec
Q psy12422        265 TNSLGTAETKCKLTP  279 (356)
Q Consensus       265 ~n~~g~~~~~~~l~p  279 (356)
                      .|..|....++.|.+
T Consensus        83 ~N~~G~~~~~~~l~V   97 (100)
T 3knb_A           83 GNEFGSDSATVNIHI   97 (100)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEE
Confidence            999999988888764

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.80  E-value=4.5e-19  Score=140.35  Aligned_cols=138  Identities=20%  Similarity=0.350  Sum_probs=99.6

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc------------cCCCceeEEEeCCEEEEEEccCCCCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL------------NSSNILDLKYKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~d~  257 (356)
                      ..+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....++.  ...  ..|.|.+++.+|+
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~--~~L~i~~v~~~D~   77 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT--FSS--SGITFSSVTRKDN   77 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEE--EET--TEEEESCCCGGGC
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEE--eec--eeEEEcccCcccC
Confidence            34555667788999999999999999999999999976542            1122222  223  4899999999999


Q ss_pred             eEEEEEEEcCCC--ceEEEEEEecCCCCccc---------------------------eeEEeC----------------
Q psy12422        258 GVYVCTATNSLG--TAETKCKLTPLNSSNIL---------------------------DLKYKN----------------  292 (356)
Q Consensus       258 G~Y~C~a~n~~g--~~~~~~~l~p~~~~~~~---------------------------~~~~~~----------------  292 (356)
                      |.|+|.|.|..|  .....+.|.+..++.+.                           .+.|..                
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~  157 (212)
T 1f97_A           78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAF  157 (212)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSC
T ss_pred             eEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccc
Confidence            999999999977  33444444421111110                           334432                


Q ss_pred             ---------CeEEEEEecCCCCCCeEEEEEEEcCCcce--EEEEEEEEEe
Q psy12422        293 ---------GVASLQIQEVFPEDEGVYVCTATNSLGTA--ETKCKLTVRS  331 (356)
Q Consensus       293 ---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~  331 (356)
                               ..+.|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|+.
T Consensus       158 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          158 MNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             SSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             cCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence                     24579999999999999999999999988  4466666664

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.80  E-value=1.3e-19  Score=147.24  Aligned_cols=77  Identities=18%  Similarity=0.335  Sum_probs=39.7

Q ss_pred             eecCCCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        200 TIDDGQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      .+.+|+.++|.|.+.|. |.| .|.|+++|..+...........++    .+.|.|.++..+| |.|+|.|.|.......
T Consensus       144 ~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~  222 (257)
T 3bn9_D          144 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  222 (257)
T ss_dssp             ---------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEE
T ss_pred             cccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCE
Confidence            35679999999999875 777 899999987642110000111111    2468888888888 9999999998776555


Q ss_pred             EEEE
Q psy12422        274 KCKL  277 (356)
Q Consensus       274 ~~~l  277 (356)
                      ...+
T Consensus       223 ~~~i  226 (257)
T 3bn9_D          223 DKKV  226 (257)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5444

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.80  E-value=1.1e-19  Score=148.55  Aligned_cols=173  Identities=12%  Similarity=0.142  Sum_probs=102.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc---c--c-------------CCeeE--EecCCeEEEEEeeCCCCCCeEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL---S--K-------------RDYSM--SYSDGVVSMEIIDCKPEDSGEYKC   58 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l---~--~-------------~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C   58 (356)
                      |++|+|.|.+.+.|.+.+.|||.  +...   .  .             .++..  ....+..+|+|.+++.+|+|.|.|
T Consensus        17 G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   96 (259)
T 3omz_A           17 GSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYC   96 (259)
T ss_dssp             TCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCEEEEE
T ss_pred             CCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcccCEEEEE
Confidence            78999999999999899999992  2111   0  0             01111  122344579999999999999999


Q ss_pred             EEEeCCc---eeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEE
Q psy12422         59 VATNKHG---TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQM  135 (356)
Q Consensus        59 ~a~n~~g---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~  135 (356)
                      .+.|..+   .......|.|......+....                         +.                      
T Consensus        97 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~-------------------------~~----------------------  129 (259)
T 3omz_A           97 ATWDQNYYKKLFGSGTSLVVTDKQGSADDAK-------------------------KD----------------------  129 (259)
T ss_dssp             EEECTTSSCEEECCCEEEEEEC----------------------------------------------------------
T ss_pred             EEeeCCccccEECCCCEEEEecCCCCccccc-------------------------cc----------------------
Confidence            9999765   233445666654311110000                         00                      


Q ss_pred             eeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcC
Q psy12422        136 STLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKG  215 (356)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g  215 (356)
                                                              .  .     ....+|.+...+....+.+|++++|.|.+.+
T Consensus       130 ----------------------------------------~--~-----~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  162 (259)
T 3omz_A          130 ----------------------------------------A--A-----KKDGAQKVTQAQSSVSMPVRKAVTLNCLYET  162 (259)
T ss_dssp             ------------------------------------------------------CEEECCCCCEEEETTCCEEECCEEEC
T ss_pred             ----------------------------------------c--c-----cccCCeeeEEeCCEEEEcCCCCEEEEEECCC
Confidence                                                    0  0     0022344555556678999999999999987


Q ss_pred             C-CCCeEEEEECC--EEcc------------CCCceeEE--EeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        216 D-PEPRVSWTKNG--QPLN------------SSNILDLK--YKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       216 ~-p~p~i~W~~~g--~~~~------------~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      . |.+.+.|+|.+  ..+.            ...++...  .......|.|.+++.+|+|.|.|.+.+.
T Consensus       163 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          163 SWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             CCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             ccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            5 78899999843  1110            01122221  1123356999999999999999999864

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.80  E-value=5.2e-18  Score=152.14  Aligned_cols=246  Identities=14%  Similarity=0.178  Sum_probs=135.3

Q ss_pred             CCceEEEEEeccC-CCC-eeEEeeCCEEccc-CCeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCceeEEEE--
Q psy12422          1 MQNVIKVKVGSTK-PPP-TVKWYKGNRELSK-RDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTDETNC--   71 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~-~v~W~k~g~~l~~-~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~--   71 (356)
                      |+++.|.|.+.|. |.| .|+|++++..... ........++.    ..|+|.....+ .|.|+|.|.|..+.....+  
T Consensus       150 ~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~  228 (512)
T 1zvo_C          150 NSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFR  228 (512)
T ss_pred             CCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEec
Confidence            3679999999876 765 8999997653211 11111222332    35888877766 9999999999987765544  


Q ss_pred             ---------EEEEecccc------------------------------------------------chhhhhh---cccc
Q psy12422         72 ---------VVIVESEEE------------------------------------------------SKEQQEL---AHNF   91 (356)
Q Consensus        72 ---------~l~v~~~~~------------------------------------------------~~~~~~~---~~~~   91 (356)
                               .+.+..++.                                                .++...+   ....
T Consensus       229 ~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~  308 (512)
T 1zvo_C          229 WPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQD  308 (512)
T ss_pred             CCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHH
Confidence                     233332111                                                0000001   1122


Q ss_pred             cccCccceeeeccc---C-CceeeecccccccCCcccc-----CCCCceE-----EE---EeeccccccccccccCCCcc
Q psy12422         92 LYSGDRKYIEKHIR---P-APAIITTRQEIKSSYSSHT-----DDTGRTT-----TQ---MSTLSSNYSSSTNNATSPSK  154 (356)
Q Consensus        92 ~~~g~~~~l~c~~~---p-~p~i~w~~~~~~~~~~~~~-----~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~  154 (356)
                      +.+|+.+.|.|.+.   | ...|.|++++.........     ..++...     ..   ...+.+.|.|.+.+..... 
T Consensus       309 ~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~-  387 (512)
T 1zvo_C          309 LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP-  387 (512)
T ss_pred             hccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCC-
Confidence            56799999999986   3 2379999988764311000     0111000     00   0111234444433221111 


Q ss_pred             ceeeeeeccccCCCCCcccccceeeecCCCC-CCCCCeecccCCceeecCCCeEE-EEEEEcCCCCC--eEEEEECCEEc
Q psy12422        155 KITRRMNSILDTDSPSRSRSTTKELIMPPDT-AMTPPQFANKLTDKTIDDGQCLD-LSAVVKGDPEP--RVSWTKNGQPL  230 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~v~~g~~~~-l~C~~~g~p~p--~i~W~~~g~~~  230 (356)
                                     .     ...+...... ...+|.+...+...   +|+.+. |.|.+.|++++  .+.|+|||..+
T Consensus       388 ---------------~-----~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~  444 (512)
T 1zvo_C          388 ---------------Q-----RLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREV  444 (512)
T ss_pred             ---------------C-----ceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeEC
Confidence                           0     1111110000 02345544333221   789999 99999986544  58999999998


Q ss_pred             cCCCcee--EE-EeCC-----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        231 NSSNILD--LK-YKNG-----VASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       231 ~~~~~~~--~~-~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      .......  .. ..++     .+.|.|.....+|.|.|+|.|.|.....
T Consensus       445 ~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~  493 (512)
T 1zvo_C          445 NTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRT  493 (512)
T ss_pred             cCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCC
Confidence            7543211  11 1122     1467777777788999999999987653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.80  E-value=1e-19  Score=155.36  Aligned_cols=145  Identities=17%  Similarity=0.250  Sum_probs=114.1

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCe-EEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEG-VYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~  265 (356)
                      ..+|.+...+....+.+|+++.|.|.+.|.|.|.+.|++++..+......  ........|.|.+++.+|+| .|+|.|.
T Consensus       156 c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a~  233 (347)
T 2ifg_A          156 CGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAE  233 (347)
T ss_dssp             CCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             CCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc--ceecccceEEEeeCChHHCCCeEEEEEE
Confidence            56788888888889999999999999999999999999988664422111  12334578999999999999 9999999


Q ss_pred             cCCCceEEEEEEecCCCCcc-c---------------------eeEEeC------------------------CeEEEEE
Q psy12422        266 NSLGTAETKCKLTPLNSSNI-L---------------------DLKYKN------------------------GVASLQI  299 (356)
Q Consensus       266 n~~g~~~~~~~l~p~~~~~~-~---------------------~~~~~~------------------------~~~~L~i  299 (356)
                      |..|.....+.+.+..+|.+ .                     .+.|..                        ..+.|.|
T Consensus       234 n~~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I  313 (347)
T 2ifg_A          234 NDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL  313 (347)
T ss_dssp             ETTEECCEEECCCCBEEEEEEECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEE
T ss_pred             cCCCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEE
Confidence            99987776665553322221 0                     334432                        1456999


Q ss_pred             ecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecC
Q psy12422        300 QEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP  333 (356)
Q Consensus       300 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  333 (356)
                      .+++.+|+|.|+|.|.|..|..++.+.|.|.++|
T Consensus       314 ~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          314 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             CCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            9999999999999999999999999999998876

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.80  E-value=8.1e-19  Score=144.23  Aligned_cols=165  Identities=16%  Similarity=0.205  Sum_probs=107.8

Q ss_pred             CCceEEEEEeccCCCCeeEEee--CCEEc------------cc-----CCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK--GNREL------------SK-----RDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k--~g~~l------------~~-----~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|.+. .|.+.+.|||  .+..+            ..     .++.... ..+..+|+|.+++.+|+|.|.|.+
T Consensus        41 G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~  119 (268)
T 3pl6_D           41 GKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAVYLCAT  119 (268)
T ss_dssp             TCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCEEEEEEE
Confidence            79999999986 5788999999  22211            11     2333332 244679999999999999999999


Q ss_pred             EeC--CceeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeec
Q psy12422         61 TNK--HGTDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTL  138 (356)
Q Consensus        61 ~n~--~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (356)
                      .|.  .........|.|......                                                         
T Consensus       120 ~~~~~~~~~~~~~~l~V~~~~~~---------------------------------------------------------  142 (268)
T 3pl6_D          120 SALGDTQYFGPGTRLTVLEDLKN---------------------------------------------------------  142 (268)
T ss_dssp             ESSSSSCEECCCEEEEEESCGGG---------------------------------------------------------
T ss_pred             ecCCCceeeCCcEEEEEecCccc---------------------------------------------------------
Confidence            974  333333445555431000                                                         


Q ss_pred             cccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeec-ccCCceeecCCCeEEEEEEEcCCC
Q psy12422        139 SSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFA-NKLTDKTIDDGQCLDLSAVVKGDP  217 (356)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~~~l~C~~~g~p  217 (356)
                                                                      ..+|.+. ..+....+.+|+.++|.|.+.|.|
T Consensus       143 ------------------------------------------------~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~  174 (268)
T 3pl6_D          143 ------------------------------------------------VFPPEVAVFEPSEAEISHTQKATLVCLATGFY  174 (268)
T ss_dssp             ------------------------------------------------CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEB
T ss_pred             ------------------------------------------------ccCCceEEeCCCcccccCCCceEEEEEECccc
Confidence                                                            1123222 223344566799999999998865


Q ss_pred             CC--eEEEEECCEEccCCCceeE---E----EeCC----EEEEEEccCCCCC-CeEEEEEEEcCCCce
Q psy12422        218 EP--RVSWTKNGQPLNSSNILDL---K----YKNG----VASLQIQEVFPED-EGVYVCTATNSLGTA  271 (356)
Q Consensus       218 ~p--~i~W~~~g~~~~~~~~~~~---~----~~~~----~~~L~i~~v~~~d-~G~Y~C~a~n~~g~~  271 (356)
                      ++  .+.|+++|..+........   .    ..++    .+.|.|.....+| +|.|+|.|.|.....
T Consensus       175 p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          175 PDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             SSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             CCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence            54  7999999988864321110   0    0011    1467888888887 999999999987654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.79  E-value=3e-18  Score=134.32  Aligned_cols=132  Identities=21%  Similarity=0.303  Sum_probs=95.8

Q ss_pred             eeecCCCeEEEEEEEcCCCCCeEEEEECC-EEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNG-QPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      ..+.+|+++.|.|.+.|.|.|.+.|+++. ..+.  ..  ....+....|.|.+++.+|+|.|.|.|.|..|.....+.|
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l   86 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ce--EEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence            34569999999999999999999999843 2221  11  2234455689999999999999999999998877666666


Q ss_pred             ecCCCCcc-----------------------------ceeEEeCC---------------------eEEEEEecCCCCCC
Q psy12422        278 TPLNSSNI-----------------------------LDLKYKNG---------------------VASLQIQEVFPEDE  307 (356)
Q Consensus       278 ~p~~~~~~-----------------------------~~~~~~~~---------------------~~~L~i~~v~~~d~  307 (356)
                      .+...+..                             ..+.|.++                     ...|.|..+..+|+
T Consensus        87 ~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~  166 (202)
T 1vca_A           87 EIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIG  166 (202)
T ss_dssp             EEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTT
T ss_pred             EEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCC
Confidence            52211110                             02345321                     23456777788899


Q ss_pred             eEEEEEEEcCCcc-------eEEEEEEEEEecCC
Q psy12422        308 GVYVCTATNSLGT-------AETKCKLTVRSTPA  334 (356)
Q Consensus       308 G~Y~C~a~n~~g~-------~~~~~~l~V~~~p~  334 (356)
                      |.|+|+|.|..|.       .++.+.|.|.++|.
T Consensus       167 g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          167 KVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             CEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             CeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            9999999998876       45689999999986

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.79  E-value=6e-19  Score=122.73  Aligned_cols=78  Identities=26%  Similarity=0.367  Sum_probs=69.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.|.|+|||||+.|..+ ++.+...++..+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++
T Consensus        28 G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~p  106 (107)
T 3knb_B           28 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP  106 (107)
T ss_dssp             TSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-
T ss_pred             CCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcC
Confidence            789999999999999999999999999765 455556667779999999999999999999999999999999999865

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.79  E-value=1.8e-19  Score=145.04  Aligned_cols=67  Identities=13%  Similarity=0.160  Sum_probs=50.3

Q ss_pred             CCceEEEEEeccC---CCC-eeEEeeCCEEcccCC--eeEEecCC----eEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVGSTK---PPP-TVKWYKGNRELSKRD--YSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~~g~---p~~-~v~W~k~g~~l~~~~--~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      |++++|.|.+.|.   |.+ .|+|||++..+....  ......++    ...|+|.+++.+|+|.|+|.+.|..+..
T Consensus        32 G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           32 GLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             SSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             CCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            7899999999876   776 899999987664321  11122222    3479999999999999999999987653

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.79  E-value=2e-18  Score=140.44  Aligned_cols=80  Identities=16%  Similarity=0.295  Sum_probs=54.9

Q ss_pred             eecCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeEEEeC---CEEEEEEccCCCCCCeEEEEEEEcCCCceEEE
Q psy12422        200 TIDDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDLKYKN---GVASLQIQEVFPEDEGVYVCTATNSLGTAETK  274 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  274 (356)
                      .+.+|+.++|.|.+.| +|.+ .+.|+++|..+...........+   ..+.|.|.....+| |.|+|.|.|..+.....
T Consensus       135 ~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~  213 (253)
T 3liz_H          135 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  213 (253)
T ss_dssp             ----CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceE
Confidence            4567999999999987 7766 79999988643211000001111   12579999999999 99999999999988877


Q ss_pred             EEEecC
Q psy12422        275 CKLTPL  280 (356)
Q Consensus       275 ~~l~p~  280 (356)
                      ..+.+.
T Consensus       214 ~~~~~~  219 (253)
T 3liz_H          214 KKIVPR  219 (253)
T ss_dssp             EECCCC
T ss_pred             EEecCc
Confidence            777643

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.78  E-value=5.3e-19  Score=139.40  Aligned_cols=68  Identities=24%  Similarity=0.380  Sum_probs=46.1

Q ss_pred             CCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeEE-EeCC----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        203 DGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDLK-YKNG----VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       203 ~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      .|..+.|.|.+.|. |+ +.|.|++||..+......... ..++    .+.|.|.....+|.|.|+|.|.|....
T Consensus       123 ~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          123 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            45669999999885 54 389999999887632211111 1122    134566666667899999999998764

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.78  E-value=3.9e-19  Score=142.56  Aligned_cols=66  Identities=6%  Similarity=0.077  Sum_probs=49.8

Q ss_pred             CCceEEEEEeccC-CC-C-eeEEeeCCEEc-ccCCeeE-EecCCe----EEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          1 MQNVIKVKVGSTK-PP-P-TVKWYKGNREL-SKRDYSM-SYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~-~v~W~k~g~~l-~~~~~~~-~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      |++++|.|.+.|. |. | .|+|+|+|+.+ ....... ...++.    ..|+|.+++.+|+|.|+|.+.|..+.
T Consensus        28 G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  102 (231)
T 2w59_A           28 SLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELP  102 (231)
T ss_dssp             SCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred             CCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCC
Confidence            7899999999874 74 4 99999999887 3322111 223333    36999999999999999999997654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.78  E-value=6.8e-19  Score=138.07  Aligned_cols=140  Identities=21%  Similarity=0.305  Sum_probs=101.5

Q ss_pred             ecccCCceeecCCCeEEEEEE-EcCCCC-CeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        192 FANKLTDKTIDDGQCLDLSAV-VKGDPE-PRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~-~~g~p~-p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ....+..+.+.+|+.+.|.|. +.++|. +.+.|++++..+................|.|.+++.+|+|.|+|.+.|..+
T Consensus        11 ~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   90 (201)
T 3s97_C           11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSI   90 (201)
T ss_dssp             CSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGG
T ss_pred             CcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCC
Confidence            334457788999999999999 889998 999999998777532221222223334799999999999999999999776


Q ss_pred             ceEEE---EEEe--cC-----CCC-------cc-------------------ceeEEeC-------------CeEEEEEe
Q psy12422        270 TAETK---CKLT--PL-----NSS-------NI-------------------LDLKYKN-------------GVASLQIQ  300 (356)
Q Consensus       270 ~~~~~---~~l~--p~-----~~~-------~~-------------------~~~~~~~-------------~~~~L~i~  300 (356)
                      .....   ..+.  +.     .++       ..                   ..+.|..             ....|.|.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~  170 (201)
T 3s97_C           91 TKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIF  170 (201)
T ss_dssp             TEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEEC
T ss_pred             CcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEc
Confidence            55431   1110  00     000       00                   0344432             34689999


Q ss_pred             cCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        301 EVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       301 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                      +++.+|+|.|+|.|.|..|..+..+.|.|++
T Consensus       171 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~a  201 (201)
T 3s97_C          171 NIQLEDEGIYECEAENIRGKDKHQARIYVQA  201 (201)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCChhhCEEEEEEEEecCCceeeeEEEEEeC
Confidence            9999999999999999999999999999874

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.78  E-value=1.9e-18  Score=138.19  Aligned_cols=135  Identities=16%  Similarity=0.159  Sum_probs=91.8

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC---eEEEEECCEEc-----------cCC------CceeEE---EeCCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP---RVSWTKNGQPL-----------NSS------NILDLK---YKNGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p---~i~W~~~g~~~-----------~~~------~~~~~~---~~~~~~~L~i~~v~  253 (356)
                      ..+.+.+|++++|.|.+.+.|.+   .|.|+|++...           ...      .+....   ...+..+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            45778999999999999877654   59999865321           110      111111   12345789999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEecCCCCcc-------------------------ceeEEeCC---------------
Q psy12422        254 PEDEGVYVCTATNSLGTAETKCKLTPLNSSNI-------------------------LDLKYKNG---------------  293 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~-------------------------~~~~~~~~---------------  293 (356)
                      .+|+|.|+|.|.|..|.....+.+.+......                         ..+.|.++               
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~  171 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVAD  171 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEEC
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEEC
Confidence            99999999999999998877766652211110                         04555431               


Q ss_pred             ----eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        294 ----VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       294 ----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                          ...+.+..++.+|+|.|+|.|+|.+|..++.+.|.|..
T Consensus       172 ~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          172 GVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             TTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             CCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence                12345567889999999999999999999999998865

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.78  E-value=1.6e-18  Score=137.24  Aligned_cols=137  Identities=16%  Similarity=0.222  Sum_probs=92.7

Q ss_pred             CCceeecCC--CeEEEEEEEcCCCCCeEEEEE---CCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        196 LTDKTIDDG--QCLDLSAVVKGDPEPRVSWTK---NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       196 ~~~~~v~~g--~~~~l~C~~~g~p~p~i~W~~---~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      +..+.+.+|  +++.|.|.+.+ |.+.+.|++   +|..+........ ....  .|.|.+++.+|+|.|+|.|.|..+.
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~-~~~~--~l~I~~v~~~D~G~Y~C~a~n~~~~   89 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW-DSKK--GFTIPSYMISYAGMVFCEAKINDES   89 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEE-ETTT--EEEEEGGGTTTCSEEEEEEC----C
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccc-cCCc--cEEEccCChhcCceEEEEEEECCee
Confidence            467889999  99999999986 789999988   4766665433322 2222  6999999999999999999985443


Q ss_pred             eEEE-EEEecC---------CCCcc----------------------ceeEEeC-------------------------C
Q psy12422        271 AETK-CKLTPL---------NSSNI----------------------LDLKYKN-------------------------G  293 (356)
Q Consensus       271 ~~~~-~~l~p~---------~~~~~----------------------~~~~~~~-------------------------~  293 (356)
                      .... +.+...         .++..                      ..+.|..                         .
T Consensus        90 ~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~  169 (213)
T 2x1w_L           90 YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF  169 (213)
T ss_dssp             EECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEE
T ss_pred             EEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceee
Confidence            2221 222110         00000                      0233332                         1


Q ss_pred             eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCC
Q psy12422        294 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAAN  336 (356)
Q Consensus       294 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  336 (356)
                      .+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|..+|.|.
T Consensus       170 ~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~  212 (213)
T 2x1w_L          170 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIEG  212 (213)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-----
T ss_pred             eEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccccC
Confidence            2349999999999999999999999999999999999998764

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.78  E-value=2.2e-18  Score=141.77  Aligned_cols=76  Identities=20%  Similarity=0.316  Sum_probs=54.0

Q ss_pred             CceeecCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeE---E-----EeCC---EEEEEEccCCCCC-CeEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDL---K-----YKNG---VASLQIQEVFPED-EGVYVC  262 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~---~-----~~~~---~~~L~i~~v~~~d-~G~Y~C  262 (356)
                      ....+.+|+.++|.|.+.| +|.| .+.|+++|..+........   .     .++.   .+.|.|.....+| .|.|+|
T Consensus       157 ~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC  236 (270)
T 3qib_D          157 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC  236 (270)
T ss_dssp             CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEE
T ss_pred             CccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEE
Confidence            3345566999999999988 6766 7999999998865322110   0     0111   1467888888888 999999


Q ss_pred             EEEcCCCceE
Q psy12422        263 TATNSLGTAE  272 (356)
Q Consensus       263 ~a~n~~g~~~  272 (356)
                      .|.|......
T Consensus       237 ~v~~~~l~~~  246 (270)
T 3qib_D          237 QVQFYGLSEN  246 (270)
T ss_dssp             EEEECCBCTT
T ss_pred             EEEecCCCCc
Confidence            9999876543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.78  E-value=2.3e-18  Score=131.36  Aligned_cols=133  Identities=12%  Similarity=0.191  Sum_probs=100.1

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCC-CCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      .+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|+++|..+.....          .+.|.+++.+|+|.|+|.|.|
T Consensus         3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~   72 (170)
T 3ry4_A            3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQ   72 (170)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEETT
T ss_pred             CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEeC
Confidence            346677777777899999999999999887 578999999998875421          466789999999999999998


Q ss_pred             CCCceEEEEEEecC----CCCcc--------------------ceeEEeC---------CeEEEEEecCCCCCCeEEEEE
Q psy12422        267 SLGTAETKCKLTPL----NSSNI--------------------LDLKYKN---------GVASLQIQEVFPEDEGVYVCT  313 (356)
Q Consensus       267 ~~g~~~~~~~l~p~----~~~~~--------------------~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~  313 (356)
                      ........+.+...    ..+..                    ..+.|..         ....|.|.+++.+|+|.|+|.
T Consensus        73 ~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  152 (170)
T 3ry4_A           73 TSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCT  152 (170)
T ss_dssp             SBCCCCEEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESSCCEEEESSCCGGGCEEEEEE
T ss_pred             CCceEeEEEEEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccCCCCeEEEEeccccCCEEEEEE
Confidence            77766555555410    00000                    1344433         456899999999999999999


Q ss_pred             EEcCCcc-eEEEEEEEEE
Q psy12422        314 ATNSLGT-AETKCKLTVR  330 (356)
Q Consensus       314 a~n~~g~-~~~~~~l~V~  330 (356)
                      |.|..|. .+..+.|.|+
T Consensus       153 a~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          153 GNIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             EEETTEEEECCCEEEEEC
T ss_pred             EEeCcCccccccEEEEEC
Confidence            9999997 4446777664

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.77  E-value=4.7e-18  Score=137.38  Aligned_cols=73  Identities=11%  Similarity=0.109  Sum_probs=50.2

Q ss_pred             eeecCCCeEEEEEEEcCC-CC-CeEEEEECCE-EccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        199 KTIDDGQCLDLSAVVKGD-PE-PRVSWTKNGQ-PLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~-~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      ..+.+|+.++|.|.+.|. |. +.+.|+++|. .+...........++    .+.|.|..+.. | |.|+|.|.|..+..
T Consensus       142 ~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~  219 (242)
T 1hxm_B          142 AETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKN  219 (242)
T ss_dssp             GGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGG
T ss_pred             hhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCC
Confidence            346679999999999876 64 6899999986 553221000111111    24788887775 4 99999999999875


Q ss_pred             EE
Q psy12422        272 ET  273 (356)
Q Consensus       272 ~~  273 (356)
                      ..
T Consensus       220 ~~  221 (242)
T 1hxm_B          220 GV  221 (242)
T ss_dssp             GS
T ss_pred             Cc
Confidence            33

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.77  E-value=3.2e-18  Score=117.57  Aligned_cols=77  Identities=21%  Similarity=0.431  Sum_probs=69.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.|+|+|||+++...   ++.+...++..+|.|.+++.+|+|.|+|.|.|..|.++..+.|.|..
T Consensus        20 G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           20 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             TSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            789999999999999999999999999653   45566677778999999999999999999999999999999998863

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.77  E-value=1.1e-17  Score=156.65  Aligned_cols=146  Identities=18%  Similarity=0.270  Sum_probs=98.8

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEE-EE--ECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVS-WT--KNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~-W~--~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      .+|.+. .+.+..+.+|+++.|.|.+.|.|.|.+. |+  ++|..+.......+......+.|.|.++...|+|.|+|.|
T Consensus       164 ~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A  242 (731)
T 2v5y_A          164 RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI  242 (731)
T ss_dssp             SSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEE
T ss_pred             cccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEE
Confidence            345554 3456789999999999999999999987 88  6777664322111111112368999999999999999999


Q ss_pred             EcCCCc-eEEEEEEe----cCC--CCccc-------------------------eeEEe-----------CCeEEEEEec
Q psy12422        265 TNSLGT-AETKCKLT----PLN--SSNIL-------------------------DLKYK-----------NGVASLQIQE  301 (356)
Q Consensus       265 ~n~~g~-~~~~~~l~----p~~--~~~~~-------------------------~~~~~-----------~~~~~L~i~~  301 (356)
                      .|..|. ....+.+.    |..  .+.+.                         .+.+.           .....+.|.+
T Consensus       243 ~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~  322 (731)
T 2v5y_A          243 RTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGH  322 (731)
T ss_dssp             EETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEEECCSSEEEECS
T ss_pred             ECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEeccCcceEEEeC
Confidence            999997 44434443    111  11110                         11111           1235789999


Q ss_pred             CCCCCCeEEEEEEE--cCCcceEEEEEEEEEecCC
Q psy12422        302 VFPEDEGVYVCTAT--NSLGTAETKCKLTVRSTPA  334 (356)
Q Consensus       302 v~~~d~G~Y~C~a~--n~~g~~~~~~~l~V~~~p~  334 (356)
                      +...+...|+|.|.  |..|....+..+.+...+.
T Consensus       323 L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~  357 (731)
T 2v5y_A          323 LDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCA  357 (731)
T ss_dssp             CCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCC
T ss_pred             CCCCCEEEEEEEEEecCCCccccCCCcEEeeecCC
Confidence            99999999999999  9999876554455555443

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.77  E-value=4.1e-18  Score=140.80  Aligned_cols=167  Identities=20%  Similarity=0.302  Sum_probs=108.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--EEc--------------c----cCCeeEEe-cCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--REL--------------S----KRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~~l--------------~----~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      |++|+|.|.+.+.|.+.+.|||++  ...              .    ..++.... ..+..+|+|.+++.+|+|.|.|.
T Consensus        39 G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~  118 (279)
T 2wbj_D           39 GTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICS  118 (279)
T ss_dssp             TSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccCCEEEEEE
Confidence            789999999988888999999953  111              0    12333322 24567999999999999999999


Q ss_pred             EEeCCc------eeEEEEEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEE
Q psy12422         60 ATNKHG------TDETNCVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTT  133 (356)
Q Consensus        60 a~n~~g------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~  133 (356)
                      +.|..+      .....+.|.|.....                                                     
T Consensus       119 ~~~~~~~~~~~~~~~~~~~l~V~~~~~-----------------------------------------------------  145 (279)
T 2wbj_D          119 ARDLTSGANNEQFFGPGTRLTVTEDLK-----------------------------------------------------  145 (279)
T ss_dssp             EEETTCBTSCCEEECCCEEEEEESCGG-----------------------------------------------------
T ss_pred             EcccccCCccceeeCCCEEEEEecCCC-----------------------------------------------------
Confidence            998432      111223455442100                                                     


Q ss_pred             EEeeccccccccccccCCCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecc-cCCceeecCCCeEEEEEE
Q psy12422        134 QMSTLSSNYSSSTNNATSPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFAN-KLTDKTIDDGQCLDLSAV  212 (356)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~~~l~C~  212 (356)
                                                                          ...+|.+.. .+....+.+|+.++|.|.
T Consensus       146 ----------------------------------------------------~~~~P~v~~~~~~~~~~~~g~~v~L~C~  173 (279)
T 2wbj_D          146 ----------------------------------------------------NVFPPEVAVFEPSEAEISHTQKATLVCL  173 (279)
T ss_dssp             ----------------------------------------------------GCBCCEEEEEECCHHHHHHHSCCEEEEE
T ss_pred             ----------------------------------------------------CCCCCEEEEECCCcccccCCCceEEEEE
Confidence                                                                012333322 223334567999999999


Q ss_pred             EcCC-CC-CeEEEEECCEEccCCCcee---EE----EeCC----EEEEEEccCCCCC-CeEEEEEEEcCCCceE
Q psy12422        213 VKGD-PE-PRVSWTKNGQPLNSSNILD---LK----YKNG----VASLQIQEVFPED-EGVYVCTATNSLGTAE  272 (356)
Q Consensus       213 ~~g~-p~-p~i~W~~~g~~~~~~~~~~---~~----~~~~----~~~L~i~~v~~~d-~G~Y~C~a~n~~g~~~  272 (356)
                      +.|. |+ +.|.|++||..+.......   ..    ..++    .+.|.|......| .|.|+|+|.|......
T Consensus       174 ~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~  247 (279)
T 2wbj_D          174 ATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  247 (279)
T ss_dssp             EEEEBSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred             EeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence            9886 43 6899999999886542211   00    0111    2358888887765 7789999999876544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.76  E-value=3.1e-18  Score=133.84  Aligned_cols=130  Identities=14%  Similarity=0.157  Sum_probs=91.7

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.|...+.. .+.+|++++|.|.+.+.|. .+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A            3 LSKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             CCBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeC
Confidence            456777777664 7999999999999998766 9999999987653211 011234457899999999999999999999


Q ss_pred             CCCceE----EEEEEec-CCCCccc------------------------eeEEeC-------------------CeEEEE
Q psy12422        267 SLGTAE----TKCKLTP-LNSSNIL------------------------DLKYKN-------------------GVASLQ  298 (356)
Q Consensus       267 ~~g~~~----~~~~l~p-~~~~~~~------------------------~~~~~~-------------------~~~~L~  298 (356)
                      ..|...    ..+.+.. ...+.+.                        .+.|.+                   ....|.
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~  159 (196)
T 2d3v_A           80 PAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFP  159 (196)
T ss_dssp             TTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCCSEEEEEEC---CCEEEEECEECTTSCEEEEEE
T ss_pred             CCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCCCEEEEEccCCcccccccccccccCCCceeEEE
Confidence            876322    2333321 0011110                        333322                   126899


Q ss_pred             EecCCCCCCeEEEEEEEcCCc
Q psy12422        299 IQEVFPEDEGVYVCTATNSLG  319 (356)
Q Consensus       299 i~~v~~~d~G~Y~C~a~n~~g  319 (356)
                      |.+++.+|+|.|+|.|+|..+
T Consensus       160 I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          160 VGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             CCCCBTTBCEEEEEEEEETTE
T ss_pred             eeecCcccCeeEEEEEEccCC
Confidence            999999999999999999875

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.76  E-value=1.2e-18  Score=136.50  Aligned_cols=141  Identities=14%  Similarity=0.128  Sum_probs=96.0

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+. ..+.+|++++|.|.+.+.|. .+.|+|+|..+....... ........|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (198)
T 1ugn_A            3 LPKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYYGS   79 (198)
T ss_dssp             CCCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc-ccCCcccEEEECCCCHHHCeEEEEEEEC
Confidence            46678877665 47999999999999998876 699999998764211100 0011224899999999999999999999


Q ss_pred             CC-C--c--eEEEEEEec-CCCCccc------------------------eeEEeC-------------------CeEEE
Q psy12422        267 SL-G--T--AETKCKLTP-LNSSNIL------------------------DLKYKN-------------------GVASL  297 (356)
Q Consensus       267 ~~-g--~--~~~~~~l~p-~~~~~~~------------------------~~~~~~-------------------~~~~L  297 (356)
                      .. |  .  ....+.+.. ...+.+.                        .+.|.+                   ....|
T Consensus        80 ~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L  159 (198)
T 1ugn_A           80 DTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIF  159 (198)
T ss_dssp             TTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSCCSEEEEEEC------CEEEC------CCEEEE
T ss_pred             CCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCCCcEEEEEECCCccCCccccccccCCCcceeEE
Confidence            87 4  2  222333321 0011110                        333322                   13789


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcc-----eEEEEEEEEE
Q psy12422        298 QIQEVFPEDEGVYVCTATNSLGT-----AETKCKLTVR  330 (356)
Q Consensus       298 ~i~~v~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~  330 (356)
                      .|.+++.+|+|.|+|.|.|..+.     .+..+.|.|.
T Consensus       160 ~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          160 SVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             EecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            99999999999999999998763     2446677765

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.76  E-value=7.2e-18  Score=130.26  Aligned_cols=121  Identities=16%  Similarity=0.095  Sum_probs=88.5

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+.. .+.+|++++|.|.+.+ |.+.+.|+|+|...        ...  ...|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------~~~--~~~L~i~~v~~~D~G~Y~C~a~n   73 (184)
T 2gi7_A            6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------YQD--QAVLFIPAMKRSLAGRYRCSYQN   73 (184)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC--------EES--SSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------cCc--ccEEEECcCChhhCceEEEEEEc
Confidence            567888777764 7999999999999988 88899999988651        112  23899999999999999999999


Q ss_pred             CCCc----eEEEEEEec-CCCCccc------------------------eeEEeC-------------CeEEEEEecCCC
Q psy12422        267 SLGT----AETKCKLTP-LNSSNIL------------------------DLKYKN-------------GVASLQIQEVFP  304 (356)
Q Consensus       267 ~~g~----~~~~~~l~p-~~~~~~~------------------------~~~~~~-------------~~~~L~i~~v~~  304 (356)
                      ..|.    ....+.+.. ...+.+.                        .+.|.+             ....|.|.+++.
T Consensus        74 ~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~  153 (184)
T 2gi7_A           74 GSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTA  153 (184)
T ss_dssp             TTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCCCEEEEEECCCCTTSCCCCEEEEESSSEEEETT
T ss_pred             CCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCCcEEEEEECCCcCcceecCCCceEEEEEccCCc
Confidence            7652    223333320 1111110                        344432             246799999999


Q ss_pred             CCCeEEEEEEEcCCc
Q psy12422        305 EDEGVYVCTATNSLG  319 (356)
Q Consensus       305 ~d~G~Y~C~a~n~~g  319 (356)
                      +|+|.|+|.|.|..+
T Consensus       154 ~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          154 AHSGTYRCYSFSSRD  168 (184)
T ss_dssp             CCSEEEEEEEECTTS
T ss_pred             cCCeEEEEEEEeCCC
Confidence            999999999999865

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.75  E-value=2.9e-17  Score=126.93  Aligned_cols=125  Identities=22%  Similarity=0.356  Sum_probs=91.0

Q ss_pred             eeecCCCeEEEEEEEcCCCCC--eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEP--RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ..+.+|+++.|.|.+.+.|.|  .+.|+++|..+......     .....|.|.  +.+|+|.|+|.|.|... ....+.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~~~-~~~~l~   79 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPEPM-GTANIQ   79 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEESTTS-CEEEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECCcC-cEEEEE
Confidence            468899999999999988877  89999999888755422     223467776  68899999999998433 333333


Q ss_pred             Ee--cC-----------------------CCCccceeEEeC-----------------------CeEEEEEecCC-CCCC
Q psy12422        277 LT--PL-----------------------NSSNILDLKYKN-----------------------GVASLQIQEVF-PEDE  307 (356)
Q Consensus       277 l~--p~-----------------------~~~~~~~~~~~~-----------------------~~~~L~i~~v~-~~d~  307 (356)
                      +.  |.                       ..+....+.|..                       ....|.|.+++ .+|+
T Consensus        80 V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~  159 (184)
T 3b5h_A           80 LHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP  159 (184)
T ss_dssp             ECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSS
T ss_pred             EecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccC
Confidence            33  11                       000001333432                       12489999999 9999


Q ss_pred             eEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        308 GVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       308 G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                      |.|+|.|.|..|.....+.|.|+.
T Consensus       160 G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          160 GQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             ceEEEEEEeCCCcceEEEEEEEec
Confidence            999999999999999999999875

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.75  E-value=3e-18  Score=139.49  Aligned_cols=71  Identities=20%  Similarity=0.311  Sum_probs=50.6

Q ss_pred             eecCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeEEE-------eCC----EEEEEEccCCCCC-CeEEEEEEE
Q psy12422        200 TIDDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDLKY-------KNG----VASLQIQEVFPED-EGVYVCTAT  265 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~~~-------~~~----~~~L~i~~v~~~d-~G~Y~C~a~  265 (356)
                      .+..|+.++|.|.+.| +|++ .+.|+++|..+..........       .++    .+.|.|.....+| .|.|+|.|.
T Consensus       135 ~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~  214 (253)
T 3to4_D          135 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ  214 (253)
T ss_dssp             HHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEE
T ss_pred             hcccCCceEEEEEEceEECCcEEEEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEE
Confidence            3446789999999988 6766 799999999886532211000       111    1478888888888 779999999


Q ss_pred             cCCCc
Q psy12422        266 NSLGT  270 (356)
Q Consensus       266 n~~g~  270 (356)
                      |..-.
T Consensus       215 h~~l~  219 (253)
T 3to4_D          215 FYGLS  219 (253)
T ss_dssp             ECCBC
T ss_pred             eCCCC
Confidence            97643

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.75  E-value=1.6e-17  Score=133.95  Aligned_cols=72  Identities=22%  Similarity=0.320  Sum_probs=48.4

Q ss_pred             eeecCCCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCcee---EEEeCCE----EEEEEccCCCCC-CeEEEEEEEcCC
Q psy12422        199 KTIDDGQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNILD---LKYKNGV----ASLQIQEVFPED-EGVYVCTATNSL  268 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~~---~~~~~~~----~~L~i~~v~~~d-~G~Y~C~a~n~~  268 (356)
                      ..+.+|+.++|.|.+.|. |.+ .+.|++||..+.......   ....++.    +.|.|......| .|.|+|.|.|..
T Consensus       131 ~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          131 AEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             TTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred             HHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence            346689999999999885 655 899999999886543211   2222332    234555444444 678999999985


Q ss_pred             Cc
Q psy12422        269 GT  270 (356)
Q Consensus       269 g~  270 (356)
                      ..
T Consensus       211 l~  212 (238)
T 1bec_A          211 LS  212 (238)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.75  E-value=4.1e-18  Score=130.47  Aligned_cols=129  Identities=19%  Similarity=0.285  Sum_probs=92.3

Q ss_pred             ceeecCCCeEEEEEEEcC--CCCCeEEEEECCEEcc----------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKG--DPEPRVSWTKNGQPLN----------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g--~p~p~i~W~~~g~~~~----------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      .+.+.+|+++.|.|....  .|.+.|.|+|++..+.          ...++.+ ..++  .|.|.+++.+|+|.|+|.|.
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~-~~~g--sL~I~~v~~~D~G~Y~C~~~   81 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI-LANG--DLKIKNLTRDDSGTYNVTVY   81 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE-CTTS--CEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE-CCCC--cEEEcccccccCEEEEEEEE
Confidence            356889999999995422  5567899999996542          2233333 1222  59999999999999999999


Q ss_pred             cCCCce--EEEEEEecC---CCCccc------------------eeEEeCCeE------EEEEecCCCCCCeEEEEEEEc
Q psy12422        266 NSLGTA--ETKCKLTPL---NSSNIL------------------DLKYKNGVA------SLQIQEVFPEDEGVYVCTATN  316 (356)
Q Consensus       266 n~~g~~--~~~~~l~p~---~~~~~~------------------~~~~~~~~~------~L~i~~v~~~d~G~Y~C~a~n  316 (356)
                      |..|..  ...+.|...   ..|.+.                  .+.|..++.      .+.|..++.+|+|.|+|.|.|
T Consensus        82 n~~g~~~~~~~~~l~V~~~~~~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~~~i~~~~~~d~G~Y~C~a~N  161 (176)
T 1hng_A           82 STNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVN  161 (176)
T ss_dssp             ETTCCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSCEEEEEEE
T ss_pred             eCCCCEEEEEEEEEEEeCCCCCCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCcEEEEEEEccCCeEEEEEEEe
Confidence            999986  555555421   111111                  566665332      356778889999999999999


Q ss_pred             CCcceEEEEEEEE
Q psy12422        317 SLGTAETKCKLTV  329 (356)
Q Consensus       317 ~~g~~~~~~~l~V  329 (356)
                      .+|..++.+.|.+
T Consensus       162 ~~g~~~~~~~l~~  174 (176)
T 1hng_A          162 RVSQESEMEVVNC  174 (176)
T ss_dssp             TTEEEEEEECCCC
T ss_pred             cCCCceecccccC
Confidence            9999988877654

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.75  E-value=3.2e-18  Score=135.78  Aligned_cols=144  Identities=10%  Similarity=0.015  Sum_probs=96.0

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEE--EEEEccCCCCCCeEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA--SLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ..+|.|...+. ..+.+|++++|.|.+.+ |.+.+.|+|+|..+...... ........  .|.|.+++.+|+|.|+|.|
T Consensus         7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   83 (218)
T 1uct_A            7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQY   83 (218)
T ss_dssp             SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEEEEE
Confidence            56677877766 47999999999999987 67899999988655422110 00112234  8999999999999999999


Q ss_pred             EcCCCceE----EEEEEec-CCCCcc-------------------------ceeEEeC-------------CeEEEEEec
Q psy12422        265 TNSLGTAE----TKCKLTP-LNSSNI-------------------------LDLKYKN-------------GVASLQIQE  301 (356)
Q Consensus       265 ~n~~g~~~----~~~~l~p-~~~~~~-------------------------~~~~~~~-------------~~~~L~i~~  301 (356)
                      .|..|...    ..+.+.. ...+.+                         ..+.|.+             ....|.|.+
T Consensus        84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~  163 (218)
T 1uct_A           84 RIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGP  163 (218)
T ss_dssp             EETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCS
T ss_pred             EcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEcc
Confidence            99876322    2222220 011111                         0344432             357899999


Q ss_pred             CCCCCCeEEEEEEEcCCc-----ceEEEEEEEEEecC
Q psy12422        302 VFPEDEGVYVCTATNSLG-----TAETKCKLTVRSTP  333 (356)
Q Consensus       302 v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~p  333 (356)
                      |+.+|+|.|+|.|+|..+     ..+..+.|.|.+.+
T Consensus       164 v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          164 VDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             CCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred             CCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence            999999999999998642     23457788888764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.75  E-value=2.3e-17  Score=116.68  Aligned_cols=92  Identities=22%  Similarity=0.359  Sum_probs=83.1

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.|...+..+.+.+|+.+.|.|.+.|+|.|.+.|+++|..+....++.+........|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A            5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence            56788888888899999999999999999999999999999999877777777666678999999999999999999999


Q ss_pred             CCCceEEEEEEe
Q psy12422        267 SLGTAETKCKLT  278 (356)
Q Consensus       267 ~~g~~~~~~~l~  278 (356)
                      ..|.....+.|.
T Consensus        85 ~~g~~~~~~~l~   96 (114)
T 2cqv_A           85 KLGSRQAQVNLT   96 (114)
T ss_dssp             SSCEEECCEEEE
T ss_pred             CCCcEEEEEEEE
Confidence            999988877777

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.75  E-value=6.3e-18  Score=133.34  Aligned_cols=138  Identities=17%  Similarity=0.204  Sum_probs=94.3

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee-----------------EEEeCCEEEEEEccCCCCCCeE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD-----------------LKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~-----------------~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      ....+.+|+++.|.|.+.+.|.+.+.|++++..........                 .... ....|.|.+++.+|+|.
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~-~~~~L~i~~v~~~D~G~   85 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-SNGSLLFQMITMKDMGV   85 (208)
T ss_dssp             ESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC-TTSCEEECSCCGGGCEE
T ss_pred             ccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe-cCCeEEEccccccCCeE
Confidence            34578899999999999888999999999754322111000                 0001 11369999999999999


Q ss_pred             EEEEEEcCC-CceEEEEEEecC---CCCccc-----------------------eeEEeC---------------CeEEE
Q psy12422        260 YVCTATNSL-GTAETKCKLTPL---NSSNIL-----------------------DLKYKN---------------GVASL  297 (356)
Q Consensus       260 Y~C~a~n~~-g~~~~~~~l~p~---~~~~~~-----------------------~~~~~~---------------~~~~L  297 (356)
                      |+|.+.|.. +.....+.|...   ..+.+.                       .+.|..               .+..|
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~pp~i~W~~~g~~l~~~~~~~~~~~~~~L  165 (208)
T 3r4d_A           86 YTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSIL  165 (208)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTTCEEEEEETTEECCCCSSEEEETTTTEE
T ss_pred             EEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCCCceEEEECCEeCCCCCCeEEcCCCCEE
Confidence            999999985 444444444411   101110                       344432               33679


Q ss_pred             EEecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEecCCC
Q psy12422        298 QIQEVFPEDEGVYVCTATNSLGTAET-KCKLTVRSTPAA  335 (356)
Q Consensus       298 ~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~  335 (356)
                      .|.+++.+|+|.|+|.|.|..|...+ .++|.|..+|.-
T Consensus       166 ~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          166 RIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH  204 (208)
T ss_dssp             EESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred             EEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence            99999999999999999999998776 889999888763

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.75  E-value=1.1e-18  Score=137.69  Aligned_cols=139  Identities=21%  Similarity=0.358  Sum_probs=98.3

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEc------------cCCCceeEEEeCCEEEEEEccCCCC
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL------------NSSNILDLKYKNGVASLQIQEVFPE  255 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~  255 (356)
                      .++.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+            ....++.  ...  ..|.|.+++.+
T Consensus         3 ~~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~--~~L~i~~~~~~   78 (209)
T 1nbq_A            3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT--FLP--TGITFKSVTRE   78 (209)
T ss_dssp             CCCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCE--EET--TEEECSCCCTT
T ss_pred             ceEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceE--eec--cEEEEeeCCHH
Confidence            3456666677888999999999999999999999999976542            1112222  222  48999999999


Q ss_pred             CCeEEEEEEEcCCCce--EEEEEEecCCCCcc---------------------------ceeEEeC--------------
Q psy12422        256 DEGVYVCTATNSLGTA--ETKCKLTPLNSSNI---------------------------LDLKYKN--------------  292 (356)
Q Consensus       256 d~G~Y~C~a~n~~g~~--~~~~~l~p~~~~~~---------------------------~~~~~~~--------------  292 (356)
                      |+|.|+|.|.|..|..  ...+.+.....+.+                           ..+.|..              
T Consensus        79 d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~  158 (209)
T 1nbq_A           79 DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRA  158 (209)
T ss_dssp             SCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSS
T ss_pred             HCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcccccee
Confidence            9999999999986632  23333331111100                           0344432              


Q ss_pred             ----------CeEEEEEecCCCCCCeEEEEEEEcCCcceE--EEEEEEEE
Q psy12422        293 ----------GVASLQIQEVFPEDEGVYVCTATNSLGTAE--TKCKLTVR  330 (356)
Q Consensus       293 ----------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~  330 (356)
                                ..+.|.|.+++.+|+|.|+|.|.|..|...  ..+.|.|+
T Consensus       159 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          159 FSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             CTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             eeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence                      235899999999999999999999999984  45555554

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.75  E-value=2e-17  Score=128.26  Aligned_cols=140  Identities=11%  Similarity=0.040  Sum_probs=94.8

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .+|.+...+.. .+.+|++++|.|.+.+ +++.+.|+|+|..+...... .........|.|.+++.+|+|.|+|.+.|.
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   79 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc-cCCCcceeEEEeCcCCcccCeEEEEEecCC
Confidence            46777777766 7999999999999975 45789999999876421100 011234568999999999999999999886


Q ss_pred             CCc----eEEEEEEe-cCCCCccc------------------------eeEEe-------------CCeEEEEEecCCCC
Q psy12422        268 LGT----AETKCKLT-PLNSSNIL------------------------DLKYK-------------NGVASLQIQEVFPE  305 (356)
Q Consensus       268 ~g~----~~~~~~l~-p~~~~~~~------------------------~~~~~-------------~~~~~L~i~~v~~~  305 (356)
                      .+.    ....+.+. +...+.+.                        .+.|.             .....|.|.+|+.+
T Consensus        80 ~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~  159 (188)
T 1oll_A           80 ELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTA  159 (188)
T ss_dssp             TEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSSSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGG
T ss_pred             CCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCCCCCEEEEEECCccccccccCCCceeEEEECCCCcC
Confidence            442    22233332 00011110                        23332             24578999999999


Q ss_pred             CCeEEEEEEEcCCc---ceEEEEEEEEE
Q psy12422        306 DEGVYVCTATNSLG---TAETKCKLTVR  330 (356)
Q Consensus       306 d~G~Y~C~a~n~~g---~~~~~~~l~V~  330 (356)
                      |+|.|+|.|+|...   ..+..+.|.|.
T Consensus       160 d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          160 HRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             GCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             CCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            99999999998752   23446777775

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.74  E-value=1e-17  Score=134.56  Aligned_cols=91  Identities=13%  Similarity=0.212  Sum_probs=55.5

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCC--CeEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPE--PRVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C  262 (356)
                      +|.+........+..|+.++|.|.+.+.++  ..+.|+++|..+...........++    .+.|.|......| |.|+|
T Consensus       132 ~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC  210 (232)
T 3qhz_H          132 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC  210 (232)
T ss_dssp             CCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEE
T ss_pred             CCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEE
Confidence            344442222334567999999999987544  3588999886432111000111111    2478999999889 99999


Q ss_pred             EEEcCCCceEEEEEEecC
Q psy12422        263 TATNSLGTAETKCKLTPL  280 (356)
Q Consensus       263 ~a~n~~g~~~~~~~l~p~  280 (356)
                      .|.|..+.......+.+.
T Consensus       211 ~v~~~~~~~~~~~~l~~~  228 (232)
T 3qhz_H          211 NVNHKPSNTKVDKRVEPK  228 (232)
T ss_dssp             EEEEGGGTEEEEEECCCC
T ss_pred             EEEeCCCCccEEEEeCCC
Confidence            999999888887777654

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.74  E-value=1.1e-17  Score=134.79  Aligned_cols=90  Identities=17%  Similarity=0.308  Sum_probs=57.6

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C  262 (356)
                      +|.+...+....+.+|+.++|.|.+.+ +|++ .+.|+++|..+...........++    .+.|.|.....+| |.|+|
T Consensus       140 ~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC  218 (239)
T 3tv3_H          140 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC  218 (239)
T ss_dssp             CCEEEEECCCCCC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEE
T ss_pred             CCEEEEECCChhhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEE
Confidence            344443333334567999999999977 5544 488999886432111101111111    2478999999899 99999


Q ss_pred             EEEcCCCceEEEEEEec
Q psy12422        263 TATNSLGTAETKCKLTP  279 (356)
Q Consensus       263 ~a~n~~g~~~~~~~l~p  279 (356)
                      .|.|..+.......+.+
T Consensus       219 ~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          219 NVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             EEEEGGGTEEEEEECCC
T ss_pred             EEEECCCCceEEEEecc
Confidence            99999988777776654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.74  E-value=5.1e-18  Score=131.26  Aligned_cols=117  Identities=21%  Similarity=0.337  Sum_probs=87.6

Q ss_pred             eecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEcc-CCCCCCeEEEEEEEcCCCceEEEEEEe
Q psy12422        200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQE-VFPEDEGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      ...+|+++.|.|.+.+ |+ .|.|+|+|..+....       +  .+|.|.+ ++.+|+|.|+|.|.|..|.....+.+.
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~-------~--~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH-------D--KHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSCC-------C--SEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC-------C--CEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            3467999999999987 44 499999999887541       1  2799999 999999999999999988755444442


Q ss_pred             cC--CCC-------------------------------c---------------cceeEEeC----------CeEEEEEe
Q psy12422        279 PL--NSS-------------------------------N---------------ILDLKYKN----------GVASLQIQ  300 (356)
Q Consensus       279 p~--~~~-------------------------------~---------------~~~~~~~~----------~~~~L~i~  300 (356)
                      +.  ..+                               .               ...+.|.+          ....|.|.
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~p~p~i~W~k~g~~i~~~~~~~~~L~i~  158 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLG  158 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSSSCSCEEEEETTEECCCSSCCSSCCEEE
T ss_pred             EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeCCCCeEEEEECCEECcccCCCcceEEEC
Confidence            00  000                               0               00445543          34679999


Q ss_pred             cCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy12422        301 EVFPEDEGVYVCTATNSLGTAETKCKLTVRST  332 (356)
Q Consensus       301 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  332 (356)
                      +++.+|+|.|+|.|.|..|..     |+|.++
T Consensus       159 ~v~~~D~G~Y~C~a~N~~g~~-----l~V~yr  185 (186)
T 1jbj_A          159 NNAKDPRGTYQCQGAKETSNP-----LQVYYR  185 (186)
T ss_dssp             ETTSCCEEEEEEEESSCEEEE-----EEEECC
T ss_pred             CCCcCcCEEEEEEEEcCcCCc-----EEEEEe
Confidence            999999999999999998876     666654

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.74  E-value=7.1e-16  Score=120.53  Aligned_cols=141  Identities=18%  Similarity=0.324  Sum_probs=101.3

Q ss_pred             CCceEEEEEe-ccCC---CCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVG-STKP---PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~-~g~p---~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+.++|+|.+ .|.|   +..++|||||.++....         ..|.|..+...|+|.|+|.+.+..|.......+.|.
T Consensus        17 GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT---------~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT   87 (304)
T 3shs_A           17 GDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLM   87 (304)
T ss_dssp             TCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS---------SEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEEE
T ss_pred             CCCEEEEEEecCCCCCCCCceEEEEECCccccCCc---------ceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEEe
Confidence            7899999998 5667   45799999999876321         178899999999999999999988876544333333


Q ss_pred             ccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCccce
Q psy12422         77 SEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPSKKI  156 (356)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      ....                                                                            
T Consensus        88 ~~a~----------------------------------------------------------------------------   91 (304)
T 3shs_A           88 EEAE----------------------------------------------------------------------------   91 (304)
T ss_dssp             CBCC----------------------------------------------------------------------------
T ss_pred             ccCc----------------------------------------------------------------------------
Confidence            2100                                                                            


Q ss_pred             eeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEE--c-CCC-----CCeEEEEECCE
Q psy12422        157 TRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVV--K-GDP-----EPRVSWTKNGQ  228 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~--~-g~p-----~p~i~W~~~g~  228 (356)
                                          ..+.+            ..+....+..|..+.|.+.+  . |.|     ...++|++|+.
T Consensus        92 --------------------l~i~i------------t~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt  139 (304)
T 3shs_A           92 --------------------LIVNI------------TEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGED  139 (304)
T ss_dssp             --------------------EEEEE------------SSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTE
T ss_pred             --------------------eeEEe------------cCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCe
Confidence                                00000            11223345567788888887  4 455     45899999998


Q ss_pred             EccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        229 PLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      .+....           .|++...+..++|.|+|++.|..+
T Consensus       140 ~IsgAq-----------~lT~sS~TateaG~YtV~VTn~~~  169 (304)
T 3shs_A          140 VIDTTQ-----------DITIQEFTADKNGVYTVKVWGESE  169 (304)
T ss_dssp             EEESSS-----------EEEECSCCGGGCEEEEEEEESSSG
T ss_pred             EccCcc-----------ccceeeEEecCCeEEEEEEEcCCC
Confidence            775332           678888899999999999999977

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.73  E-value=3.1e-17  Score=113.80  Aligned_cols=94  Identities=24%  Similarity=0.403  Sum_probs=84.6

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+....++.+.......+|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   85 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTN   85 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEe
Confidence            45678888888899999999999999999999999999999999888887777777888999999999999999999999


Q ss_pred             CCCceEEEEEEecC
Q psy12422        267 SLGTAETKCKLTPL  280 (356)
Q Consensus       267 ~~g~~~~~~~l~p~  280 (356)
                      ..|.....+.|...
T Consensus        86 ~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           86 YKGEASDYATLDVT   99 (103)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            99999888877643

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.73  E-value=1.4e-17  Score=135.28  Aligned_cols=134  Identities=19%  Similarity=0.316  Sum_probs=91.0

Q ss_pred             cCCceeecCCCeEEEEEEEcC---CCCCeEEEEECCEEcc------------------------------CCCceeEEEe
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKG---DPEPRVSWTKNGQPLN------------------------------SSNILDLKYK  241 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g---~p~p~i~W~~~g~~~~------------------------------~~~~~~~~~~  241 (356)
                      ++..+.+.+|+++.|.|.+.+   .|.+.+.|++++....                              ...+..+.. 
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-   86 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-   86 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC-
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc-
Confidence            345678999999999999987   8889999999874421                              001111110 


Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEcCCCce-----EEEEEEecCCC---Cccc---------------------------
Q psy12422        242 NGVASLQIQEVFPEDEGVYVCTATNSLGTA-----ETKCKLTPLNS---SNIL---------------------------  286 (356)
Q Consensus       242 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-----~~~~~l~p~~~---~~~~---------------------------  286 (356)
                      .+...|.|.+++.+|+|.|+|.|.|..+..     ...+.|.....   +.+.                           
T Consensus        87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p  166 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA  166 (250)
T ss_dssp             TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC
T ss_pred             CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC
Confidence            123479999999999999999999988753     33455542111   1110                           


Q ss_pred             eeEEeC--------------------------------------CeEEEEEecCCCCCCeEEEEEEEcCCc---ceEEEE
Q psy12422        287 DLKYKN--------------------------------------GVASLQIQEVFPEDEGVYVCTATNSLG---TAETKC  325 (356)
Q Consensus       287 ~~~~~~--------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g---~~~~~~  325 (356)
                      .+.|.+                                      ....|.|.+++.+|+|.|+|.|.|..|   ....++
T Consensus       167 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~  246 (250)
T 2fbo_J          167 NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST  246 (250)
T ss_dssp             EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEE
T ss_pred             eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeE
Confidence            333432                                      115899999999999999999999555   555555


Q ss_pred             EEEE
Q psy12422        326 KLTV  329 (356)
Q Consensus       326 ~l~V  329 (356)
                      .|.|
T Consensus       247 ~l~V  250 (250)
T 2fbo_J          247 ILKV  250 (250)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            5543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.73  E-value=2.1e-17  Score=131.09  Aligned_cols=137  Identities=12%  Similarity=0.141  Sum_probs=94.0

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCe---EEEEECCEEccCCCceeE----------------E-----EeCCEEEEEEcc
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPR---VSWTKNGQPLNSSNILDL----------------K-----YKNGVASLQIQE  251 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~---i~W~~~g~~~~~~~~~~~----------------~-----~~~~~~~L~i~~  251 (356)
                      +..+++.+|++++|.|.+.+.|.+.   |.|+|++..+........                .     ......+|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            3567899999999999999888764   899997754432111100                0     011235799999


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEEEe---cCCCCcc-------------------------ceeEEeC-----------
Q psy12422        252 VFPEDEGVYVCTATNSLGTAETKCKLT---PLNSSNI-------------------------LDLKYKN-----------  292 (356)
Q Consensus       252 v~~~d~G~Y~C~a~n~~g~~~~~~~l~---p~~~~~~-------------------------~~~~~~~-----------  292 (356)
                      ++.+|+|.|.|.+.|..+.........   +......                         ..+.|..           
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~  165 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSF  165 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceE
Confidence            999999999999998776544332222   0000000                         0344432           


Q ss_pred             -------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy12422        293 -------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST  332 (356)
Q Consensus       293 -------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  332 (356)
                             ..+.|.|..+..+|+|.|+|.|+|..|..+..++|.|...
T Consensus       166 ~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V~  212 (218)
T 4frw_A          166 KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHVS  212 (218)
T ss_dssp             ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCEE
T ss_pred             ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEEC
Confidence                   1357999999999999999999999998888777776543

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.72  E-value=3.4e-17  Score=129.66  Aligned_cols=134  Identities=16%  Similarity=0.247  Sum_probs=93.3

Q ss_pred             ecccCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCC
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~  257 (356)
                      +...+ .+.+.+|++++|.|.+.+.|.+.+.|+|  ++....            ...++......+...|.|.+++.+|+
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDE   82 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhC
Confidence            44444 6789999999999999999999999998  222111            22345544566778999999999999


Q ss_pred             eEEEEEEEcCCCc-----eEEEEEEe--cCCCCcc----------------------------ceeEEeCC---------
Q psy12422        258 GVYVCTATNSLGT-----AETKCKLT--PLNSSNI----------------------------LDLKYKNG---------  293 (356)
Q Consensus       258 G~Y~C~a~n~~g~-----~~~~~~l~--p~~~~~~----------------------------~~~~~~~~---------  293 (356)
                      |.|.|.|.|..+.     ....+.+.  +..+|.+                            ..+.|.++         
T Consensus        83 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~  162 (213)
T 3mj8_L           83 ADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVK  162 (213)
T ss_dssp             EEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             EEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcc
Confidence            9999999999872     11222222  1011111                            13444321         


Q ss_pred             -------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy12422        294 -------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  326 (356)
Q Consensus       294 -------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  326 (356)
                                   .+.|+|.++..+|+|.|+|.|+|..+..+..+.
T Consensus       163 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          163 TTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             ECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred             cCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence                         134889999999999999999999877666554

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.72  E-value=4.1e-17  Score=110.84  Aligned_cols=88  Identities=22%  Similarity=0.331  Sum_probs=75.6

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECC--EEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNG--QPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g--~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      +|.|...+....+.+|+.+.|.|.+.|+|.|.+.|+++|  ..+....  ..........|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            567776778889999999999999999999999999999  7776543  334456668999999999999999999999


Q ss_pred             CCCceEEEEEEe
Q psy12422        267 SLGTAETKCKLT  278 (356)
Q Consensus       267 ~~g~~~~~~~l~  278 (356)
                      ..|....++.|.
T Consensus        80 ~~G~~~~~~~l~   91 (93)
T 1wit_A           80 ELGEDEAIFEVI   91 (93)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCCeEEEEEEEE
Confidence            999988887775

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.72  E-value=8.7e-17  Score=128.79  Aligned_cols=71  Identities=15%  Similarity=0.150  Sum_probs=49.7

Q ss_pred             ceeecCCCeEEEEEEEcCC-CC-CeEEEEE-CCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        198 DKTIDDGQCLDLSAVVKGD-PE-PRVSWTK-NGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~-p~-p~i~W~~-~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ...+.+|+.++|.|.+.|. |. +.|.|++ ||..+...........++    .+.|.|..... + |.|+|.|.|..+.
T Consensus       139 ~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          139 VAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             HHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             chhhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            3446678999999999875 75 5899999 887664321111112222    24689988876 4 9999999998875

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=1.1e-16  Score=113.88  Aligned_cols=95  Identities=19%  Similarity=0.342  Sum_probs=79.7

Q ss_pred             CCCCeecc---cCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEE
Q psy12422        187 MTPPQFAN---KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       187 ~~~p~~~~---~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      ..+|.+..   ......+.+|+.+.|.|.+.|+|.|.+.|+++|..+. ..++.+........|.|.+++.+|+|.|+|.
T Consensus        19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   97 (118)
T 2e7c_A           19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELS   97 (118)
T ss_dssp             SEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred             ccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEE
Confidence            55677754   2467889999999999999999999999999999987 4455556666677899999999999999999


Q ss_pred             EEcCCCceEEEEEEecCCC
Q psy12422        264 ATNSLGTAETKCKLTPLNS  282 (356)
Q Consensus       264 a~n~~g~~~~~~~l~p~~~  282 (356)
                      |.|..|.....+.|.+...
T Consensus        98 a~N~~G~~~~~~~l~V~~~  116 (118)
T 2e7c_A           98 VQIENMKDTATIRIRVVEK  116 (118)
T ss_dssp             EECSSCEECCEEEEEEECC
T ss_pred             EEeCCCeEEEEEEEEEEcC
Confidence            9999998888888775443

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.72  E-value=5.7e-17  Score=109.56  Aligned_cols=81  Identities=17%  Similarity=0.186  Sum_probs=72.6

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.|...+.+..+.+|+++.|.|.+.+ |+|.+.|+|||..+....++.+..++...+|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            45788888888999999999999999986 55889999999999988888888888888999999999999999999988


Q ss_pred             CC
Q psy12422        267 SL  268 (356)
Q Consensus       267 ~~  268 (356)
                      ..
T Consensus        82 ~~   83 (93)
T 1waa_A           82 TK   83 (93)
T ss_dssp             EE
T ss_pred             Cc
Confidence            54

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.72  E-value=1.1e-16  Score=128.81  Aligned_cols=144  Identities=10%  Similarity=0.062  Sum_probs=97.8

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   81 (242)
T 1p6f_A            5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRV   81 (242)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEec
Confidence            566888777766 7999999999999975 4568999999987642100 001122356899999999999999999988


Q ss_pred             CCC----ceEEEEEEe-cCCCCccc------------------------eeEEe-------------CCeEEEEEecCCC
Q psy12422        267 SLG----TAETKCKLT-PLNSSNIL------------------------DLKYK-------------NGVASLQIQEVFP  304 (356)
Q Consensus       267 ~~g----~~~~~~~l~-p~~~~~~~------------------------~~~~~-------------~~~~~L~i~~v~~  304 (356)
                      ..+    +....+.+. +...+.+.                        .+.|.             .....|.|.+|+.
T Consensus        82 ~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~  161 (242)
T 1p6f_A           82 GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTT  161 (242)
T ss_dssp             TTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTSCSEEEEEECSSSCEEEEEECSSEEEEEEEECCG
T ss_pred             CCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCCCCEEEEEECCCccCccccCCCceEEEEeCCCcc
Confidence            643    222333332 00011110                        33332             2457899999999


Q ss_pred             CCCeEEEEEEEcCC---cceEEEEEEEEEecC
Q psy12422        305 EDEGVYVCTATNSL---GTAETKCKLTVRSTP  333 (356)
Q Consensus       305 ~d~G~Y~C~a~n~~---g~~~~~~~l~V~~~p  333 (356)
                      +|+|.|+|.|+|..   ...+..+.|.|.+++
T Consensus       162 ~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~  193 (242)
T 1p6f_A          162 AHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI  193 (242)
T ss_dssp             GGCEEEEEEEEEETTEECCCCCCEEEEEEC--
T ss_pred             ccCEEEEEEEECCCCcccCCCCCEEEEEeccC
Confidence            99999999999974   234557889998864

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.71  E-value=3.5e-17  Score=108.03  Aligned_cols=72  Identities=25%  Similarity=0.393  Sum_probs=60.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.+ |.|.|+|||||++|..+ ++.+...++..+|.|.+++.+|+|.|+|.|.|    ...++.|.|.+
T Consensus        11 G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~l~V~e   83 (84)
T 2lu7_A           11 GGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFLVSVEE   83 (84)
T ss_dssp             TSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEEEEECC
T ss_pred             CCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEEEEEEC
Confidence            899999999966 89999999999999765 45566677778999999999999999999844    45667787764

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.71  E-value=1e-16  Score=110.28  Aligned_cols=92  Identities=29%  Similarity=0.577  Sum_probs=82.9

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....++.+....+...|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n   83 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN   83 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEe
Confidence            45677777788889999999999999999999999999999999888888877777888999999999999999999999


Q ss_pred             CCCceEEEEEEe
Q psy12422        267 SLGTAETKCKLT  278 (356)
Q Consensus       267 ~~g~~~~~~~l~  278 (356)
                      ..|.....+.|.
T Consensus        84 ~~g~~~~~~~l~   95 (99)
T 3puc_A           84 SAGSVSSSCKLT   95 (99)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCCcEeEEEEEE
Confidence            999988887775

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.71  E-value=1e-16  Score=110.30  Aligned_cols=93  Identities=25%  Similarity=0.424  Sum_probs=80.2

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEE-EeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK-YKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+......... ...+...|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (99)
T 1g1c_A            3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   82 (99)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEE
Confidence            34677777788889999999999999999999999999999999876655433 35667799999999999999999999


Q ss_pred             cCCCceEEEEEEec
Q psy12422        266 NSLGTAETKCKLTP  279 (356)
Q Consensus       266 n~~g~~~~~~~l~p  279 (356)
                      |..|....++.|.+
T Consensus        83 N~~g~~~~~~~l~V   96 (99)
T 1g1c_A           83 NIAGETSSHAFLLV   96 (99)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCcEEEEEEEEE
Confidence            99999888877753

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=8e-17  Score=114.62  Aligned_cols=79  Identities=23%  Similarity=0.234  Sum_probs=70.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|.|.|.++|+|+|..+...++.+...++...|+|.+++.+|+|.|+|.|.|..|.....+.|.|.+.+
T Consensus        39 G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           39 GEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             SSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred             CCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence            7899999999999999999999999998556666667777789999999999999999999999999999999987653

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=7e-17  Score=110.85  Aligned_cols=89  Identities=28%  Similarity=0.384  Sum_probs=76.7

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.|...+.+..+.+|+++.|.|.+  .|.|.+.|+|||..+....++.+..++....|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A            5 SSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             SCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             CCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence            456788888889999999999999999  899999999999999988888888778788999999999999999999999


Q ss_pred             CCCceEEEEEE
Q psy12422        267 SLGTAETKCKL  277 (356)
Q Consensus       267 ~~g~~~~~~~l  277 (356)
                      ......+.+.+
T Consensus        83 ~~~~~~a~L~V   93 (100)
T 2yuz_A           83 YNVTLPAKVHV   93 (100)
T ss_dssp             SCCCEEEEEEE
T ss_pred             CCeeEEEEEEE
Confidence            84334444333

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.71  E-value=9.9e-17  Score=129.79  Aligned_cols=91  Identities=15%  Similarity=0.250  Sum_probs=55.5

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcC-CC-CCeEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKG-DP-EPRVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p-~p~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C  262 (356)
                      +|.+...+....+..|+.++|.|.+.+ +| ++.+.|+++|..+...........++    .+.|.|.....+| |.|+|
T Consensus       141 ~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC  219 (248)
T 3u2s_H          141 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC  219 (248)
T ss_dssp             CCEEEEECCC------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEE
T ss_pred             CCEEEEeCCCccccCCCcEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEE
Confidence            344443333334567999999999976 55 35699999886432111000111111    2478899988888 99999


Q ss_pred             EEEcCCCceEEEEEEecC
Q psy12422        263 TATNSLGTAETKCKLTPL  280 (356)
Q Consensus       263 ~a~n~~g~~~~~~~l~p~  280 (356)
                      .|.|..+.......+.+.
T Consensus       220 ~v~h~~~~~~~~~~l~~~  237 (248)
T 3u2s_H          220 NVNHKPSNTKVDKKVEPK  237 (248)
T ss_dssp             EEEEGGGTEEEEEECCC-
T ss_pred             EEEECCCCcceEEEEccC
Confidence            999999888777777643

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.71  E-value=7.7e-17  Score=138.70  Aligned_cols=163  Identities=13%  Similarity=0.134  Sum_probs=105.6

Q ss_pred             CCceEEEEEeccC-CCC---eeEEeeCCEEcccCC--eeEEecC----CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGSTK-PPP---TVKWYKGNRELSKRD--YSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~---~v~W~k~g~~l~~~~--~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |++++|.|.+.|. |.|   .|+|||++..+....  ......+    ....|+|..++.+|+|.|+|.+.+..+.....
T Consensus       183 g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~  262 (376)
T 2aty_A          183 TLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIE  262 (376)
T ss_pred             CCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCCceE
Confidence            6899999999887 333   699999987664211  1111122    23379999999999999999998876533222


Q ss_pred             EEEEEeccccchhhhhhcccccccCccceeeecccCCceeeecccccccCCccccCCCCceEEEEeeccccccccccccC
Q psy12422         71 CVVIVESEEESKEQQELAHNFLYSGDRKYIEKHIRPAPAIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNAT  150 (356)
Q Consensus        71 ~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~p~p~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      ..+.+..                                                                         
T Consensus       263 ~~v~~~~-------------------------------------------------------------------------  269 (376)
T 2aty_A          263 KTISKTK-------------------------------------------------------------------------  269 (376)
T ss_pred             EEEcCCC-------------------------------------------------------------------------
Confidence            2211100                                                                         


Q ss_pred             CCccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCCC--CCeEEEEECCE
Q psy12422        151 SPSKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDP--EPRVSWTKNGQ  228 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~g~  228 (356)
                                                        ....+|.+...+......+|+.++|.|.+.|++  .+.|+|+|||.
T Consensus       270 ----------------------------------~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~  315 (376)
T 2aty_A          270 ----------------------------------GRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQ  315 (376)
T ss_pred             ----------------------------------CCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCE
Confidence                                              002345554444444445689999999999864  35799999998


Q ss_pred             EccCCCceeE--EEeCC---EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        229 PLNSSNILDL--KYKNG---VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       229 ~~~~~~~~~~--~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      .+........  ..++.   .+.|.|.....+|.|.|+|+|.|..-.
T Consensus       316 ~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          316 PAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             ECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence            8753222111  11111   246788888888899999999998764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.70  E-value=1e-16  Score=126.89  Aligned_cols=131  Identities=19%  Similarity=0.275  Sum_probs=91.5

Q ss_pred             ccCCceeecCCCeEEEEEEEcCCCCCeEEEEECC--EEc------------cCCCceeEEEeCCEEEEEEccCCCCCCeE
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNG--QPL------------NSSNILDLKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      ..+..+.+.+|+++.|.|.+.+.|.+.|.|+|++  ..+            ....++.....++...|.|.+++.+|+|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   85 (213)
T 3d9a_L            6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM   85 (213)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEE
Confidence            3456778999999999999999999999999843  211            11245555556667899999999999999


Q ss_pred             EEEEEEcCCCceEE---EEEEec-CCCCcc----------------------------ceeEEeC-------C-------
Q psy12422        260 YVCTATNSLGTAET---KCKLTP-LNSSNI----------------------------LDLKYKN-------G-------  293 (356)
Q Consensus       260 Y~C~a~n~~g~~~~---~~~l~p-~~~~~~----------------------------~~~~~~~-------~-------  293 (356)
                      |+|.|.|..+....   .+.+.. ...|.+                            ..+.|.+       .       
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~  165 (213)
T 3d9a_L           86 YFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTD  165 (213)
T ss_dssp             EEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECC
T ss_pred             EEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCC
Confidence            99999998764321   222220 001110                            0244432       1       


Q ss_pred             ----------eEEEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy12422        294 ----------VASLQIQEVFPEDEGVYVCTATNSLGTAETK  324 (356)
Q Consensus       294 ----------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  324 (356)
                                .+.|.|.++..+|+|.|+|.|.|........
T Consensus       166 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  206 (213)
T 3d9a_L          166 QDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIV  206 (213)
T ss_dssp             CCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEE
T ss_pred             ccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceE
Confidence                      2389999999999999999999987664333

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.70  E-value=4.4e-16  Score=106.59  Aligned_cols=89  Identities=19%  Similarity=0.409  Sum_probs=78.5

Q ss_pred             ecccCCceeecCCCeEEEEEEEcCC-CCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      +...+.+..+.+|+.+.|.|.+.|. |.|.+.|++++..+....++.+...++...|.|.+++.+|+|.|+|.|.|..|.
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE   83 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence            3344567889999999999999997 899999999999998888877777778889999999999999999999999999


Q ss_pred             eEEEEEEecC
Q psy12422        271 AETKCKLTPL  280 (356)
Q Consensus       271 ~~~~~~l~p~  280 (356)
                      ....+.|...
T Consensus        84 ~~~~~~l~V~   93 (97)
T 2bk8_A           84 DSSYAELFVK   93 (97)
T ss_dssp             EEEEEEEEET
T ss_pred             EeEEEEEEEE
Confidence            9888877644

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.70  E-value=9.2e-17  Score=113.58  Aligned_cols=82  Identities=17%  Similarity=0.287  Sum_probs=71.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|.|.|.++|||+|..+... ++.+...++...|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.+
T Consensus        22 G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  101 (114)
T 2cqv_A           22 GESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP  101 (114)
T ss_dssp             TCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSC
T ss_pred             CCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCC
Confidence            789999999999999999999999988754 4555555667799999999999999999999999999999999998765


Q ss_pred             cch
Q psy12422         80 ESK   82 (356)
Q Consensus        80 ~~~   82 (356)
                      ..+
T Consensus       102 ~~P  104 (114)
T 2cqv_A          102 DPP  104 (114)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            543

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.70  E-value=4.1e-17  Score=130.85  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=45.0

Q ss_pred             CCceEEEEEeccCC----CCeeEEeeCCEEcccCCe--eEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          1 MQNVIKVKVGSTKP----PPTVKWYKGNRELSKRDY--SMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~~~g~p----~~~v~W~k~g~~l~~~~~--~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      |+++.|.|.+.|.+    ...|+|+|||+++.....  .....++.    ..|.|.....+|.|.|+|.|.|..+.
T Consensus        39 g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~  114 (240)
T 4acp_A           39 SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP  114 (240)
T ss_dssp             SSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC---
T ss_pred             CCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCC
Confidence            67899999998864    237999999999854321  11122332    36788777777899999999997653

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.70  E-value=9.6e-17  Score=113.17  Aligned_cols=80  Identities=13%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCe-eEEecC-------CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDY-SMSYSD-------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV   72 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~-~~~~~~-------~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   72 (356)
                      +..+.|.|.+.|+|.|.|+|||||.+|..+.+ ......       ....|.|.+++..|+|.|+|.|.|..|.+..++.
T Consensus        15 ~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~   94 (126)
T 1he7_A           15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM   94 (126)
T ss_dssp             CCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEE
Confidence            35688999999999999999999999986543 222211       2358999999999999999999999999999999


Q ss_pred             EEEecccc
Q psy12422         73 VIVESEEE   80 (356)
Q Consensus        73 l~v~~~~~   80 (356)
                      |.|.+.+.
T Consensus        95 l~v~~~P~  102 (126)
T 1he7_A           95 AAFMDNPF  102 (126)
T ss_dssp             ECCCSCTT
T ss_pred             EEEEcCCC
Confidence            98876543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.70  E-value=7e-17  Score=128.75  Aligned_cols=135  Identities=15%  Similarity=0.176  Sum_probs=88.7

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCe---EEEEECCEEccCC----------------CceeE-------EEeCCEEEEEEcc
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPR---VSWTKNGQPLNSS----------------NILDL-------KYKNGVASLQIQE  251 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~---i~W~~~g~~~~~~----------------~~~~~-------~~~~~~~~L~i~~  251 (356)
                      .+.+..|++++|.|.+.+.|.+.   |.|+|++..+...                .+...       ....+..+|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            45788999999999999887764   8999976433110                00000       0112335799999


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEEEe-cCCCCccc---------------------------eeEEeC-----------
Q psy12422        252 VFPEDEGVYVCTATNSLGTAETKCKLT-PLNSSNIL---------------------------DLKYKN-----------  292 (356)
Q Consensus       252 v~~~d~G~Y~C~a~n~~g~~~~~~~l~-p~~~~~~~---------------------------~~~~~~-----------  292 (356)
                      ++.+|+|.|.|.|.|..+......... ....+...                           .+.|..           
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~  169 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQE  169 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEE
T ss_pred             CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcce
Confidence            999999999999999887654433222 00000000                           222211           


Q ss_pred             ---------CeEEEEEecCCCCCCeEEEEEEEcCCcceEE--EEEEEEEec
Q psy12422        293 ---------GVASLQIQEVFPEDEGVYVCTATNSLGTAET--KCKLTVRST  332 (356)
Q Consensus       293 ---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~--~~~l~V~~~  332 (356)
                               ..+.|.|..+..+|+|.|+|.|+|..|....  +++|.|++.
T Consensus       170 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y~  220 (225)
T 4fmk_A          170 PGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYH  220 (225)
T ss_dssp             ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTTC
T ss_pred             EEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEEC
Confidence                     1246999999999999999999999887644  556666553

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.70  E-value=6.6e-16  Score=123.02  Aligned_cols=139  Identities=16%  Similarity=0.211  Sum_probs=92.4

Q ss_pred             CCceeecCCCeEEEEEEEcCCCC-----CeEEEEECCEEccC---------------CCceeEEE---eCCEEEEEEccC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPE-----PRVSWTKNGQPLNS---------------SNILDLKY---KNGVASLQIQEV  252 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~-----p~i~W~~~g~~~~~---------------~~~~~~~~---~~~~~~L~i~~v  252 (356)
                      +..+.+.+|+++.|.|.+.+.|.     +.+.|++++..+..               ..+..+..   ..+...|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            35567899999999999988774     37999997633210               01111111   124568999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEecCCCCcc--------------------------ceeEEeCC-e-----------
Q psy12422        253 FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI--------------------------LDLKYKNG-V-----------  294 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~--------------------------~~~~~~~~-~-----------  294 (356)
                      +.+|+|.|+|.|.| .+.....+.|.+..++..                          ..+.|..+ .           
T Consensus        88 ~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~  166 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTN  166 (222)
T ss_dssp             CGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEE
T ss_pred             ccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEE
Confidence            99999999999999 565555555542211100                          03444432 0           


Q ss_pred             -----E---EEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCC
Q psy12422        295 -----A---SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAA  335 (356)
Q Consensus       295 -----~---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  335 (356)
                           .   .+.+..+..+|+|.|+|.|.|..|..+..+.|.|.++|..
T Consensus       167 ~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~~  215 (222)
T 3sbw_C          167 SKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLA  215 (222)
T ss_dssp             CC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC---
T ss_pred             EcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCccc
Confidence                 1   1122245678999999999999999999999999877653

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.69  E-value=1.4e-16  Score=129.55  Aligned_cols=76  Identities=21%  Similarity=0.340  Sum_probs=51.8

Q ss_pred             CceeecCCCeEEEEEEEcCC-CCC-eEEEEECCEEccCCCcee---EE----EeCC----EEEEEEccCCCC-CCeEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGD-PEP-RVSWTKNGQPLNSSNILD---LK----YKNG----VASLQIQEVFPE-DEGVYVC  262 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~-p~p-~i~W~~~g~~~~~~~~~~---~~----~~~~----~~~L~i~~v~~~-d~G~Y~C  262 (356)
                      ....+.+|+.++|.|.+.|. |.+ .|.|++||..+.......   ..    ..++    .+.|.|...... |.|.|+|
T Consensus       131 ~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC  210 (252)
T 1oga_E          131 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRC  210 (252)
T ss_dssp             CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEE
T ss_pred             ChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEE
Confidence            33445679999999999875 654 899999999876542211   00    0111    235888777664 5789999


Q ss_pred             EEEcCCCceE
Q psy12422        263 TATNSLGTAE  272 (356)
Q Consensus       263 ~a~n~~g~~~  272 (356)
                      .|.|......
T Consensus       211 ~v~~~~l~~~  220 (252)
T 1oga_E          211 QVQFYGLSEN  220 (252)
T ss_dssp             EEEECCBCTT
T ss_pred             EEEcCCCCCC
Confidence            9999876543

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.69  E-value=5e-17  Score=109.05  Aligned_cols=79  Identities=22%  Similarity=0.410  Sum_probs=67.7

Q ss_pred             CCCeecccCCce--eecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        188 TPPQFANKLTDK--TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       188 ~~p~~~~~~~~~--~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      .|+.+..++.+.  .+.+|+++.|.|.+.+ |.|.+.|+|||..+..+.++.+..+++..+|.|.+++.+|+|.|+|.|.
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG   81 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECS
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEc
Confidence            456666555554  4568999999999965 8899999999999999888888888888899999999999999999997


Q ss_pred             cC
Q psy12422        266 NS  267 (356)
Q Consensus       266 n~  267 (356)
                      |.
T Consensus        82 n~   83 (91)
T 2lvc_A           82 DE   83 (91)
T ss_dssp             SC
T ss_pred             ce
Confidence            65

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.69  E-value=2.3e-16  Score=108.46  Aligned_cols=77  Identities=23%  Similarity=0.314  Sum_probs=67.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-eeE-EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.+.|||+|..+.... +.. ...++..+|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.+
T Consensus        20 G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           20 GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             TSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEEec
Confidence            7899999999999999999999999997653 222 2356677999999999999999999999999999999998864

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.69  E-value=2.5e-16  Score=109.17  Aligned_cols=78  Identities=32%  Similarity=0.554  Sum_probs=69.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|..+... ++.+...++..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.
T Consensus        23 G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           23 GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             TCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEECC
Confidence            789999999999999999999999999754 455566667779999999999999999999999999999999998753

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.69  E-value=1.1e-16  Score=108.69  Aligned_cols=75  Identities=27%  Similarity=0.262  Sum_probs=65.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--EEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--RELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.|+|+|+|  ..+.... ......+...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        17 G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   93 (93)
T 1wit_A           17 GFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL-LVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             TBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS-EEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE-EEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            789999999999999999999999  8886543 34445666789999999999999999999999999988888773

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.69  E-value=1.9e-17  Score=139.91  Aligned_cols=128  Identities=13%  Similarity=0.218  Sum_probs=83.8

Q ss_pred             cccCCceeecCCCeEEEEEEEcCC-CCC---eEEEEECC-EEccCCCceeEEEeC----CEEEEEEccCCCCCCeEEEEE
Q psy12422        193 ANKLTDKTIDDGQCLDLSAVVKGD-PEP---RVSWTKNG-QPLNSSNILDLKYKN----GVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       193 ~~~~~~~~v~~g~~~~l~C~~~g~-p~p---~i~W~~~g-~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      ...+....+.+|+++.|.|.+.|. |.|   .|.|++++ ..+............    ..+.|.|.+++.+|+|.|+|.
T Consensus       117 ~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~  196 (323)
T 2wqr_A          117 LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR  196 (323)
T ss_dssp             ECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             EcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEE
Confidence            444555568899999999999875 556   89999964 444322211110111    234799999999999999999


Q ss_pred             EEcCCCceEEEEEEe--------------cCC------------------CCccceeEEeCC------------------
Q psy12422        264 ATNSLGTAETKCKLT--------------PLN------------------SSNILDLKYKNG------------------  293 (356)
Q Consensus       264 a~n~~g~~~~~~~l~--------------p~~------------------~~~~~~~~~~~~------------------  293 (356)
                      |.|..+.......+.              +..                  .+....+.|.++                  
T Consensus       197 a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~  276 (323)
T 2wqr_A          197 VTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTK  276 (323)
T ss_dssp             EECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECS
T ss_pred             EECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCC
Confidence            999875432222221              000                  000003444321                  


Q ss_pred             ------eEEEEEecCCCCCCeEEEEEEEcCCcc
Q psy12422        294 ------VASLQIQEVFPEDEGVYVCTATNSLGT  320 (356)
Q Consensus       294 ------~~~L~i~~v~~~d~G~Y~C~a~n~~g~  320 (356)
                            .+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       277 ~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          277 GSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             SSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             CCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence                  146899999999999999999998876

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.69  E-value=3.2e-16  Score=117.05  Aligned_cols=107  Identities=30%  Similarity=0.571  Sum_probs=80.3

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+....++.+...                         
T Consensus        39 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~-------------------------   93 (154)
T 1fhg_A           39 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD-------------------------   93 (154)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEC-------------------------
T ss_pred             CCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEEC-------------------------
Confidence            5678888888889999999999999999999999999999987754332211100                         


Q ss_pred             CCCceEEEEEEecCCCCccceeEEeCCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCCCCCC
Q psy12422        267 SLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPS  342 (356)
Q Consensus       267 ~~g~~~~~~~l~p~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~  342 (356)
                                              ......|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|++...+..-
T Consensus        94 ------------------------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~~~~~g  145 (154)
T 1fhg_A           94 ------------------------EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEG  145 (154)
T ss_dssp             ------------------------TTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC----------
T ss_pred             ------------------------CCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEeCcCcCCCCCCCC
Confidence                                    0134689999999999999999999999999999999999999887665543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.69  E-value=1.4e-16  Score=109.85  Aligned_cols=94  Identities=33%  Similarity=0.580  Sum_probs=79.2

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE-EEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL-KYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+........ ....+...|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (100)
T 2kdg_A            3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK   82 (100)
T ss_dssp             CEEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence            4567777777888999999999999999999999999999999877654333 334555799999999999999999999


Q ss_pred             cCCCceEEEEEEecC
Q psy12422        266 NSLGTAETKCKLTPL  280 (356)
Q Consensus       266 n~~g~~~~~~~l~p~  280 (356)
                      |..|....++.|...
T Consensus        83 n~~g~~~~~~~l~V~   97 (100)
T 2kdg_A           83 NRAGEATFTVQLDVL   97 (100)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEEEEE
Confidence            999998888887643

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.69  E-value=1e-16  Score=105.73  Aligned_cols=71  Identities=28%  Similarity=0.451  Sum_probs=64.3

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      .++.+.+|+++.|.|.+.+ |.|.+.|+|||..+..+.++.+..+++..+|.|.+++.+|+|.|+|.|.|..
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~   74 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQDS   74 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTTC
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCEE
Confidence            5678999999999999976 9999999999999999888888888888899999999999999999996653

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.68  E-value=6.7e-18  Score=133.73  Aligned_cols=71  Identities=14%  Similarity=0.228  Sum_probs=48.3

Q ss_pred             eecCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCcee---EEE---eCC----EEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        200 TIDDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILD---LKY---KNG----VASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~---~~~---~~~----~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .+.+|+.++|.|.+.|+ |+ +.|.|+|||..+.......   ...   .++    .+.|.|.....+|.|.|+|+|.|.
T Consensus       118 ~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~  197 (214)
T 1ow0_A          118 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHE  197 (214)
T ss_dssp             TTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECT
T ss_pred             HhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECC
Confidence            46679999999999885 54 4899999999886542111   111   122    134555555445689999999998


Q ss_pred             CCc
Q psy12422        268 LGT  270 (356)
Q Consensus       268 ~g~  270 (356)
                      ...
T Consensus       198 ~l~  200 (214)
T 1ow0_A          198 ALP  200 (214)
T ss_dssp             TCT
T ss_pred             CCC
Confidence            754

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.68  E-value=3.5e-16  Score=126.88  Aligned_cols=150  Identities=12%  Similarity=0.164  Sum_probs=95.5

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee-EEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD-LKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+....... .........|.|.+++.+|+|.|+|.|.
T Consensus         5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A            5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            56677777665 67899999999999974 567899999886543111000 0001234689999999999999999998


Q ss_pred             cCCC-------ceEEEEEEec-CCCCcc--------c----------------eeEEeC------------------CeE
Q psy12422        266 NSLG-------TAETKCKLTP-LNSSNI--------L----------------DLKYKN------------------GVA  295 (356)
Q Consensus       266 n~~g-------~~~~~~~l~p-~~~~~~--------~----------------~~~~~~------------------~~~  295 (356)
                      |..+       +....+.+.. ...+.+        .                .+.|.+                  ...
T Consensus        83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~  162 (257)
T 1b6u_A           83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQA  162 (257)
T ss_dssp             CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSCCSEEEEEETTSSCEECCBCBCCSSSCCBE
T ss_pred             ccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCCCcEEEEEECCcccCcccccccccCCceeE
Confidence            6431       2223333331 011110        0                344432                  257


Q ss_pred             EEEEecCCCCCCeEEEEEEEcCCc-----ceEEEEEEEEEecCCCCCCCCC
Q psy12422        296 SLQIQEVFPEDEGVYVCTATNSLG-----TAETKCKLTVRSTPAANLGKSP  341 (356)
Q Consensus       296 ~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~p~~~~~~~~  341 (356)
                      .|.|.+|+  |+|.|+|.|+|..+     ..+..+.|.|.++|... .|.|
T Consensus       163 ~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~-~p~~  210 (257)
T 1b6u_A          163 DFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNS-WPSP  210 (257)
T ss_dssp             EEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC--------
T ss_pred             EEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCC-CCCC
Confidence            89999998  99999999998632     23457889999998765 4444

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.68  E-value=1.9e-16  Score=108.94  Aligned_cols=93  Identities=31%  Similarity=0.603  Sum_probs=78.5

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCc-eeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI-LDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+..... +.....++..+|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (99)
T 1u2h_A            3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAV   82 (99)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEE
Confidence            3467777778888999999999999999999999999999999876543 333344556689999999999999999999


Q ss_pred             cCCCceEEEEEEec
Q psy12422        266 NSLGTAETKCKLTP  279 (356)
Q Consensus       266 n~~g~~~~~~~l~p  279 (356)
                      |..|.....+.|.+
T Consensus        83 N~~g~~~~~~~l~V   96 (99)
T 1u2h_A           83 NEYGARQCEARLEV   96 (99)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCceeEEEEEEE
Confidence            99999888877753

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.68  E-value=6.2e-17  Score=112.64  Aligned_cols=93  Identities=27%  Similarity=0.417  Sum_probs=83.2

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+....++.+.......+|.|.+++.+|+|.|+|.|.|
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   91 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN   91 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence            66788888888999999999999999999999999999999988877777776666678999999999999999999999


Q ss_pred             CCCceEEEEEEec
Q psy12422        267 SLGTAETKCKLTP  279 (356)
Q Consensus       267 ~~g~~~~~~~l~p  279 (356)
                      ..|.....+.|.+
T Consensus        92 ~~G~~~~~~~l~V  104 (106)
T 1nct_A           92 SEGKQEAEFTLTI  104 (106)
T ss_dssp             SSCBCCEEEEEEE
T ss_pred             CCCeEEEEEEEEE
Confidence            9999888777753

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.68  E-value=3.9e-16  Score=125.02  Aligned_cols=78  Identities=19%  Similarity=0.305  Sum_probs=53.4

Q ss_pred             eecCCCeEEEEEEEcC-CC-CCeEEEEECCEEccCCCcee--EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        200 TIDDGQCLDLSAVVKG-DP-EPRVSWTKNGQPLNSSNILD--LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g-~p-~p~i~W~~~g~~~~~~~~~~--~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      .+.+|+.++|.|.+.+ +| .+.+.|  ++..+.......  ....++    .+.|.|.....+| |.|+|.|.|..+..
T Consensus       139 ~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~  215 (230)
T 3n9g_H          139 KSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  215 (230)
T ss_dssp             CCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTE
T ss_pred             cccCCCCEEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCc
Confidence            4568999999999977 44 346999  554443211000  011111    2479999999999 99999999999887


Q ss_pred             EEEEEEecC
Q psy12422        272 ETKCKLTPL  280 (356)
Q Consensus       272 ~~~~~l~p~  280 (356)
                      .....+.+.
T Consensus       216 ~~~~~~~v~  224 (230)
T 3n9g_H          216 KVDKRVEPK  224 (230)
T ss_dssp             EEEEECCCC
T ss_pred             ceEEEccCC
Confidence            777777644

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.68  E-value=3.5e-16  Score=107.78  Aligned_cols=78  Identities=24%  Similarity=0.345  Sum_probs=68.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC--eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|..+....  ......++..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.
T Consensus        20 G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           20 GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             TCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEEec
Confidence            7899999999999999999999999987542  33445566679999999999999999999999999999999998753

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.68  E-value=8.1e-16  Score=108.44  Aligned_cols=93  Identities=19%  Similarity=0.323  Sum_probs=73.5

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeC-------CEEEEEEccCCCCCCeE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN-------GVASLQIQEVFPEDEGV  259 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~  259 (356)
                      ..||.|.+. .   ...+..+.|.|.+.|+|.|.|+|+|||..+....+.......       ..+.|.|.+++..|+|.
T Consensus         2 ~~pP~I~l~-~---~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   77 (126)
T 1he7_A            2 HMPASVQLH-T---AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN   77 (126)
T ss_dssp             CCCCCCCCC-C---CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEE
T ss_pred             CCCCEEEcc-C---CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEE
Confidence            356665222 1   336778999999999999999999999999887665443322       24689999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEecCCCC
Q psy12422        260 YVCTATNSLGTAETKCKLTPLNSS  283 (356)
Q Consensus       260 Y~C~a~n~~g~~~~~~~l~p~~~~  283 (356)
                      |+|+|.|..|.+.+++.+.....|
T Consensus        78 YtC~A~N~~G~~~~t~~l~v~~~P  101 (126)
T 1he7_A           78 YTLLAANPFGQASASIMAAFMDNP  101 (126)
T ss_dssp             EEEEEEETTEEEEEEEEECCCSCT
T ss_pred             EEEEEEECCCeEEEEEEEEEEcCC
Confidence            999999999999999998754433

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.68  E-value=6.1e-16  Score=109.47  Aligned_cols=95  Identities=24%  Similarity=0.445  Sum_probs=80.9

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC-CCceeEEEeC-CEEEEEEccCCCCCCeEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS-SNILDLKYKN-GVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~-~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ..+|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+.. ..++.+.... +..+|.|.+++.+|+|.|+|.|
T Consensus        13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            5678888888899999999999999999999999999999999875 3455444433 4568999999999999999999


Q ss_pred             EcCCCceEEEEEEecCC
Q psy12422        265 TNSLGTAETKCKLTPLN  281 (356)
Q Consensus       265 ~n~~g~~~~~~~l~p~~  281 (356)
                      .|..|.....+.|.+..
T Consensus        93 ~N~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           93 VNEAGVTTCNTRLDVTA  109 (116)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EcCCCeEEEEEEEEEeC
Confidence            99999998888887443

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=1.2e-16  Score=112.31  Aligned_cols=101  Identities=30%  Similarity=0.517  Sum_probs=80.4

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+..+.+.+|+.+.|.|.+.|+|.|.+.|+++|..+..........                          
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--------------------------   60 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV--------------------------   60 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEE--------------------------
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEE--------------------------
Confidence            567888888888999999999999999999999999999987765332211100                          


Q ss_pred             CCCceEEEEEEecCCCCccceeEEeCCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCC
Q psy12422        267 SLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAAN  336 (356)
Q Consensus       267 ~~g~~~~~~~l~p~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  336 (356)
                                             ...+...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.++|..+
T Consensus        61 -----------------------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           61 -----------------------RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP  107 (110)
T ss_dssp             -----------------------CTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECCCCSS
T ss_pred             -----------------------ecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCCCCCC
Confidence                                   01124578999999999999999999999998888999999888765

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.68  E-value=6.4e-16  Score=105.78  Aligned_cols=78  Identities=28%  Similarity=0.480  Sum_probs=69.1

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|. |.|.+.|||++..+... ++.+...++...|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.
T Consensus        16 G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~   95 (97)
T 2bk8_A           16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGV   95 (97)
T ss_dssp             TCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEETTT
T ss_pred             CCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEEEec
Confidence            7899999999997 99999999999999754 455556777789999999999999999999999999999999988753

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.67  E-value=4.1e-16  Score=107.25  Aligned_cols=77  Identities=22%  Similarity=0.435  Sum_probs=66.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC--eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.|.|+|+|..+....  +.....++..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+
T Consensus        20 G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG   98 (99)
T ss_dssp             TCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEEEC
Confidence            7899999999999999999999999987542  3334455667899999999999999999999999999999998864

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.67  E-value=7.5e-17  Score=128.54  Aligned_cols=144  Identities=19%  Similarity=0.229  Sum_probs=90.3

Q ss_pred             ceeecCCCeEEEEEEEcCCCC-----CeEEEEECCEEcc-------------CCCceeEEE---eCCEEEEEEccCCCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPE-----PRVSWTKNGQPLN-------------SSNILDLKY---KNGVASLQIQEVFPED  256 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~-----p~i~W~~~g~~~~-------------~~~~~~~~~---~~~~~~L~i~~v~~~d  256 (356)
                      .+.+.+|+++.|.|.+.+.|.     +.+.|++++....             ...+..+..   ..+...|.|.+++.+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            356789999999999988764     6799999763321             011111110   1124579999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEecCC---CCcc--------------------------ceeEEeCC--------------
Q psy12422        257 EGVYVCTATNSLGTAETKCKLTPLN---SSNI--------------------------LDLKYKNG--------------  293 (356)
Q Consensus       257 ~G~Y~C~a~n~~g~~~~~~~l~p~~---~~~~--------------------------~~~~~~~~--------------  293 (356)
                      +|.|+|.+.|.. .....+.+.+..   .+.+                          ..+.|..+              
T Consensus        84 ~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~  162 (222)
T 4i0k_A           84 EGSYTCFVSIQD-FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQM  162 (222)
T ss_dssp             CSCEEEEEEECC-CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEE
T ss_pred             CEEEEEEEEeCC-CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEE
Confidence            999999999753 222222222100   0000                          03444331              


Q ss_pred             ------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCCCCCC
Q psy12422        294 ------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPS  342 (356)
Q Consensus       294 ------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~  342 (356)
                            ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|.++|-....++..
T Consensus       163 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~  217 (222)
T 4i0k_A          163 ANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFPPETGH  217 (222)
T ss_dssp             ECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-----------
T ss_pred             cCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccccCCccCc
Confidence                  1248899999999999999999999999999999999998766555443

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=4.1e-16  Score=109.44  Aligned_cols=92  Identities=26%  Similarity=0.489  Sum_probs=78.3

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC-CCceeEEEe-CCEEEEEEccCCCCCCeEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS-SNILDLKYK-NGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+.. ..++.+... .+...|.|.+++.+|+|.|+|.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            5678888888888999999999999999999999999999998875 344444443 45568999999999999999999


Q ss_pred             EcCCCceEEEEEEe
Q psy12422        265 TNSLGTAETKCKLT  278 (356)
Q Consensus       265 ~n~~g~~~~~~~l~  278 (356)
                      .|..|.....+.|.
T Consensus        86 ~N~~g~~~~~~~l~   99 (110)
T 2dm2_A           86 ANPQGRISCTGRLM   99 (110)
T ss_dssp             ECTTCCEEECCCEE
T ss_pred             EECCCeEEEEEEEE
Confidence            99999988777666

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.67  E-value=7.8e-16  Score=126.26  Aligned_cols=246  Identities=14%  Similarity=0.127  Sum_probs=83.2

Q ss_pred             CCceEEEEEeccCCCCe-eEEeeCCEEcccCCeeE-EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPT-VKWYKGNRELSKRDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~-v~W~k~g~~l~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|+|.+. .+.|. +.|.-   ++...  .. ....+...|.|.+++.+  |.|.|.+....-..+..+.|.|..+
T Consensus        14 G~sv~l~Cs~~-c~~p~~~~~~t---~l~~~--~~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v~l~V~~~   85 (291)
T 1mq8_A           14 GGSVLVTCSTS-CDQPKLLGIET---PLPKK--ELLLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTAKTFLTVYWT   85 (291)
T ss_dssp             TCEEEEEEEEC-CSSCSEEEEEC---SSCCC--CCCCSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEEECEEEECBC
T ss_pred             CCeEEEEEeCC-CCCCccceEEe---cCCCc--ccccCCCceEEEEEEecccC--CeEEEEEEcCCccEEEEEEEEEecC
Confidence            89999999996 44554 88853   11111  01 11112235788887743  4699999765445566778888877


Q ss_pred             ccchhhhhhcccccccCccceeeeccc---CCc--eeeecccccccCCccccCCCCceEEEEeeccccccccccccCCCc
Q psy12422         79 EESKEQQELAHNFLYSGDRKYIEKHIR---PAP--AIITTRQEIKSSYSSHTDDTGRTTTQMSTLSSNYSSSTNNATSPS  153 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~~~~l~c~~~---p~p--~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (356)
                      |..+.... ....+.+|+.++|.|.+.   |.+  .|.|++++..+.......   ......      +   ........
T Consensus        86 P~~v~I~~-~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~---~~~~~~------l---~~~~~~~D  152 (291)
T 1mq8_A           86 PERVELAP-LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG---EPAEVT------T---TVLVRRDH  152 (291)
T ss_dssp             CSCCCBCC-CCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCB---TTEEEE------E---ECCCSSSC
T ss_pred             CCCCEEec-CCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCC---CCceEE------E---Eeeeeecc
Confidence            55543332 234588999999999987   433  489999886654322110   000000      0   01111222


Q ss_pred             cceeeeeeccccCCC-C---CcccccceeeecCCCCCCCCCee-cccCCceeecCCCeEEEEEEEcCCCCC---eEEEEE
Q psy12422        154 KKITRRMNSILDTDS-P---SRSRSTTKELIMPPDTAMTPPQF-ANKLTDKTIDDGQCLDLSAVVKGDPEP---RVSWTK  225 (356)
Q Consensus       154 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~~~l~C~~~g~p~p---~i~W~~  225 (356)
                      +...+.|.+-..... .   ....+....+.+     +.+|.. ........+.+|+.++|.|.++|+|++   .+.|++
T Consensus       153 ~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V-----~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~  227 (291)
T 1mq8_A          153 HGANFSCRTELDLRPQGLELFENTSAPYQLQT-----FVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL  227 (291)
T ss_dssp             SSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------------------------------
T ss_pred             CCceEEEEEEecCCccCCccccccccceEEEE-----EecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEE
Confidence            223333333222111 0   011223333333     222211 110112268899999999999998665   599999


Q ss_pred             CCEEccCCCceeEEEeCCEEEEEEccC---CCCC--CeEEEEEEEcCCCceEEEEEEe
Q psy12422        226 NGQPLNSSNILDLKYKNGVASLQIQEV---FPED--EGVYVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       226 ~g~~~~~~~~~~~~~~~~~~~L~i~~v---~~~d--~G~Y~C~a~n~~g~~~~~~~l~  278 (356)
                      +|..+....    ..+++  .+.+...   ++++  .+.|+|.|.|.....+....+.
T Consensus       228 ~g~~l~~~~----~~~g~--~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~  279 (291)
T 1mq8_A          228 GDQRLNPTV----TYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT  279 (291)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CCEecCcee----eecCC--eEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEE
Confidence            999887531    11222  2333322   3444  5677898887555455555554

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.67  E-value=2.1e-16  Score=109.21  Aligned_cols=79  Identities=15%  Similarity=0.238  Sum_probs=65.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCee-EEe--cC---CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYS-MSY--SD---GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~-~~~--~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |+.+.|.|.+.|.|.|.++|+|||+++..+.+. ...  .+   ....|.|.+++.+|+|.|+|.|.|..|.+..++.|.
T Consensus        16 ~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   95 (103)
T 1wwb_X           16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH   95 (103)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             CcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEE
Confidence            457889999999999999999999999866432 211  11   123599999999999999999999999999999999


Q ss_pred             Eeccc
Q psy12422         75 VESEE   79 (356)
Q Consensus        75 v~~~~   79 (356)
                      |.+.+
T Consensus        96 V~~~P  100 (103)
T 1wwb_X           96 FMGWP  100 (103)
T ss_dssp             CSCCC
T ss_pred             ECCCC
Confidence            87653

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.67  E-value=1.1e-15  Score=120.62  Aligned_cols=128  Identities=17%  Similarity=0.270  Sum_probs=88.8

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEc------------cCCCceeEEEeCCEEEEEEccCCCCCCeEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPL------------NSSNILDLKYKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      +....+.+|+++.|.|.+.+.|.+.+.|+++  |..+            ....++.....++...|.|.+++.+|+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            5667899999999999999999899999984  2221            1123455455566779999999999999999


Q ss_pred             EEEEcCCCceEE---EEEEec-CCCCcc----------------------------ceeEEeCC----------------
Q psy12422        262 CTATNSLGTAET---KCKLTP-LNSSNI----------------------------LDLKYKNG----------------  293 (356)
Q Consensus       262 C~a~n~~g~~~~---~~~l~p-~~~~~~----------------------------~~~~~~~~----------------  293 (356)
                      |.|.|..+....   .+.+.. ..+|.+                            ..+.|.++                
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  166 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQD  166 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCcc
Confidence            999998764321   222220 000100                            02344321                


Q ss_pred             --------eEEEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy12422        294 --------VASLQIQEVFPEDEGVYVCTATNSLGTAET  323 (356)
Q Consensus       294 --------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  323 (356)
                              .+.|.|..+..+|+|.|+|.|.|.......
T Consensus       167 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (210)
T 1lk3_L          167 SKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPV  204 (210)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCE
T ss_pred             CCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCee
Confidence                    126899999999999999999998765433

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.66  E-value=1.6e-15  Score=118.87  Aligned_cols=128  Identities=9%  Similarity=0.091  Sum_probs=84.3

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee-EEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD-LKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...+. ..+.+|++++|.|.+.+ |.+.+.|+|+|..+....... .........|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   83 (201)
T 1nkr_A            6 HRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   83 (201)
T ss_dssp             -CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence            55677776665 67899999999999974 778999999987654211100 0111224689999999999999999998


Q ss_pred             cCCC-------ceEEEEEEec-CCCCcc------------------------ceeEEeC------------------CeE
Q psy12422        266 NSLG-------TAETKCKLTP-LNSSNI------------------------LDLKYKN------------------GVA  295 (356)
Q Consensus       266 n~~g-------~~~~~~~l~p-~~~~~~------------------------~~~~~~~------------------~~~  295 (356)
                      |...       +....+.+.. ...|.+                        ..+.|.+                  ...
T Consensus        84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~  163 (201)
T 1nkr_A           84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQA  163 (201)
T ss_dssp             BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESSCCSEEEEEETTCSSCEEEECEEEETTEEEE
T ss_pred             cCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCCCCceEEEEECCcccCcccccccccCCceEE
Confidence            7531       1222333321 011111                        0333422                  156


Q ss_pred             EEEEecCCCCCCeEEEEEEEcCC
Q psy12422        296 SLQIQEVFPEDEGVYVCTATNSL  318 (356)
Q Consensus       296 ~L~i~~v~~~d~G~Y~C~a~n~~  318 (356)
                      .|.|.+|+  |+|.|+|.|++..
T Consensus       164 ~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          164 DFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEEECC--SCEEEEEEEEETT
T ss_pred             EEEeCCcC--CCeeEEEEEEcCC
Confidence            89999998  9999999999763

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=3.3e-16  Score=107.93  Aligned_cols=92  Identities=26%  Similarity=0.383  Sum_probs=75.6

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+............  .+|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~n   83 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ--GTLQIKNLRISDTGTYTCVATS   83 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTT--CCEEEESCCTTTCCEEEEEEEC
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCC--CEEEEccCCcccCEEEEEEEEc
Confidence            56788888888889999999999999999999999999999888743222222222  3799999999999999999999


Q ss_pred             CCCceEEEEEEecC
Q psy12422        267 SLGTAETKCKLTPL  280 (356)
Q Consensus       267 ~~g~~~~~~~l~p~  280 (356)
                      ..|.....+.|...
T Consensus        84 ~~g~~~~~~~l~V~   97 (100)
T 2edj_A           84 SSGETSWSAVLDVT   97 (100)
T ss_dssp             SSCCCBCCEEEEEE
T ss_pred             CCCCEEEEEEEEEe
Confidence            99988877777643

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.66  E-value=1.6e-15  Score=104.81  Aligned_cols=83  Identities=24%  Similarity=0.339  Sum_probs=68.6

Q ss_pred             cCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE--EEeC---CEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        202 DDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL--KYKN---GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~--~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ..|..+.|.|.+.|+|.|.+.|+++|..+........  ...+   ..+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            4578899999999999999999999999987654322  2111   1356999999999999999999999999999999


Q ss_pred             EecCCCCc
Q psy12422        277 LTPLNSSN  284 (356)
Q Consensus       277 l~p~~~~~  284 (356)
                      |.....|.
T Consensus        94 l~V~~~P~  101 (103)
T 1wwb_X           94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEECCCCC
Confidence            98766554

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.66  E-value=9.1e-16  Score=105.49  Aligned_cols=77  Identities=23%  Similarity=0.459  Sum_probs=68.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|..+... ++.+...++..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus        21 G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           21 DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             SSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEEe
Confidence            789999999999999999999999999754 45566666777999999999999999999999999999999888863

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.66  E-value=9.4e-16  Score=108.51  Aligned_cols=80  Identities=25%  Similarity=0.317  Sum_probs=68.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc--CCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK--RDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~--~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.|.|+|+|..+..  .++.+.. .++..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus        30 G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           30 GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA  109 (116)
T ss_dssp             TEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeC
Confidence            78999999999999999999999999874  3444433 33566899999999999999999999999999999999987


Q ss_pred             ccc
Q psy12422         78 EEE   80 (356)
Q Consensus        78 ~~~   80 (356)
                      .+.
T Consensus       110 ~p~  112 (116)
T 2kkq_A          110 RPN  112 (116)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            643

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.66  E-value=1.7e-15  Score=123.37  Aligned_cols=79  Identities=18%  Similarity=0.242  Sum_probs=58.5

Q ss_pred             eecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECC--EEc-------------cCCCceeEE--EeCCEEEEEEccCC
Q psy12422        191 QFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNG--QPL-------------NSSNILDLK--YKNGVASLQIQEVF  253 (356)
Q Consensus       191 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g--~~~-------------~~~~~~~~~--~~~~~~~L~i~~v~  253 (356)
                      .+...+..+.+.+|++++|.|.+.+.|.+.+.|+|..  ...             ....++...  ......+|.|.+++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            3444556788999999999999999999999999822  111             011223322  23456789999999


Q ss_pred             CCCCeEEEEEEEcCCC
Q psy12422        254 PEDEGVYVCTATNSLG  269 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~g  269 (356)
                      .+|+|.|.|.|.|..+
T Consensus        85 ~~DsG~Y~C~~~~~~~  100 (256)
T 3tf7_C           85 RSDSAVYFCAVSAKGT  100 (256)
T ss_dssp             GGGCSEEEEEEECTTC
T ss_pred             cccCEEEEEEEecCCC
Confidence            9999999999999764

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=3.5e-16  Score=109.82  Aligned_cols=81  Identities=21%  Similarity=0.395  Sum_probs=69.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc--CCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK--RDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~--~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.|.|||+|..+..  .++.+.. .++...|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus        23 G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  102 (110)
T 2dm2_A           23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA  102 (110)
T ss_dssp             TCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEEC
T ss_pred             CCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEEC
Confidence            78999999999999999999999999874  2344433 35667899999999999999999999999999999999987


Q ss_pred             cccc
Q psy12422         78 EEES   81 (356)
Q Consensus        78 ~~~~   81 (356)
                      .+..
T Consensus       103 ~~~~  106 (110)
T 2dm2_A          103 VNSG  106 (110)
T ss_dssp             CSCC
T ss_pred             CCCC
Confidence            6543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.66  E-value=4e-16  Score=123.27  Aligned_cols=127  Identities=20%  Similarity=0.281  Sum_probs=88.3

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      .+.+.+|++++|.|.+.  |.+.+.|+++  +..+.            ...++......+..+|.|.+++.+|+|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            67899999999999998  8889999993  22221            22345555566778999999999999999999


Q ss_pred             EEcCCCc--eEEEEEEecC----CCCcc----------------------------ceeEEeCC----------------
Q psy12422        264 ATNSLGT--AETKCKLTPL----NSSNI----------------------------LDLKYKNG----------------  293 (356)
Q Consensus       264 a~n~~g~--~~~~~~l~p~----~~~~~----------------------------~~~~~~~~----------------  293 (356)
                      |.|..+.  ......|...    ..|.+                            ..+.|.++                
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~  166 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ  166 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceEC
Confidence            9998772  2222222211    11111                            13444321                


Q ss_pred             -------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy12422        294 -------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  326 (356)
Q Consensus       294 -------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  326 (356)
                             .+.|.|..+..+|+|.|+|.|.|..+..+..+.
T Consensus       167 ~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          167 SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             TTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             CCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence                   146888888888999999999999877666553

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.65  E-value=2.8e-16  Score=105.41  Aligned_cols=70  Identities=20%  Similarity=0.362  Sum_probs=58.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.+ |.|.++|||||++|..+ ++.+...++..+|.|.+++.+|+|.|+|.|.|.    +.++.|+|
T Consensus        21 g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~ltV   91 (91)
T 2lvc_A           21 SECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE----CAYFTVTI   91 (91)
T ss_dssp             TCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC----EEEEEEEC
T ss_pred             CCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce----EEEEEEEC
Confidence            789999999965 88999999999999765 466667777789999999999999999999554    45555543

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=5.1e-16  Score=106.51  Aligned_cols=75  Identities=15%  Similarity=0.102  Sum_probs=64.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+  .|.|.++|||||.++..+ ++.+...+...+|.|.+++.+|+|.|+|.|.|.  ..+.++.|.|.++|
T Consensus        22 G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           22 GKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAKVHVISGP   97 (100)
T ss_dssp             TSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEEEEEECCS
T ss_pred             CCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEEEEEeCCC
Confidence            7899999999  889999999999999764 455666666779999999999999999999998  55677888887654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.65  E-value=9.8e-16  Score=124.23  Aligned_cols=135  Identities=14%  Similarity=0.215  Sum_probs=87.8

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCe-----EEEEECCEEccCCCce-------eEE-----------EeCCEEEEEEccC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPR-----VSWTKNGQPLNSSNIL-------DLK-----------YKNGVASLQIQEV  252 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~-----i~W~~~g~~~~~~~~~-------~~~-----------~~~~~~~L~i~~v  252 (356)
                      +..+.+.+|+++.|.|.+.|.|++.     +.|++++.........       ...           ...+..+|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            4556789999999999999888776     9999953222100000       000           0112345999999


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEecCCCCcc---------------------------ceeEEeCC------------
Q psy12422        253 FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNI---------------------------LDLKYKNG------------  293 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~~g~~~~~~~l~p~~~~~~---------------------------~~~~~~~~------------  293 (356)
                      +.+|+|.|+|.+.|..+.....+.|.+...|.+                           ..+.|..+            
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~  169 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISE  169 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECT
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCCcccccc
Confidence            999999999999998887666555542111111                           03333321            


Q ss_pred             -----------------eEEEEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEEEE
Q psy12422        294 -----------------VASLQIQEVFPEDEGVYVCTATNSLGT--AETKCKLTVR  330 (356)
Q Consensus       294 -----------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~  330 (356)
                                       .+.|.|..+..+|+|.|+|.|.|..+.  ....+.|.|.
T Consensus       170 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V~  225 (248)
T 3pv7_A          170 DVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAA  225 (248)
T ss_dssp             TEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC---
T ss_pred             ceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEEc
Confidence                             246888888999999999999999886  4557777773

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.2e-15  Score=105.80  Aligned_cols=92  Identities=18%  Similarity=0.239  Sum_probs=76.5

Q ss_pred             CCCeecccCCc---eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        188 TPPQFANKLTD---KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       188 ~~p~~~~~~~~---~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      .+|.+...+..   ..+.+|+.+.|.|.+.+.|.+ +.|+++|..+....++.+..++....|.|.+++.+|+|.|+|.|
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT   84 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence            45666555555   789999999999999999998 99999999998887777777788889999999999999999999


Q ss_pred             EcCCCceEEEEEEecC
Q psy12422        265 TNSLGTAETKCKLTPL  280 (356)
Q Consensus       265 ~n~~g~~~~~~~l~p~  280 (356)
                      .|..+.....+...|.
T Consensus        85 ~n~~~~~~l~V~~~P~  100 (104)
T 2e6p_A           85 EGVSAFFGVTVQDPSG  100 (104)
T ss_dssp             SSCCCCEEEEEECCCC
T ss_pred             CCceEEEEEEEcCCCC
Confidence            9987755555544443

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.65  E-value=1.9e-15  Score=123.19  Aligned_cols=73  Identities=22%  Similarity=0.367  Sum_probs=55.2

Q ss_pred             CceeecCCCeEEEEEEEcCCC--CCeEEEEEC--CEEcc----------------CCCceeEEEe--CCEEEEEEccCCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTKN--GQPLN----------------SSNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~--g~~~~----------------~~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ....+.+|++++|.|.+.+.|  .+.+.|+|+  +..+.                ...++....+  .+..+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            345789999999999999886  688999985  22110                1234444432  4567999999999


Q ss_pred             CCCeEEEEEEEcCCC
Q psy12422        255 EDEGVYVCTATNSLG  269 (356)
Q Consensus       255 ~d~G~Y~C~a~n~~g  269 (356)
                      +|+|.|.|.|.|..|
T Consensus        88 ~DsG~Y~C~a~n~~g  102 (257)
T 1f3r_B           88 DDTGTYYCTRDLYGG  102 (257)
T ss_dssp             TCCEEEEEEEESSSS
T ss_pred             ccCEEEEEEEccccc
Confidence            999999999999864

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.65  E-value=9.9e-16  Score=119.11  Aligned_cols=128  Identities=16%  Similarity=0.195  Sum_probs=88.6

Q ss_pred             CCceeecCCCeEEEEEEEcC-CCCCeEEEEECCEEcc---CC---------------CceeEEEeCCEEEEEEccCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLN---SS---------------NILDLKYKNGVASLQIQEVFPED  256 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~---~~---------------~~~~~~~~~~~~~L~i~~v~~~d  256 (356)
                      +..+.+.+|++++|.|.+.+ .+.+.|.|+++|..+.   ..               .++.+  . ...+|.|.+++.+|
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~--~-~~~sL~I~~v~~~D   81 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF--T-QSYSLQLSNLKMED   81 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEE--C-TTCCEEECSCCGGG
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEE--C-CCeEEEECCCCccc
Confidence            45678899999999999975 4557899999986542   10               01111  1 23579999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEecCC---------------CC--cc------------ceeEEeCC------eEEEEEec
Q psy12422        257 EGVYVCTATNSLGTAETKCKLTPLN---------------SS--NI------------LDLKYKNG------VASLQIQE  301 (356)
Q Consensus       257 ~G~Y~C~a~n~~g~~~~~~~l~p~~---------------~~--~~------------~~~~~~~~------~~~L~i~~  301 (356)
                      +|.|.|.|.|..+.....+.|.+..               ..  .+            ..+.|.++      ...|+|..
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~~l~i~~  161 (193)
T 2if7_A           82 TGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSW  161 (193)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSSEEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCCCeEEEEe
Confidence            9999999999988655554444110               00  01            14566543      24577865


Q ss_pred             CCCC-CCeEEEEEEEcCCcceEEEEE
Q psy12422        302 VFPE-DEGVYVCTATNSLGTAETKCK  326 (356)
Q Consensus       302 v~~~-d~G~Y~C~a~n~~g~~~~~~~  326 (356)
                      ...+ |+|.|+|.|+|.+|..+..+.
T Consensus       162 ~~~~~d~G~Y~C~a~N~~g~~s~~~~  187 (193)
T 2if7_A          162 DPRISSEQDYTCIAENAVSNLSFSVS  187 (193)
T ss_dssp             CTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred             ccCcCCCCcEEEEEECCCCccccccc
Confidence            5554 899999999999998866544

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.65  E-value=6.2e-16  Score=123.46  Aligned_cols=88  Identities=19%  Similarity=0.299  Sum_probs=55.8

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcC-CC-CCeEEEEECCEEccCCCce--eEEEeCC----EEEEEEccCCCCCCeEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKG-DP-EPRVSWTKNGQPLNSSNIL--DLKYKNG----VASLQIQEVFPEDEGVY  260 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p-~p~i~W~~~g~~~~~~~~~--~~~~~~~----~~~L~i~~v~~~d~G~Y  260 (356)
                      +|.+...+....+.+|..++|.|.+.+ +| ++.+.|  ++..+......  .....++    .+.|.|.....+| |.|
T Consensus       129 ~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~y  205 (226)
T 3mlr_H          129 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY  205 (226)
T ss_dssp             CCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCC
T ss_pred             CCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeE
Confidence            344443222334568999999999976 45 456999  44333211100  0011111    2479999999999 999


Q ss_pred             EEEEEcCCCceEEEEEEec
Q psy12422        261 VCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       261 ~C~a~n~~g~~~~~~~l~p  279 (356)
                      +|.|.|..+.......+.|
T Consensus       206 tC~v~h~~~~~~~~~~~~~  224 (226)
T 3mlr_H          206 ICNVNHKPSNTKVDKKVEP  224 (226)
T ss_dssp             EEEEEEGGGTEEEEEECCC
T ss_pred             EEEEEECCCCcCeEEEccC
Confidence            9999999988777776654

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.65  E-value=1.4e-15  Score=119.56  Aligned_cols=63  Identities=24%  Similarity=0.365  Sum_probs=47.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCC--E---Ec--------ccCCeeEEec---CCeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGN--R---EL--------SKRDYSMSYS---DGVVSMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g--~---~l--------~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |++|+|.|.+.+.+ +.+.|||+.  .   .+        ...++.....   .+.++|+|.+++.+|+|.|.|.+.+..
T Consensus        16 G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   94 (207)
T 1ypz_E           16 GTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWH   94 (207)
T ss_dssp             TCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBC
T ss_pred             CCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            78999999997654 489999942  2   11        1234444433   566799999999999999999998763

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.65  E-value=6.7e-16  Score=122.61  Aligned_cols=133  Identities=16%  Similarity=0.318  Sum_probs=88.9

Q ss_pred             ecccCCceeecCCCeEEEEEEEcCC-CCCeEEEEECC--EE-------------cc---CCCceeEEEeCCEEEEEEccC
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKNG--QP-------------LN---SSNILDLKYKNGVASLQIQEV  252 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~~g--~~-------------~~---~~~~~~~~~~~~~~~L~i~~v  252 (356)
                      +...+ .+.+.+|+++.|.|.+.+. |.+.+.|+|..  ..             ..   ...++......+..+|.|.++
T Consensus         4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (218)
T 3s96_B            4 LTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNI   82 (218)
T ss_dssp             EECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSC
T ss_pred             EEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccC
Confidence            44444 6789999999999999988 89999999821  10             00   012444444566778999999


Q ss_pred             CCCCCeEEEEEEEcCCCc-----e--EEEEEEe--cCCCCcc----------------------------ceeEEeCCe-
Q psy12422        253 FPEDEGVYVCTATNSLGT-----A--ETKCKLT--PLNSSNI----------------------------LDLKYKNGV-  294 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~~g~-----~--~~~~~l~--p~~~~~~----------------------------~~~~~~~~~-  294 (356)
                      +.+|+|.|.|.|.|..|.     .  ...+.+.  +...|.+                            ..+.|.+++ 
T Consensus        83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~  162 (218)
T 3s96_B           83 QPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGT  162 (218)
T ss_dssp             CGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             CcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCE
Confidence            999999999999998761     1  1122222  1011111                            034443311 


Q ss_pred             ---------------------EEEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy12422        295 ---------------------ASLQIQEVFPEDEGVYVCTATNSLGTAETKC  325 (356)
Q Consensus       295 ---------------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  325 (356)
                                           +.|.|..+..+|+|.|+|.|.|..+..+..+
T Consensus       163 ~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          163 PITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             EC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             ECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence                                 2377888888899999999999987666544

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.65  E-value=3.7e-16  Score=109.36  Aligned_cols=93  Identities=29%  Similarity=0.529  Sum_probs=69.7

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..........  ....|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n   85 (108)
T 3kvq_A            8 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACS   85 (108)
T ss_dssp             ---CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET--TTTEEEECSCCGGGCEEEEEEEC-
T ss_pred             cCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC--CCcEEEEeecCcccCEEEEEEEEe
Confidence            567888888888899999999999999999999999999998887666554433  334899999999999999999999


Q ss_pred             CCCceEEEEEEecCC
Q psy12422        267 SLGTAETKCKLTPLN  281 (356)
Q Consensus       267 ~~g~~~~~~~l~p~~  281 (356)
                      ..|.....+.|....
T Consensus        86 ~~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           86 VLGCAKVEAFFIIEG  100 (108)
T ss_dssp             ---CEEEEEEEEEEC
T ss_pred             CCCceEEEEEEEEeC
Confidence            999999888887443

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=4.5e-16  Score=107.00  Aligned_cols=89  Identities=38%  Similarity=0.707  Sum_probs=76.2

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+.....   ....+...|.|.+++.+|+|.|+|.|.|
T Consensus         9 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   85 (99)
T 2yr3_A            9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAELHIQDALPEDHGTYTCLAEN   85 (99)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC---EEETTEEEEEECSCCTTCCBCEEEEEEC
T ss_pred             ccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce---EeeCCeEEEEECCCChhhCEEEEEEEEE
Confidence            5678888888888999999999999999999999999999988865432   3345567999999999999999999999


Q ss_pred             CCCceEEEEEEe
Q psy12422        267 SLGTAETKCKLT  278 (356)
Q Consensus       267 ~~g~~~~~~~l~  278 (356)
                      ..|....++.|.
T Consensus        86 ~~g~~~~~~~l~   97 (99)
T 2yr3_A           86 ALGQVSCSAWVT   97 (99)
T ss_dssp             SSCEEEEECCEE
T ss_pred             CCCeEEEEEEEE
Confidence            999887776654

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.64  E-value=1.1e-15  Score=104.13  Aligned_cols=87  Identities=20%  Similarity=0.455  Sum_probs=74.8

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|.| |.+.|+++|..+....++.+.  +  ..|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~--~~L~i~~~~~~D~G~Y~C~a~n   81 (95)
T 2ckn_A            7 AQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT--G--EEVEVRDSIPADSGLYACVTSS   81 (95)
T ss_dssp             SCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC--S--SEEEESSCCGGGSEEEEEEEEE
T ss_pred             CCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe--C--CEEEECCCChHHCEEEEEEecc
Confidence            5667888788889999999999999999998 799999999988766654432  3  3899999999999999999999


Q ss_pred             CCCceEEEEEEe
Q psy12422        267 SLGTAETKCKLT  278 (356)
Q Consensus       267 ~~g~~~~~~~l~  278 (356)
                      ..|.....+.|.
T Consensus        82 ~~g~~~~~~~l~   93 (95)
T 2ckn_A           82 PSGSDTTYFSVN   93 (95)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCCcEEEEEEEE
Confidence            999988877764

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.64  E-value=2e-15  Score=128.59  Aligned_cols=175  Identities=13%  Similarity=0.125  Sum_probs=94.3

Q ss_pred             cccccCccceeeecccC----CceeeecccccccCC--ccc-----------cCCCCceEEEEeeccccccccccccCCC
Q psy12422         90 NFLYSGDRKYIEKHIRP----APAIITTRQEIKSSY--SSH-----------TDDTGRTTTQMSTLSSNYSSSTNNATSP  152 (356)
Q Consensus        90 ~~~~~g~~~~l~c~~~p----~p~i~w~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (356)
                      ..+.+|+.+.|.|.+..    .+.+.|+++......  ...           .....+.... ........-+.......
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~~~~~~~~L~I~~v~~   88 (344)
T 1za6_B           10 EVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLT-ADTSASTAYVELSSLRS   88 (344)
T ss_dssp             EEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEE-EETTTTEEEEEECSCCG
T ss_pred             eEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEE-EecCCCEEEEEECCCCc
Confidence            45789999999999872    467999987421110  000           0001111111 11111111122333444


Q ss_pred             ccceeeeeeccccCCCCCcccccceeeecCCCCCCCCCeecccCCceeecCCCeEEEEEEEcCC-CC-CeEEEEECCEEc
Q psy12422        153 SKKITRRMNSILDTDSPSRSRSTTKELIMPPDTAMTPPQFANKLTDKTIDDGQCLDLSAVVKGD-PE-PRVSWTKNGQPL  230 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~  230 (356)
                      .+.+.|.|......    ........+.+... ...+|.+...+....+.+|+.++|.|.+.|. |. +.|.|+++|..+
T Consensus        89 ~D~G~Y~C~~~n~~----~~~~~~~~l~V~~~-~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~  163 (344)
T 1za6_B           89 EDTAVYFCTRSLNM----AYWGQGTLVTVSSA-STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTS  163 (344)
T ss_dssp             GGCEEEEEEETTTT----CEECCCEEEEECSS-CCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCT
T ss_pred             ccCEEEEEEEecCc----ceecCcEEEEEecC-CCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccC
Confidence            45555555443311    01112223333211 1244555443333456899999999999886 64 689999998764


Q ss_pred             cCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        231 NSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       231 ~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      ...........++    .+.|.|.+++.+| |.|+|.|.|..+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~  207 (344)
T 1za6_B          164 GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  207 (344)
T ss_dssp             TEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTE
T ss_pred             ceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            2110000000111    2479999999888 99999999998864

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.64  E-value=3.9e-15  Score=121.21  Aligned_cols=78  Identities=21%  Similarity=0.325  Sum_probs=50.5

Q ss_pred             eecCCCeEEEEEEEcC-CC-CCeEEEEECCEEccCCCce--eEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        200 TIDDGQCLDLSAVVKG-DP-EPRVSWTKNGQPLNSSNIL--DLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g-~p-~p~i~W~~~g~~~~~~~~~--~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      .+.+|+.++|.|.+.+ +| ++.+.|  ++..+......  .....++    .+.|.|.....+| |.|+|.|.|..+..
T Consensus       165 ~~~~g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~  241 (256)
T 3sob_H          165 KSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  241 (256)
T ss_dssp             ----TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred             ccccCCcEEEEEEEEEEECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCc
Confidence            4568999999999976 55 346999  55443321100  0011111    2479999999999 99999999999887


Q ss_pred             EEEEEEecC
Q psy12422        272 ETKCKLTPL  280 (356)
Q Consensus       272 ~~~~~l~p~  280 (356)
                      .....+.+.
T Consensus       242 ~~~~~~~~~  250 (256)
T 3sob_H          242 KVDKKVEPK  250 (256)
T ss_dssp             EEEEECCCC
T ss_pred             ceEEEeccc
Confidence            777766543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.64  E-value=4.9e-15  Score=122.06  Aligned_cols=81  Identities=16%  Similarity=0.205  Sum_probs=62.9

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCE-----Ecc---------CCCceeEEEeCCEEEEEEccCCC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ-----PLN---------SSNILDLKYKNGVASLQIQEVFP  254 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~-----~~~---------~~~~~~~~~~~~~~~L~i~~v~~  254 (356)
                      .+.+...+..+.+.+|++++|.|.+.+.|.+.+.|++++.     .+.         ...++.....++..+|.|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            3445566677889999999999999999999999998531     111         12345555556677999999999


Q ss_pred             CCCeEEEEEEEcCCC
Q psy12422        255 EDEGVYVCTATNSLG  269 (356)
Q Consensus       255 ~d~G~Y~C~a~n~~g  269 (356)
                      +|+|.|.|.|.|..+
T Consensus        92 ~DsG~Y~C~~~n~~~  106 (276)
T 3auv_A           92 EDFATYYCQQHYTTP  106 (276)
T ss_dssp             GGCEEEEEEECSSSS
T ss_pred             hhCEEEEEEEecCCc
Confidence            999999999999744

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.64  E-value=1e-16  Score=125.76  Aligned_cols=119  Identities=14%  Similarity=0.265  Sum_probs=81.9

Q ss_pred             ecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEEe--
Q psy12422        201 IDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT--  278 (356)
Q Consensus       201 v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~--  278 (356)
                      +.+|++++|.|.+   |.+.|.|+|+|..+...       .....+|.|.+++.+|+|.|+|.+.+.... ...+.+.  
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~-~~~v~v~~~   83 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKSK-PLQVYYRMG   83 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSCCC-CEEEEEEC-
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCCCe-eEEEEEEEe
Confidence            4689999999998   88999999999887532       112347999999999999999997654321 1111111  


Q ss_pred             ------------------------------c----CCCCcc----------------ceeEEeC----------------
Q psy12422        279 ------------------------------P----LNSSNI----------------LDLKYKN----------------  292 (356)
Q Consensus       279 ------------------------------p----~~~~~~----------------~~~~~~~----------------  292 (356)
                                                    +    ..+...                ..+.|.+                
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~g~p~p~i~W~k~~~~l~~~~~~~~~~~  163 (204)
T 1sy6_A           84 SADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGS  163 (204)
T ss_dssp             -----------------------------------CCCCEEEEETTEEEEECSCCCSSCEEEEETTEEESCCTTCTTEEE
T ss_pred             ccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcCCCCCCceEEEECCEECCCccCCceEec
Confidence                                          0    000000                0233322                


Q ss_pred             CeEEEEEecC-CCCCCeEEEEEEEcCCcce-EEEEEEEEE
Q psy12422        293 GVASLQIQEV-FPEDEGVYVCTATNSLGTA-ETKCKLTVR  330 (356)
Q Consensus       293 ~~~~L~i~~v-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  330 (356)
                      .+..|.|.++ +.+|+|.|+|.|.|..|.. +..+.|+|+
T Consensus       164 ~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          164 DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence            2357999999 9999999999999999973 556666654

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.64  E-value=9.5e-16  Score=116.56  Aligned_cols=130  Identities=15%  Similarity=0.142  Sum_probs=87.1

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC--Cce--------eEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS--NIL--------DLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~--~~~--------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .+.+.+|++++|.|.+.+ |.+.|.|++++..+..-  ...        .........+|.|.+++.+|+|.|.|.|.|.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            457889999999999854 88899999988654210  000        1122223358999999999999999999999


Q ss_pred             CCceEEEEEEe-cCCCCcc------------------ceeEEeCCeEEE------EEecCCCCCCeEEEEEEEcCCcceE
Q psy12422        268 LGTAETKCKLT-PLNSSNI------------------LDLKYKNGVASL------QIQEVFPEDEGVYVCTATNSLGTAE  322 (356)
Q Consensus       268 ~g~~~~~~~l~-p~~~~~~------------------~~~~~~~~~~~L------~i~~v~~~d~G~Y~C~a~n~~g~~~  322 (356)
                      .|.....+.+. |...|.+                  ..+.|..++..|      .|......|.|.|+|.|+|.+|..+
T Consensus        83 ~~~~~~~L~V~~~~~~p~i~~~~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~~l~~~~~~~~g~Y~C~a~N~~~~~~  162 (171)
T 1ccz_A           83 TDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQES  162 (171)
T ss_dssp             CSCEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSCEEEEEEETTEEEE
T ss_pred             CCcEEEEEEEECcCCCCEEEEecCCcEEEEEeCCCCCcEEEEEECCEECcCCcceEEEEeccCCCceEEEEEEcccCccc
Confidence            88544444443 2211221                  156665433221      2222236789999999999999988


Q ss_pred             EEEEEE
Q psy12422        323 TKCKLT  328 (356)
Q Consensus       323 ~~~~l~  328 (356)
                      ..+.|.
T Consensus       163 ~~~~l~  168 (171)
T 1ccz_A          163 EMEVVN  168 (171)
T ss_dssp             EEECCC
T ss_pred             ceeEEe
Confidence            776653

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.3e-15  Score=108.28  Aligned_cols=90  Identities=27%  Similarity=0.446  Sum_probs=76.1

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...+....+.+|+++.|.|.+.|+|.|.+.|+++|..+... .++.. ...+  +|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~-~~~~--~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQ-LENG--VLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEE-EETT--EEEEESCCGGGCCCEEEEEE
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEE-ccCC--EEEEccCCcCCCEEEEEEEE
Confidence            56788888888899999999999999999999999999999888653 33333 3344  89999999999999999999


Q ss_pred             cCCCceEEEEEEec
Q psy12422        266 NSLGTAETKCKLTP  279 (356)
Q Consensus       266 n~~g~~~~~~~l~p  279 (356)
                      |..|.....+.|..
T Consensus        83 n~~g~~~~~~~l~V   96 (118)
T 2eo9_A           83 TPSGEATWSAYIEV   96 (118)
T ss_dssp             CSSCEEEEECCEEE
T ss_pred             cCCCcEEEEEEEEE
Confidence            99999887777663

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.63  E-value=5.6e-15  Score=116.72  Aligned_cols=129  Identities=17%  Similarity=0.245  Sum_probs=88.0

Q ss_pred             CCceeecCCCeEEEEEEEcCCC---CCeEEEEECC--EEc------------cCCCceeEEEeCCEEEEEEccCCCCCCe
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP---EPRVSWTKNG--QPL------------NSSNILDLKYKNGVASLQIQEVFPEDEG  258 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p---~p~i~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G  258 (356)
                      +..+.+.+|+++.|.|.+.+.|   .+.+.|++++  ..+            ....++......+...|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            5667899999999999999888   4789999852  222            1123444455566779999999999999


Q ss_pred             EEEEEEEcCCCceE---EEEEEe--cCCCCcc----------------------------ceeEEeCC------------
Q psy12422        259 VYVCTATNSLGTAE---TKCKLT--PLNSSNI----------------------------LDLKYKNG------------  293 (356)
Q Consensus       259 ~Y~C~a~n~~g~~~---~~~~l~--p~~~~~~----------------------------~~~~~~~~------------  293 (356)
                      .|.|.|.|..+...   ..+.+.  +..+|.+                            ..+.|.++            
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~  166 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQ  166 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCC
Confidence            99999999875321   122221  0011110                            03444321            


Q ss_pred             -----------eEEEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy12422        294 -----------VASLQIQEVFPEDEGVYVCTATNSLGTAETK  324 (356)
Q Consensus       294 -----------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  324 (356)
                                 .+.|.|..+..+|+|.|+|.|.|.....+..
T Consensus       167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          167 PSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             ceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence                       1358899999999999999999987654443

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.63  E-value=9.2e-15  Score=118.39  Aligned_cols=71  Identities=21%  Similarity=0.395  Sum_probs=54.3

Q ss_pred             CceeecCCCeEEEEEEEcCCC--CCeEEEEECC--EEc-----------------cCCCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTKNG--QPL-----------------NSSNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~g--~~~-----------------~~~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+.+|++++|.|.+.+.|  .+.+.|+|+.  ..+                 ....++.+..+  .+..+|.|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            446899999999999999987  5789999832  111                 11234444443  456789999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy12422        254 PEDEGVYVCTATNS  267 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~  267 (356)
                      .+|+|.|.|.|.|.
T Consensus        90 ~~D~G~Y~C~~~n~  103 (247)
T 2ghw_B           90 AEDTAVYYCARDRS  103 (247)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             HHHCEEEEEeeecc
Confidence            99999999999998

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.63  E-value=3.2e-15  Score=114.53  Aligned_cols=127  Identities=17%  Similarity=0.262  Sum_probs=87.2

Q ss_pred             CceeecCCCeEEEEEEEc--CCCCCeEEEEE--CCEEc----------cCCCceeEEEeCCEEEEEEccCCCCCCeEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVK--GDPEPRVSWTK--NGQPL----------NSSNILDLKYKNGVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~--g~p~p~i~W~~--~g~~~----------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      ..+...+|++++|.|...  +.|.+.|.|++  ++..+          ....++.+. .++  +|.|.+++.+|+|.|+|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~-~ng--sL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF-KNG--TLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC-TTS--CEEECSCCGGGCEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC-CCC--CEEECCCChhhCEEEEE
Confidence            345788999999999542  34567899999  88776          223333332 233  89999999999999999


Q ss_pred             EEEcCCCceEE--EEEEe---cCCCCcc------------------ceeEEeCCeEE-------EEEecCCCCCCeEEEE
Q psy12422        263 TATNSLGTAET--KCKLT---PLNSSNI------------------LDLKYKNGVAS-------LQIQEVFPEDEGVYVC  312 (356)
Q Consensus       263 ~a~n~~g~~~~--~~~l~---p~~~~~~------------------~~~~~~~~~~~-------L~i~~v~~~d~G~Y~C  312 (356)
                      .|.|..|....  .+.|.   +...|.+                  ..+.|..++..       |.+ ....+|+|.|+|
T Consensus        84 ~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l~~~~~~i~~-~~~~~d~G~Y~C  162 (182)
T 1hnf_A           84 SIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITH-KWTTSLSAKFKC  162 (182)
T ss_dssp             EEEETTSCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEESSCEEEEESSCEEE-ECCSCEEEEEEE
T ss_pred             EEEeCCCceeEEEEEEEEEcCcCCCCEEEEccCcEEEEeEccCCCCCEEEEEECCEECCCCCcEEEE-ecccCCCcEEEE
Confidence            99999887543  33333   2112221                  15666554332       333 335789999999


Q ss_pred             EEEcCCcceEEEEEE
Q psy12422        313 TATNSLGTAETKCKL  327 (356)
Q Consensus       313 ~a~n~~g~~~~~~~l  327 (356)
                      .|+|.+|...+...+
T Consensus       163 ~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          163 TAGNKVSKESSVEPV  177 (182)
T ss_dssp             EEECSSCEEEEEEEE
T ss_pred             EEEeCCCCcEEccee
Confidence            999999988876655

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.63  E-value=2.1e-15  Score=101.82  Aligned_cols=72  Identities=15%  Similarity=0.139  Sum_probs=59.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |++++|.|.+.+ |++.|+|||||.++..+ ++.+...++..+|.|.+++.+|+|.|+|.|.|.    ..++.|.|.+
T Consensus        20 G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~~sa~L~V~~   92 (93)
T 1waa_A           20 GETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT----KSAANLKVKE   92 (93)
T ss_dssp             TSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE----EEEEEEEEEC
T ss_pred             CCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC----cEEEEEEEEc
Confidence            789999999976 55889999999999754 555666666779999999999999999999774    4566777753

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=6.6e-16  Score=106.89  Aligned_cols=88  Identities=18%  Similarity=0.292  Sum_probs=74.2

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCC-CeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE-PRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..++.|...+.+..+.+|++++|.|.+.+.|. +.+.|+|||..+....++.+..++...+|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   85 (104)
T 2eny_A            6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR   85 (104)
T ss_dssp             CCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET
T ss_pred             cCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC
Confidence            45567777788899999999999999998885 47999999999988888888878888899999999999999999986


Q ss_pred             cCCCceEEEEEEe
Q psy12422        266 NSLGTAETKCKLT  278 (356)
Q Consensus       266 n~~g~~~~~~~l~  278 (356)
                      |.    ..++.|.
T Consensus        86 ~~----~~~a~L~   94 (104)
T 2eny_A           86 GL----TSKASLI   94 (104)
T ss_dssp             TE----EEEECEE
T ss_pred             Ce----eEEEEEE
Confidence            53    4444444

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=3.8e-16  Score=109.64  Aligned_cols=82  Identities=22%  Similarity=0.338  Sum_probs=69.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-e-eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-Y-SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.|.|.|+|+|..+.... . .....++..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...
T Consensus        24 G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  103 (110)
T 2dm3_A           24 GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK  103 (110)
T ss_dssp             SSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECC
T ss_pred             CCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCC
Confidence            7899999999999999999999999887543 2 2334555679999999999999999999999999999999999876


Q ss_pred             ccch
Q psy12422         79 EESK   82 (356)
Q Consensus        79 ~~~~   82 (356)
                      +..+
T Consensus       104 p~~P  107 (110)
T 2dm3_A          104 ESGP  107 (110)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.63  E-value=4.4e-15  Score=120.73  Aligned_cols=144  Identities=17%  Similarity=0.218  Sum_probs=91.1

Q ss_pred             ccCCceeecCCCeEEEEEEEcCCC--CCeEEEEE--CCEEcc-----------------CCCceeEEEe--CCEEEEEEc
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGDP--EPRVSWTK--NGQPLN-----------------SSNILDLKYK--NGVASLQIQ  250 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~--~g~~~~-----------------~~~~~~~~~~--~~~~~L~i~  250 (356)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|  .+..+.                 ...++....+  .+..+|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   85 (253)
T 3uzq_A            6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS   85 (253)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence            344567899999999999998865  67899998  221110                 1133444333  335679999


Q ss_pred             cCCCCCCeEEEEEEEcCCCceE---EEEEEec-----------------------C-----------------CCCcc--
Q psy12422        251 EVFPEDEGVYVCTATNSLGTAE---TKCKLTP-----------------------L-----------------NSSNI--  285 (356)
Q Consensus       251 ~v~~~d~G~Y~C~a~n~~g~~~---~~~~l~p-----------------------~-----------------~~~~~--  285 (356)
                      +++.+|+|.|.|.|.|..+...   ..+.+..                       .                 ..+..  
T Consensus        86 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  165 (253)
T 3uzq_A           86 SLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYG  165 (253)
T ss_dssp             SCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETT
T ss_pred             CCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCC
Confidence            9999999999999999554321   1111110                       0                 00000  


Q ss_pred             -ceeEEeC-------------------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEec
Q psy12422        286 -LDLKYKN-------------------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTVRST  332 (356)
Q Consensus       286 -~~~~~~~-------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~  332 (356)
                       ..+.|.+                               ....|+|.+++.+|+|.|.|.|.|..+..-. .+.|.|...
T Consensus       166 ~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~  245 (253)
T 3uzq_A          166 NSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRP  245 (253)
T ss_dssp             EECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred             CcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCC
Confidence             0223321                               2346999999999999999999997654433 667888888


Q ss_pred             CCCCC
Q psy12422        333 PAANL  337 (356)
Q Consensus       333 p~~~~  337 (356)
                      +.++.
T Consensus       246 ~~~~~  250 (253)
T 3uzq_A          246 LEHHH  250 (253)
T ss_dssp             -----
T ss_pred             CCCcc
Confidence            77654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.63  E-value=1.9e-15  Score=105.20  Aligned_cols=91  Identities=20%  Similarity=0.263  Sum_probs=78.4

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.|...+.++.+.+|+.+.|.|.+.+.|.+ +.|+++|..+....++.+..++....|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (106)
T 2dlt_A            6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG   84 (106)
T ss_dssp             CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred             CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence            567888888889999999999999999998888 9999999999888888777778788999999999999999999999


Q ss_pred             CCCceEEEEEEe
Q psy12422        267 SLGTAETKCKLT  278 (356)
Q Consensus       267 ~~g~~~~~~~l~  278 (356)
                      ......+.+.+.
T Consensus        85 ~~~~~~~~l~V~   96 (106)
T 2dlt_A           85 YALSLSAKLNFL   96 (106)
T ss_dssp             SCCCCCBCEEEE
T ss_pred             CCceEEEEEEEE
Confidence            855444444443

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=6.2e-16  Score=110.01  Aligned_cols=78  Identities=22%  Similarity=0.347  Sum_probs=66.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|.|.+.|.|||+|..+... .+.....++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.+
T Consensus        23 G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~  100 (118)
T 2eo9_A           23 DGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG  100 (118)
T ss_dssp             TCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT--EEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCS
T ss_pred             CCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC--EEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCC
Confidence            789999999999999999999999988642 222333444  79999999999999999999999999999999998764


Q ss_pred             c
Q psy12422         80 E   80 (356)
Q Consensus        80 ~   80 (356)
                      .
T Consensus       101 ~  101 (118)
T 2eo9_A          101 V  101 (118)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.62  E-value=5.4e-15  Score=116.89  Aligned_cols=79  Identities=14%  Similarity=0.194  Sum_probs=61.0

Q ss_pred             eecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECC--EEc------------cCCCceeEEEeCCEEEEEEccCCCCC
Q psy12422        191 QFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNG--QPL------------NSSNILDLKYKNGVASLQIQEVFPED  256 (356)
Q Consensus       191 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~d  256 (356)
                      .+...+..+.+.+|+++.|.|.+.+.|.+.+.|+|.+  ...            ....++......+..+|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED   82 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence            3444566788999999999999999999999999832  111            01334555555667899999999999


Q ss_pred             CeEEEEEEEcCCC
Q psy12422        257 EGVYVCTATNSLG  269 (356)
Q Consensus       257 ~G~Y~C~a~n~~g  269 (356)
                      +|.|.|.|.|..+
T Consensus        83 ~G~Y~C~~~~~~~   95 (213)
T 3r06_A           83 IGSYYCQQYYNYP   95 (213)
T ss_dssp             CSEEEEEECSSSS
T ss_pred             CEEEEEecccCCc
Confidence            9999999998754

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.62  E-value=5.2e-15  Score=102.40  Aligned_cols=78  Identities=21%  Similarity=0.291  Sum_probs=68.4

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC--ceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      .|+.|...+.++.+.+|+++.|.|.+.+ |.+.+.|+|+|..+....  ++.+..++....|.|.+++.+|+|.|+|.|.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   84 (103)
T 1x44_A            6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTT   84 (103)
T ss_dssp             SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEET
T ss_pred             CCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEEC
Confidence            3455777778889999999999999987 779999999999998777  5577777777899999999999999999998


Q ss_pred             c
Q psy12422        266 N  266 (356)
Q Consensus       266 n  266 (356)
                      |
T Consensus        85 n   85 (103)
T 1x44_A           85 G   85 (103)
T ss_dssp             T
T ss_pred             C
Confidence            8

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=8.5e-16  Score=105.60  Aligned_cols=74  Identities=26%  Similarity=0.437  Sum_probs=63.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|..+.....  ....+...|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        26 G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~   99 (99)
T 2yr3_A           26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYARS--TCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH   99 (99)
T ss_dssp             TCCEEEECEEEEESCCCCEEEESSSBCSSCCC--EEETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEEEC
T ss_pred             CCeEEEEEEEeeeCCCeEEEEECCEECcccce--EeeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEC
Confidence            78999999999999999999999998875542  234455689999999999999999999999998888887763

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.62  E-value=5e-16  Score=108.02  Aligned_cols=76  Identities=21%  Similarity=0.348  Sum_probs=67.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.|.|+|+|..+... ++.+...+...+|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        29 G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             SSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEEC
T ss_pred             CCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            789999999999999999999999988654 4555555566799999999999999999999999999888888875

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=8.8e-16  Score=105.74  Aligned_cols=76  Identities=22%  Similarity=0.397  Sum_probs=64.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|..+... .+.....++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.|.++
T Consensus        23 G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           23 DGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             SSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTC--CEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEESC
T ss_pred             CCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCC--EEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEecC
Confidence            789999999999999999999999988732 222333444  7999999999999999999999999988999998764

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.61  E-value=1.1e-14  Score=118.49  Aligned_cols=138  Identities=22%  Similarity=0.318  Sum_probs=89.6

Q ss_pred             CCceeecCCCeEEEEEEEcCCC--CCeEEEEEC--CEEcc-----------------CCCceeEEEe--CCEEEEEEccC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP--EPRVSWTKN--GQPLN-----------------SSNILDLKYK--NGVASLQIQEV  252 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~L~i~~v  252 (356)
                      +....+.+|++++|.|.+.+.|  .+.+.|+|+  +..+.                 ...++....+  .+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL   86 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence            3456899999999999999886  678999993  22210                 1234444432  45678999999


Q ss_pred             CCCCCeEEEEEEEcCCCc---e----EEEEEEe--------c-----------------C--CCC-----ccceeEE---
Q psy12422        253 FPEDEGVYVCTATNSLGT---A----ETKCKLT--------P-----------------L--NSS-----NILDLKY---  290 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~~g~---~----~~~~~l~--------p-----------------~--~~~-----~~~~~~~---  290 (356)
                      +.+|+|.|.|.|.|..|.   .    ...+.+.        |                 .  ..+     .+.+++.   
T Consensus        87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g  166 (256)
T 1nqb_A           87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPG  166 (256)
T ss_dssp             CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTT
T ss_pred             ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCC
Confidence            999999999999998652   1    1111111        0                 0  111     2222221   


Q ss_pred             -------------------------eCCeEEEEEecCCCCCCeEEEEEEEcCCcce-EEEEEEEEEecC
Q psy12422        291 -------------------------KNGVASLQIQEVFPEDEGVYVCTATNSLGTA-ETKCKLTVRSTP  333 (356)
Q Consensus       291 -------------------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p  333 (356)
                                               ......|+|.+++.+|+|.|+|.|.|..+.. ...+.|.|..++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~  235 (256)
T 1nqb_A          167 QSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRAA  235 (256)
T ss_dssp             SCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC--
T ss_pred             CCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECCC
Confidence                                     0123479999999999999999999864432 225567777554

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.61  E-value=5.8e-16  Score=122.42  Aligned_cols=128  Identities=16%  Similarity=0.251  Sum_probs=87.5

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      +..+.+.+|+++.|.|.+.+.|.+.+.|+++  |..+.            ...++......+...|.|.+++.+|+|.|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            4567899999999999999988889999984  33221            124455555666789999999999999999


Q ss_pred             EEEEcCCCc-----eEEEEEEe--cCCCCcc----------------------------ceeEEeCC-------------
Q psy12422        262 CTATNSLGT-----AETKCKLT--PLNSSNI----------------------------LDLKYKNG-------------  293 (356)
Q Consensus       262 C~a~n~~g~-----~~~~~~l~--p~~~~~~----------------------------~~~~~~~~-------------  293 (356)
                      |.|.|..+.     ....+.+.  +..+|.+                            ..+.|.++             
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  165 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP  165 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCc
Confidence            999973221     11222221  1111110                            13444331             


Q ss_pred             ---------eEEEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy12422        294 ---------VASLQIQEVFPEDEGVYVCTATNSLGTAET  323 (356)
Q Consensus       294 ---------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  323 (356)
                               .+.|.|.++..+|+|.|+|.|.|..+..+.
T Consensus       166 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          166 SKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK  204 (212)
T ss_dssp             BCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             eecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence                     134889999999999999999999876443

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=3.5e-15  Score=103.30  Aligned_cols=79  Identities=22%  Similarity=0.387  Sum_probs=71.7

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..||.+...+.+..+.+|+++.|.|.+.+ |.+.+.|+++|..+....++.+..++....|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A            6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            56778888888899999999999999997 88899999999999888888777777788999999999999999999999

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.61  E-value=4.9e-15  Score=110.57  Aligned_cols=80  Identities=21%  Similarity=0.407  Sum_probs=68.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-eeEEe-cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.|.|.|||+|..+.... +.+.. .++...|+|.+++.+|+|.|+|.|.|..|.....+.|.|...
T Consensus        56 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~  135 (154)
T 1fhg_A           56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM  135 (154)
T ss_dssp             TSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEeCc
Confidence            7899999999999999999999999997653 33332 355679999999999999999999999999999999999876


Q ss_pred             cc
Q psy12422         79 EE   80 (356)
Q Consensus        79 ~~   80 (356)
                      +.
T Consensus       136 p~  137 (154)
T 1fhg_A          136 GK  137 (154)
T ss_dssp             --
T ss_pred             Cc
Confidence            43

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.61  E-value=7.8e-15  Score=118.11  Aligned_cols=75  Identities=17%  Similarity=0.263  Sum_probs=53.5

Q ss_pred             ccCCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEc---------------cCCCceeEEE-eCCEEEEEEccCCCC
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPL---------------NSSNILDLKY-KNGVASLQIQEVFPE  255 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~---------------~~~~~~~~~~-~~~~~~L~i~~v~~~  255 (356)
                      ..+..+.+.+|++++|.|. .+.|.+.+.|+|+  +..+               ....++.... .....+|.|.+++.+
T Consensus         5 q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~   83 (238)
T 2p1y_A            5 QSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPS   83 (238)
T ss_dssp             EECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGG
T ss_pred             ECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcc
Confidence            3456778999999999999 7889999999994  2111               0122333332 223458999999999


Q ss_pred             CCeEEEEEEEcCCC
Q psy12422        256 DEGVYVCTATNSLG  269 (356)
Q Consensus       256 d~G~Y~C~a~n~~g  269 (356)
                      |+|.|.|.|.|..|
T Consensus        84 DsG~Y~C~~~~~~g   97 (238)
T 2p1y_A           84 QTSVYFCASGDLGQ   97 (238)
T ss_dssp             GCEEEEEEEEC---
T ss_pred             cCeeEEEEEEeCCC
Confidence            99999999999865

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=2.6e-15  Score=106.11  Aligned_cols=102  Identities=18%  Similarity=0.323  Sum_probs=79.6

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .++.+...+.+..+.+|+++.|.|.+.|.|.|.+.|+++|..+....++.+..                           
T Consensus        12 ~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~---------------------------   64 (115)
T 2cr6_A           12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDA---------------------------   64 (115)
T ss_dssp             SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCC---------------------------
T ss_pred             CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEE---------------------------
Confidence            34577777888999999999999999999999999999998775443221100                           


Q ss_pred             CCceEEEEEEecCCCCccceeEEeCCeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCCCCCCCCC
Q psy12422        268 LGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAANLGKSPS  342 (356)
Q Consensus       268 ~g~~~~~~~l~p~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~  342 (356)
                                            .......|.|.+++.+|+|.|+|.+    |.....+.|.|..+|.+...+.|+
T Consensus        65 ----------------------~~~~~~~L~I~~v~~~D~G~Y~C~~----g~~~~~~~L~V~~~p~~~~~~~~~  113 (115)
T 2cr6_A           65 ----------------------QPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGPS  113 (115)
T ss_dssp             ----------------------BTTTBCCBEECSCCTTTCEEEEEEE----TTEECCEEEEEECCSSCCSSSCSS
T ss_pred             ----------------------cCCCEEEEEEcCCChhhCEEEEEEE----CCeeEEEEEEEECCCceeccCCCC
Confidence                                  0113457899999999999999984    777888999999999888777665

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.61  E-value=6.7e-16  Score=123.74  Aligned_cols=82  Identities=21%  Similarity=0.305  Sum_probs=58.9

Q ss_pred             CCceeecCCCeEEEEEEEcCCCC-CeEEEEECCEEcc---------CCCcee--EE----------EeCCEEEEEEccCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPE-PRVSWTKNGQPLN---------SSNILD--LK----------YKNGVASLQIQEVF  253 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~~g~~~~---------~~~~~~--~~----------~~~~~~~L~i~~v~  253 (356)
                      +..+.+.+|+++.|.|.+.+.|. +.+.|++++....         ....+.  ..          ... ...|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~L~i~~v~   85 (231)
T 2pet_A            7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS-QGRLVLAEAQ   85 (231)
T ss_dssp             CSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECT-TCCEEESSCC
T ss_pred             CCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCC-CceEEEcccC
Confidence            45678999999999999999985 8899998543311         011011  11          111 1249999999


Q ss_pred             CCCCeEEEEEEEcCC-CceEEEEEEe
Q psy12422        254 PEDEGVYVCTATNSL-GTAETKCKLT  278 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~-g~~~~~~~l~  278 (356)
                      .+|+|.|+|.|.|.. +.....+.|.
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~  111 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLN  111 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEE
T ss_pred             cccCceEEEEEEecCCCceEEEEEEE
Confidence            999999999999987 6666665555

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.61  E-value=9.5e-15  Score=118.98  Aligned_cols=140  Identities=21%  Similarity=0.278  Sum_probs=87.3

Q ss_pred             CceeecCCCeEEEEEEEcCCC--CCeEEEEEC--CEEcc-----------------CCCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTKN--GQPLN-----------------SSNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+.+|++++|.|.+.+.|  .+.+.|++.  +..+.                 ...++....+  ....+|.|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            345689999999999999877  678999982  21110                 1123333332  345679999999


Q ss_pred             CCCCeEEEEEEEcCC----CceEEEEEEecCC----------------CCccc--------------------------e
Q psy12422        254 PEDEGVYVCTATNSL----GTAETKCKLTPLN----------------SSNIL--------------------------D  287 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~----g~~~~~~~l~p~~----------------~~~~~--------------------------~  287 (356)
                      .+|+|.|.|.|.|..    +.......|.+..                .+.+.                          .
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~  169 (256)
T 3umt_A           90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSN  169 (256)
T ss_dssp             GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTC
T ss_pred             cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcE
Confidence            999999999999872    1111111111110                11100                          2


Q ss_pred             eEEeC-------------------------------CeEEEEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEecCCC
Q psy12422        288 LKYKN-------------------------------GVASLQIQEVFPEDEGVYVCTATNSLGTAET-KCKLTVRSTPAA  335 (356)
Q Consensus       288 ~~~~~-------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~  335 (356)
                      +.|.+                               ....|+|.+++.+|+|.|.|.|.|..+..-. .+.|.|+.+++.
T Consensus       170 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~~~  249 (256)
T 3umt_A          170 LNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAAAL  249 (256)
T ss_dssp             EEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-----
T ss_pred             EEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCCcc
Confidence            33321                               2335999999999999999999997554433 678999988765


Q ss_pred             C
Q psy12422        336 N  336 (356)
Q Consensus       336 ~  336 (356)
                      .
T Consensus       250 ~  250 (256)
T 3umt_A          250 E  250 (256)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.61  E-value=1.6e-14  Score=99.36  Aligned_cols=91  Identities=25%  Similarity=0.340  Sum_probs=76.8

Q ss_pred             CCCeecccCCc-eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        188 TPPQFANKLTD-KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       188 ~~p~~~~~~~~-~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      .+|.|...+.+ ..+.+|+++.|.|.+. .|.|.+.|+++|..+....++.+..++....|.|.+++.+|+|.|+|.|  
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            46777766655 6889999999999998 7999999999999998888888877787889999999999999999999  


Q ss_pred             CCCceEEEEEEecCCCC
Q psy12422        267 SLGTAETKCKLTPLNSS  283 (356)
Q Consensus       267 ~~g~~~~~~~l~p~~~~  283 (356)
                        |....++.|.+..+|
T Consensus        83 --g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 --GDEKCSTELFVRSGP   97 (100)
T ss_dssp             --TTEEEEEEEEECCSC
T ss_pred             --CCceEEEEEEEecCC
Confidence              667777777655443

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.60  E-value=3.3e-14  Score=100.13  Aligned_cols=88  Identities=25%  Similarity=0.413  Sum_probs=75.2

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .||.+...+.+..+.+|+++.|.|.+.+.  |.+.|+|++..+....++.+..++....|.|.+++.+|+|.|+|.|   
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---   92 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC---   92 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE---
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe---
Confidence            45678777888899999999999999775  7899999999998888888887887889999999999999999999   


Q ss_pred             CCceEEEEEEecCC
Q psy12422        268 LGTAETKCKLTPLN  281 (356)
Q Consensus       268 ~g~~~~~~~l~p~~  281 (356)
                       +.....+.|....
T Consensus        93 -~~~~~~~~l~V~~  105 (113)
T 2edh_A           93 -GKERTSAMLTVRA  105 (113)
T ss_dssp             -TTEEEEEEEEECC
T ss_pred             -CCCCEEEEEEEeC
Confidence             6666666666443

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.60  E-value=2.9e-14  Score=108.05  Aligned_cols=68  Identities=15%  Similarity=0.157  Sum_probs=49.1

Q ss_pred             eeecCCCeEEEEEEEcC-CCCC--eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        199 KTIDDGQCLDLSAVVKG-DPEP--RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g-~p~p--~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ..+.+|+.++|.|.+.| .|.+  .|+|+|++..+....   ........+|++...+.+|.+.|+|+|.|..+
T Consensus        96 ~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~---~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A           96 SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP---AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE---CCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             ccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc---CCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence            35789999999999977 5554  489999999886422   00112234678776666666699999999887

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.60  E-value=1.5e-14  Score=116.28  Aligned_cols=137  Identities=15%  Similarity=0.224  Sum_probs=92.7

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECC--EEc------------cCCCceeEEEeCCEEEEEEccCCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNG--QPL------------NSSNILDLKYKNGVASLQIQEVFPE  255 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~  255 (356)
                      +.+...+....+.+|+++.|.|.+.+.|.+.+.|+|++  ...            ....++......+..+|.|.+++.+
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  104 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE  104 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence            44555567788999999999999999999999999832  111            1134555555667789999999999


Q ss_pred             CCeEEEEEEEcCCCce---EEEEEEe-cCC----------------------------CCccceeEEeCC----------
Q psy12422        256 DEGVYVCTATNSLGTA---ETKCKLT-PLN----------------------------SSNILDLKYKNG----------  293 (356)
Q Consensus       256 d~G~Y~C~a~n~~g~~---~~~~~l~-p~~----------------------------~~~~~~~~~~~~----------  293 (356)
                      |+|.|.|.|.|..+..   ...+.+. +..                            .|....+.|.++          
T Consensus       105 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~  184 (237)
T 3sob_L          105 DFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE  184 (237)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred             hCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceee
Confidence            9999999998876421   1122221 000                            010113344321          


Q ss_pred             --------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy12422        294 --------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  326 (356)
Q Consensus       294 --------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  326 (356)
                                    .+.|.|..+..+|+|.|+|+|.|..........
T Consensus       185 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  231 (237)
T 3sob_L          185 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKS  231 (237)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEE
T ss_pred             cccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeee
Confidence                          246889999999999999999998765444333

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.60  E-value=1e-14  Score=101.80  Aligned_cols=92  Identities=24%  Similarity=0.259  Sum_probs=71.1

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCC---CeEEEEECCEEccC---CCceeEEE--e----CCEEEEEEccCCCC
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPE---PRVSWTKNGQPLNS---SNILDLKY--K----NGVASLQIQEVFPE  255 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~---p~i~W~~~g~~~~~---~~~~~~~~--~----~~~~~L~i~~v~~~  255 (356)
                      ..|.|...+..+.+.+|++++|.|.+.|.|.   |.|.|+|++.....   ...+.+..  .    .....|.|.+++.+
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            4577777888889999999999999999998   99999998732211   12222221  1    12468999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEec
Q psy12422        256 DEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       256 d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      |+|.|+|.|.|..|...+++.|.+
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V  106 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTV  106 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEE
Confidence            999999999999999998888763

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.60  E-value=1.4e-15  Score=106.33  Aligned_cols=79  Identities=27%  Similarity=0.483  Sum_probs=57.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE   80 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~   80 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|..+........ ..+...|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.+.
T Consensus        25 G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             TCCEEEECBCC----CCEEEEESSSBCCCBTTEEE-ETTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC---
T ss_pred             CCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEE-eCCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeCCCc
Confidence            78999999999999999999999998865432222 22334899999999999999999999999999999999987644

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.60  E-value=1.8e-14  Score=97.99  Aligned_cols=86  Identities=24%  Similarity=0.405  Sum_probs=73.1

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      ..+.|...+.+..+.+|+++.|.|.+ +.|.+.+.|+++|..+....++.+..++....|.|.+++.+|+|.|+|.|   
T Consensus         7 ~~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---   82 (95)
T 2k1m_A            7 PVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA---   82 (95)
T ss_dssp             CCCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE---
T ss_pred             CCCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE---
Confidence            34667777788899999999999999 78999999999999998877777777777889999999999999999999   


Q ss_pred             CCceEEEEEEe
Q psy12422        268 LGTAETKCKLT  278 (356)
Q Consensus       268 ~g~~~~~~~l~  278 (356)
                       |....++.|.
T Consensus        83 -g~~~~~~~l~   92 (95)
T 2k1m_A           83 -GSSKVKFDLK   92 (95)
T ss_dssp             -TTEEEEEEEE
T ss_pred             -CCceEEEEEE
Confidence             4555555553

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.60  E-value=1.6e-14  Score=116.63  Aligned_cols=78  Identities=18%  Similarity=0.209  Sum_probs=60.3

Q ss_pred             ecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECC--EE---cc---------CCCceeEEEeCCEEEEEEccCCCCCC
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNG--QP---LN---------SSNILDLKYKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g--~~---~~---------~~~~~~~~~~~~~~~L~i~~v~~~d~  257 (356)
                      +...+..+.+.+|++++|.|.+.+.|.+.+.|+|+.  ..   +.         ...++.....++..+|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence            344556778999999999999999999999999842  11   10         12344444456677999999999999


Q ss_pred             eEEEEEEEcCCC
Q psy12422        258 GVYVCTATNSLG  269 (356)
Q Consensus       258 G~Y~C~a~n~~g  269 (356)
                      |.|.|.|.|..+
T Consensus        84 G~Y~C~~~n~~~   95 (242)
T 2znx_A           84 GMYFCQQSNSXP   95 (242)
T ss_dssp             EEEEEEECSSSS
T ss_pred             EEEEEeEecCCc
Confidence            999999999754

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.60  E-value=4.4e-14  Score=114.60  Aligned_cols=80  Identities=18%  Similarity=0.204  Sum_probs=61.8

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCE-----E---------ccCCCceeEEEeCCEEEEEEccCCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ-----P---------LNSSNILDLKYKNGVASLQIQEVFPE  255 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~-----~---------~~~~~~~~~~~~~~~~~L~i~~v~~~  255 (356)
                      ..+...+..+.+.+|++++|.|.+.+.|.+.+.|+|+..     .         .....++.........+|.|.+++.+
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            344455667789999999999999999999999998421     1         11123455555566779999999999


Q ss_pred             CCeEEEEEEEcCCC
Q psy12422        256 DEGVYVCTATNSLG  269 (356)
Q Consensus       256 d~G~Y~C~a~n~~g  269 (356)
                      |+|.|.|.|.|..+
T Consensus        85 D~G~Y~C~~~n~~~   98 (250)
T 3esu_F           85 DIGTYFCQQGNTLP   98 (250)
T ss_dssp             GCEEEEEEECSSSS
T ss_pred             hCEEEEEEEeeCCC
Confidence            99999999998754

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.59  E-value=2.5e-14  Score=116.57  Aligned_cols=75  Identities=21%  Similarity=0.345  Sum_probs=54.2

Q ss_pred             cccCCceeecCCCeEEEEEEEcCC--CCCeEEEEECC--E--E-c-------------cCCCceeEEEe--CCEEEEEEc
Q psy12422        193 ANKLTDKTIDDGQCLDLSAVVKGD--PEPRVSWTKNG--Q--P-L-------------NSSNILDLKYK--NGVASLQIQ  250 (356)
Q Consensus       193 ~~~~~~~~v~~g~~~~l~C~~~g~--p~p~i~W~~~g--~--~-~-------------~~~~~~~~~~~--~~~~~L~i~  250 (356)
                      ...+....+.+|++++|.|.+.+.  |.+.+.|+|..  .  . +             ....++....+  .+..+|.|.
T Consensus        12 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   91 (257)
T 3gkz_A           12 LQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLK   91 (257)
T ss_dssp             EEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEEC
Confidence            344456679999999999999884  47789999832  1  1 1             01123333322  345689999


Q ss_pred             cCCCCCCeEEEEEEEcC
Q psy12422        251 EVFPEDEGVYVCTATNS  267 (356)
Q Consensus       251 ~v~~~d~G~Y~C~a~n~  267 (356)
                      +++.+|+|.|.|.|.|.
T Consensus        92 ~v~~~DsG~Y~C~~~n~  108 (257)
T 3gkz_A           92 SVSSEDTATYYCSYFDS  108 (257)
T ss_dssp             SCCGGGCEEEEEEEECT
T ss_pred             CCChhhCEEEEEEEecC
Confidence            99999999999999997

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.59  E-value=1.1e-14  Score=115.26  Aligned_cols=134  Identities=15%  Similarity=0.235  Sum_probs=85.4

Q ss_pred             CCceeecCCCeEEEEEEEcCC-------CCCeEEEEECCEEcc-----------------CCCceeEEE--eCCEEEEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGD-------PEPRVSWTKNGQPLN-----------------SSNILDLKY--KNGVASLQI  249 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~-------p~p~i~W~~~g~~~~-----------------~~~~~~~~~--~~~~~~L~i  249 (356)
                      +..+.+.+|+++.|.|.+.+.       +.+.+.|+|++....                 ...++.+..  ..+..+|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            456789999999999999754       567899999765310                 012222211  123457999


Q ss_pred             ccCCCCCCeEEEEEEEcCCCce------EEEEEEe-cCCCCc---------------------------cceeEEeC---
Q psy12422        250 QEVFPEDEGVYVCTATNSLGTA------ETKCKLT-PLNSSN---------------------------ILDLKYKN---  292 (356)
Q Consensus       250 ~~v~~~d~G~Y~C~a~n~~g~~------~~~~~l~-p~~~~~---------------------------~~~~~~~~---  292 (356)
                      .+++.+|+|.|.|.+.|..+..      ...+.+. +...|.                           ...+.|.+   
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~  166 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNAL  166 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSCCEEEEESSTT
T ss_pred             ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCCceEEEeCCCC
Confidence            9999999999999999876321      2223222 000010                           11455653   


Q ss_pred             --------CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy12422        293 --------GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV  329 (356)
Q Consensus       293 --------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  329 (356)
                              ..+.|.|..+..+|+|.|+|.|.|..+.......+.+
T Consensus       167 ~~~~~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l  211 (214)
T 2zg1_A          167 SPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL  211 (214)
T ss_dssp             SSSCSSCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEEC
T ss_pred             ccCCCCceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEE
Confidence                    2468999999999999999999998765444444433

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.59  E-value=5.4e-15  Score=100.62  Aligned_cols=71  Identities=23%  Similarity=0.345  Sum_probs=60.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.| |.+.|+|+|..+....+ ....++  .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        24 G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~-~~~~~~--~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           24 GDLLQLRCRLRDDV-QSINWLRDGVQLVESNR-TRITGE--EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             TSCEEEECCEESSC-CEEEEEBTTBCCCCCSS-EEECSS--EEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCC-CceEEEECCEecCCCCC-EEEeCC--EEEECCCChHHCEEEEEEeccCCCcEEEEEEEEE
Confidence            78999999999998 79999999998875443 222333  8999999999999999999999999988888876

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.59  E-value=1.8e-15  Score=104.14  Aligned_cols=75  Identities=23%  Similarity=0.382  Sum_probs=62.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCe--eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.+.|+|+|..+.....  .....++..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        23 G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           23 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             TCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEE
Confidence            78999999999999999999999999865321  1122223348999999999999999999999999988888876

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.59  E-value=1.3e-14  Score=118.18  Aligned_cols=81  Identities=15%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCC--CCCeEEEEEC--CEEcc-----------------CCCceeEEEe--CC
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGD--PEPRVSWTKN--GQPLN-----------------SSNILDLKYK--NG  243 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~--p~p~i~W~~~--g~~~~-----------------~~~~~~~~~~--~~  243 (356)
                      ..++.+...+..+.+.+|++++|.|.+.+.  |.+.+.|+|.  +..+.                 ...++....+  .+
T Consensus         4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   83 (256)
T 3juy_B            4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN   83 (256)
T ss_dssp             ---CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred             ccceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence            345666777788999999999999999874  6778999973  21110                 0123444422  44


Q ss_pred             EEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        244 VASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       244 ~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      ..+|.|.+++.+|+|.|.|.|.|.
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGE  107 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCC
T ss_pred             EEEEEECCCCcccCEEEEEeEEec
Confidence            678999999999999999999997

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.59  E-value=1.3e-15  Score=104.83  Aligned_cols=82  Identities=24%  Similarity=0.509  Sum_probs=67.6

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee-EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD-LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....... ........+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   95 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   95 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEE
Confidence            45778999999999999999999999999999887543321 12223334899999999999999999999999988887


Q ss_pred             EEe
Q psy12422        276 KLT  278 (356)
Q Consensus       276 ~l~  278 (356)
                      .|.
T Consensus        96 ~l~   98 (100)
T 3caf_A           96 HLD   98 (100)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.59  E-value=8.8e-15  Score=101.21  Aligned_cols=75  Identities=19%  Similarity=0.252  Sum_probs=62.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |++++|.|.+.+ |.+.|+|||||..+...   ++.+...+....|.|.+++.+|+|.|+|.|.|    ....+.|.|..
T Consensus        22 G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~~l~V~~   96 (103)
T 1x44_A           22 GERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLSVDL   96 (103)
T ss_dssp             TEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEEEEC
T ss_pred             CCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----CcEEEEEEEeC
Confidence            789999999977 77999999999999754   44566666677999999999999999999977    56777888876


Q ss_pred             ccc
Q psy12422         78 EEE   80 (356)
Q Consensus        78 ~~~   80 (356)
                      .+.
T Consensus        97 ~p~   99 (103)
T 1x44_A           97 KSG   99 (103)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            543

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.58  E-value=9.6e-15  Score=117.27  Aligned_cols=130  Identities=19%  Similarity=0.221  Sum_probs=87.5

Q ss_pred             CCceeecCCCeEEEEEEEcCCCC-C-eEEEEECC--EEc------------cCCCceeEEEeCCEEEEEEccCCCCCCeE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPE-P-RVSWTKNG--QPL------------NSSNILDLKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~-p-~i~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      +....+.+|++++|.|.+.+.++ + .+.|+|++  ..+            ....++......+...|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            55678899999999999987653 4 69999853  221            01234444445667799999999999999


Q ss_pred             EEEEEEcCCCce-----EEEEEEe--cCCCCcc----------------------------ceeEEeCC-----------
Q psy12422        260 YVCTATNSLGTA-----ETKCKLT--PLNSSNI----------------------------LDLKYKNG-----------  293 (356)
Q Consensus       260 Y~C~a~n~~g~~-----~~~~~l~--p~~~~~~----------------------------~~~~~~~~-----------  293 (356)
                      |.|.|.|..+..     ...+.+.  +..+|.+                            ..+.|.++           
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  185 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT  185 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence            999999988721     1111110  0000100                            13444321           


Q ss_pred             ------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy12422        294 ------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKC  325 (356)
Q Consensus       294 ------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  325 (356)
                                  .+.|.|.++..+|+|.|+|.|.|..+..+..+
T Consensus       186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             CCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence                        14588999999999999999999987755544

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.58  E-value=1.3e-14  Score=116.96  Aligned_cols=78  Identities=19%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             ecccCCceeecCCCeEEEEEEEcCCC----CCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCC
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVVKGDP----EPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVF  253 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~~g~p----~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~  253 (356)
                      +...+....+.+|++++|.|.+.+.|    .+.+.|+|+  +..+.            ...++.....++..+|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence            34455677899999999999999998    788999995  22110            1234555555667789999999


Q ss_pred             CCCCeEEEEEEEcCCC
Q psy12422        254 PEDEGVYVCTATNSLG  269 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~g  269 (356)
                      .+|+|.|.|.|.|..+
T Consensus        84 ~~D~G~Y~C~~~n~~~   99 (240)
T 1moe_A           84 ADDVATYYCQQTNEDP   99 (240)
T ss_dssp             GGGCEEEEEEECSSSS
T ss_pred             hhhCEEEEEEEccCCc
Confidence            9999999999999854

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.58  E-value=2.6e-14  Score=116.11  Aligned_cols=81  Identities=16%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCC-----CCeEEEEECC--EEc------------cCCCceeEEEeCCEEEEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDP-----EPRVSWTKNG--QPL------------NSSNILDLKYKNGVASLQI  249 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-----~p~i~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i  249 (356)
                      .+.+...+..+.+.+|++++|.|.+.+.|     .+.+.|+|++  ..+            ....++.....++..+|.|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            34455556778899999999999999988     6889999954  111            0123444555566779999


Q ss_pred             ccCCCCCCeEEEEEEEcCCC
Q psy12422        250 QEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       250 ~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      .+++.+|+|.|.|.|.|..+
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~  133 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVP  133 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSS
T ss_pred             CCCCcccCEEEEEEEEcCCc
Confidence            99999999999999999765

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=6e-15  Score=102.92  Aligned_cols=94  Identities=19%  Similarity=0.241  Sum_probs=71.5

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCC---CCCeEEEEECCE-EccC--CCceeEEE--eC----CEEEEEEccCCC
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGD---PEPRVSWTKNGQ-PLNS--SNILDLKY--KN----GVASLQIQEVFP  254 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~---p~p~i~W~~~g~-~~~~--~~~~~~~~--~~----~~~~L~i~~v~~  254 (356)
                      ...+.|...|.++.+.+|++++|.|.+.|.   |.|.|.|||+.. .+..  ...+.+..  ..    ....|.|.++..
T Consensus        10 ~~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   89 (118)
T 2edn_A           10 EPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVL   89 (118)
T ss_dssp             CCSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCT
T ss_pred             CCcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCCh
Confidence            345667777888999999999999999875   789999999752 2221  12333321  11    147899999999


Q ss_pred             CCCeEEEEEEEcCCCceEEEEEEecC
Q psy12422        255 EDEGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       255 ~d~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      +|+|.|+|+|.|..|...+.+.|.+.
T Consensus        90 ~D~G~Y~Cevsn~~g~~s~~~~L~V~  115 (118)
T 2edn_A           90 GDRGYYRLEVKAKDTCDSCGFNIDVE  115 (118)
T ss_dssp             TTCSCEEEEEECSSCEEEEEECCEEE
T ss_pred             hhCEEEEEEEEEcCCcEEEEEEEEEE
Confidence            99999999999999988888877643

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=2.3e-14  Score=101.76  Aligned_cols=93  Identities=28%  Similarity=0.424  Sum_probs=71.5

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeC----CEEEEEEccCCCCCCeEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN----GVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      ..||.+..... ..  ......|.|.+.|+|.|.+.|+|+|..+............    ..+.|.|.+++.+|+|.|+|
T Consensus         6 ~~pP~i~~~~~-~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   82 (118)
T 1wwc_A            6 YYPPRVVSLEE-PE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL   82 (118)
T ss_dssp             CCCCCCCCCCC-CC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             ecCCceeccCC-Ce--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEE
Confidence            45565544322 12  2366788999999999999999999999877655444322    34689999999999999999


Q ss_pred             EEEcCCCceEEEEEEecCCC
Q psy12422        263 TATNSLGTAETKCKLTPLNS  282 (356)
Q Consensus       263 ~a~n~~g~~~~~~~l~p~~~  282 (356)
                      .|.|..|....++.+.....
T Consensus        83 ~a~N~~G~~~~~~~l~v~~~  102 (118)
T 1wwc_A           83 IAKNPLGTANQTINGHFLKE  102 (118)
T ss_dssp             EEEETTEEEEEEEEECCSCC
T ss_pred             EEECCCCeEeeEEEEEEccC
Confidence            99999999999998874433

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.58  E-value=1.4e-14  Score=115.07  Aligned_cols=74  Identities=20%  Similarity=0.327  Sum_probs=55.2

Q ss_pred             CCceeecCCCeEEEEEEEcCCC--CCeEEEEEC--CEEcc-----------------CCCceeEEEe--CCEEEEEEccC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP--EPRVSWTKN--GQPLN-----------------SSNILDLKYK--NGVASLQIQEV  252 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~L~i~~v  252 (356)
                      +..+.+.+|++++|.|.+.+.|  .+.+.|+|+  |..+.                 ...++....+  .+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            3456789999999999999876  678999996  33221                 0123333322  34578999999


Q ss_pred             CCCCCeEEEEEEEcCCC
Q psy12422        253 FPEDEGVYVCTATNSLG  269 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~~g  269 (356)
                      +.+|+|.|.|.|.|..+
T Consensus        87 ~~~D~G~Y~C~~~~~~~  103 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIV  103 (219)
T ss_dssp             CGGGCEEEEEEEEETTT
T ss_pred             CcccCEEEEEEEeccCc
Confidence            99999999999999863

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=1.2e-14  Score=100.49  Aligned_cols=79  Identities=23%  Similarity=0.408  Sum_probs=68.0

Q ss_pred             CCCCeecccCCc-eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        187 MTPPQFANKLTD-KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       187 ~~~p~~~~~~~~-~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ..+|.|...+.+ ..+.+|+++.|.|.+ +.|.+.+.|+++|..+... .++.+..++....|.|.+++.+|+|.|+|.|
T Consensus        13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   91 (104)
T 1pd6_A           13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV   91 (104)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence            556777766655 789999999999999 7899999999999998876 6777777777789999999999999999999


Q ss_pred             Ec
Q psy12422        265 TN  266 (356)
Q Consensus       265 ~n  266 (356)
                      .|
T Consensus        92 ~~   93 (104)
T 1pd6_A           92 GG   93 (104)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=3.1e-15  Score=105.59  Aligned_cols=92  Identities=23%  Similarity=0.286  Sum_probs=70.4

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCC---CCCeEEEEECCEE-cc--CCCceeEE--EeC----CEEEEEEccCCCCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGD---PEPRVSWTKNGQP-LN--SSNILDLK--YKN----GVASLQIQEVFPEDE  257 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~---p~p~i~W~~~g~~-~~--~~~~~~~~--~~~----~~~~L~i~~v~~~d~  257 (356)
                      |.|...|.++.+.+|++++|.|.+.|.   |.|.|.|||++.. +.  ...++.+.  ...    ....|.|.+++.+|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            557777888899999999999999764   8999999997421 11  12333332  111    147899999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEecCC
Q psy12422        258 GVYVCTATNSLGTAETKCKLTPLN  281 (356)
Q Consensus       258 G~Y~C~a~n~~g~~~~~~~l~p~~  281 (356)
                      |.|+|+|.|..|...+++.|.+..
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999988888877443

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=7.4e-15  Score=100.75  Aligned_cols=76  Identities=21%  Similarity=0.324  Sum_probs=63.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE   80 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~   80 (356)
                      |+++.|.|.+.|.| |.|+|+|+|..+..... ....++  .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.+.
T Consensus        18 G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~-~~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~   93 (99)
T 2cr3_A           18 GDLLQLRCRLRDDV-QSINWLRDGVQLAESNR-TRITGE--EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP   93 (99)
T ss_dssp             TSCEEEECCCCSSC-CEEEEEESSSBCCCCSS-EEECSS--EEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCSCCS
T ss_pred             CCcEEEEEEecCCC-CeEEEEECCEECCCCCc-EEEECC--EEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEecCCC
Confidence            78999999999987 79999999988865432 222233  899999999999999999999999998888888876543

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.7e-15  Score=104.44  Aligned_cols=80  Identities=23%  Similarity=0.358  Sum_probs=70.2

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC----ceeEEEeCCEEEEEEccCCCCCCeEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN----ILDLKYKNGVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      ..||.|...+.+..+.+|+.+.|.|.+.+.| +.+.|+|+|..+....    ++.+..++....|.|.+++.+|+|.|+|
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   84 (101)
T 2edk_A            6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQV   84 (101)
T ss_dssp             CCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEE
T ss_pred             cCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEE
Confidence            4567787778889999999999999999988 9999999999988766    5566777777899999999999999999


Q ss_pred             EEEcC
Q psy12422        263 TATNS  267 (356)
Q Consensus       263 ~a~n~  267 (356)
                      .|.|.
T Consensus        85 ~a~n~   89 (101)
T 2edk_A           85 ITNGG   89 (101)
T ss_dssp             ECSSC
T ss_pred             EEcCC
Confidence            99983

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.57  E-value=1.9e-15  Score=108.17  Aligned_cols=93  Identities=22%  Similarity=0.410  Sum_probs=76.8

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEccC--CCceeEE--EeCC--EEEEEEccCCCCCC-e
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNS--SNILDLK--YKNG--VASLQIQEVFPEDE-G  258 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~--~~~~~~~--~~~~--~~~L~i~~v~~~d~-G  258 (356)
                      ..+|.+.. +....+.+|+.+.|.|.+.|+|.|. +.|++++..+..  ..++.+.  ....  .++|.|.+++.+|. |
T Consensus        12 ~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G   90 (122)
T 2cry_A           12 NGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQT   90 (122)
T ss_dssp             CSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHS
T ss_pred             ecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCc
Confidence            56777777 7778899999999999999999997 999999988875  2344432  2233  56899999999998 9


Q ss_pred             EEEEEEEcCCCceEEEEEEecC
Q psy12422        259 VYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       259 ~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      .|+|.|.|..|.....+.|...
T Consensus        91 ~Y~C~a~N~~G~~~~~~~l~V~  112 (122)
T 2cry_A           91 IYNCTAWNSFGSDTEIIRLKEQ  112 (122)
T ss_dssp             CEEEEEECSSCEEEEEECCCCS
T ss_pred             eEEEEEECCCCeEEEEEEEEEC
Confidence            9999999999999988887743

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.57  E-value=3.7e-14  Score=112.36  Aligned_cols=74  Identities=19%  Similarity=0.174  Sum_probs=56.1

Q ss_pred             CCceeecCCCeEEEEEEE-cCCC-CCeEEEEECC--EEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeE
Q psy12422        196 LTDKTIDDGQCLDLSAVV-KGDP-EPRVSWTKNG--QPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~-~g~p-~p~i~W~~~g--~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      +....+.+|+++.|.|.+ .+.+ .+.+.|+|++  ..+.            ...++......+...|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            456789999999999995 5553 5789999943  2110            1234444455667799999999999999


Q ss_pred             EEEEEEcCCC
Q psy12422        260 YVCTATNSLG  269 (356)
Q Consensus       260 Y~C~a~n~~g  269 (356)
                      |.|.|.|..+
T Consensus        87 Y~C~~~~~~~   96 (216)
T 2xzc_L           87 YYCGTWDSSL   96 (216)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999999876

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.57  E-value=1.9e-14  Score=97.02  Aligned_cols=75  Identities=27%  Similarity=0.394  Sum_probs=65.1

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      ++.+...+....+.+|+.+.|.|.+.|+|.|.+.|+++|..+.....         ..|.|.+++.+|+|.|+|.|.|..
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~   73 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDR   73 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSS
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------CeEEECCCCHHhCEEEEEEEEcCC
Confidence            45666677778899999999999999999999999999998865431         379999999999999999999999


Q ss_pred             CceE
Q psy12422        269 GTAE  272 (356)
Q Consensus       269 g~~~  272 (356)
                      |...
T Consensus        74 g~~~   77 (91)
T 3bfo_A           74 DSQD   77 (91)
T ss_dssp             CEEE
T ss_pred             CCEE
Confidence            9654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.57  E-value=2.9e-14  Score=115.45  Aligned_cols=78  Identities=17%  Similarity=0.185  Sum_probs=59.5

Q ss_pred             ecccCCceeecCCCeEEEEEEEcCCC-----CCeEEEEECC--EE---cc---------CCCceeEEEeCCEEEEEEccC
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVVKGDP-----EPRVSWTKNG--QP---LN---------SSNILDLKYKNGVASLQIQEV  252 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~~g~p-----~p~i~W~~~g--~~---~~---------~~~~~~~~~~~~~~~L~i~~v  252 (356)
                      +...+..+.+.+|++++|.|.+.+.|     .+.+.|+|+.  ..   +.         ...++......+..+|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   83 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   83 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence            33445677899999999999999888     6889999832  11   10         123455555566779999999


Q ss_pred             CCCCCeEEEEEEEcCCC
Q psy12422        253 FPEDEGVYVCTATNSLG  269 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~~g  269 (356)
                      +.+|+|.|.|.|.|..+
T Consensus        84 ~~~D~G~Y~C~~~n~~~  100 (247)
T 1svz_A           84 EAEDLGIYYCFQGSHFP  100 (247)
T ss_dssp             CGGGCEEEEEEECSSSS
T ss_pred             CHHHCEEEEEEEccCCc
Confidence            99999999999999754

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=6.8e-15  Score=101.75  Aligned_cols=76  Identities=13%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             CCceEEEEEeccCCC-CeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPP-PTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |++++|.|.+.+.|. +.+.|||||.++..+ ++.+...+...+|.|.+++.+|+|.|+|.|    ++...++.|.|.++
T Consensus        23 G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~a~L~V~~~   98 (104)
T 2eny_A           23 GESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV----RGLTSKASLIVRER   98 (104)
T ss_dssp             SCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEE----TTEEEEECEEEECC
T ss_pred             CCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE----CCeeEEEEEEEeCC
Confidence            789999999988875 489999999998754 455666666779999999999999999998    44567888888876


Q ss_pred             cc
Q psy12422         79 EE   80 (356)
Q Consensus        79 ~~   80 (356)
                      +.
T Consensus        99 p~  100 (104)
T 2eny_A           99 SG  100 (104)
T ss_dssp             CS
T ss_pred             Cc
Confidence            54

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.57  E-value=1.4e-14  Score=113.34  Aligned_cols=129  Identities=16%  Similarity=0.168  Sum_probs=85.6

Q ss_pred             ceeecCCCeEEEEEEEc----CCCCCeEEEEECCEEccC------------CCceeEEEeCCEEEEEEccCCCCCCeEEE
Q psy12422        198 DKTIDDGQCLDLSAVVK----GDPEPRVSWTKNGQPLNS------------SNILDLKYKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~----g~p~p~i~W~~~g~~~~~------------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      .+.+.+|+++.|.|.+.    +.|.+.+.|++++..+..            ..+..+. ..+..+|.|.+++.+|+|.|.
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEE
Confidence            46788999999999995    346788999999887621            1112111 123358999999999999999


Q ss_pred             EEEEcCCCce-----EEEEEEecCC---CCccc-----------------------eeEEeCCe----------------
Q psy12422        262 CTATNSLGTA-----ETKCKLTPLN---SSNIL-----------------------DLKYKNGV----------------  294 (356)
Q Consensus       262 C~a~n~~g~~-----~~~~~l~p~~---~~~~~-----------------------~~~~~~~~----------------  294 (356)
                      |.|.|..|..     ...+.|.+..   .|.+.                       .+.|.++.                
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~  161 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPET  161 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTT
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCC
Confidence            9999987653     2344443111   11111                       34443211                


Q ss_pred             EEE---EEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy12422        295 ASL---QIQEVFPEDEGVYVCTATNSLGTAETKCKL  327 (356)
Q Consensus       295 ~~L---~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  327 (356)
                      ..+   .+..+..+|.|.|+|.|.|..|..++.+++
T Consensus       162 ~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          162 ELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             cEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            111   234455789999999999999998887664

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=3.5e-15  Score=105.31  Aligned_cols=77  Identities=23%  Similarity=0.437  Sum_probs=60.5

Q ss_pred             CCceEEEEEeccC---CCCeeEEeeCCEE-cc---cCCeeEE--ecC----CeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVGSTK---PPPTVKWYKGNRE-LS---KRDYSMS--YSD----GVVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~~g~---p~~~v~W~k~g~~-l~---~~~~~~~--~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      |++++|.|.+.|.   |.|.|.|||++.. +.   ..++.+.  ..+    ..+.|+|.+++.+|+|.|+|+|.|..|..
T Consensus        22 G~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~  101 (126)
T 2dav_A           22 GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD  101 (126)
T ss_dssp             TCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEE
T ss_pred             CCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCCcE
Confidence            7899999999764   8999999997421 11   1222221  111    24689999999999999999999999999


Q ss_pred             EEEEEEEEec
Q psy12422         68 ETNCVVIVES   77 (356)
Q Consensus        68 ~~~~~l~v~~   77 (356)
                      +..+.|.|..
T Consensus       102 ~~~~~L~V~~  111 (126)
T 2dav_A          102 SCSFDLEVHE  111 (126)
T ss_dssp             EECCEEEEEC
T ss_pred             EEEEEEEEEe
Confidence            9999999998

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.56  E-value=1e-13  Score=112.92  Aligned_cols=73  Identities=21%  Similarity=0.222  Sum_probs=56.5

Q ss_pred             CceeecCCCeEEEEEEEcCC--CCCeEEEEECC--EEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGD--PEPRVSWTKNG--QPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~--p~p~i~W~~~g--~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      ....+.+|++++|.|.+.+.  |.+.+.|+|+.  ....            ...++.....+...+|.|.+++.+|+|.|
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   89 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY   89 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence            35689999999999999887  78889999842  1111            12345555556677899999999999999


Q ss_pred             EEEEEcCCC
Q psy12422        261 VCTATNSLG  269 (356)
Q Consensus       261 ~C~a~n~~g  269 (356)
                      .|.|.|..+
T Consensus        90 ~C~~~~~~~   98 (256)
T 3ux9_B           90 YCQVRDNNE   98 (256)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEECCC
Confidence            999998654

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=1.7e-14  Score=102.46  Aligned_cols=79  Identities=19%  Similarity=0.233  Sum_probs=64.6

Q ss_pred             CceEEEEEeccCCCCeeEEeeCCEEcccCC-eeEEecC----CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         2 ~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      +...|.|.+.|.|.|.++|+|+|+.+.... .......    ....|.|.+++.+|+|.|+|.|.|..|.+.+.+.|.|.
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  100 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL  100 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEc
Confidence            346799999999999999999999997654 2232211    34589999999999999999999999999999998887


Q ss_pred             cccc
Q psy12422         77 SEEE   80 (356)
Q Consensus        77 ~~~~   80 (356)
                      ..+.
T Consensus       101 ~~P~  104 (118)
T 1wwc_A          101 KEPF  104 (118)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            6543

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.55  E-value=2.1e-14  Score=99.31  Aligned_cols=77  Identities=23%  Similarity=0.484  Sum_probs=69.2

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ..+|.+...+.+..+.+|+++.|.|.+.+.|.| +.|++++..+....++.+..++....|.|.+++.+|+|.|+|.+
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   82 (103)
T 2e7b_A            6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF   82 (103)
T ss_dssp             CCCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEEC
T ss_pred             CCCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEEE
Confidence            466778777888999999999999999999999 99999999998777887777777889999999999999999983

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.4e-14  Score=100.49  Aligned_cols=75  Identities=19%  Similarity=0.278  Sum_probs=62.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |++++|.|.+.+.|.+ +.|||+|..+... ++.+...+....|.|.+++.+|+|.|+|.|.|..+    .+.|.|.+++
T Consensus        25 G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~----~~~l~V~~~P   99 (104)
T 2e6p_A           25 SERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA----FFGVTVQDPS   99 (104)
T ss_dssp             SSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC----CEEEEEECCC
T ss_pred             CCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE----EEEEEEcCCC
Confidence            7899999999999999 9999999998754 45555566677999999999999999999988743    5677777654


Q ss_pred             c
Q psy12422         80 E   80 (356)
Q Consensus        80 ~   80 (356)
                      .
T Consensus       100 ~  100 (104)
T 2e6p_A          100 G  100 (104)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=7.7e-14  Score=96.72  Aligned_cols=90  Identities=20%  Similarity=0.210  Sum_probs=73.4

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC----------ceeEEEeCCEEEEEEccCCCCC
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN----------ILDLKYKNGVASLQIQEVFPED  256 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~----------~~~~~~~~~~~~L~i~~v~~~d  256 (356)
                      ..+|.|...+.+..+.+|+++.|.|.+.+  .|.+.|+|||..+..+.          ++.+..++..++|+|++++.+|
T Consensus         6 ~p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D   83 (112)
T 2e6q_A            6 SGTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQD   83 (112)
T ss_dssp             CSCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTT
T ss_pred             cCCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHH
Confidence            45577888889999999999999999987  77899999999998876          7777667778899999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEecCC
Q psy12422        257 EGVYVCTATNSLGTAETKCKLTPLN  281 (356)
Q Consensus       257 ~G~Y~C~a~n~~g~~~~~~~l~p~~  281 (356)
                      +|.|+|...+   ....++.|.+..
T Consensus        84 ~G~Y~~~~~~---~~~ssA~L~V~~  105 (112)
T 2e6q_A           84 SGALVGFSCP---GVQDSAALTIQE  105 (112)
T ss_dssp             CSEEEEEEET---TEEEEEEEEEEC
T ss_pred             CccEEEEEEC---CeeEEEEEEEeC
Confidence            9999774443   344556665443

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=2.4e-14  Score=98.21  Aligned_cols=80  Identities=21%  Similarity=0.481  Sum_probs=67.4

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      +....+.+|+.+.|.|.+.|.| |.+.|+|++..+....++.+.  .  ..|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   84 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT--G--EEVEVQDSVPADSGLYACVTSSPSGSDTTYF   84 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC--S--SEEEETTCCTTTCEEEEEEEEETTEEEEEEE
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE--C--CEEEEccCCHHHCEEEEEEEEeCCceEEEEE
Confidence            4556788999999999999987 799999999888766554432  3  3899999999999999999999999988888


Q ss_pred             EEecC
Q psy12422        276 KLTPL  280 (356)
Q Consensus       276 ~l~p~  280 (356)
                      .|.+.
T Consensus        85 ~l~V~   89 (99)
T 2cr3_A           85 SVNVS   89 (99)
T ss_dssp             EECBC
T ss_pred             EEEEe
Confidence            88744

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.55  E-value=3.3e-14  Score=97.69  Aligned_cols=74  Identities=26%  Similarity=0.360  Sum_probs=63.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+. .|.+.+.|||||..+..+ ++.+...+....|.|.+++.+|+|.|+|.|    |.....+.|.|.+++
T Consensus        23 G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           23 GGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGP   97 (100)
T ss_dssp             TEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEEECCSC
T ss_pred             CCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEEEecCC
Confidence            78899999998 799999999999998654 555666666778999999999999999999    677788889988754

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.55  E-value=4e-14  Score=113.01  Aligned_cols=139  Identities=17%  Similarity=0.274  Sum_probs=90.1

Q ss_pred             CCceeecCCCeEEEEEEEcCCC--CCeEEEEECC--EEcc-----------------CCCceeEEEe--CCEEEEEEccC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP--EPRVSWTKNG--QPLN-----------------SSNILDLKYK--NGVASLQIQEV  252 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~g--~~~~-----------------~~~~~~~~~~--~~~~~L~i~~v  252 (356)
                      +....+.+|++++|.|.+.+.|  .+.+.|+|++  ..+.                 ...++....+  .+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            3456789999999999999887  6789999843  2110                 0234444332  35679999999


Q ss_pred             CCCCCeEEEEEEEcCCCc---eEEEEEEec--CCC----------------------------CccceeEEeCC------
Q psy12422        253 FPEDEGVYVCTATNSLGT---AETKCKLTP--LNS----------------------------SNILDLKYKNG------  293 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~~g~---~~~~~~l~p--~~~----------------------------~~~~~~~~~~~------  293 (356)
                      +.+|+|.|.|.+.|..+.   ....+.+..  ...                            |....+.|.++      
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~  166 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV  166 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCc
Confidence            999999999999986321   111222210  000                            00003444321      


Q ss_pred             --------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCC
Q psy12422        294 --------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAA  335 (356)
Q Consensus       294 --------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  335 (356)
                                    .+.|.|..+..+| |.|+|.|.|..+.....+.+.+.++|..
T Consensus       167 ~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~  221 (227)
T 1mju_H          167 HTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIK  221 (227)
T ss_dssp             EECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC---
T ss_pred             EECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCC
Confidence                          2468898888888 9999999998877777777766666553

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.54  E-value=3e-14  Score=99.43  Aligned_cols=76  Identities=25%  Similarity=0.430  Sum_probs=59.3

Q ss_pred             CCceEEEEEeccCCC---CeeEEeeCCEE-ccc---CCeeEE--ec----CCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVGSTKPP---PTVKWYKGNRE-LSK---RDYSMS--YS----DGVVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~~g~p~---~~v~W~k~g~~-l~~---~~~~~~--~~----~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      |++++|.|.+.|.|.   |.|+|||++.. +..   .++.+.  ..    .+...|+|.+++.+|+|.|+|.|.|..|..
T Consensus        19 G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   98 (108)
T 3cx2_A           19 GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD   98 (108)
T ss_dssp             TCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecCCCce
Confidence            789999999999998   99999998722 211   122221  10    124689999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy12422         68 ETNCVVIVE   76 (356)
Q Consensus        68 ~~~~~l~v~   76 (356)
                      ++.+.|.|.
T Consensus        99 ~~~~~L~V~  107 (108)
T 3cx2_A           99 CSNFNLTVH  107 (108)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            999999885

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.54  E-value=3.4e-14  Score=116.26  Aligned_cols=76  Identities=21%  Similarity=0.343  Sum_probs=51.0

Q ss_pred             ecCCCeEEEEEEEcC-CC-CCeEEEEECCEEccCCCce--eEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        201 IDDGQCLDLSAVVKG-DP-EPRVSWTKNGQPLNSSNIL--DLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       201 v~~g~~~~l~C~~~g-~p-~p~i~W~~~g~~~~~~~~~--~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      +.+|+.++|.|.+.+ +| ++.+.|  ++..+......  .....++    .+.|.|.....+| |.|+|.+.|..+...
T Consensus       180 ~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~  256 (267)
T 3u1s_H          180 STSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  256 (267)
T ss_dssp             GEETTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEE
T ss_pred             cCCCCcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcc
Confidence            357999999999976 55 457999  55444321110  0011111    2478999998889 999999999988776


Q ss_pred             EEEEEec
Q psy12422        273 TKCKLTP  279 (356)
Q Consensus       273 ~~~~l~p  279 (356)
                      ....+.+
T Consensus       257 ~~~~~~~  263 (267)
T 3u1s_H          257 VDKKVEP  263 (267)
T ss_dssp             EEEECCC
T ss_pred             eEEEccc
Confidence            6666553

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.54  E-value=9.8e-14  Score=114.63  Aligned_cols=76  Identities=22%  Similarity=0.411  Sum_probs=57.0

Q ss_pred             ccCCceeecCCCeEEEEEEEcCCC--CCeEEEEECC--EEcc-----------------CCCceeEEEe--CCEEEEEEc
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGDP--EPRVSWTKNG--QPLN-----------------SSNILDLKYK--NGVASLQIQ  250 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~g--~~~~-----------------~~~~~~~~~~--~~~~~L~i~  250 (356)
                      ..+....+.+|++++|.|.+.+.|  .+.+.|+|++  ..+.                 ...++....+  .+..+|.|.
T Consensus        31 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  110 (282)
T 1qok_A           31 QQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS  110 (282)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence            344567899999999999999886  5789999953  1110                 1234444332  345789999


Q ss_pred             cCCCCCCeEEEEEEEcCCC
Q psy12422        251 EVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       251 ~v~~~d~G~Y~C~a~n~~g  269 (356)
                      +++.+|+|.|.|.+.|..|
T Consensus       111 ~v~~~DsG~Y~C~~~n~~g  129 (282)
T 1qok_A          111 SLTSEDTAVYYCNEGTPTG  129 (282)
T ss_dssp             SCCGGGCEEEEEEEECSSS
T ss_pred             cCChhhCEEEEEEeccCCC
Confidence            9999999999999999876

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=100.42  Aligned_cols=76  Identities=20%  Similarity=0.328  Sum_probs=63.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.+ |.+.+.|||+|..+... ++.+...+....|.|.+++.+|+|.|+|.|.|    ....+.|.|..++
T Consensus        23 G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~~~p   97 (103)
T 2edf_A           23 GEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA----SKSTASLHVEEKA   97 (103)
T ss_dssp             TSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS----CEEEEEEEECCCS
T ss_pred             CCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc----CCcEEEEEEeCCC
Confidence            789999999987 88899999999998654 45555566677899999999999999999988    3667888887765


Q ss_pred             cc
Q psy12422         80 ES   81 (356)
Q Consensus        80 ~~   81 (356)
                      ..
T Consensus        98 ~~   99 (103)
T 2edf_A           98 SG   99 (103)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=8.2e-14  Score=96.30  Aligned_cols=87  Identities=20%  Similarity=0.336  Sum_probs=73.4

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.|...+.+..+.+|+++.|.|.+ +.|.|.+.|++++..+....++.+...+....|.|.+++.+|+|.|+|.   
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2dku_A            6 SGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD---   81 (103)
T ss_dssp             CCCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE---
T ss_pred             CCCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE---
Confidence            456778888888999999999999995 8899999999999999888787777777788999999999999999998   


Q ss_pred             CCCceEEEEEEe
Q psy12422        267 SLGTAETKCKLT  278 (356)
Q Consensus       267 ~~g~~~~~~~l~  278 (356)
                       .|.....+.|.
T Consensus        82 -~g~~~~~~~l~   92 (103)
T 2dku_A           82 -IGQAQSRAQLL   92 (103)
T ss_dssp             -CSSCBCCEEEE
T ss_pred             -eCCceEEEEEE
Confidence             45544444444

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.53  E-value=1.6e-14  Score=117.90  Aligned_cols=80  Identities=10%  Similarity=0.187  Sum_probs=47.4

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEcc---C-C-------------CceeEE--EeCCEEEEE
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLN---S-S-------------NILDLK--YKNGVASLQ  248 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~---~-~-------------~~~~~~--~~~~~~~L~  248 (356)
                      |.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|.  +....   . .             .+....  ......+|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            4455556678899999999999999999999999982  21110   0 0             011110  112335799


Q ss_pred             EccCCCCCCeEEEEEEEcCCC
Q psy12422        249 IQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       249 i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |.+++.+|+|.|.|.+.|..+
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~  103 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNY  103 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTS
T ss_pred             ECCCCcccCEEEEEEEeeCCc
Confidence            999999999999999999765

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.53  E-value=5.2e-14  Score=95.70  Aligned_cols=71  Identities=17%  Similarity=0.363  Sum_probs=60.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+ +.|.+.++|||+|..+..+ ++.+...+...+|+|.+++.+|+|.|+|.|    |.....+.|.|.
T Consensus        23 G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~l~V~   94 (95)
T 2k1m_A           23 GSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI   94 (95)
T ss_dssp             TSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEEEEEE
T ss_pred             CCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCceEEEEEEEe
Confidence            7899999999 8899999999999988654 455666666779999999999999999999    566677777774

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.2e-14  Score=101.46  Aligned_cols=78  Identities=26%  Similarity=0.367  Sum_probs=60.6

Q ss_pred             CCceEEEEEeccC---CCCeeEEeeCCE-Eccc---CCeeEE--ecC----CeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVGSTK---PPPTVKWYKGNR-ELSK---RDYSMS--YSD----GVVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~~g~---p~~~v~W~k~g~-~l~~---~~~~~~--~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      |++++|.|.+.|.   |.|.|+|||++. ++..   .++.+.  ..+    ..++|+|.++..+|+|.|+|+|.|..|..
T Consensus        27 G~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~~  106 (118)
T 2edn_A           27 GKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCD  106 (118)
T ss_dssp             TSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSCEE
T ss_pred             CCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCCcE
Confidence            7899999999775   789999999752 2221   122221  111    24689999999999999999999999999


Q ss_pred             EEEEEEEEecc
Q psy12422         68 ETNCVVIVESE   78 (356)
Q Consensus        68 ~~~~~l~v~~~   78 (356)
                      +..+.|.|..+
T Consensus       107 s~~~~L~V~~~  117 (118)
T 2edn_A          107 SCGFNIDVEAP  117 (118)
T ss_dssp             EEEECCEEECC
T ss_pred             EEEEEEEEEcC
Confidence            99999999764

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.53  E-value=5e-14  Score=107.94  Aligned_cols=126  Identities=19%  Similarity=0.273  Sum_probs=83.7

Q ss_pred             CceeecCCCeEEEEEEEcC-CCCCeEEEEEC-CEEcc------------CC--CceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKG-DPEPRVSWTKN-GQPLN------------SS--NILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~-g~~~~------------~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      ..+.+.+|++++|.|.+.+ .+.+.|.|+++ +..+.            ..  .++.+  +....+|.|.+++.+|+|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y   84 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDY   84 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEE
Confidence            3567899999999999854 34678999994 32221            01  22222  23345799999999999999


Q ss_pred             EEEEEcCCCceEEEEEEec---CCCCcc------------------ceeEEeCCe--------EEEEEecCCCCCCeEEE
Q psy12422        261 VCTATNSLGTAETKCKLTP---LNSSNI------------------LDLKYKNGV--------ASLQIQEVFPEDEGVYV  311 (356)
Q Consensus       261 ~C~a~n~~g~~~~~~~l~p---~~~~~~------------------~~~~~~~~~--------~~L~i~~v~~~d~G~Y~  311 (356)
                      .|.+.+.. .....+.|.+   ...|.+                  ..+.|..++        .+|.+..  .+|+|.|+
T Consensus        85 ~C~v~~~~-~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~gp~p~i~W~~~~~~l~~~~~~~l~~~~--~~d~g~Y~  161 (180)
T 2dru_A           85 YMRMLHET-EDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW--TNLRAPFK  161 (180)
T ss_dssp             EEEEESSS-EEEEEEEEEEECCCCCCEEEEEGGGTEEEEECSSCTTCEEEEEETTEEEEEESSSEEEEEC--SCCSSCEE
T ss_pred             EEEEEcCC-eEEEEEEEEEECCCCCCEEEecCCCEEEEEEeCCCCCCEEEEEECCeECcCCCCCEEEEEE--hhcCccEE
Confidence            99998876 4444444442   111221                  155665533        2445522  78999999


Q ss_pred             EEEEcCCcceEEEEEE
Q psy12422        312 CTATNSLGTAETKCKL  327 (356)
Q Consensus       312 C~a~n~~g~~~~~~~l  327 (356)
                      |.|+|.+|..++...+
T Consensus       162 C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          162 CKAVNRVSQESEMEVV  177 (180)
T ss_dssp             EEEEETTEEEEEEECC
T ss_pred             EEEecCcCccccceeE
Confidence            9999999987775543

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.53  E-value=3.3e-14  Score=95.82  Aligned_cols=69  Identities=17%  Similarity=0.344  Sum_probs=58.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.+.|||+|..+....        ...|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.+
T Consensus        18 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           18 GSTLVLQCVAVGSPIPHYQWFKNELPLTHET--------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE   87 (91)
T ss_dssp             TSCEEEECEEECSSCCEEEEEETTEECTTCC--------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC-
T ss_pred             CCcEEEEEEeccCCCCEEEEEcCCeeCCcCC--------CCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEEeh
Confidence            7899999999999999999999999886442        12799999999999999999999998765 457777754

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.53  E-value=5.8e-14  Score=95.47  Aligned_cols=74  Identities=18%  Similarity=0.271  Sum_probs=62.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|  .|.+.|+|+|..+....+.. ..++  .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.++.
T Consensus        16 G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~-~~~~--~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~   89 (95)
T 4hwu_A           16 GESLELQCMLKD--AAVISWTKDGVHLGPNNRTV-LIGE--YLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTDAA   89 (95)
T ss_dssp             TSCEEEECCCCT--TCEEEEEETTEEECCCSSEE-EETT--EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC-
T ss_pred             CCEEEEEEEeCC--CCEEEEEECCEECCCCceEE-EeCC--EEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeCCc
Confidence            789999999987  47999999999997654322 2333  79999999999999999999999999999999998653

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.4e-13  Score=96.96  Aligned_cols=67  Identities=27%  Similarity=0.382  Sum_probs=60.7

Q ss_pred             eeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+.+|+.+.|.|.+. .|.+.+.|+|+|..+....++.+..++....|.|.+++.+|+|.|+|.|.|
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   89 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD   89 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec
Confidence            6788999999999996 888999999999999887777777667677999999999999999999999

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=4.8e-14  Score=97.37  Aligned_cols=71  Identities=20%  Similarity=0.390  Sum_probs=58.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+ +.|.+.|+|||||..+..+  ++.+...++...|.|.+++.+|+|.|+|.|    +.....+.|.|.
T Consensus        31 G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~  103 (104)
T 1pd6_A           31 GHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVK  103 (104)
T ss_dssp             TSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE----TTEEECCEEEEE
T ss_pred             CCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE----CCCcEEEEEEEe
Confidence            7899999999 7899999999999998754  455555666779999999999999999999    445556666664

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.52  E-value=6.3e-14  Score=111.49  Aligned_cols=131  Identities=15%  Similarity=0.277  Sum_probs=86.4

Q ss_pred             CceeecCCCeEEEEEEEcCCC--CCeEEEEECC--EEcc-------------------CCCceeEEEe--CCEEEEEEcc
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTKNG--QPLN-------------------SSNILDLKYK--NGVASLQIQE  251 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~g--~~~~-------------------~~~~~~~~~~--~~~~~L~i~~  251 (356)
                      ....+.+|++++|.|.+.+.|  .+.+.|+++.  ....                   ...++....+  .+..+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            345789999999999999876  6789999842  2110                   0133444333  3467899999


Q ss_pred             CCCCCCeEEEEEEEcCCC-----c--eEEEEEEec--CCC----------------------------CccceeEEeCC-
Q psy12422        252 VFPEDEGVYVCTATNSLG-----T--AETKCKLTP--LNS----------------------------SNILDLKYKNG-  293 (356)
Q Consensus       252 v~~~d~G~Y~C~a~n~~g-----~--~~~~~~l~p--~~~----------------------------~~~~~~~~~~~-  293 (356)
                      ++.+|+|.|.|.+.|..+     .  ....+.+..  ...                            |....+.|..+ 
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  167 (222)
T 1q9r_B           88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  167 (222)
T ss_dssp             CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCC
Confidence            999999999999998653     1  112222220  000                            00003344321 


Q ss_pred             -------------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy12422        294 -------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT  328 (356)
Q Consensus       294 -------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  328 (356)
                                         .+.|.|.++..+| |.|+|.|.|..|.......|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~  220 (222)
T 1q9r_B          168 LSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  220 (222)
T ss_dssp             BCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             eEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence                               1358999999999 999999999999876655543

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.52  E-value=5.7e-14  Score=110.76  Aligned_cols=127  Identities=17%  Similarity=0.314  Sum_probs=83.6

Q ss_pred             CCceeecCCCeEEEEEEEcCCC--CCeEEEEEC--CEEcc----------------CCCceeEEEe--CCEEEEEEccCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP--EPRVSWTKN--GQPLN----------------SSNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~--g~~~~----------------~~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      +....+.+|++++|.|.+.+.|  .+.+.|+|+  |....                ...++.+..+  .+..+|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            3456789999999999999876  478999984  22211                1234444332  345689999999


Q ss_pred             CCCCeEEEEEEEcCC--CceEEEEEEe--cCCC----------------------------CccceeEEeCC--------
Q psy12422        254 PEDEGVYVCTATNSL--GTAETKCKLT--PLNS----------------------------SNILDLKYKNG--------  293 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~--g~~~~~~~l~--p~~~----------------------------~~~~~~~~~~~--------  293 (356)
                      .+|+|.|.|.|.|..  +.. ..+.+.  +...                            |....+.|..+        
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~-~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~  165 (210)
T 3d9a_H           87 TEDTATYYCANWDGDYWGQG-TLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT  165 (210)
T ss_dssp             GGGCEEEEEEETTSSCBCCC-EEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE
T ss_pred             cccCEEEEEEEecCcccccc-eEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEE
Confidence            999999999999863  211 122221  0000                            10013444331        


Q ss_pred             ------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy12422        294 ------------VASLQIQEVFPEDEGVYVCTATNSLGTAETK  324 (356)
Q Consensus       294 ------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  324 (356)
                                  .+.|.|..+..+| |.|+|.|.|..|.....
T Consensus       166 ~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          166 FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             CCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence                        2458999998877 99999999999876554

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=5.5e-15  Score=101.85  Aligned_cols=73  Identities=22%  Similarity=0.317  Sum_probs=59.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-----CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-----DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.+.| +.++|||||..+...     ++.+...++...|.|.+++.+|+|.|+|.|.|    ....+.|.|
T Consensus        23 G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~~l~V   97 (101)
T 2edk_A           23 GDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG----GQCEAELIV   97 (101)
T ss_dssp             SCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS----CEECCBEEE
T ss_pred             CCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC----CcEEEEEEE
Confidence            78999999999998 999999999998653     44566666677899999999999999999987    344556766


Q ss_pred             ecc
Q psy12422         76 ESE   78 (356)
Q Consensus        76 ~~~   78 (356)
                      .++
T Consensus        98 ~~~  100 (101)
T 2edk_A           98 EEK  100 (101)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            643

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.52  E-value=1.7e-13  Score=112.04  Aligned_cols=81  Identities=15%  Similarity=0.204  Sum_probs=61.8

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCC------CCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDP------EPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQ  248 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p------~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~  248 (356)
                      .+.+...+..+.+.+|++++|.|.+.+.|      .+.+.|+++  |..+.            ...++..........|.
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            34555566778899999999999999888      678999984  32111            12345554455677999


Q ss_pred             EccCCCCCCeEEEEEEEcCCC
Q psy12422        249 IQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       249 i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |.+++.+|+|.|.|.+.|..+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~  105 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYP  105 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSS
T ss_pred             ECCCCHHHCEEEEEEEecCCc
Confidence            999999999999999998754

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.52  E-value=6.5e-14  Score=95.87  Aligned_cols=72  Identities=19%  Similarity=0.338  Sum_probs=59.3

Q ss_pred             CCceEEEEEec-cCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGS-TKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+. |.|.+.+.|||++.......  ....++  +|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        25 G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           25 GADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   97 (98)
T ss_dssp             TCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EEEETT--EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce--eecCCC--EEEEeCCChhhCEEEEEEecCCCCccccEEEEEEe
Confidence            78999999997 79999999999754443332  222333  79999999999999999999999999988888875

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.51  E-value=1.2e-14  Score=103.14  Aligned_cols=88  Identities=30%  Similarity=0.500  Sum_probs=67.0

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC-----ceeEEEeCCEEEEEE--ccCCCCCCeE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN-----ILDLKYKNGVASLQI--QEVFPEDEGV  259 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~-----~~~~~~~~~~~~L~i--~~v~~~d~G~  259 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.|+|.|.+.|++++..+....     ......++....+.|  .+++.+|+|.
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~   86 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEE
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEE
Confidence            567888888888899999999999999999999999999999887542     111111222222222  2668999999


Q ss_pred             EEEEEEcCCCceEEE
Q psy12422        260 YVCTATNSLGTAETK  274 (356)
Q Consensus       260 Y~C~a~n~~g~~~~~  274 (356)
                      |+|.|.|..|...+.
T Consensus        87 Y~C~a~N~~G~~~s~  101 (117)
T 2v9t_A           87 YVCVARNYLGEAVSH  101 (117)
T ss_dssp             EEEEEEETTEEEECC
T ss_pred             EEEEEEeCccceEee
Confidence            999999999987653

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.51  E-value=2.5e-13  Score=108.08  Aligned_cols=63  Identities=13%  Similarity=0.250  Sum_probs=46.7

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CE---Ecc----------cCCeeEEe--cCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NR---ELS----------KRDYSMSY--SDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~---~l~----------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|.+.+.+  .+.+.|||+  |+   .+.          ..++....  ..+.++|+|.+++.+|+|.|.|.+.
T Consensus        16 G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~   95 (229)
T 1hxm_A           16 GVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACD   95 (229)
T ss_dssp             TCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEe
Confidence            78999999997654  467999994  22   110          12343332  4567899999999999999999998


Q ss_pred             eC
Q psy12422         62 NK   63 (356)
Q Consensus        62 n~   63 (356)
                      +.
T Consensus        96 ~~   97 (229)
T 1hxm_A           96 TL   97 (229)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.51  E-value=1.5e-13  Score=95.85  Aligned_cols=94  Identities=21%  Similarity=0.283  Sum_probs=70.9

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCE-Ecc-------CCCceeEE-EeCCEEEEEEccCCCCCC
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ-PLN-------SSNILDLK-YKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~-~~~-------~~~~~~~~-~~~~~~~L~i~~v~~~d~  257 (356)
                      ..+|.+...+.++.+.+|+++.|.|.+.+.|.+.+.|++++. .+.       ...++... .......|.|.+++.+|+
T Consensus         4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   83 (108)
T 3m45_A            4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE   83 (108)
T ss_dssp             ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC
T ss_pred             ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC
Confidence            345667777788899999999999999999999999999764 222       12234332 223467999999999999


Q ss_pred             eEEEEEEEcCCCceEEEEEEecCC
Q psy12422        258 GVYVCTATNSLGTAETKCKLTPLN  281 (356)
Q Consensus       258 G~Y~C~a~n~~g~~~~~~~l~p~~  281 (356)
                      |.|+|.|.| .+.....+.|.+..
T Consensus        84 G~Y~C~~~n-~~~~~~~~~L~V~~  106 (108)
T 3m45_A           84 GQYTCSLFT-MPVKTSKAYLTVLG  106 (108)
T ss_dssp             EEEEEEECS-SSCEEEEEEEEEEC
T ss_pred             eEEEEEEEc-CCCcEEEEEEEEEc
Confidence            999999999 88888887776443

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.51  E-value=7.2e-14  Score=99.90  Aligned_cols=80  Identities=18%  Similarity=0.156  Sum_probs=61.7

Q ss_pred             CCceEEEEEecc--CCCCeeEEeeCCEEccc-----C-CeeEEec---CCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGST--KPPPTVKWYKGNRELSK-----R-DYSMSYS---DGVVSMEIIDCKPEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~g--~p~~~v~W~k~g~~l~~-----~-~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |+++.|.|.+.|  .|.+.+.|+|+|..+..     . .......   .....|+|.+++.+|+|.|+|.|.|..|....
T Consensus        23 G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~  102 (122)
T 3s35_X           23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN  102 (122)
T ss_dssp             TCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCCceEE
Confidence            799999999988  44568999999875431     1 1111111   13458999999999999999999999999999


Q ss_pred             EEEEEEecccc
Q psy12422         70 NCVVIVESEEE   80 (356)
Q Consensus        70 ~~~l~v~~~~~   80 (356)
                      .+.|.|.+.+.
T Consensus       103 ~~~l~V~~~p~  113 (122)
T 3s35_X          103 STFVRVHEKPF  113 (122)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEeccCe
Confidence            99999987643

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.51  E-value=1.7e-13  Score=95.59  Aligned_cols=78  Identities=24%  Similarity=0.422  Sum_probs=68.7

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.|...+....+.+|+++.|.|.+.+.  |.+.|++++..+....++.+..++....|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   83 (108)
T 2dm7_A            6 SGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ   83 (108)
T ss_dssp             CCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT
T ss_pred             CCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC
Confidence            567888777888899999999999999765  689999999998877777777777788899999999999999999955

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.50  E-value=1.3e-13  Score=109.58  Aligned_cols=130  Identities=15%  Similarity=0.312  Sum_probs=86.3

Q ss_pred             CCceeecCCCeEEEEEEEcCCC--CCeEEEEECC--EE---c-c--C-------------CCceeEEEe--CCEEEEEEc
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP--EPRVSWTKNG--QP---L-N--S-------------SNILDLKYK--NGVASLQIQ  250 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~g--~~---~-~--~-------------~~~~~~~~~--~~~~~L~i~  250 (356)
                      +..+.+.+|++++|.|.+.+.|  .+.+.|+|++  ..   + .  .             ..++....+  .+...|.|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            3456889999999999999877  6889999843  11   1 0  0             134444332  345689999


Q ss_pred             cCCCCCCeEEEEEEEcCCCce-----EEEEEEec--CCCCc----------------------------cceeEEeCC--
Q psy12422        251 EVFPEDEGVYVCTATNSLGTA-----ETKCKLTP--LNSSN----------------------------ILDLKYKNG--  293 (356)
Q Consensus       251 ~v~~~d~G~Y~C~a~n~~g~~-----~~~~~l~p--~~~~~----------------------------~~~~~~~~~--  293 (356)
                      +++.+|+|.|.|.+.|..+..     ...+.+..  ...|.                            ...+.|.++  
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  166 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGAL  166 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCc
Confidence            999999999999999975321     12222220  00000                            003444331  


Q ss_pred             ------------------eEEEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy12422        294 ------------------VASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  326 (356)
Q Consensus       294 ------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  326 (356)
                                        .+.|.|..+..+| |.|+|.|.|..|..++.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          167 SSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             ccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence                              2458888888867 9999999999998776554

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.2e-13  Score=95.76  Aligned_cols=75  Identities=13%  Similarity=0.157  Sum_probs=59.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-----------eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-----------YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-----------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |+++.|.|.+.+  .|.++|||||++|..+.           +.+...+...+|+|.+++.+|+|.|+|...+   ...+
T Consensus        23 G~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~~---~~~s   97 (112)
T 2e6q_A           23 GEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCP---GVQD   97 (112)
T ss_dssp             TCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEET---TEEE
T ss_pred             CCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEEC---CeeE
Confidence            789999999987  67899999999997653           3344445567899999999999999774433   3456


Q ss_pred             EEEEEEecccc
Q psy12422         70 NCVVIVESEEE   80 (356)
Q Consensus        70 ~~~l~v~~~~~   80 (356)
                      ++.|.|.+.+.
T Consensus        98 sA~L~V~~~p~  108 (112)
T 2e6q_A           98 SAALTIQESSG  108 (112)
T ss_dssp             EEEEEEECSSC
T ss_pred             EEEEEEeCCCc
Confidence            88899987654

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.50  E-value=1.6e-13  Score=113.24  Aligned_cols=72  Identities=18%  Similarity=0.318  Sum_probs=52.7

Q ss_pred             CCceeecCCCeEEEEEEEcCC--CCCeEEEEECC--EEcc-----------------CCCceeEEE--eCCEEEEEEccC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGD--PEPRVSWTKNG--QPLN-----------------SSNILDLKY--KNGVASLQIQEV  252 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~--p~p~i~W~~~g--~~~~-----------------~~~~~~~~~--~~~~~~L~i~~v  252 (356)
                      +....+.+|++++|.|.+.+.  +.+.+.|++..  ....                 ...++....  .....+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            456789999999999999875  56789999732  1110                 012333332  234578999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy12422        253 FPEDEGVYVCTATNS  267 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~  267 (356)
                      +.+|+|.|.|.+.|.
T Consensus        87 ~~~DsG~Y~C~~~~~  101 (280)
T 3fku_X           87 RSEDTAVYYCARSPS  101 (280)
T ss_dssp             CSTTCEECCEEECSS
T ss_pred             ChhhCEEEEEEEecC
Confidence            999999999999987

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.49  E-value=2.9e-13  Score=109.42  Aligned_cols=77  Identities=13%  Similarity=0.258  Sum_probs=58.6

Q ss_pred             ecccCCceeecCCCeEEEEEEEcCCCCCeEEEEE----------------CCEEccCC---CceeEEE-eCCEEEEEEcc
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK----------------NGQPLNSS---NILDLKY-KNGVASLQIQE  251 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~----------------~g~~~~~~---~~~~~~~-~~~~~~L~i~~  251 (356)
                      +...+..+.+.+|+++.|.|.+.+.|.+.+.|+|                ++......   .++.... ..+..+|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   83 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS   83 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence            3444566789999999999999999999999998                33322222   3343332 34567999999


Q ss_pred             CCCCCCeEEEEEEEcCC
Q psy12422        252 VFPEDEGVYVCTATNSL  268 (356)
Q Consensus       252 v~~~d~G~Y~C~a~n~~  268 (356)
                      ++.+|+|.|.|.|.|..
T Consensus        84 v~~~D~G~Y~C~~~~~~  100 (246)
T 4dzb_B           84 AHPEDSSFYICSARTSG  100 (246)
T ss_dssp             CCGGGCEEEEEEECCSS
T ss_pred             CCHHHCEEEEEEEecCC
Confidence            99999999999998764

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.7e-14  Score=97.36  Aligned_cols=77  Identities=27%  Similarity=0.527  Sum_probs=65.2

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|+|+|..+....         ...|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n   78 (96)
T 2ens_A            8 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLILPEIGPQDQGTYSCVATH   78 (96)
T ss_dssp             CCSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC---------CSEEEEESCCTTTCEEEECEECC
T ss_pred             CCCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC---------CCEEEECCCCcccCEEEEEEEEe
Confidence            455677777778889999999999999999999999999998876432         23899999999999999999999


Q ss_pred             CCCceE
Q psy12422        267 SLGTAE  272 (356)
Q Consensus       267 ~~g~~~  272 (356)
                      ..+...
T Consensus        79 ~~~~~~   84 (96)
T 2ens_A           79 SSHGPQ   84 (96)
T ss_dssp             SSCCCE
T ss_pred             CCCCcE
Confidence            766543

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.8e-13  Score=96.40  Aligned_cols=74  Identities=23%  Similarity=0.377  Sum_probs=61.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+. .|.+.+.|||+|+.+... ++.+...+....|.|.+++.+|+|.|+|.|.|    ....+.|.|.+++
T Consensus        28 G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~~~p  102 (113)
T 2cpc_A           28 LERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTVTEPP  102 (113)
T ss_dssp             TCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS----CEEEEEEEEECCC
T ss_pred             CCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec----CcEEEEEEEecCC
Confidence            78999999995 889999999999998754 44455555567999999999999999999988    4567788887654

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.49  E-value=3.3e-13  Score=110.57  Aligned_cols=82  Identities=17%  Similarity=0.233  Sum_probs=61.9

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCC-----CCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEE
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDP-----EPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQ  248 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-----~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~  248 (356)
                      ..+.+...+..+.+.+|++++|.|.+.+.|     .+.+.|+++  +..+.            ...++.....++..+|.
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~   93 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK   93 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence            345555666778899999999999998887     478999984  22110            12345544456677999


Q ss_pred             EccCCCCCCeEEEEEEEcCCC
Q psy12422        249 IQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       249 i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |.+++.+|+|.|.|.+.|..+
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~  114 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVP  114 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSS
T ss_pred             ECCCChhHCEEEEEEEecCCC
Confidence            999999999999999998744

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.49  E-value=2.9e-14  Score=99.13  Aligned_cols=74  Identities=20%  Similarity=0.251  Sum_probs=60.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.+.|.+ ++|||+|..+... ++.+...+....|.|.+++.+|+|.|+|.|.|.  .....+.|.|..
T Consensus        23 G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~~~l~V~~   97 (106)
T 2dlt_A           23 AEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY--ALSLSAKLNFLE   97 (106)
T ss_dssp             SCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS--CCCCCBCEEEEC
T ss_pred             CCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC--CceEEEEEEEEE
Confidence            7899999999998888 9999999998654 455556666779999999999999999999998  444555666653

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.48  E-value=9.6e-15  Score=104.43  Aligned_cols=78  Identities=18%  Similarity=0.288  Sum_probs=65.3

Q ss_pred             CCceEEEEEeccCCCCe-eEEeeCCEEccc---CCeeEE--ecCC--eEEEEEeeCCCCCC-eEEEEEEEeCCceeEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPT-VKWYKGNRELSK---RDYSMS--YSDG--VVSMEIIDCKPEDS-GEYKCVATNKHGTDETNC   71 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~-v~W~k~g~~l~~---~~~~~~--~~~~--~~~L~i~~~~~~D~-G~Y~C~a~n~~g~~~~~~   71 (356)
                      |+++.|.|.+.|.|.|. |+|+|+|..+..   .++.+.  ..++  ...|.|.+++.+|+ |.|+|.|.|..|.....+
T Consensus        28 G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~  107 (122)
T 2cry_A           28 GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEII  107 (122)
T ss_dssp             TSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEE
T ss_pred             CCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEEEE
Confidence            78999999999999997 999999998864   344432  2233  55899999999999 999999999999999988


Q ss_pred             EEEEecc
Q psy12422         72 VVIVESE   78 (356)
Q Consensus        72 ~l~v~~~   78 (356)
                      .|.|.++
T Consensus       108 ~l~V~~~  114 (122)
T 2cry_A          108 RLKEQGS  114 (122)
T ss_dssp             CCCCSCS
T ss_pred             EEEECCC
Confidence            8888764

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.48  E-value=1.5e-12  Score=110.03  Aligned_cols=39  Identities=13%  Similarity=0.072  Sum_probs=33.4

Q ss_pred             CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422         39 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus        39 ~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      +..+|+|.+++.+|+|.|.|.+.+..+.....+.|.|..
T Consensus       252 g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~  290 (401)
T 3f8u_B          252 GNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK  290 (401)
T ss_dssp             EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             CcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc
Confidence            567999999999999999999999888777777777753

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.48  E-value=2.9e-13  Score=92.55  Aligned_cols=79  Identities=25%  Similarity=0.411  Sum_probs=63.8

Q ss_pred             cCCceeecCCCeEEEEEEEc-CCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      .+....+.+|+++.|.|.+. +.|.+.+.|++++........   ....+  .|.|.+++.+|+|.|.|.|.|..|....
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   90 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA---MDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQG   90 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE---EEETT--EEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCcee---ecCCC--EEEEeCCChhhCEEEEEEecCCCCcccc
Confidence            34677899999999999998 799999999997544333221   12233  7999999999999999999999999888


Q ss_pred             EEEEe
Q psy12422        274 KCKLT  278 (356)
Q Consensus       274 ~~~l~  278 (356)
                      .+.|.
T Consensus        91 ~~~l~   95 (98)
T 1gl4_B           91 TATLH   95 (98)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87775

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.48  E-value=2.1e-13  Score=97.60  Aligned_cols=79  Identities=19%  Similarity=0.311  Sum_probs=62.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEE-c--------ccCCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRE-L--------SKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~-l--------~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |++++|.|.+.+.|.+.+.|++++.. +        ...++... ...+..+|+|.+++.+|+|.|+|.+.|. |.....
T Consensus        16 G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-g~~~~~   94 (124)
T 3rbg_A           16 GQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKE   94 (124)
T ss_dssp             TSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS-SEEEEE
T ss_pred             CCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC-CCCcEE
Confidence            79999999999999999999986543 2        12233332 3445679999999999999999999999 999999


Q ss_pred             EEEEEecccc
Q psy12422         71 CVVIVESEEE   80 (356)
Q Consensus        71 ~~l~v~~~~~   80 (356)
                      +.|.|..++.
T Consensus        95 ~~l~V~~~P~  104 (124)
T 3rbg_A           95 VKVIVLATMK  104 (124)
T ss_dssp             EEEEEECC--
T ss_pred             EEEEEEeCCC
Confidence            9999987643

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.48  E-value=2.7e-13  Score=95.39  Aligned_cols=74  Identities=23%  Similarity=0.392  Sum_probs=62.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.+.  |.++|||+|..+..+ ++.+...++...|.|.+++.+|+|.|+|.|    +.....+.|.|...+
T Consensus        34 G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~~p  107 (113)
T 2edh_A           34 GATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMP  107 (113)
T ss_dssp             TSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEECCCC
T ss_pred             CCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEEeCCC
Confidence            7899999999775  689999999998754 555666666778999999999999999999    777888899988764


Q ss_pred             c
Q psy12422         80 E   80 (356)
Q Consensus        80 ~   80 (356)
                      .
T Consensus       108 ~  108 (113)
T 2edh_A          108 S  108 (113)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.8e-13  Score=94.59  Aligned_cols=76  Identities=21%  Similarity=0.309  Sum_probs=63.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |++++|.|.+ +.|.+.|+|||++..+... ++.+...++...|+|.+++.+|+|.|+|.    .|.....+.|.|.+.+
T Consensus        23 G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~V~~~p   97 (103)
T 2dku_A           23 KGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQSRAQLLVQGRR   97 (103)
T ss_dssp             TSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----CSSCBCCEEEEEECSC
T ss_pred             CCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----eCCceEEEEEEEeCcc
Confidence            7899999995 8999999999999998754 45555566777999999999999999998    5777778889888765


Q ss_pred             cc
Q psy12422         80 ES   81 (356)
Q Consensus        80 ~~   81 (356)
                      ..
T Consensus        98 ~~   99 (103)
T 2dku_A           98 SG   99 (103)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.48  E-value=2.3e-13  Score=92.52  Aligned_cols=80  Identities=28%  Similarity=0.460  Sum_probs=67.4

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      +....+.+|+++.|.|.+.+  .|.+.|+++|..+....++..  ..+  .|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~--~~~--~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   81 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVL--IGE--YLQIKGATPRDSGLYACTAARTVDSETWIF   81 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEE--ETT--EEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEE--eCC--EEEECcCCcccCEEEEEEEccCCCcEEEEE
Confidence            45678999999999999986  579999999999877665443  233  899999999999999999999999888888


Q ss_pred             EEecCC
Q psy12422        276 KLTPLN  281 (356)
Q Consensus       276 ~l~p~~  281 (356)
                      .+.+..
T Consensus        82 ~l~V~~   87 (95)
T 4hwu_A           82 MVNVTD   87 (95)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            887543

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.48  E-value=2.7e-13  Score=95.17  Aligned_cols=91  Identities=15%  Similarity=0.345  Sum_probs=69.8

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCC--CCCeEEEEECCEEccCCCceeE-EEeC-------CEEEEEEccCCCCC
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGD--PEPRVSWTKNGQPLNSSNILDL-KYKN-------GVASLQIQEVFPED  256 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~--p~p~i~W~~~g~~~~~~~~~~~-~~~~-------~~~~L~i~~v~~~d  256 (356)
                      ..+|.+...+....+.+|+++.|.|.+.+.  |.+.+.|++++..+........ ....       ....|.|.+++.+|
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS   87 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence            567888888888899999999999999855  4678999999998875432111 1100       13689999999999


Q ss_pred             CeEEEEEEEcCCCce-EEEEEE
Q psy12422        257 EGVYVCTATNSLGTA-ETKCKL  277 (356)
Q Consensus       257 ~G~Y~C~a~n~~g~~-~~~~~l  277 (356)
                      +|.|+|.|.|..|.. ...+.|
T Consensus        88 ~G~Y~C~a~n~~g~~~s~~~~l  109 (112)
T 3so5_A           88 EGXYQCVISNHFGSSYSVXAXL  109 (112)
T ss_dssp             CEEEEEEEEETTEEEECCCEEE
T ss_pred             CCeEEEEEEeCCCcEEEeEEEE
Confidence            999999999999973 344444

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.47  E-value=9.7e-14  Score=101.37  Aligned_cols=86  Identities=21%  Similarity=0.381  Sum_probs=68.3

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC----------CceeEEE---eCCEEEEEEccCC
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS----------NILDLKY---KNGVASLQIQEVF  253 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~----------~~~~~~~---~~~~~~L~i~~v~  253 (356)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+...          .+.....   ......|.|.+++
T Consensus        19 ~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   98 (137)
T 3qr2_A           19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLV   98 (137)
T ss_dssp             --CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCC
T ss_pred             CCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCC
Confidence            67899998899999999999999999999999999999987655422          1222211   1134689999999


Q ss_pred             CCCCeEEEEEEEcCCCceE
Q psy12422        254 PEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~g~~~  272 (356)
                      .+|+|.|+|.|.|..|...
T Consensus        99 ~~D~G~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A           99 EEDTGTYECRASNDPDRNH  117 (137)
T ss_dssp             GGGCEEEEEEEECCTTSSS
T ss_pred             cccCEEEEEEEEecCCccc
Confidence            9999999999999999763

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.47  E-value=9.7e-14  Score=95.94  Aligned_cols=75  Identities=27%  Similarity=0.456  Sum_probs=62.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.+.|.+ +.|||++..+... ++.+...+...+|.|.+++.+|+|.|+|.    .|.....+.|.|.+++
T Consensus        23 G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~V~~~p   97 (103)
T 2e7b_A           23 GGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTSATLTVTALP   97 (103)
T ss_dssp             SSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----CSSCBCCBCEEEECCC
T ss_pred             CCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----ECCcEEEEEEEEEecc
Confidence            7899999999999999 9999999988644 55566666677899999999999999998    4666677788887654


Q ss_pred             c
Q psy12422         80 E   80 (356)
Q Consensus        80 ~   80 (356)
                      .
T Consensus        98 ~   98 (103)
T 2e7b_A           98 S   98 (103)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=2e-13  Score=94.20  Aligned_cols=71  Identities=24%  Similarity=0.405  Sum_probs=62.8

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      .+..+.+|+++.|.|.+. .|.+.+.|+|+|..+....++.+...+....|.|.+++.+|+|.|+|.|.|..
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~   89 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQ   89 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETTEE
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCCCc
Confidence            456899999999999998 88999999999999988777777777777899999999999999999996543

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.47  E-value=7.4e-14  Score=98.99  Aligned_cols=78  Identities=24%  Similarity=0.396  Sum_probs=57.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-----eeEEecCCe-EEEEE--eeCCCCCCeEEEEEEEeCCceeEEE-E
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-----YSMSYSDGV-VSMEI--IDCKPEDSGEYKCVATNKHGTDETN-C   71 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-----~~~~~~~~~-~~L~i--~~~~~~D~G~Y~C~a~n~~g~~~~~-~   71 (356)
                      |+++.|.|.+.|.|.|.|+|||+|..+....     ......++. ..|.|  .+++.+|+|.|+|.|.|..|...+. +
T Consensus        24 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s~~~  103 (117)
T 2v9t_A           24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDA  103 (117)
T ss_dssp             TCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEECCCE
T ss_pred             CCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEeeeE
Confidence            7899999999999999999999999987431     223333442 22222  2668999999999999999988654 6


Q ss_pred             EEEEecc
Q psy12422         72 VVIVESE   78 (356)
Q Consensus        72 ~l~v~~~   78 (356)
                      .|.+...
T Consensus       104 ~l~~~~~  110 (117)
T 2v9t_A          104 SLEVAAA  110 (117)
T ss_dssp             EEEEC--
T ss_pred             EEEhhhh
Confidence            6666543

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.47  E-value=2e-13  Score=97.53  Aligned_cols=87  Identities=16%  Similarity=0.252  Sum_probs=64.5

Q ss_pred             CceeecCCCeEEEEEEEcCC--CCCeEEEEECCEEccC-----CCceeEEEe---CCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        197 TDKTIDDGQCLDLSAVVKGD--PEPRVSWTKNGQPLNS-----SNILDLKYK---NGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~--p~p~i~W~~~g~~~~~-----~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+.+.+|+++.|.|.+.|.  |.+.+.|++++..+..     .........   ...+.|.|.+++.+|+|.|+|.|.|
T Consensus        16 ~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   95 (122)
T 3s35_X           16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS   95 (122)
T ss_dssp             SCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence            44578999999999999984  4568999998874421     111111111   1245899999999999999999999


Q ss_pred             CCCceEEEEEEecCCCC
Q psy12422        267 SLGTAETKCKLTPLNSS  283 (356)
Q Consensus       267 ~~g~~~~~~~l~p~~~~  283 (356)
                      ..|.....+.|.+...|
T Consensus        96 ~~g~~~~~~~l~V~~~p  112 (122)
T 3s35_X           96 GLMTKKNSTFVRVHEKP  112 (122)
T ss_dssp             SSCEEEEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEEeccC
Confidence            99999888888755444

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.46  E-value=6.6e-15  Score=118.13  Aligned_cols=80  Identities=13%  Similarity=0.270  Sum_probs=46.6

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECC--EEc------------cCCCceeEEEeCCEEEEEEccCCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNG--QPL------------NSSNILDLKYKNGVASLQIQEVFPE  255 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~  255 (356)
                      +.+...+..+.+.+|+++.|.|.+.+.|.+.+.|+|++  ..+            ....++.....++..+|.|.+++.+
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  103 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSE  103 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CC
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHH
Confidence            44455566778999999999999998888889999843  211            0012222222334458999999999


Q ss_pred             CCeEEEEEEEcCCC
Q psy12422        256 DEGVYVCTATNSLG  269 (356)
Q Consensus       256 d~G~Y~C~a~n~~g  269 (356)
                      |+|.|.|.|.|..+
T Consensus       104 D~G~Y~C~~~~~~~  117 (233)
T 3bqu_C          104 DVADYYCLQSDNLP  117 (233)
T ss_dssp             CCSEEEEEECSSSS
T ss_pred             HCEEEEEEEecCCc
Confidence            99999999998764

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.9e-13  Score=94.24  Aligned_cols=73  Identities=16%  Similarity=0.275  Sum_probs=60.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+. .|.+.+.|||+|..+... ++.+...+....|+|.+++.+|+|.|+|.|.    .....+.|.|.++
T Consensus        26 G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~----~~~~~~~l~V~~p   99 (102)
T 2eo1_A           26 GASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAG----GQQLSFRLQVAGQ   99 (102)
T ss_dssp             TCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEET----TEECCEEEEEESC
T ss_pred             CCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcC----CCcEEEEEEEeCC
Confidence            78999999998 889999999999999754 4555555566799999999999999999993    4556678888765

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.46  E-value=4.4e-13  Score=106.79  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=55.0

Q ss_pred             CceeecCCCeEEEEEEEcCCC--CCeEEEEECC--EEcc-----------------CCCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTKNG--QPLN-----------------SSNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~g--~~~~-----------------~~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+.+|++++|.|.+.+.|  .+.+.|+|..  ..+.                 ...++....+  .+..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            346789999999999999887  6789999842  2110                 1234444433  346799999999


Q ss_pred             CCCCeEEEEEEEcCCC
Q psy12422        254 PEDEGVYVCTATNSLG  269 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~g  269 (356)
                      .+|+|.|.|.+.|..|
T Consensus        88 ~~D~G~Y~C~~~~~~~  103 (225)
T 1op3_H           88 VEDTAIYYCARKGSDR  103 (225)
T ss_dssp             GGGCEEEEEEEECCSS
T ss_pred             hhhCEEEEEEEecCCC
Confidence            9999999999999864

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.46  E-value=2.3e-13  Score=111.70  Aligned_cols=72  Identities=18%  Similarity=0.304  Sum_probs=50.3

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEc------------cCC---C-ceeEEE-eCCEEEEEEccCCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPL------------NSS---N-ILDLKY-KNGVASLQIQEVFPE  255 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~------------~~~---~-~~~~~~-~~~~~~L~i~~v~~~  255 (356)
                      .+..+.+.+|++++|.|.+.+ +.+.+.|+|.  +...            ...   . ++.... ..+..+|.|.+++.+
T Consensus        33 ~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~  111 (270)
T 3qib_D           33 TPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAG  111 (270)
T ss_dssp             ECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGG
T ss_pred             CCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHh
Confidence            344567889999999999865 7788999982  2110            000   0 222221 234578999999999


Q ss_pred             CCeEEEEEEEcC
Q psy12422        256 DEGVYVCTATNS  267 (356)
Q Consensus       256 d~G~Y~C~a~n~  267 (356)
                      |+|.|.|.+.+.
T Consensus       112 D~G~Y~C~~~~~  123 (270)
T 3qib_D          112 DSALYLCASSLN  123 (270)
T ss_dssp             GCEEEEEEEESC
T ss_pred             HCeEEEEEEecC
Confidence            999999999964

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.45  E-value=8.1e-14  Score=109.55  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=55.4

Q ss_pred             cCCcee-ecCCCeEEEEEEEcCCC---C-CeEEEEECCEEccCCCc-eeEEEeCC----EEEEEEccCCCCCCeEEEEEE
Q psy12422        195 KLTDKT-IDDGQCLDLSAVVKGDP---E-PRVSWTKNGQPLNSSNI-LDLKYKNG----VASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       195 ~~~~~~-v~~g~~~~l~C~~~g~p---~-p~i~W~~~g~~~~~~~~-~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      .+.... +.+|++++|.|.+.|.|   . +.|.|+|++..+..... ......++    ...|.|.+++.+|+|.|+|.|
T Consensus         8 ~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   87 (207)
T 2vol_A            8 PPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRV   87 (207)
T ss_dssp             CCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred             CcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEE
Confidence            344334 88999999999998874   2 48999999977653210 00011111    247999999999999999999


Q ss_pred             EcCCCce
Q psy12422        265 TNSLGTA  271 (356)
Q Consensus       265 ~n~~g~~  271 (356)
                      .|..+..
T Consensus        88 ~~~~~~~   94 (207)
T 2vol_A           88 NSAAFPA   94 (207)
T ss_dssp             ECTTCSS
T ss_pred             EccCCCC
Confidence            9998853

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=4.5e-14  Score=99.71  Aligned_cols=76  Identities=14%  Similarity=0.160  Sum_probs=62.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-eeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.|.++|||||..+..+. +.+. ..++...|.|.+++.+|+|.|+|.+    |.....+.|.|...
T Consensus        28 G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~~~~~~~L~V~~~  103 (115)
T 2cr6_A           28 GSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK  103 (115)
T ss_dssp             TSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----TTEECCEEEEEECC
T ss_pred             CCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----CCeeEEEEEEEECC
Confidence            7899999999999999999999999987553 3333 2355568999999999999999994    67777888998866


Q ss_pred             cc
Q psy12422         79 EE   80 (356)
Q Consensus        79 ~~   80 (356)
                      +.
T Consensus       104 p~  105 (115)
T 2cr6_A          104 PS  105 (115)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.45  E-value=4.9e-14  Score=111.76  Aligned_cols=85  Identities=15%  Similarity=0.079  Sum_probs=59.0

Q ss_pred             CCCCeecccCCcee--ecCCCeEEEEEEEcCC---CC-CeEEEEECCEEccCCCceeE-EEeC----CEEEEEEccCCCC
Q psy12422        187 MTPPQFANKLTDKT--IDDGQCLDLSAVVKGD---PE-PRVSWTKNGQPLNSSNILDL-KYKN----GVASLQIQEVFPE  255 (356)
Q Consensus       187 ~~~p~~~~~~~~~~--v~~g~~~~l~C~~~g~---p~-p~i~W~~~g~~~~~~~~~~~-~~~~----~~~~L~i~~v~~~  255 (356)
                      ..+|.+...+....  +.+|++++|.|.+.|.   |+ +.|.|+|++..+........ ...+    ..+.|.|.+++.+
T Consensus         7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   86 (218)
T 2rgs_A            7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM   86 (218)
T ss_dssp             --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred             CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence            34455544443333  7899999999999887   44 78999999987754321111 1111    1357999999999


Q ss_pred             CCeEEEEEEEcCCCce
Q psy12422        256 DEGVYVCTATNSLGTA  271 (356)
Q Consensus       256 d~G~Y~C~a~n~~g~~  271 (356)
                      |+|.|+|.|.|..+..
T Consensus        87 D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           87 SGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             TTCCEEEEEEETTCSS
T ss_pred             CCCeEEEEEECCcCCC
Confidence            9999999999987753

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.45  E-value=1.9e-12  Score=107.30  Aligned_cols=73  Identities=19%  Similarity=0.305  Sum_probs=54.1

Q ss_pred             CCceeecCCCeEEEEEEEcCCC--CCeEEEEECC--EEcc-----------------CCCceeEEE--eCCEEEEEEccC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP--EPRVSWTKNG--QPLN-----------------SSNILDLKY--KNGVASLQIQEV  252 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~g--~~~~-----------------~~~~~~~~~--~~~~~~L~i~~v  252 (356)
                      +....+.+|++++|.|.+.+.|  .+.+.|+++.  ..+.                 ...++....  ..+..+|.|.++
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  108 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL  108 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred             CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence            3467899999999999998887  5789999942  1110                 012333332  234578999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy12422        253 FPEDEGVYVCTATNSL  268 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~~  268 (356)
                      +.+|+|.|.|.+.|..
T Consensus       109 ~~~DsG~Y~C~~~~~~  124 (291)
T 2gki_A          109 TSEDSAVYYCARGAYK  124 (291)
T ss_dssp             CGGGCEEEEEEEECGG
T ss_pred             CHHHCEEEEEEEeccc
Confidence            9999999999999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=2.2e-13  Score=116.47  Aligned_cols=94  Identities=16%  Similarity=0.178  Sum_probs=62.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc-C--CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK-R--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~-~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.| |+|.|+|++++..+.. .  ...+...++  +|+|.+++.+|+|.|+|.|.|..|.++..+.|.|..
T Consensus       261 G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  337 (361)
T 2xot_A          261 GDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVRNG--DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYN  337 (361)
T ss_dssp             TCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEETT--EEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEES
T ss_pred             CCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEeecC--eEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEe
Confidence            789999999999 9999999997765432 1  111222455  799999999999999999999999999999999864


Q ss_pred             cccchhhhhhcccccccCccceeeeccc--CCcee
Q psy12422         78 EEESKEQQELAHNFLYSGDRKYIEKHIR--PAPAI  110 (356)
Q Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~--p~p~i  110 (356)
                      ..             .+|..+.+.|.+.  |.|.|
T Consensus       338 ~~-------------~~g~~~~l~C~~~g~P~P~i  359 (361)
T 2xot_A          338 FT-------------LHGHHDTLNAAADPWSHPQF  359 (361)
T ss_dssp             SC-------------CC------------------
T ss_pred             ee-------------ccCCceEEEEEeCCCCCCcc
Confidence            31             6788999999987  55554

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.43  E-value=3.9e-12  Score=101.16  Aligned_cols=72  Identities=18%  Similarity=0.347  Sum_probs=53.6

Q ss_pred             CceeecCCCeEEEEEEEcCCC--CCeEEEEECC--EE---cc--------------CCCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTKNG--QP---LN--------------SSNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~g--~~---~~--------------~~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ..+.+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +.              ...++....+  .+..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            456789999999999998876  4779999842  11   10              1234444433  246789999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy12422        254 PEDEGVYVCTATNSL  268 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~  268 (356)
                      .+|+|.|.|.+.|..
T Consensus        88 ~~D~G~Y~C~~~~~~  102 (223)
T 1dee_B           88 AEDTAVYYCAKVKFY  102 (223)
T ss_dssp             GGGCEEEEEEEESSS
T ss_pred             HHHCEEEEEEEeccc
Confidence            999999999999875

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.43  E-value=2.3e-13  Score=111.57  Aligned_cols=68  Identities=15%  Similarity=0.160  Sum_probs=49.4

Q ss_pred             eeecCCCeEEEEEEEcCC-CCC--eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        199 KTIDDGQCLDLSAVVKGD-PEP--RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~-p~p--~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ..+.+|+.++|.|.+.|. |.+  .|+|+|++..+.....   .......+|.+...+.+|.+.|+|+|.|..+
T Consensus        96 ~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~  166 (291)
T 1mq8_A           96 SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGANFSCRTELDLR  166 (291)
T ss_dssp             SBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECCCSSSCSSCEEEEEEEEECG
T ss_pred             ccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC---CCCCceEEEEeeeeeccCCceEEEEEEecCC
Confidence            458899999999999665 443  5899999977753220   0112234677777777788899999999765

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.43  E-value=2.5e-12  Score=102.05  Aligned_cols=126  Identities=15%  Similarity=0.282  Sum_probs=83.4

Q ss_pred             CceeecCCCeEEEEEEEcCCC--CCeEEEEECC--EE---cc--------------CCCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTKNG--QP---LN--------------SSNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~g--~~---~~--------------~~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ..+.+.+|++++|.|.+.+.|  .+.+.|+|..  ..   +.              ...++....+  .+..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            446899999999999998876  5789999842  11   10              1234444432  346789999999


Q ss_pred             CCCCeEEEEEEEcCCCce-----EEEEEEec--CCC---------------------------Cc-cceeEEeCC-----
Q psy12422        254 PEDEGVYVCTATNSLGTA-----ETKCKLTP--LNS---------------------------SN-ILDLKYKNG-----  293 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~g~~-----~~~~~l~p--~~~---------------------------~~-~~~~~~~~~-----  293 (356)
                      .+|+|.|.|.+.|..+..     ...+.+..  ...                           |. ...+.|.++     
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~  167 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDIT  167 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCE
T ss_pred             hhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecc
Confidence            999999999999875421     11222220  000                           10 012334321     


Q ss_pred             ----------------eEEEEEecCCCCCCeEEEEEEEcCCcceE
Q psy12422        294 ----------------VASLQIQEVFPEDEGVYVCTATNSLGTAE  322 (356)
Q Consensus       294 ----------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  322 (356)
                                      .+.|.|..+..+|+|.|+|.|.|..|...
T Consensus       168 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          168 TVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             eEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence                            12488888888999999999999988755

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.43  E-value=8.3e-13  Score=105.44  Aligned_cols=73  Identities=22%  Similarity=0.356  Sum_probs=54.6

Q ss_pred             CceeecCCCeEEEEEEEcCCCC----CeEEEEEC--CEEcc----------------CCCceeEEEe--CCEEEEEEccC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPE----PRVSWTKN--GQPLN----------------SSNILDLKYK--NGVASLQIQEV  252 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~----p~i~W~~~--g~~~~----------------~~~~~~~~~~--~~~~~L~i~~v  252 (356)
                      ....+.+|++++|.|.+.+.|.    +.+.|+|.  |..+.                ...++....+  .+...|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV   87 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence            4567899999999999998885    88999984  22110                1134444332  24579999999


Q ss_pred             CCCCCeEEEEEEEcCCC
Q psy12422        253 FPEDEGVYVCTATNSLG  269 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~~g  269 (356)
                      +.+|+|.|.|.+.|..|
T Consensus        88 ~~~D~G~Y~C~~~~~~g  104 (228)
T 3bae_H           88 DTADTATYYCARRGFYG  104 (228)
T ss_dssp             CGGGCEEEEEEEEEEST
T ss_pred             CcccCEEEEEEEecCCC
Confidence            99999999999998754

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.42  E-value=7.8e-13  Score=92.19  Aligned_cols=73  Identities=25%  Similarity=0.385  Sum_probs=59.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |++++|.|.+.+.  |.++|||+|..+..+ ++.+...+....|.|.+++.+|+|.|+|.|    ++....+.|.|...+
T Consensus        23 G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~n~~~~~~l~V~~~p   96 (108)
T 2dm7_A           23 GATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC----GQERTSATLTVRALP   96 (108)
T ss_dssp             TSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEE----TTEEEEEECEEECCC
T ss_pred             CCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEE----cCCEEEEEEEEecCC
Confidence            7899999999765  689999999988754 455556667778999999999999999999    445677788887643

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.42  E-value=6.5e-12  Score=117.69  Aligned_cols=78  Identities=13%  Similarity=0.264  Sum_probs=61.2

Q ss_pred             CCceEEEEEeccCCCCeeE-Ee--eCCEEcccCCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCce-eEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVK-WY--KGNRELSKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGT-DETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~-W~--k~g~~l~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~v   75 (356)
                      |++++|.|.+.|.|.|.+. |+  +||..+....+... ......+|.|.+++..|+|.|+|.|.|..|. .+..+.|.|
T Consensus       179 G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V  258 (731)
T 2v5y_A          179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV  258 (731)
T ss_dssp             TSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEE
Confidence            7899999999999999998 88  78887754322111 1122358999999999999999999999998 666677777


Q ss_pred             ecc
Q psy12422         76 ESE   78 (356)
Q Consensus        76 ~~~   78 (356)
                      ..+
T Consensus       259 ~~~  261 (731)
T 2v5y_A          259 KEP  261 (731)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            654

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.42  E-value=1.2e-12  Score=91.32  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=61.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCE-Ecc--------cCCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNR-ELS--------KRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~-~l~--------~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |++++|.|.+.+.|.+.+.|+|++. .+.        ..++... ...+..+|.|.+++.+|+|.|+|.+.| .+..+..
T Consensus        21 G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~~~~~~~   99 (108)
T 3m45_A           21 GGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-MPVKTSK   99 (108)
T ss_dssp             TSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-SSCEEEE
T ss_pred             CCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-CCCcEEE
Confidence            7899999999999999999999875 221        1233332 233567999999999999999999999 8888888


Q ss_pred             EEEEEecc
Q psy12422         71 CVVIVESE   78 (356)
Q Consensus        71 ~~l~v~~~   78 (356)
                      +.|.|.++
T Consensus       100 ~~L~V~~~  107 (108)
T 3m45_A          100 AYLTVLGV  107 (108)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            99988764

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.42  E-value=9.1e-13  Score=97.14  Aligned_cols=79  Identities=16%  Similarity=0.232  Sum_probs=64.6

Q ss_pred             CCceEEEEEeccCCCCeeEEe---------eCCEEcccCCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWY---------KGNRELSKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~---------k~g~~l~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |++++|.|.+.+.|.+.+.|+         +++..+...++... ...+..+|+|.+++.+|+|.|+|.+.|. |.....
T Consensus        53 G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~-~~~~~~  131 (145)
T 1z9m_A           53 GGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM-PVRTAK  131 (145)
T ss_dssp             TSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSS-SCEEEE
T ss_pred             CCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcC-CCceEE
Confidence            789999999999998999999         55555544444432 3445679999999999999999999999 888889


Q ss_pred             EEEEEecccc
Q psy12422         71 CVVIVESEEE   80 (356)
Q Consensus        71 ~~l~v~~~~~   80 (356)
                      +.|.|.+++.
T Consensus       132 ~~L~V~~~P~  141 (145)
T 1z9m_A          132 SLVTVLGIPQ  141 (145)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEeCCC
Confidence            9999987654

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.42  E-value=6.8e-12  Score=97.22  Aligned_cols=74  Identities=16%  Similarity=0.262  Sum_probs=60.0

Q ss_pred             eeecCCCeEEEEEEEcCCCCC--eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEP--RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      +.+..|++++|.|.+ +.|.|  .|.|++.+..+   .+  .....+...|.|.+++.+|.|.|.|.|.|..+.....+.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~   90 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GA--VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ   90 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CC--EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---Cc--EEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence            689999999999999 88888  99999955433   22  222456679999999999999999999999887766666


Q ss_pred             Ee
Q psy12422        277 LT  278 (356)
Q Consensus       277 l~  278 (356)
                      |.
T Consensus        91 lt   92 (210)
T 1gsm_A           91 LL   92 (210)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=8.8e-14  Score=94.76  Aligned_cols=68  Identities=21%  Similarity=0.345  Sum_probs=55.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee--EEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD--ETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~--~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.|.|||+|..+....        ...|.|.+++.+|+|.|+|.|.|..+..  +..+.|.|.
T Consensus        25 G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~v~V~   94 (96)
T 2ens_A           25 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP--------SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISII   94 (96)
T ss_dssp             TCEEEEECCCSSCSSCCCCCEESSSBCSSCC--------CSEEEEESCCTTTCEEEECEECCSSCCCEECCCEEEEEC
T ss_pred             CCeEEEEEEEccCCCCEEEEEECCEECcCCC--------CCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEEEEEe
Confidence            7899999999999999999999998876432        1289999999999999999999965543  334555554

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.41  E-value=1.8e-12  Score=92.73  Aligned_cols=88  Identities=20%  Similarity=0.319  Sum_probs=67.8

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEE-cc-------CCCceeEE-EeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP-LN-------SSNILDLK-YKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~-~~-------~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      .+..+.+.+|++++|.|.+.+.|.+.+.|++++.. +.       ...++... ......+|.|.+++.+|+|.|.|.|.
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   86 (124)
T 3rbg_A            7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHY   86 (124)
T ss_dssp             SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEE
Confidence            34567899999999999999999999999985433 21       22333332 24456799999999999999999999


Q ss_pred             cCCCceEEEEEEecCCCC
Q psy12422        266 NSLGTAETKCKLTPLNSS  283 (356)
Q Consensus       266 n~~g~~~~~~~l~p~~~~  283 (356)
                      |. |.....+.|.+...|
T Consensus        87 n~-g~~~~~~~l~V~~~P  103 (124)
T 3rbg_A           87 SD-SVSTKEVKVIVLATM  103 (124)
T ss_dssp             SS-SEEEEEEEEEEECC-
T ss_pred             cC-CCCcEEEEEEEEeCC
Confidence            99 888888888755444

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.41  E-value=1.8e-12  Score=116.90  Aligned_cols=92  Identities=28%  Similarity=0.408  Sum_probs=85.0

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      ..|.+...+.+..+.+|+++.|.|.+.|.|.|.++|++++..+..+.++.+..++...+|.|.++.++|+|.|+|+|.|.
T Consensus       481 ~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~  560 (573)
T 3uto_A          481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS  560 (573)
T ss_dssp             GSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeC
Confidence            45667777778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEEec
Q psy12422        268 LGTAETKCKLTP  279 (356)
Q Consensus       268 ~g~~~~~~~l~p  279 (356)
                      .|..+..+.|++
T Consensus       561 ~G~~~~~v~l~V  572 (573)
T 3uto_A          561 YGTKEEIVFLNV  572 (573)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            999999888763

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.40  E-value=1.6e-12  Score=91.24  Aligned_cols=75  Identities=16%  Similarity=0.337  Sum_probs=57.9

Q ss_pred             CCceEEEEEeccC--CCCeeEEeeCCEEcccCCee--EEecC-------CeEEEEEeeCCCCCCeEEEEEEEeCCcee-E
Q psy12422          1 MQNVIKVKVGSTK--PPPTVKWYKGNRELSKRDYS--MSYSD-------GVVSMEIIDCKPEDSGEYKCVATNKHGTD-E   68 (356)
Q Consensus         1 g~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~~~--~~~~~-------~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~   68 (356)
                      |++++|.|.+.+.  |.+.+.|+|+|..+......  .....       ...+|.|.+++.+|+|.|+|.|.|..|.. +
T Consensus        25 G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s  104 (112)
T 3so5_A           25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYS  104 (112)
T ss_dssp             TCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeCCCcEEE
Confidence            7899999999854  46899999999998754311  11111       13589999999999999999999999984 4


Q ss_pred             EEEEEEE
Q psy12422         69 TNCVVIV   75 (356)
Q Consensus        69 ~~~~l~v   75 (356)
                      ..+.|.|
T Consensus       105 ~~~~l~V  111 (112)
T 3so5_A          105 VXAXLTI  111 (112)
T ss_dssp             CCEEEEE
T ss_pred             eEEEEEe
Confidence            6677765

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.40  E-value=3.2e-12  Score=104.00  Aligned_cols=73  Identities=18%  Similarity=0.343  Sum_probs=54.7

Q ss_pred             CCceeecCCCeEEEEEEEcCCC--CCeEEEEECC--EEcc-----------------CCCceeEEEe--CCEEEEEEccC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP--EPRVSWTKNG--QPLN-----------------SSNILDLKYK--NGVASLQIQEV  252 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~g--~~~~-----------------~~~~~~~~~~--~~~~~L~i~~v  252 (356)
                      +....+.+|++++|.|.+.+.|  .+.+.|+|+.  ..+.                 ...++....+  .+...|.|.++
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   92 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL   92 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence            4566899999999999999887  6789999852  2110                 0123433332  34678999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy12422        253 FPEDEGVYVCTATNSL  268 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~~  268 (356)
                      +.+|+|.|.|.+.|..
T Consensus        93 ~~~DsG~Y~C~~~~~~  108 (261)
T 2xqy_G           93 TSEDSAVYYCGRLGYV  108 (261)
T ss_dssp             CGGGCEEEEEEEECTT
T ss_pred             CcccCeEEEEEEecCC
Confidence            9999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-17
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-11
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-15
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-07
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-14
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-09
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-06
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	5e-14
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-13
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	4e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-13
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	8e-13
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-08
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	6e-12
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	9e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	7e-12
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	8e-12
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	3e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	7e-11
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-10
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	6e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-10
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-08
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-06
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-10
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-06
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-10
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	9e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	0.002
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-10
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-09
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	5e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-09
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-09
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	7e-05
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	7e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-09
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	5e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	9e-09
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	9e-09
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	9e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	5e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	3e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-08
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	5e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-08
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.004
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	7e-08
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	6e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	8e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-06
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	2e-07
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-07
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	4e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	6e-07
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	0.001
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	9e-07
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.001
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	9e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	1e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	8e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.003
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-06
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	9e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	5e-06
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	2e-05
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	1e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	1e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	3e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	3e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	3e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	6e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.004
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	3e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	3e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	4e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	7e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	3e-05
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	3e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.004
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	6e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	6e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	8e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.001
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.004
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.001
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.001
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	0.002

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 1e-17
 Identities = 20/89 (22%), Positives = 35/89 (39%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
           PQ      D+ +  G+ ++L   V G      +W K  + +  S  + ++     + L I
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                E  G Y     N LG+ + +  LT
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLT 89

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 3e-11
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 5  IKVKVGST---------KPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSG 54
           KV+ G +           P T  W K  +++ + +   +  S+    + I+  + E  G
Sbjct: 10 QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCG 69

Query: 55 EYKCVATNKHGTDETNCVVIV 75
           Y  +  NK G+ +    + V
Sbjct: 70 CYTLLVENKLGSRQAQVNLTV 90

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 2e-15
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN-SSNILDLKYKNGVASL 247
             +   +L    +     +       G+P P + W KNG+       I   K +N   SL
Sbjct: 7   TEKMEKRL--HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSL 64

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            ++ V P D+G Y C   N  G+      L 
Sbjct: 65  IMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 6e-14
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 2  QNVIKVKVGST---------KPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKP 50
          + +  V   +T          P PT++W K  +E     R       +   S+ +    P
Sbjct: 12 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 71

Query: 51 EDSGEYKCVATNKHGTDETNCVVIV 75
           D G Y CV  N++G+      + V
Sbjct: 72 SDKGNYTCVVENEYGSINHTYHLDV 96

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 66.7 bits (162), Expect = 1e-14
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 188 TPPQFANKLTDK-TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
           + P++  K      +  GQ + +   V G P P V W+ N +PL+       +     + 
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-----RATVTDSG 55

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           L I+ V   D+G Y C ATN  G    +  + 
Sbjct: 56  LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 55.5 bits (133), Expect = 9e-11
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 13/83 (15%)

Query: 2  QNVIKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPED 52
          + VI VK G            P P V W    + LS    +++ S     + I   K  D
Sbjct: 10 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG----LVIKGVKNGD 65

Query: 53 SGEYKCVATNKHGTDETNCVVIV 75
           G Y C ATN+HG      +V V
Sbjct: 66 KGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 46.3 bits (109), Expect = 2e-07
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 297 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
           L I+ V   D+G Y C ATN  G    +  + V
Sbjct: 56  LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 4e-14
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPL-NSSNILDLKYKNGV 244
           +M  P+   ++  +T+  G        V G P+P   W KNG  +  S  I     ++ V
Sbjct: 1   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 60

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             L I++V  ED    +  A N  G   +   L 
Sbjct: 61  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 94

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 5e-09
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 11 STKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 68
            KP P  +WYK   ++ +  R Y     D V  + I D   EDS      A N  G   
Sbjct: 29 VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETS 88

Query: 69 TNCVVIVES 77
          ++  ++V++
Sbjct: 89 SHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 7e-06
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 298 QIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331
            I++V  ED    +  A N  G   +   L V++
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.9 bits (157), Expect = 5e-14
 Identities = 26/89 (29%), Positives = 36/89 (40%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
           P+F  K     + +GQ  +    V     P V+W K+ + L  S     +Y      L I
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             V  +D+G Y   A NS GT E    L 
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (114), Expect = 4e-08
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 5  IKVKVGST---------KPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSG 54
           +V  G +           PP V W+K +REL +   Y   Y+     + I   K +D G
Sbjct: 11 TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKG 70

Query: 55 EYKCVATNKHGTDETNCVVIVESEEE 80
          EY   A N +GT E    + V    E
Sbjct: 71 EYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (107), Expect = 4e-07
 Identities = 21/91 (23%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 244 VASLQIQEVFPEDEGVYVCTAT-NSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEV 302
           +      EV       + C    +S            L  S     +Y      L I  V
Sbjct: 5   IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRV 64

Query: 303 FPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
             +D+G Y   A NS GT E    L V    
Sbjct: 65  KGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.3 bits (153), Expect = 2e-13
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
           P + + +TD   D G  L  S V  G P P V W ++GQPL S N      +     L+ 
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR----IEVSGGELRF 57

Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            ++  ED G+Y C A N  GT     +LT
Sbjct: 58  SKLVLEDSGMYQCVAENKHGTVYASAELT 86

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.9 bits (113), Expect = 4e-08
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 12/82 (14%)

Query: 5  IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
           +  +GS          KP P V+W +  + L+ ++           +       EDSG 
Sbjct: 11 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG---ELRFSKLVLEDSGM 67

Query: 56 YKCVATNKHGTDETNCVVIVES 77
          Y+CVA NKHGT   +  + V++
Sbjct: 68 YQCVAENKHGTVYASAELTVQA 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVF 303
           +  +   E     +  + C A+   G      +            + +     L+  ++ 
Sbjct: 5   LDVITDTEADIGSDLRWSCVAS---GKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLV 61

Query: 304 PEDEGVYVCTATNSLGTAETKCKLTVRS 331
            ED G+Y C A N  GT     +LTV++
Sbjct: 62  LEDSGMYQCVAENKHGTVYASAELTVQA 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 3e-13
 Identities = 25/88 (28%), Positives = 39/88 (44%)

Query: 191 QFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ 250
           +   K    T+ +G+    S    G+P P V+W + GQ L++S    +      ++ +I 
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 251 EVFPEDEGVYVCTATNSLGTAETKCKLT 278
            V   DEG Y     NS G  E +  LT
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEAEFTLT 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 2e-09
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 5  IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVV-SMEIIDCKPEDSG 54
          + V  G +         +P PTV W +  + LS        +     + EI   +  D G
Sbjct: 9  MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEG 68

Query: 55 EYKCVATNKHGTDETNCVVIVE 76
           Y  V  N  G  E    + ++
Sbjct: 69 NYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
           + +I  V   DEG Y     NS G  E +  LT++
Sbjct: 56  TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 63.0 bits (152), Expect = 4e-13
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP-LNSSNILDLKYKNGVAS 246
             P F   + D  + +G        V+G P+P V W K+  P   S +      + G  S
Sbjct: 7   VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 66

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           L I EV  +D+  Y C A NSLG A    +L 
Sbjct: 67  LTISEVCGDDDAKYTCKAVNSLGEATCTAELL 98

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 52.2 bits (124), Expect = 2e-09
 Identities = 14/68 (20%), Positives = 24/68 (35%)

Query: 10  GSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
           G   P           + S+        +G  S+ I +   +D  +Y C A N  G    
Sbjct: 34  GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 93

Query: 70  NCVVIVES 77
              ++VE+
Sbjct: 94  TAELLVET 101

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 8e-13
 Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 14/104 (13%)

Query: 189 PPQFANKL-TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD---------- 237
            P     L  + +   G  ++    V  D +P + W K+ +   S    D          
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 238 ---LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                    +  L I+ V  ED G Y C A NS+G +     LT
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 3e-08
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 23/94 (24%)

Query: 5   IKVKVGST---------KPPPTVKWYKGNREL--------------SKRDYSMSYSDGVV 41
               VG              P ++W K   +                K     +    + 
Sbjct: 15  ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIE 74

Query: 42  SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75
            + I +   ED+GEY C+A N  G    +  + V
Sbjct: 75  VLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.4 bits (148), Expect = 1e-12
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 189 PPQF--ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY--KNGV 244
           PP       + + T + GQ + L     G PEP +SWTK+G+P+ +    D K+   +  
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           + L I+ V   DE  YVC A N  G  +    L 
Sbjct: 63  SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 13 KPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 69
           P PT+ W K    +    + D    +SD    + I +    D  EY C+A NK G  + 
Sbjct: 32 FPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDA 91

Query: 70 NCVVIV 75
          +  + V
Sbjct: 92 SIHLKV 97

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.1 bits (142), Expect = 6e-12
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 189 PPQFANKL-TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
            P    K   D     GQ + L     G+P P++ W K      S      K+ +    L
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS------KWLSSEPLL 57

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            IQ V  EDEG Y C A N  G    + ++ 
Sbjct: 58  HIQNVDFEDEGTYECEAENIKGRDTYQGRII 88

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.1 bits (111), Expect = 9e-08
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
          P P +KW K +        +  +      + I +   ED G Y+C A N  G D     +
Sbjct: 33 PVPQIKWRKLDG-----SQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87

Query: 74 IVES 77
          I+ +
Sbjct: 88 IIHA 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 289 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS 331
           K+ +    L IQ V  EDEG Y C A N  G    + ++ + +
Sbjct: 49  KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 7e-12
 Identities = 25/146 (17%), Positives = 39/146 (26%), Gaps = 26/146 (17%)

Query: 189 PPQFANKLTDKTIDD-----GQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG 243
           PP+       +  D      G  L L   + GDP P V W K     N +          
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKA---------- 53

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVF 303
                                           K     +   + ++     +   ++   
Sbjct: 54  -----------PARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAE 102

Query: 304 PEDEGVYVCTATNSLGTAETKCKLTV 329
            EDEGVY  T  N +G  +    + V
Sbjct: 103 KEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 10/48 (20%), Positives = 17/48 (35%)

Query: 28  SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75
           ++    +  +       +   + ED G Y     N  G D+ N  V V
Sbjct: 81  TEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 8e-12
 Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 4/89 (4%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQP---LNSSNILDLKYKNGVA 245
            P F  ++ +  ++ GQ         G           G          I     +  +A
Sbjct: 2   TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETK 274
           S  +      D G Y C      G   + 
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGISN 89

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 3e-07
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 4/78 (5%)

Query: 2  QNVIKVKVGSTKPPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYK 57
          Q          +     + +    ++     K     S    + S  +++    D+G+Y+
Sbjct: 17 QFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYR 76

Query: 58 CVATNKHGTDETNCVVIV 75
          C+   + G   +N   +V
Sbjct: 77 CMIRTEGGVGISNYAELV 94

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (135), Expect = 7e-11
 Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 9/99 (9%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSA-VVKGDPEPRVSWTKNGQPLNSSNILD--------LK 239
           PP         ++  G    L+     G P    SW K+G  + +++             
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                  L    V   D G Y C A N  GTA       
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 100

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNREL---------SKRDYSMSYSDGVVSMEIIDCKPEDSG 54
           V+        PP    W+K    +         +  + S +       +        DSG
Sbjct: 21  VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 80

Query: 55  EYKCVATNKHGTDETNCVVIVE 76
           EY C A N +GT   +    ++
Sbjct: 81  EYYCQAQNGYGTAMRSEAAHMD 102

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-10
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK--NGVASLQIQEVFP 254
              T+  GQ + L+  V+G  EP + W K+G  + + + L +     + +  L ++ V  
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63

Query: 255 EDEGVYVCTATNSLGTAETK 274
            D G Y C   +   T  ++
Sbjct: 64  SDAGRYWCQVEDGGETEISQ 83

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 6e-08
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 13/85 (15%)

Query: 5  IKVKVGST---------KPPPTVKWYKGNRELSKRDY---SMSYSDGVVSMEIIDCKPED 52
          + V  G              P ++W K    +   D     +S    +  + +   +  D
Sbjct: 6  LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 65

Query: 53 SGEYKCVATNKHGTDETNCV-VIVE 76
          +G Y C   +   T+ +  V + VE
Sbjct: 66 AGRYWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 289 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETK-CKLTV 329
             ++ +  L ++ V   D G Y C   +   T  ++   LTV
Sbjct: 48  SEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 2e-10
 Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTKN---------GQPLNSSNIL 236
              F  +  D  +  G  +  SA V G      P V W K          GQ L   +  
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 237 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           D   K  +  L I +  P   G Y C  +       +   LT
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 14  PPPTVKWYK----------GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
            PP VKW+K          G        Y  +    +  + I D +P  +G Y+C  + K
Sbjct: 35  KPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTK 94

Query: 64  HGTDETNCVVIVE 76
              D +N  + V 
Sbjct: 95  DKFDCSNFNLTVH 107

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 10/41 (24%), Positives = 14/41 (34%)

Query: 290 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
            K  +  L I +  P   G Y C  +       +   LTV 
Sbjct: 67  SKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.5 bits (130), Expect = 2e-10
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 189 PPQFANKLTDKTIDDGQCLD---LSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
            P F  +       +G   +   L+   + +P     W  NG  L               
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPD-SRYRLVAGD 62

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETK 274
            +    V  +D G Y C ATN+ GT  ++
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSR 91

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 70
          PP T +W     EL     S         +     K +D+G Y+CVATN  GT  + 
Sbjct: 35 PPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSR 91

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.6 bits (130), Expect = 3e-10
 Identities = 19/90 (21%), Positives = 29/90 (32%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
            P+         I  G   +L     G P+P  +WT        +  L +  K+   S+ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                  D G Y     N LG  E   ++ 
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (89), Expect = 9e-05
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 5  IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSM-EIIDCKPEDSG 54
          IK+K G T          P PT  W  G+   +     +  +    +       K  DSG
Sbjct: 12 IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSG 71

Query: 55 EYKCVATNKHGTDETNCVVIVE 76
           YK    N+ G DE    VIV+
Sbjct: 72 NYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 8/34 (23%), Positives = 12/34 (35%)

Query: 297 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
           +        D G Y     N LG  E   ++ V+
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 5e-10
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 209 LSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK-------NGVASLQIQEVFPEDEGVYV 261
           +   V G P P + W  NG  LN ++ +  ++             L++ +    + G Y 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 262 CTATNSLGTAETKCKLT 278
             A N  G A       
Sbjct: 80  LLAANPFGQASASIMAA 96

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 13 KPPPTVKWYKGNRELSKRDY--------SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 64
          +P P+++W      L++  +        + + +     + +      ++G Y  +A N  
Sbjct: 27 QPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 86

Query: 65 GTDETNCVVIV 75
          G    + +   
Sbjct: 87 GQASASIMAAF 97

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 1e-09
 Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLN-----SSNILDLKYKNG 243
            P     L   T D   C+  +  VKG+P+P + W  NG  LN      + I    +   
Sbjct: 4   APTI-TFLESPTSDHHWCIPFT--VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
              LQ+      + G Y   A N  G  E +    
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 5e-07
 Identities = 11/69 (15%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 13 KPPPTVKWYKGNRELS------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 66
           P P ++W+     L+       + +  ++++    +++ +    ++G+Y  +A N++G 
Sbjct: 28 NPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK 87

Query: 67 DETNCVVIV 75
          DE       
Sbjct: 88 DEKQISAHF 96

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 52.4 bits (124), Expect = 2e-09
 Identities = 14/86 (16%), Positives = 28/86 (32%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
            P   ++  +    +     L  +++G+ +      K      +    +   +    SL 
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETK 274
                  DEG Y C A    G A ++
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVASSR 87

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 9/64 (14%), Positives = 24/64 (37%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
                W K  +  + ++++ +      S+  +  +  D G Y+C A    G   +  + 
Sbjct: 31 QGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVIS 90

Query: 74 IVES 77
            ++
Sbjct: 91 FRKT 94

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 296 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRST 332
           SL        DEG Y C A    G A ++  ++ R T
Sbjct: 59  SLVFLRPQASDEGHYQCFAETPAGVASSR-VISFRKT 94

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 3e-09
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRV-------SWTKNGQPLNSSNILDLKYK 241
           PP+     + + I++G+   L    +  P                     S +   +   
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 242 NGVASLQIQEVFPED-EGVYVCTATNSLGTAETKCKLT 278
            G + L I+ +  E   G Y C  T+S G+ +    L 
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 7e-05
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 12  TKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHGTDETN 70
                T    K     S+  + +S S G   + I +     D G+Y+C  T+  G+D+  
Sbjct: 36  AWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI 95

Query: 71  CVVIV 75
             + V
Sbjct: 96  ITLRV 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 7e-09
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 8/98 (8%)

Query: 189 PPQFANKLTDKTIDDGQCLDLS-AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG---- 243
           PP         +   G    L+ +   G P    +W K+G  + ++      + N     
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 244 ---VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                 L    +   D G Y C A N  GT  T   + 
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 99

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-07
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 4   VIKVKVGSTKPPPTVKWYKGNRE--------LSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
           V+        PP    W+K             +  + S   +     +        D+GE
Sbjct: 21  VLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE 80

Query: 56  YKCVATNKHGTDETNCVVIVESEE 79
           Y C A N +GT  T+  V +E+ E
Sbjct: 81  YSCEARNGYGTPMTSNAVRMEAVE 104

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 8e-09
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN--ILDLKYKNGVASLQIQEV 252
           +L D T   G+ ++L   V  + +  V W KNG+ +         ++ +     L I+  
Sbjct: 6   QLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGA 64

Query: 253 FPEDEGVYVCTATNSLGTAE 272
              D   Y    T    +A+
Sbjct: 65  TKADAAEYSVMTTGGQSSAK 84

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 11/73 (15%)

Query: 5  IKVKVGST--------KPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDS 53
               G          +    VKW+K   E+    K  Y +        + I      D+
Sbjct: 10 TTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADA 69

Query: 54 GEYKCVATNKHGT 66
           EY  + T    +
Sbjct: 70 AEYSVMTTGGQSS 82

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 5e-05
 Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 6/85 (7%)

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETK--CKLTPLNSSNILDLKYKNGVASLQIQEVFP 304
           L+    +  +     C  +      +     +       +   ++ +     L I+    
Sbjct: 7   LEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 66

Query: 305 EDEGVYVCTATNSLGTAETKCKLTV 329
            D   Y    T    +A    KL+V
Sbjct: 67  ADAAEYSVMTTGGQSSA----KLSV 87

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 9e-09
 Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 6/93 (6%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPE-PRVSWTKNGQPLNSSNILDLKYKN---- 242
               +  + ++ +I  G   +L   VK     P V+W K                     
Sbjct: 2   DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 243 -GVASLQIQEVFPEDEGVYVCTATNSLGTAETK 274
                L  + V P D G Y C+A       E+ 
Sbjct: 62  ISFFILHFEPVLPNDNGSYRCSANFQSNLIESH 94

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 5   IKVKVGSTKPPPTVKWYKGNRELSKRD------YSMSYSDGVVSMEIIDCKPEDSGEYKC 58
           ++  V      P V W K N     +       +    +     +      P D+G Y+C
Sbjct: 23  LECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRC 82

Query: 59  VATNKHGTDETNCVVIVESE 78
            A  +    E++   +  ++
Sbjct: 83  SANFQSNLIESHSTTLYVTD 102

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 9e-09
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 189 PPQ-FANKLTDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
           P      +   +++  G  +      K   P   + WT+       S  +D         
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD-----FNGI 55

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           L I+ V P D G YVCT +N     +    L 
Sbjct: 56  LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 9e-07
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 4  VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
                 S  P  T+ W + +                  + I + +P D+G Y C  +N 
Sbjct: 21 TFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG----ILTIRNVQPSDAGTYVCTGSNM 76

Query: 64 HGTDETNCVVIVE 76
             D+    + V+
Sbjct: 77 FAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 5e-06
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 244 VASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVF 303
           V   + Q V P  +  ++CTA +                +  L  +  +    L I+ V 
Sbjct: 6   VEEQRSQSVRPGADVTFICTAKSKSPAYTLVW---TRLHNGKLPSRAMDFNGILTIRNVQ 62

Query: 304 PEDEGVYVCTATNSLGTAETKCKLTVR 330
           P D G YVCT +N     +    L V+
Sbjct: 63  PSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN--GVAS 246
            PQ+ +K  D     G    +  +   +P    ++ KNG+ +N +    +   N      
Sbjct: 5   VPQYVSK--DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETK-CKLT 278
           L  +   PEDEGVY C   N +G  +    KLT
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT 95

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 12/84 (14%)

Query: 1  MQNVIKVKVGST---------KPPPTVKWYKGNR---ELSKRDYSMSYSDGVVSMEIIDC 48
          +   +  K G            P     ++K  +      +   +         +     
Sbjct: 9  VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 68

Query: 49 KPEDSGEYKCVATNKHGTDETNCV 72
           PED G Y C   N  G  + + +
Sbjct: 69 LPEDEGVYTCEVDNGVGKPQKHSL 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 1/89 (1%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQI 249
             F N  T +   +G+   +   V     P + W   G+ +     +          LQI
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVR-FIVLSNNYLQI 60

Query: 250 QEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           + +   DEG Y C              + 
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDIQ 89

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.7 bits (107), Expect = 3e-07
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 5  IKVKVGST---------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 55
           + K G             PPT+ W    R++  +            ++I   K  D G 
Sbjct: 11 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT 70

Query: 56 YKCVATNKHG--TDETNCVVIV 75
          Y+C          +  +  VIV
Sbjct: 71 YRCEGRILARGEINFKDIQVIV 92

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 185 TAMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN-- 242
           T   PP+    L +  +    C++    V+G+P P + W  NGQPL  S I+ ++Y    
Sbjct: 1   TVYYPPRV-VSLEEPELRLEHCIEFV--VRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 57

Query: 243 --GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                 L   +    + G Y   A N LGTA       
Sbjct: 58  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 95

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 5e-06
 Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 5/68 (7%)

Query: 13 KPPPTVKWYKGNRELS-----KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 67
           PPPT+ W    + L        +Y          +        ++G Y  +A N  GT 
Sbjct: 29 NPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA 88

Query: 68 ETNCVVIV 75
                  
Sbjct: 89 NQTINGHF 96

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 4e-08
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 189 PPQFANKLTDK-TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG-VAS 246
              F  KL     +  G  + L+  +  D +  V W KNGQ +  S    +    G   +
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 63

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAE 272
           L I +    D+  Y C       + E
Sbjct: 64  LTISQCSLADDAAYQCVVGGEKCSTE 89

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 14/86 (16%)

Query: 1  MQNVIKVKVGST--------KPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKP 50
          ++   +V  G               VKW K  +E+      Y         ++ I  C  
Sbjct: 12 LEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSL 71

Query: 51 EDSGEYKCVATNKHGTDETNCVVIVE 76
           D   Y+CV       ++ +  + V+
Sbjct: 72 ADDAAYQCVVGG----EKCSTELFVK 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.004
 Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 4/41 (9%)

Query: 290 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVR 330
                 +L I +    D+  Y C         +   +L V+
Sbjct: 57  SIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTELFVK 93

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 7e-08
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 14/104 (13%)

Query: 190 PQFANKLTDK-TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL------------ 236
           P   +   +   +D G  + L   V G       W  NG  ++  + +            
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 237 DLKYKNGVASLQIQEVFPEDEGV-YVCTATNSLGTAETKCKLTP 279
           + +    +  L I E+        + C A N+ G      +L  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 6e-05
 Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 23/98 (23%)

Query: 1   MQNVIKVKVGST---------KPPPTVKWYKGNRELS-------------KRDYSMSYSD 38
               ++V +GS          +      W      +              +   +   S 
Sbjct: 8   ANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRST 67

Query: 39  GVVSMEIIDCKPEDSG-EYKCVATNKHGTDETNCVVIV 75
            +  + I + +       + C A N HG D     +I 
Sbjct: 68  LITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 8e-08
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 12/99 (12%)

Query: 192 FANKLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTKNGQPLNSSNI---------LDLK 239
           F  K    T+  G+ +   A VK +    +P + W K      +S            +  
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 240 YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            +     +QI +      G Y C  T           L 
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 12/54 (22%), Positives = 19/54 (35%)

Query: 29  KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 82
           K  +          M+II  K   +G Y+C  T K   D  +  + V     + 
Sbjct: 56  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 8/47 (17%), Positives = 13/47 (27%)

Query: 287 DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTP 333
           +   +     +QI +      G Y C  T           L V  + 
Sbjct: 60  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 106

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-07
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQ 248
            P    ++ + ++D G  + L   V+G    +  W       +++ +      +   +L 
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL- 60

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
                  +     C A N +G AE   ++ 
Sbjct: 61  ANVTSDLNRKNVTCWAENDVGRAEVSVQVN 90

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 11/74 (14%), Positives = 17/74 (22%)

Query: 2  QNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 61
           +V+       +      W     E S           +           +     C A 
Sbjct: 18 DDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAE 77

Query: 62 NKHGTDETNCVVIV 75
          N  G  E +  V V
Sbjct: 78 NDVGRAEVSVQVNV 91

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
             G  +L+IQ V   DEG Y C   +     E   +L V
Sbjct: 77  GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 115

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
             G  +L+IQ V   DEG Y C   +     E   +L 
Sbjct: 77  GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 114

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 30  RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 76
                S  +G V++ I + +  D G Y C   +    +E    + VE
Sbjct: 70  ELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 6e-07
 Identities = 10/90 (11%), Positives = 22/90 (24%), Gaps = 6/90 (6%)

Query: 189 PPQFAN-KLTDKTIDDGQCLDLSAVVKG---DPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
           PP+     L    +  G+   +   V          +   +  + L+             
Sbjct: 1   PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60

Query: 245 AS--LQIQEVFPEDEGVYVCTATNSLGTAE 272
           A+          +    + C A   L +  
Sbjct: 61  ATATFNSTADREDGHRNFSCLAVLDLMSRG 90

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 3/60 (5%)

Query: 6  KVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP---EDSGEYKCVATN 62
          +V         T+  ++GN  L    +  +      +    +      +    + C+A  
Sbjct: 25 RVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVL 84

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 9e-07
 Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 6/88 (6%)

Query: 188 TPPQFANKLTDKTIDDGQCLDLSAVVKG---DPEPRVSWTKNGQPLNSSNILDLKYKNGV 244
           TP +            G+ L L   V+G     +  V   +  + L          +   
Sbjct: 3   TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAE 59

Query: 245 ASLQIQEVFPEDEGVYVCTATNSLGTAE 272
            +  +          + C     L    
Sbjct: 60  VTTTVLVRRDHHGAQFSCRTELDLRPQG 87

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 2/64 (3%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
             TV   +G +E   +          V+  ++  +     ++ C               
Sbjct: 35 AQLTVVLLRGEKE--LKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFE 92

Query: 74 IVES 77
             +
Sbjct: 93 NTSA 96

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 9e-07
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 15/92 (16%)

Query: 189 PPQF--ANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS 246
            P+    +   + T  +           G+P P +   K+G                   
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------------ 49

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            +   V  + EG Y+C A ++ G    +  + 
Sbjct: 50  -ESVTVTRDLEGTYLCRARSTQGEVTREVTVN 80

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 12/64 (18%)

Query: 14 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 73
          P P +K  K              +  +   E +    +  G Y C A +  G       V
Sbjct: 32 PLPELKCLK------------DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTV 79

Query: 74 IVES 77
           V S
Sbjct: 80 NVLS 83

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 191 QFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQ 250
           +    L    +  G+       +  +P+    W   GQPL +S   ++        L + 
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILH 61

Query: 251 EVFPEDEGVYVCTATNSLGTAE 272
                  G     A N+   A 
Sbjct: 62  NCQLGMTGEVSFQAANAKSAAN 83

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 8e-05
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 1  MQNVIKVKVGST--------KPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPE 51
          +  V +V VG T        +P    +W    + L +  D  +        + + +C+  
Sbjct: 8  LYGV-EVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLG 66

Query: 52 DSGEYKCVATNKHGT 66
           +GE    A N    
Sbjct: 67 MTGEVSFQAANAKSA 81

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.003
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPED 306
           L   EVF  +   +    +      + K K  PL +S   ++        L +       
Sbjct: 8   LYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGM 67

Query: 307 EGVYVCTATNSLGTAETKCKLTVR 330
            G     A N    A++   L V+
Sbjct: 68  TGEVSFQAAN----AKSAANLKVK 87

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-06
 Identities = 12/67 (17%), Positives = 19/67 (28%)

Query: 212 VVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA 271
           +   + +  ++W K+      S     +       L       ED G Y C   NS    
Sbjct: 26  LNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL 85

Query: 272 ETKCKLT 278
             K    
Sbjct: 86  RIKISAK 92

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 9e-05
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 4  VIKVKVGSTKPPPTVKWYKGNRE-LSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
          V    +   +   T+ WYK + +     + +         +  +  K EDSG Y CV  N
Sbjct: 21 VRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRN 80

Query: 63 KHGTDETNCVVIV 75
                       
Sbjct: 81 SSYCLRIKISAKF 93

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 5e-06
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 206 CLDLSAV-VKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA 264
           C  +     + +  P++ W K+ +PL   NI    +      L +  V  +  G Y C A
Sbjct: 21  CPYMEFFKNENNELPKLQWYKDCKPLLLDNI---HFSGVKDRLIVMNVAEKHRGNYTCHA 77

Query: 265 TNSLGTAETKCKLT 278
           + +    +      
Sbjct: 78  SYTYLGKQYPITRV 91

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 4  VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
           ++         P ++WYK  + L   +   S       + +++   +  G Y C A+  
Sbjct: 23 YMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--RLIVMNVAEKHRGNYTCHASYT 80

Query: 64 HGTDETNCVVIVE 76
          +   +     ++E
Sbjct: 81 YLGKQYPITRVIE 93

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 10/86 (11%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNILDLKYKNGVASLQ 248
           P F  +  D  +       LS    G PEP  + W +    +              +   
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------SPSV 52

Query: 249 IQEVFPEDEGVYVCTATNSLGTAETK 274
           +         ++ C A N  G A ++
Sbjct: 53  LNVTGVTQSTMFSCEAHNLKGLASSR 78

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 11/75 (14%)

Query: 11 STKPPPTVKWYK-----------GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59
          S  P   V W K             R  S     +       S+ I +    D  EY+  
Sbjct: 19 SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEME 78

Query: 60 ATNKHGTDETNCVVI 74
          + N   T +    V+
Sbjct: 79 SPNITDTMKFFLYVL 93

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 5/88 (5%)

Query: 242 NGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQE 301
            G  +  +    P  E ++            ++ +      S    +       SL I  
Sbjct: 10  YGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFS---SFKNRVYLDTVSGSLTIYN 66

Query: 302 VFPEDEGVYVCTATNSLGTAETKCKLTV 329
           +   DE  Y   + N   T   K  L V
Sbjct: 67  LTSSDEDEYEMESPNITDTM--KFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 11/63 (17%), Positives = 17/63 (26%)

Query: 214 KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET 273
           K   +       +     SS    +       SL I  +   DE  Y   + N   T + 
Sbjct: 29  KKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKF 88

Query: 274 KCK 276
              
Sbjct: 89  FLY 91

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 3e-05
 Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD--------LKYKNGVASL 247
            +D  + + + + L+    G   PRV W        +    +         +     + +
Sbjct: 8   QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGI 67

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
               V  +D G Y C  +   G    +  + 
Sbjct: 68  TFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 6e-04
 Identities = 6/41 (14%), Positives = 14/41 (34%)

Query: 289 KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
           +     + +    V  +D G Y C  +   G    +  + +
Sbjct: 59  RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 7/65 (10%), Positives = 19/65 (29%)

Query: 12  TKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 71
                +              Y+   +     +       +D+GEY C+ + + G +    
Sbjct: 36  KFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEV 95

Query: 72  VVIVE 76
            + + 
Sbjct: 96  SIHLT 100

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 2/86 (2%)

Query: 190 PQFANKLTDK-TIDDGQCLDLSA-VVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASL 247
            +F+ +  D   I +G  +  +       P     W  N  P                +L
Sbjct: 4   QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 63

Query: 248 QIQEVFPEDEGVYVCTATNSLGTAET 273
            I +    D G Y C AT+ +     
Sbjct: 64  YIAKTEASDLGNYSCFATSHIDFITK 89

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWT-------KNGQPLNSSNILDLKYKN 242
           P   +    +    G+   +   ++  P P            ++G     +       + 
Sbjct: 7   PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 66

Query: 243 GVASLQIQEVFPE-DEGVYVCTATNSLGTAETKCKLT 278
            +++L I  +     + +Y CTA NS G+     +L 
Sbjct: 67  VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 103

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 4e-05
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 287 DLKYKNGVASLQIQEVFPE-DEGVYVCTATNSLGTAETKCKLTVRSTP 333
               +  +++L I  +     + +Y CTA NS G+     +L  + + 
Sbjct: 61  ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 108

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 7e-04
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 32  YSMSYSDGVVSMEIIDCKPE-DSGEYKCVATNKHGTDETNCVVIVESEEES 81
              +    + ++ I +         Y C A N  G+D     +  +  E S
Sbjct: 60  TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 110

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 291 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTV 329
           K+G AS+ +  +   D G Y C    + G A  K  L V
Sbjct: 84  KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 241 KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
           K+G AS+ +  +   D G Y C    + G A  K  L 
Sbjct: 84  KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 121

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 32  YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 75
            S     G  S+ + + +  D G Y+C      G       ++V
Sbjct: 79  TSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 6e-04
 Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 7/75 (9%)

Query: 4  VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
           ++           V +        +      Y        I     +DSG Y C     
Sbjct: 21 HLRCHSWKNTALHKVTYL-------QNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVG 73

Query: 64 HGTDETNCVVIVESE 78
               +  V I  ++
Sbjct: 74 SKNVSSETVNITITQ 88

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 6e-04
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 4  VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 63
          V++      KP   V +++          S  +S    +  I       SG+Y C     
Sbjct: 19 VLRCHSWKDKPLVKVTFFQ-------NGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIG 71

Query: 64 HGTDETNCVVI 74
          +    +  V I
Sbjct: 72 YTLYSSKPVTI 82

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 8e-04
 Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 6/93 (6%)

Query: 187 MTPPQFANKLTDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKNGVA 245
           + P Q         +  G    L+  +   D    V W      L +      +      
Sbjct: 1   VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSV---- 56

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            L ++       G  VC  +    T +   +L 
Sbjct: 57  -LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL 88

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 8/59 (13%), Positives = 14/59 (23%), Gaps = 2/59 (3%)

Query: 4  VIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 62
           +       +   TV W              +       + +   +  DSG Y C    
Sbjct: 25 TLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR--LLLRSVQLHDSGNYSCYRAG 81

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.004
 Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 1/75 (1%)

Query: 246 SLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPE 305
           +  +    P D     C        A T   +    ++     ++      L ++ V   
Sbjct: 12  ARGVLTSLPGDSVTLTCPGVEPEDNA-TVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLH 70

Query: 306 DEGVYVCTATNSLGT 320
           D G Y C        
Sbjct: 71  DSGNYSCYRAGRPAG 85

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 195 KLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVAS------- 246
           K  +KT  +G+   L  V+    P+P ++W K     + +  +    +   A        
Sbjct: 8   KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYF 67

Query: 247 LQIQEVFPEDEGVYVCTATNSLGTAETK 274
             + +    D   YVCTA N+    E  
Sbjct: 68  TIVTKEDVSDIYKYVCTAKNAAVDEEVV 95

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 2/78 (2%)

Query: 253 FPEDEGVYVCTATNSLGTAETKCKLTPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVC 312
           F   + +                +       +       NG   L+I+ +  +D G Y  
Sbjct: 20  FQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG--DLKIKNLTRDDSGTYNV 77

Query: 313 TATNSLGTAETKCKLTVR 330
           T  ++ GT      L +R
Sbjct: 78  TVYSTNGTRILNKALDLR 95

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 217 PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT 270
               V+  K        +       NG   L+I+ +  +D G Y  T  ++ GT
Sbjct: 34  GSTLVAEFKRKMKPFLKSGAFEILANG--DLKIKNLTRDDSGTYNVTVYSTNGT 85

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 13 KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 72
                ++ +  +   K       ++G   ++I +   +DSG Y     + +GT   N  
Sbjct: 34 GSTLVAEFKRKMKPFLKSGAFEILANG--DLKIKNLTRDDSGTYNVTVYSTNGTRILNKA 91

Query: 73 VIV 75
          + +
Sbjct: 92 LDL 94

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 8/101 (7%)

Query: 186 AMTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL------- 238
           AM      +   +  I +   + LS    G   PRV W  +          +        
Sbjct: 1   AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60

Query: 239 -KYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLT 278
            +       +  + V  ED G Y C  +   G +  + K+ 
Sbjct: 61  DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 7  VKVGST-------KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 59
           K G T       K      ++K    + K +       G  ++ I +    DSG Y+C+
Sbjct: 9  FKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCL 68

Query: 60 ATNKHGTDETNCVVIV 75
          +  +        VV  
Sbjct: 69 SEERVKNKTVFQVVAK 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.8
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.79
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.78
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.78
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.77
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.76
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.76
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.76
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.75
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.74
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.74
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.73
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.73
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.73
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.72
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.69
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.68
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.68
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.68
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.68
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.67
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.67
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.67
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.67
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.67
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.66
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.66
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.66
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.65
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.65
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.65
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.64
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.64
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.64
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.64
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.64
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.64
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.64
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.64
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.64
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.63
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.63
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.63
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.62
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.62
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.62
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.62
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.61
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.61
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.61
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.61
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.61
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.61
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.61
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.61
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.61
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.6
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.6
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.6
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.6
d2avga1	110	Cardiac myosin binding protein C, different domain	99.6
d2avga1	110	Cardiac myosin binding protein C, different domain	99.59
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.59
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.58
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.58
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.58
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.58
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.58
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.58
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.57
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.57
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.57
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.56
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.56
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.56
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.55
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.54
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.54
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.54
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.54
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.54
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.53
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.53
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.53
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.53
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.52
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.51
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.51
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.51
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.51
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.48
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.48
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.48
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.48
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.48
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.47
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.46
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.43
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.43
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.4
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.4
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.37
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.35
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.35
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.35
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.34
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.32
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.32
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.32
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.3
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.26
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.21
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.16
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.11
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.91
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.87
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.87
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.86
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.84
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.81
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.74
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.73
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.69
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.69
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.65
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.65
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.65
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.63
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.62
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.62
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.62
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.62
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.61
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.6
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.59
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.59
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.59
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.59
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.58
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.58
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.58
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.58
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.58
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.58
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.58
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.58
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.57
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.57
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.56
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.56
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.56
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.55
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.55
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.55
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.54
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.53
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.53
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.53
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.52
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.52
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.52
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.52
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.52
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.51
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.51
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.51
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.51
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.51
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.5
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.49
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.49
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.49
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.49
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.48
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.48
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.47
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.47
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.47
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.46
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.46
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.46
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.46
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.45
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.44
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.44
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.43
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.43
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.43
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.42
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.42
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.41
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.41
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.41
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.4
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.4
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.4
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.4
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.39
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.39
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.38
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.38
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.38
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.38
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.38
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.37
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.37
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.36
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.36
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.35
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.35
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.35
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.34
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.34
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.34
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.33
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.33
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.33
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.33
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.32
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.32
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.32
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.31
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.31
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.3
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.3
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.29
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.29
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.29
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.29
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.28
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.28
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.28
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.28
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.28
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.28
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.27
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.27
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.27
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.27
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.27
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.26
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.26
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.25
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.25
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.25
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.25
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.25
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.24
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.24
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.24
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.23
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.23
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.23
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.22
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.22
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.22
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.21
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.21
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.21
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.21
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.2
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.2
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.2
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.2
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.2
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.2
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.19
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.19
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.18
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.18
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.18
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.17
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.17
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.16
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.15
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.14
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.14
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.14
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.14
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.12
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.12
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.1
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.09
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.08
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.08
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.08
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.07
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.07
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.07
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.06
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.06
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.06
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.06
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.05
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.05
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.05
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.04
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.04
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.04
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.04
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	98.04
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.04
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.02
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.02
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.01
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.0
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	98.0
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.99
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.98
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.98
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.98
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.97
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.97
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.96
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.95
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.95
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.95
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.94
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.94
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.94
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.93
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.92
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.92
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.92
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.91
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.91
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.9
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.88
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.87
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.87
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.87
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.86
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.86
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.86
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.85
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.85
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.84
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.84
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.84
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.84
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.83
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.83
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.83
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.83
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.82
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.81
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.8
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.8
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.79
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.79
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.79
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.79
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.78
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.78
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.78
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.77
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.77
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.76
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.76
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.76
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.76
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.75
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.75
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.75
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.75
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.74
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.74
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.74
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.73
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.73
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.72
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.71
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.69
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.69
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.69
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.69
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.69
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.69
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.68
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.68
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.67
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.67
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.67
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.66
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.65
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.65
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.64
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.64
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.64
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.64
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.63
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.63
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.63
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.63
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.61
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.61
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.61
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.6
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.6
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.6
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.59
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.59
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.59
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.59
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.59
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.59
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.58
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.58
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.58
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.58
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.57
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.57
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.57
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.55
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.55
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.55
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.53
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.53
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.53
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.52
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.51
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.51
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.51
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.51
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.5
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.5
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.5
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.49
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.49
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.49
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.49
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.49
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.48
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.47
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.47
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.47
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.45
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.45
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.45
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.43
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.41

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.80  E-value=1.8e-19  Score=120.47  Aligned_cols=90  Identities=21%  Similarity=0.306  Sum_probs=83.6

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      +|.|...+.++.+.+|+++.|.|.+.|+|.|.+.|+++|..+....++........+.|.|.+++.+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            57777778889999999999999999999999999999999988888888888888999999999999999999999999


Q ss_pred             CceEEEEEEe
Q psy12422        269 GTAETKCKLT  278 (356)
Q Consensus       269 g~~~~~~~l~  278 (356)
                      |....++.|.
T Consensus        82 G~~~~~~~l~   91 (93)
T d1wiua_          82 GEDEAIFEVI   91 (93)
T ss_dssp             EEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            9999988875

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.79  E-value=1.7e-19  Score=121.61  Aligned_cols=90  Identities=29%  Similarity=0.416  Sum_probs=82.3

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |.|...+.++.+.+|+++.|.|.+.|+|.|.|.|++||..+..+.++.+...++...|.|.+++.+|+|.|+|.|.|..|
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   81 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG   81 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCC
Confidence            67778888889999999999999999999999999999999988877777778888999999999999999999999999


Q ss_pred             ceEEEEEEec
Q psy12422        270 TAETKCKLTP  279 (356)
Q Consensus       270 ~~~~~~~l~p  279 (356)
                      ....++.|.+
T Consensus        82 ~~~~~~~l~V   91 (97)
T d1koaa1          82 TKEEIVFLNV   91 (97)
T ss_dssp             EEEEEECCEE
T ss_pred             EEEEEEEEEE
Confidence            9888887764

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.8e-19  Score=119.50  Aligned_cols=91  Identities=22%  Similarity=0.369  Sum_probs=82.4

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+....++.+....+.++|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            45566677889999999999999999999999999999999988888888888888999999999999999999999999


Q ss_pred             ceEEEEEEecC
Q psy12422        270 TAETKCKLTPL  280 (356)
Q Consensus       270 ~~~~~~~l~p~  280 (356)
                      ....++.|...
T Consensus        81 ~~~~~~~l~V~   91 (101)
T d2cqva1          81 SRQAQVNLTVV   91 (101)
T ss_dssp             EEECCEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            99988888743

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.78  E-value=8.5e-19  Score=118.35  Aligned_cols=92  Identities=24%  Similarity=0.408  Sum_probs=81.5

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeE-EEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDL-KYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      .+|.|...+.+..+.+|+.+.|.|.+.|+|.|.+.|++||..+....+... ...++.++|.|.+++.+|+|.|+|.|.|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            457888888889999999999999999999999999999999988766544 4456778999999999999999999999


Q ss_pred             CCCceEEEEEEec
Q psy12422        267 SLGTAETKCKLTP  279 (356)
Q Consensus       267 ~~g~~~~~~~l~p  279 (356)
                      ..|....++.|.+
T Consensus        83 ~~G~~~~~~~L~V   95 (98)
T d1g1ca_          83 IAGETSSHAFLLV   95 (98)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            9999988888764

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.78  E-value=1e-18  Score=118.86  Aligned_cols=93  Identities=32%  Similarity=0.616  Sum_probs=83.2

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEe-CCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK-NGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|++||..+..+.++.+... .+..+|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (102)
T d1fhga_           6 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV   85 (102)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence            4568888888899999999999999999999999999999999998887776554 457889999999999999999999


Q ss_pred             cCCCceEEEEEEec
Q psy12422        266 NSLGTAETKCKLTP  279 (356)
Q Consensus       266 n~~g~~~~~~~l~p  279 (356)
                      |..|....++.|.+
T Consensus        86 N~~G~~~~~~~L~V   99 (102)
T d1fhga_          86 NSLGEATCTAELLV   99 (102)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCcEEEEEEEEEE
Confidence            99999999888763

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9e-19  Score=118.88  Aligned_cols=82  Identities=17%  Similarity=0.287  Sum_probs=73.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      |+++.|.|.+.|.|.|.|+|+|||+.+... ++.+...++..+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+.+
T Consensus        15 G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P   94 (101)
T d2cqva1          15 GESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP   94 (101)
T ss_dssp             TCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSC
T ss_pred             CCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecC
Confidence            799999999999999999999999999754 5666677777899999999999999999999999999999999999876


Q ss_pred             cch
Q psy12422         80 ESK   82 (356)
Q Consensus        80 ~~~   82 (356)
                      .++
T Consensus        95 ~pP   97 (101)
T d2cqva1          95 DPP   97 (101)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            543

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.77  E-value=8.5e-19  Score=115.69  Aligned_cols=86  Identities=37%  Similarity=0.684  Sum_probs=76.4

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |.|...+.+..+.+|+++.|.|.+.|.|.|.++|++||..+....++.+  ..+  .|.|.+++.+|+|.|+|.|.|..|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~--~~~--~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV--SGG--ELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE--ETT--EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeee--eee--eEEEEeecccCCEEEEEEEEeCCC
Confidence            6677788889999999999999999999999999999999988776544  344  799999999999999999999999


Q ss_pred             ceEEEEEEec
Q psy12422        270 TAETKCKLTP  279 (356)
Q Consensus       270 ~~~~~~~l~p  279 (356)
                      ....++.|.+
T Consensus        78 ~~~~~~~l~V   87 (89)
T d1cs6a4          78 TVYASAELTV   87 (89)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9888887753

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.76  E-value=5.4e-19  Score=117.48  Aligned_cols=88  Identities=28%  Similarity=0.440  Sum_probs=78.9

Q ss_pred             ecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      |...|.++.+.+|+++.|.|.+.|+|.|.+.|++||..+....+..+......+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   81 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence            34456778999999999999999999999999999999988888777777888999999999999999999999999998


Q ss_pred             EEEEEEec
Q psy12422        272 ETKCKLTP  279 (356)
Q Consensus       272 ~~~~~l~p  279 (356)
                      ..++.|.+
T Consensus        82 ~~~~~l~V   89 (91)
T d1tnna_          82 EAEFTLTI   89 (91)
T ss_dssp             CEEEEEEC
T ss_pred             EEEEEEEE
Confidence            88887753

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.76  E-value=3.5e-18  Score=115.26  Aligned_cols=77  Identities=25%  Similarity=0.348  Sum_probs=68.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC--eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.|+|||||.+|..+.  +.....++..+|+|.+++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus        19 g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          19 GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             TSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEEE
Confidence            7899999999999999999999999997653  2234456778999999999999999999999999999999999864

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=1e-18  Score=117.67  Aligned_cols=78  Identities=29%  Similarity=0.390  Sum_probs=70.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |+++.|.|.+.|.|.|.|+|+|||+.|..+ ++.+...++...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...
T Consensus        16 G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~   94 (97)
T d1koaa1          16 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH   94 (97)
T ss_dssp             TSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEECS
T ss_pred             CCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEeec
Confidence            789999999999999999999999999754 455556677789999999999999999999999999999999998754

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.75  E-value=3.6e-18  Score=112.63  Aligned_cols=73  Identities=33%  Similarity=0.521  Sum_probs=64.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.|+|+|||.++..+.+. ...++  .|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.
T Consensus        16 G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~-~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          16 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI-EVSGG--ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             TCCEEEECEEEEESCCEEEEEETTEECCCCSSE-EEETT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEcCCEEEEEEeecccccccee-eeeee--eEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence            789999999999999999999999999866532 33344  79999999999999999999999999999999885

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.74  E-value=7.5e-18  Score=111.13  Aligned_cols=71  Identities=31%  Similarity=0.423  Sum_probs=63.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.|+|+|||.++...++.+  .++  .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        18 G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~--~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          18 GQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATV--TDS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             TSCEEEECEEEEESCCCCEEEETTEECCSSSEEE--ETT--EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCeEEEEEEEEEeCCCEEEEEeCCccCccccEEE--eee--eEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            7899999999999999999999999998765433  233  5999999999999999999999999998888876

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.74  E-value=1e-17  Score=113.80  Aligned_cols=76  Identities=21%  Similarity=0.382  Sum_probs=67.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-eeEE-ecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.|.|||||.+|..+. +.+. ..++..+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus        23 G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          23 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             TSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEEE
Confidence            7899999999999999999999999998653 4443 35567899999999999999999999999999999999886

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=4.3e-18  Score=113.63  Aligned_cols=76  Identities=25%  Similarity=0.253  Sum_probs=68.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.++|+|||..+..+ ++.....++...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|+
T Consensus        17 G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          17 GFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             SBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEEEEEC
Confidence            789999999999999999999999988754 4556677777899999999999999999999999999999998874

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=9.2e-18  Score=113.69  Aligned_cols=77  Identities=27%  Similarity=0.424  Sum_probs=66.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.|+|+|||.++...   .......++..+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus        20 G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          20 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             CCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            799999999999999999999999999643   12233344456899999999999999999999999999999998864

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.73  E-value=3e-18  Score=115.25  Aligned_cols=76  Identities=22%  Similarity=0.359  Sum_probs=64.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC--eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.|+|||||+++....  ......++..+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus        20 G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Vl   97 (97)
T d3dara1          20 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV   97 (97)
T ss_dssp             TCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            7899999999999999999999999997532  122233344589999999999999999999999999999998873

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.73  E-value=2.9e-18  Score=113.91  Aligned_cols=76  Identities=21%  Similarity=0.348  Sum_probs=68.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.|.|+|||.++..+ ++.+...+...+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        14 G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          14 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             SSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEECC
T ss_pred             CCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEEE
Confidence            789999999999999999999999998754 4556677777899999999999999999999999999998888875

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.72  E-value=1.7e-17  Score=109.36  Aligned_cols=85  Identities=28%  Similarity=0.491  Sum_probs=70.7

Q ss_pred             CCeecccC-CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        189 PPQFANKL-TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       189 ~p~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      +|.|...+ ..+.+.+|+++.|.|.+.|.|.|.+.|+++|..+... +..  ...+  .|.|.+++.+|+|.|+|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~--~~~~--~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RAT--VTDS--GLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEE--EETT--EEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEE--Eeee--eEEECCCChhhCEEEEEEEEEC
Confidence            35565554 4567899999999999999999999999999999654 332  2333  6999999999999999999999


Q ss_pred             CCceEEEEEEe
Q psy12422        268 LGTAETKCKLT  278 (356)
Q Consensus       268 ~g~~~~~~~l~  278 (356)
                      .|....++.|.
T Consensus        77 ~G~~~~~~~l~   87 (89)
T d1biha4          77 HGDKYFETLVQ   87 (89)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CCEEEEEEEEE
Confidence            99988888775

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2e-17  Score=112.03  Aligned_cols=92  Identities=30%  Similarity=0.564  Sum_probs=73.2

Q ss_pred             CCeecccCC--ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCc--eeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        189 PPQFANKLT--DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI--LDLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       189 ~p~~~~~~~--~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ||.+...+.  +.++..|+++.|.|.+.|+|.|.+.|+++|..+.....  .........++|.|.+++.+|+|.|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            466655443  45678899999999999999999999999999875432  22233444568999999999999999999


Q ss_pred             EcCCCceEEEEEEecC
Q psy12422        265 TNSLGTAETKCKLTPL  280 (356)
Q Consensus       265 ~n~~g~~~~~~~l~p~  280 (356)
                      .|..|.....+.|.+.
T Consensus        83 ~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVF   98 (100)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEEE
Confidence            9999999988887643

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.69  E-value=1.7e-17  Score=111.49  Aligned_cols=82  Identities=24%  Similarity=0.502  Sum_probs=68.8

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee-EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD-LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ...+.+|+++.|.|.+.|+|.|.|.|++||..+....... .....+.++|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   93 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   93 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            3578899999999999999999999999999997654322 223334458999999999999999999999999998888


Q ss_pred             Eec
Q psy12422        277 LTP  279 (356)
Q Consensus       277 l~p  279 (356)
                      |.+
T Consensus        94 l~V   96 (97)
T d3dara1          94 LDV   96 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            753

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=5.1e-17  Score=107.85  Aligned_cols=87  Identities=18%  Similarity=0.250  Sum_probs=72.4

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      +.|...|.++.+.+|+.+.|.|.+.|.|.|.+.|+++|..+.......+....+ ++|.|.+++.+|+|.|+|.|.|..+
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEEECcC
Confidence            456677888999999999999999999999999999999988766544443332 3699999999999999999999888


Q ss_pred             ceEEEEEE
Q psy12422        270 TAETKCKL  277 (356)
Q Consensus       270 ~~~~~~~l  277 (356)
                      .......+
T Consensus        81 ~~~~~~~i   88 (92)
T d1epfa2          81 GEINFKDI   88 (92)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            76655544

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-16  Score=105.94  Aligned_cols=74  Identities=12%  Similarity=0.089  Sum_probs=64.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.++|++++..+....  .........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus        16 G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          16 GDSVSLTCSTTGCESPFFSWRTQIDSPLNGK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             TSCEEEEEEEESCSSCEEEEEETTCCCCSSE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEEEeccCCCCceEEEEecCccceeee--eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            7999999999999999999999887665432  3344555689999999999999999999999999999998885

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.2e-17  Score=106.17  Aligned_cols=69  Identities=13%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      |++++|.|.+.|.|+|.|+|++++..+..       .+.  .|+|.+++.+|+|.|+|.|.|..|.....+.|.|...
T Consensus        14 G~~~~L~C~~~g~p~P~i~W~~~~~~~~~-------~~~--~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~   82 (84)
T d2nxyb2          14 GQSLTLTLESPPGSSPSVQCRSPRGKNIQ-------GGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF   82 (84)
T ss_dssp             TCCEEEEEECCTTCCCEEEEECTTCCEEE-------ESS--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECC
T ss_pred             CCeEEEEEEeEcCCchheEEEeeccccee-------eee--eeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEec
Confidence            89999999999999999999997664422       222  7899999999999999999999999999999988754

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.9e-16  Score=105.88  Aligned_cols=91  Identities=22%  Similarity=0.364  Sum_probs=75.3

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEcc------CCCceeEEEeCCEEEEEEccCC-CCCCeE
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLN------SSNILDLKYKNGVASLQIQEVF-PEDEGV  259 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~------~~~~~~~~~~~~~~~L~i~~v~-~~d~G~  259 (356)
                      .||.|...+....+.+|+.+.|.|.+.|+|+| .+.|++++....      ...++.+......+.|.|.++. .+|+|.
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            37888888888999999999999999999988 699999653322      1234556667778899999998 479999


Q ss_pred             EEEEEEcCCCceEEEEEEe
Q psy12422        260 YVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       260 Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+|.|.|..|.....+.|.
T Consensus        81 Y~C~A~N~~G~~~~~~~L~   99 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLR   99 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEE
Confidence            9999999999999888775

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.67  E-value=7.2e-17  Score=108.36  Aligned_cols=76  Identities=14%  Similarity=0.230  Sum_probs=62.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeE--EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSM--SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.|.|||||+.+... ...+  .......+|.|.+++.+|+|.|+|.|.|..|... .++.|.|.
T Consensus        18 G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          18 GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             TSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             CCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            799999999999999999999999999643 2222  2333445899999999999999999999999864 46778763

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=5.8e-17  Score=107.40  Aligned_cols=71  Identities=27%  Similarity=0.379  Sum_probs=59.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |++++|.|.+.|.|.|.|+|+|++......   ....++  .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        20 G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~---~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          20 GQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEP--LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             TCCEEEECEEEEESCCEEEEEECCSCCSCC---CSBSSS--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEccCCEEEEEecccccceE---eeeeee--EEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            799999999999999999999976544322   112233  79999999999999999999999999999988885

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.7e-16  Score=105.35  Aligned_cols=96  Identities=23%  Similarity=0.299  Sum_probs=76.4

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEe---C--CEEEEEEccCCCCCCeEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK---N--GVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~---~--~~~~L~i~~v~~~d~G~Y~  261 (356)
                      ..||.+.....   ...+..+.|.|.+.|+|.|.|.|++||..+..+....+...   .  ..+.|.|.+++.+|+|.|+
T Consensus         2 ~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (103)
T d1wwbx_           2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             ccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEE
Confidence            45666643322   23577788999999999999999999999987765544322   1  2367999999999999999


Q ss_pred             EEEEcCCCceEEEEEEecCCCCcc
Q psy12422        262 CTATNSLGTAETKCKLTPLNSSNI  285 (356)
Q Consensus       262 C~a~n~~g~~~~~~~l~p~~~~~~  285 (356)
                      |.|.|..|.+.+++.|.....|.+
T Consensus        79 C~a~N~~G~~~~~~~v~V~~~P~i  102 (103)
T d1wwbx_          79 LIAKNEYGKDEKQISAHFMGWPGI  102 (103)
T ss_dssp             EEEECSSCEEEEEEEECCSCCCCC
T ss_pred             EEEeccCCEEEEEEEEEEEeCCCC
Confidence            999999999999999987777654

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.3e-17  Score=106.88  Aligned_cols=76  Identities=17%  Similarity=0.225  Sum_probs=62.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-eeEEe--cCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.|.+.|+|||.++.... ..+..  ......|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        11 G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          11 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             TCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             CCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            7999999999999999999999999997553 22322  2334589999999999999999999999976 456888775

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=4.3e-17  Score=108.06  Aligned_cols=85  Identities=28%  Similarity=0.377  Sum_probs=68.2

Q ss_pred             CCeecc-cCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        189 PPQFAN-KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       189 ~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      +|.+.. .+.++.+.+|+.+.|.|.+.|+|.|.+.|++++.......    ..  ....|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~----~~--~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW----LS--SEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC----SB--SSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe----ee--eeeEEEeCCCCccCCEEEEEEEEEC
Confidence            455554 3678899999999999999999999999999765443211    11  2238999999999999999999999


Q ss_pred             CCceEEEEEEec
Q psy12422        268 LGTAETKCKLTP  279 (356)
Q Consensus       268 ~g~~~~~~~l~p  279 (356)
                      .|....++.|.+
T Consensus        78 ~G~~~~~~~l~V   89 (91)
T d1cs6a3          78 KGRDTYQGRIII   89 (91)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999888877753

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.4e-16  Score=103.85  Aligned_cols=83  Identities=25%  Similarity=0.402  Sum_probs=69.5

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCC--EEEEEEccCCCCCCeEEEEEEEcCCCceE-
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNG--VASLQIQEVFPEDEGVYVCTATNSLGTAE-  272 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-  272 (356)
                      |.++++.+|+.+.|.|.+.|.|.|.+.|+|+|..+.......+.....  ...|.|.+++.+|+|.|+|.|.|..|... 
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            567889999999999999999999999999999998776655554443  46799999999999999999999999754 


Q ss_pred             EEEEEe
Q psy12422        273 TKCKLT  278 (356)
Q Consensus       273 ~~~~l~  278 (356)
                      ..+.|.
T Consensus        83 ~~~~l~   88 (91)
T d1rhfa1          83 QPVWLT   88 (91)
T ss_dssp             CCEEEE
T ss_pred             EEEEEE
Confidence            345443

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.9e-18  Score=111.50  Aligned_cols=88  Identities=17%  Similarity=0.246  Sum_probs=73.9

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCe-EEEEEEEcC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEG-VYVCTATNS  267 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~  267 (356)
                      .|.|...+.+.++.+|+.+.|.|.+.|.|.|.+.|++++..+.....  .........|.|.+++.+|.| .|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEcC
Confidence            47788888888999999999999999999999999999877654322  223445678999999999999 799999999


Q ss_pred             CCceEEEEEEe
Q psy12422        268 LGTAETKCKLT  278 (356)
Q Consensus       268 ~g~~~~~~~l~  278 (356)
                      .|.+..++.|.
T Consensus        80 ~G~~~~s~~l~   90 (92)
T d2ifga1          80 VGRAEVSVQVN   90 (92)
T ss_dssp             TEECCEEECCC
T ss_pred             CCEEEEEEEEE
Confidence            99998887764

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-16  Score=104.01  Aligned_cols=76  Identities=20%  Similarity=0.256  Sum_probs=64.2

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      +..+.+|++++|.|.+.|.|+|.+.|++++..+..        ...  .|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~--------~~~--~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v   77 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ--------GGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI   77 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE--------ESS--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeeccccee--------eee--eeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence            34688999999999999999999999997654322        222  79999999999999999999999999999988


Q ss_pred             ecCCCC
Q psy12422        278 TPLNSS  283 (356)
Q Consensus       278 ~p~~~~  283 (356)
                      .+...+
T Consensus        78 ~V~~~~   83 (84)
T d2nxyb2          78 VVLAFQ   83 (84)
T ss_dssp             CEECCC
T ss_pred             EEEecC
Confidence            765543

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=3e-16  Score=103.67  Aligned_cols=72  Identities=19%  Similarity=0.331  Sum_probs=61.8

Q ss_pred             CCceEEEEEec-cCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGS-TKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+. +.|.|.|+|+|+|..+...+.  ...++  .|+|.+++.+|+|.|+|.|.|..|.++..+.|.|.
T Consensus        17 G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          17 GADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             TCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--EEETT--EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CCcEEEEEEccCCCCCCEEEEecCCceeecccc--Eeece--EEEEecCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            79999999995 788899999999888765542  23344  79999999999999999999999999999988874

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.5e-16  Score=102.29  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=66.8

Q ss_pred             ecccCCceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      +..++....+.+|+++.|.|.+ .|.|.|.|+|++++..+..     .......+.|.|.+++.+|+|.|+|+|.|..|.
T Consensus         6 i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~   80 (90)
T d1gsma1           6 VEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT   80 (90)
T ss_dssp             EESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             EeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEEeCCCc
Confidence            3333456788999999999988 4899999999987765521     233456679999999999999999999999999


Q ss_pred             eEEEEEEe
Q psy12422        271 AETKCKLT  278 (356)
Q Consensus       271 ~~~~~~l~  278 (356)
                      .+.++.|.
T Consensus        81 ~~~s~~l~   88 (90)
T d1gsma1          81 FQHTVQLL   88 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            98888875

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.5e-16  Score=111.09  Aligned_cols=84  Identities=24%  Similarity=0.386  Sum_probs=70.8

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC-----------------------------CceeEEEeCCEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-----------------------------NILDLKYKNGVAS  246 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-----------------------------~~~~~~~~~~~~~  246 (356)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...                             .++.+......++
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   95 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI   95 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEE
Confidence            46788999999999999999999999999977665321                             1234455566789


Q ss_pred             EEEccCCCCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422        247 LQIQEVFPEDEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       247 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      |.|.+++.+|+|.|+|.|.|..|.+.+++.|.+
T Consensus        96 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_          96 FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             EECSCCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEECcCChhcCEEEEEEEEECCCEEEEEEEEEE
Confidence            999999999999999999999999999888864

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.2e-16  Score=102.42  Aligned_cols=72  Identities=13%  Similarity=0.126  Sum_probs=61.7

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+ .|.|.|.|+|++++.++..    ....++...|+|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus        18 G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          18 GASRQLTCRLACADRGASVQWRGLDTSLGA----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             TCCEEEEEEECCSSTTCEEEEESSTTTTCC----EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEecCCCCccEEEEEEeeeeeee----eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEEC
Confidence            8999999988 5899999999998877642    2344556689999999999999999999999999999998874

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5e-16  Score=100.89  Aligned_cols=74  Identities=20%  Similarity=0.346  Sum_probs=62.3

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      |.|...|.+..+.+|+++.|.|.+.|+|.| .|+|+|||..+.....         ..+.|.....+|+|.|+|.|.|..
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~---------~~~~l~~~~~~d~G~Y~C~A~N~~   72 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------SPSVLNVTGVTQSTMFSCEAHNLK   72 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------SSEEEEECCCSSCEEEEEEEEETT
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC---------cceEEecCCccccEEEEEEEEcCC
Confidence            677888888999999999999999999988 8999999998875421         135666777789999999999999


Q ss_pred             CceE
Q psy12422        269 GTAE  272 (356)
Q Consensus       269 g~~~  272 (356)
                      |...
T Consensus        73 G~~~   76 (85)
T d1rhfa2          73 GLAS   76 (85)
T ss_dssp             EEEE
T ss_pred             CcEE
Confidence            9643

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1e-16  Score=106.34  Aligned_cols=73  Identities=21%  Similarity=0.303  Sum_probs=59.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-Ce-eEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DY-SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.++|||+|+.+... .. .....++  +|.|.+++.+|+|.|+|.|.|..+.......+.|
T Consensus        16 G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~V   90 (92)
T d1epfa2          16 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV   90 (92)
T ss_dssp             TSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeee--eEEECCCCHHhCEEEEEEEEECcCCEEEEEEEEE
Confidence            789999999999999999999999998753 22 2233333  6999999999999999999998777766666655

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.1e-16  Score=101.58  Aligned_cols=78  Identities=19%  Similarity=0.270  Sum_probs=66.1

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKL  277 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  277 (356)
                      ...+.+|+++.|.|.+.|.|+|.+.|++++..+....   .......++|.|.+++.+|+|.|+|+|.|..|....++.|
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v   86 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEE
Confidence            4567789999999999999999999999776654332   2344566799999999999999999999999999988887


Q ss_pred             e
Q psy12422        278 T  278 (356)
Q Consensus       278 ~  278 (356)
                      .
T Consensus        87 ~   87 (90)
T d1vcaa2          87 E   87 (90)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.64  E-value=5.7e-16  Score=106.74  Aligned_cols=92  Identities=26%  Similarity=0.365  Sum_probs=68.8

Q ss_pred             CCCeeccc-CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC----CCceeEE---------EeCCEEEEEEccCC
Q psy12422        188 TPPQFANK-LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS----SNILDLK---------YKNGVASLQIQEVF  253 (356)
Q Consensus       188 ~~p~~~~~-~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~----~~~~~~~---------~~~~~~~L~i~~v~  253 (356)
                      .+|.|... |.++++.+|+++.|.|.+.|.|.|.|.|++++.....    .......         .....+.|.|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            45666654 6889999999999999999999999999986543221    1111111         11224689999999


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEec
Q psy12422        254 PEDEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       254 ~~d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      .+|+|.|+|.|.|..|.+.+++.|.+
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999999999888863

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.1e-16  Score=105.64  Aligned_cols=78  Identities=14%  Similarity=0.228  Sum_probs=64.5

Q ss_pred             CceEEEEEeccCCCCeeEEeeCCEEcccCC-eeEEe-----cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          2 QNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSY-----SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         2 ~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      +.+.|.|.+.|+|.|.|+|+|||++|..+. ..+..     ......|.|.+++.+|+|.|+|.|+|..|.++..+.|.|
T Consensus        17 ~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V   96 (103)
T d1wwbx_          17 HHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF   96 (103)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECC
T ss_pred             eeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEE
Confidence            456789999999999999999999997653 22211     122357999999999999999999999999999999998


Q ss_pred             eccc
Q psy12422         76 ESEE   79 (356)
Q Consensus        76 ~~~~   79 (356)
                      .+.|
T Consensus        97 ~~~P  100 (103)
T d1wwbx_          97 MGWP  100 (103)
T ss_dssp             SCCC
T ss_pred             EeCC
Confidence            7764

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.64  E-value=4.5e-16  Score=104.35  Aligned_cols=83  Identities=25%  Similarity=0.414  Sum_probs=68.1

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEE--EeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE-
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK--YKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE-  272 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-  272 (356)
                      +.+..+.+|+++.|.|.+.|+|.|.+.|+++|..+.......+.  .......|.|.+++.+|+|.|+|.|.|..|... 
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            35788999999999999999999999999999999765443332  223345899999999999999999999999865 


Q ss_pred             EEEEEe
Q psy12422        273 TKCKLT  278 (356)
Q Consensus       273 ~~~~l~  278 (356)
                      .++.|.
T Consensus        90 ~s~~L~   95 (97)
T d1biha3          90 HSLKLT   95 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            456664

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=8.6e-16  Score=101.43  Aligned_cols=79  Identities=25%  Similarity=0.411  Sum_probs=66.4

Q ss_pred             cCCceeecCCCeEEEEEEEc-CCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVK-GDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      .+....+.+|+++.|.|.+. +.|.|.+.|+|++..+.....   ....+  .|+|.+++.+|+|.|+|.|.|..|....
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~   82 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA---MDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQG   82 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE---EEETT--EEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc---Eeece--EEEEecCCcccCEEEEEEEEECCCEEEE
Confidence            45678899999999999996 788899999998877765432   22333  7999999999999999999999999988


Q ss_pred             EEEEe
Q psy12422        274 KCKLT  278 (356)
Q Consensus       274 ~~~l~  278 (356)
                      ++.|.
T Consensus        83 ~~~l~   87 (89)
T d1gl4b_          83 TATLH   87 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88775

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.5e-16  Score=111.71  Aligned_cols=77  Identities=23%  Similarity=0.254  Sum_probs=65.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC------------------------------CeeEEecCCeEEEEEeeCCC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR------------------------------DYSMSYSDGVVSMEIIDCKP   50 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~------------------------------~~~~~~~~~~~~L~i~~~~~   50 (356)
                      |++|+|.|.+.|.|.|.|.|+|++..+...                              ++.+....+..+|+|.+++.
T Consensus        24 G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (130)
T d1gxea_          24 GNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEK  103 (130)
T ss_dssp             SSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEEECSCCCT
T ss_pred             CCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEEEECcCCh
Confidence            799999999999999999999987655311                              12334555667899999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422         51 EDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus        51 ~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      +|+|.|+|.|.|..|.+.+.+.|.|.+
T Consensus       104 ~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_         104 EDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             TTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             hcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            999999999999999999999998864

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=1.7e-16  Score=106.03  Aligned_cols=83  Identities=22%  Similarity=0.379  Sum_probs=69.3

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .|.|...+.++.+.+|+.+.|.|.+.|.|.| .+.|++||..+....... ......++|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNA-ALRKDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTE-EECTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeeccee-eecccceEEEEeccChhcCeEEEEEEEeC
Confidence            4778888888999999999999999999976 699999999887554332 22333458999999999999999999999


Q ss_pred             CCceE
Q psy12422        268 LGTAE  272 (356)
Q Consensus       268 ~g~~~  272 (356)
                      .|...
T Consensus        81 ~G~~~   85 (94)
T d1biha1          81 AGVAS   85 (94)
T ss_dssp             TEEEE
T ss_pred             CCEEE
Confidence            99754

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3e-15  Score=101.92  Aligned_cols=94  Identities=28%  Similarity=0.437  Sum_probs=71.7

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEE--eCC--EEEEEEccCCCCCCeEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKY--KNG--VASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~--~~~--~~~L~i~~v~~~d~G~Y~C  262 (356)
                      ..||.+......   ..+....|.|.+.|+|.|.+.|++||..+..........  ...  .+.|.|.+++.+|+|.|+|
T Consensus         3 ~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (105)
T d1wwca_           3 YYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL   79 (105)
T ss_dssp             CCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred             EcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEE
Confidence            456666433221   234456688899999999999999999998776554432  222  3679999999999999999


Q ss_pred             EEEcCCCceEEEEEEecCCCC
Q psy12422        263 TATNSLGTAETKCKLTPLNSS  283 (356)
Q Consensus       263 ~a~n~~g~~~~~~~l~p~~~~  283 (356)
                      .|.|..|.+..++.+.....|
T Consensus        80 ~a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          80 IAKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             EEEETTEEEEEEEEECCSCCC
T ss_pred             EEEcCCCEEEEEEEEEEEeCC
Confidence            999999999999999855433

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=1.6e-16  Score=106.76  Aligned_cols=89  Identities=24%  Similarity=0.412  Sum_probs=72.3

Q ss_pred             CCCeecccCCceeecCC---CeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        188 TPPQFANKLTDKTIDDG---QCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      .+|.|...|.+..+.+|   +++.|.|.+.|.|.|.+.|++||..+............+ ..|.|..+..+|+|.|+|+|
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEEEEE
Confidence            46778888877777766   689999999999999999999999998765555554444 47889999999999999999


Q ss_pred             EcCCCceEE-EEEE
Q psy12422        265 TNSLGTAET-KCKL  277 (356)
Q Consensus       265 ~n~~g~~~~-~~~l  277 (356)
                      .|..|.... .+.|
T Consensus        82 ~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          82 TNARGTVVSREASL   95 (97)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             EECCCEEEEEEEEE
Confidence            999997643 4444

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.2e-16  Score=105.79  Aligned_cols=77  Identities=19%  Similarity=0.248  Sum_probs=62.5

Q ss_pred             eEEEEEeccCCCCeeEEeeCCEEcccCC-eeEEe--cC--CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEecc
Q psy12422          4 VIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSY--SD--GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE   78 (356)
Q Consensus         4 v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~--~~--~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~   78 (356)
                      ..|.|.+.|+|.|.++|||||+++..+. .....  ..  ....|.|.+++.+|+|.|+|.|.|..|.+++++.|.|.+.
T Consensus        20 ~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~   99 (105)
T d1wwca_          20 HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE   99 (105)
T ss_dssp             EEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred             EEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeC
Confidence            4477899999999999999999997543 22221  11  2357999999999999999999999999999999998765


Q ss_pred             cc
Q psy12422         79 EE   80 (356)
Q Consensus        79 ~~   80 (356)
                      |.
T Consensus       100 P~  101 (105)
T d1wwca_         100 PF  101 (105)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.8e-17  Score=106.28  Aligned_cols=72  Identities=19%  Similarity=0.248  Sum_probs=62.0

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      +.++++.+|+.+.|.|.+.|+|.|.++|+|+|..+....             .+.+++.+|+|.|+|+|.|..|.....+
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~   77 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTREV   77 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEcCCCEEEEEE
Confidence            467889999999999999999999999999987765432             3457889999999999999999998888


Q ss_pred             EEecC
Q psy12422        276 KLTPL  280 (356)
Q Consensus       276 ~l~p~  280 (356)
                      .|.+.
T Consensus        78 ~l~V~   82 (84)
T d2oz4a3          78 TVNVL   82 (84)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88643

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.1e-15  Score=100.91  Aligned_cols=77  Identities=21%  Similarity=0.324  Sum_probs=65.0

Q ss_pred             ecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCc--eeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI--LDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |..++.+..+.+|+++.|.|.+. .|.|.+.|+++|..+.....  +.+..+++.++|.|.+++.+|+|.|+|.|.|..+
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   81 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQS   81 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTEEE
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecceE
Confidence            34456788999999999999994 68899999999999876644  5566777888999999999999999999987544

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.6e-17  Score=105.24  Aligned_cols=65  Identities=20%  Similarity=0.168  Sum_probs=56.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |+++.|.|.+.|.|.|.|+|+|||..+...            +.+.+++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus        19 G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~------------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~   83 (84)
T d2oz4a3          19 NSQQTPMCQAWGNPLPELKCLKDGTFPLPI------------GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS   83 (84)
T ss_dssp             TCEECCCCCCEEESCCEEEEEETTTEECCT------------TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEeEcCccEEEEEEeeccceee------------eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEEC
Confidence            789999999999999999999998866432            22456789999999999999999999999998864

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.1e-15  Score=99.21  Aligned_cols=68  Identities=16%  Similarity=0.274  Sum_probs=54.6

Q ss_pred             CCceEEEEEeccCCCC-eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE-EEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~v~   76 (356)
                      |+++.|.|.+.|.|.| .|+|||||.++....      .+  .+.|..+..+|+|.|+|.|.|..|...+ .+.|.|+
T Consensus        16 G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~------~~--~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          16 NAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA------PS--PSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             TCCEEEEEEEECSSSCCEEEEEETTEECSCSE------ES--SEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CCEEEEEEEEecCCcceEEEEEECCEECCCCC------Cc--ceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEEC
Confidence            7899999999999988 899999999986532      11  3455666778999999999999997643 5777663

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2e-15  Score=100.99  Aligned_cols=89  Identities=22%  Similarity=0.409  Sum_probs=71.0

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      +|.+.  ..+..+.+|+++.|.|.+.+ |++.+.|+++|..+....+.......  .+|.|.+++.+|+|.|+|.|.|..
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~--~~L~I~~v~~~d~G~Y~C~a~N~~   79 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPV   79 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTT--TEEEECSCCGGGCEEEEEEEESSS
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCc--eEEEEeccchhhceEEEEEEEeCC
Confidence            45553  35678999999999999876 56889999999999888776654443  489999999999999999999999


Q ss_pred             CceEE-EEEEecCCC
Q psy12422        269 GTAET-KCKLTPLNS  282 (356)
Q Consensus       269 g~~~~-~~~l~p~~~  282 (356)
                      |.... .+.|.+...
T Consensus        80 g~~~S~~~~L~V~~~   94 (96)
T d1l6za2          80 SVRRSNSIKLDIIFD   94 (96)
T ss_dssp             CCEECCCCEEEECCS
T ss_pred             CCeEEEeEEEEEEcC
Confidence            98754 466665443

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.1e-15  Score=102.32  Aligned_cols=77  Identities=16%  Similarity=0.237  Sum_probs=61.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEeccc
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVESEE   79 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~~~   79 (356)
                      |++++|.|.+.+ |++.|.|||+|+.+.......... +..+|+|.+++.+|+|.|+|.|.|..|... ..+.|.|...|
T Consensus        18 g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~-~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          18 LDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ-NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             TSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEET-TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred             CCeEEEEEccCC-CCCCEEEEEeeeecccccceeccC-CceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence            789999999866 568999999999997654333222 223899999999999999999999998875 45888887653

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.61  E-value=2.8e-16  Score=104.92  Aligned_cols=69  Identities=13%  Similarity=0.250  Sum_probs=57.4

Q ss_pred             CCceEEEEEeccCCCC-eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |+++.|.|.+.|.|.| .|.|+|||+.+..............+|.|.+++.+|+|.|+|.|.|..|.+.+
T Consensus        17 g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s   86 (94)
T d1biha1          17 NNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASS   86 (94)
T ss_dssp             TSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEEE
Confidence            7899999999999876 69999999999765433433344448999999999999999999999997654

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.61  E-value=1.2e-16  Score=105.11  Aligned_cols=81  Identities=17%  Similarity=0.209  Sum_probs=71.3

Q ss_pred             ecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      |..++.+..+.+|+++.|.|.+ +.|.|.+.|++||..+..+.++.+..+++.++|.|.+++.+|+|.|+|.|.|..+.+
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~sa   82 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKSAA   82 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBCCE
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEEEE
Confidence            3445678899999999999998 579999999999999999999988888888999999999999999999998876654


Q ss_pred             EE
Q psy12422        272 ET  273 (356)
Q Consensus       272 ~~  273 (356)
                      ..
T Consensus        83 ~l   84 (89)
T d1tiua_          83 NL   84 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.9e-15  Score=101.41  Aligned_cols=76  Identities=24%  Similarity=0.427  Sum_probs=63.3

Q ss_pred             CCceEEEEEeccCCCC-eeEEeeCCEEcc-------cCCeeEEecCCeEEEEEeeCC-CCCCeEEEEEEEeCCceeEEEE
Q psy12422          1 MQNVIKVKVGSTKPPP-TVKWYKGNRELS-------KRDYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDETNC   71 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~-------~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~~~~   71 (356)
                      |+++.|.|.+.|.|+| .++|||++....       ..++.+........|.|.++. .+|+|.|+|.|.|..|..+..+
T Consensus        17 G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~   96 (101)
T d3b5ha1          17 GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAII   96 (101)
T ss_dssp             TSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEEE
Confidence            7899999999999988 699999764332       124556667777899999998 5799999999999999999999


Q ss_pred             EEEEe
Q psy12422         72 VVIVE   76 (356)
Q Consensus        72 ~l~v~   76 (356)
                      .|.|.
T Consensus        97 ~L~Vr  101 (101)
T d3b5ha1          97 TLRVR  101 (101)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            98874

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-16  Score=106.36  Aligned_cols=74  Identities=16%  Similarity=0.116  Sum_probs=62.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCe-EEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.|+|+|+|.++..... .....+...|.|.+++.+|.| .|+|.|.|..|.+..++.|.|
T Consensus        17 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          17 GDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             TCCEEEEEEEECSSCCCCCEEESCCCSSEEEC-CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCC
T ss_pred             CCEEEEeeeccCCCCcEEEEEECCceeeeeee-eeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            78999999999999999999999987754321 223455568999999999999 799999999999988887765

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=5.7e-15  Score=98.98  Aligned_cols=86  Identities=23%  Similarity=0.386  Sum_probs=66.7

Q ss_pred             cccCCceeecCCCeEEEEEEEcCCCC-CeEEEEE-CCEEccC-CCceeE-EEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        193 ANKLTDKTIDDGQCLDLSAVVKGDPE-PRVSWTK-NGQPLNS-SNILDL-KYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       193 ~~~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~-~g~~~~~-~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      .+.|....+.+|+++.|.|.+.|.|+ |.|.|++ +|..+.. ..++.. ......++|.|.+++.+|+|.|+|.|.|..
T Consensus         4 ~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   83 (97)
T d1epfa1           4 DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED   83 (97)
T ss_dssp             EEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCC
Confidence            34456678999999999999999985 7899999 5555543 334433 334567899999999999999999999999


Q ss_pred             Cce-EEEEEEe
Q psy12422        269 GTA-ETKCKLT  278 (356)
Q Consensus       269 g~~-~~~~~l~  278 (356)
                      |.. ++++.|.
T Consensus        84 G~~~~~tv~l~   94 (97)
T d1epfa1          84 GTQSEATVNVK   94 (97)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CcEEEEEEEEE
Confidence            964 3556554

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.1e-15  Score=100.27  Aligned_cols=82  Identities=22%  Similarity=0.387  Sum_probs=67.0

Q ss_pred             CCCeecccC-CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        188 TPPQFANKL-TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       188 ~~p~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      .+|.|...+ ....+.+|+.+.|.|.+. .|+|.+.|++||..+... ..+.+...++.++|.|.++..+|+|.|+|.|.
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            445555554 345799999999999995 599999999999998764 45667777888999999999999999999997


Q ss_pred             cCCCc
Q psy12422        266 NSLGT  270 (356)
Q Consensus       266 n~~g~  270 (356)
                      |..+.
T Consensus        83 n~~~s   87 (94)
T d1pd6a_          83 GEKCS   87 (94)
T ss_dssp             TEEEC
T ss_pred             eEEEE
Confidence            75443

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.1e-15  Score=101.98  Aligned_cols=86  Identities=19%  Similarity=0.330  Sum_probs=68.1

Q ss_pred             ceeecCCCeEEEE---EEEcCCCCCeEEEEECCEEccCCCceeEEEeC-------CEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        198 DKTIDDGQCLDLS---AVVKGDPEPRVSWTKNGQPLNSSNILDLKYKN-------GVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       198 ~~~v~~g~~~~l~---C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      ++.+..|..+.+.   |.+.|+|.|.+.|++||..+............       ..+.|.|.++..+|+|.|+|.|.|.
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~   85 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence            3445556665555   58899999999999999999877655444322       2367999999999999999999999


Q ss_pred             CCceEEEEEEecCCCC
Q psy12422        268 LGTAETKCKLTPLNSS  283 (356)
Q Consensus       268 ~g~~~~~~~l~p~~~~  283 (356)
                      .|.+.+++.|....+|
T Consensus        86 ~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          86 FGQASASIMAAFMDNP  101 (107)
T ss_dssp             TEEEEEEEEECCCSCT
T ss_pred             CCEEEEEEEEEEEcCC
Confidence            9999999999865544

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=3.8e-15  Score=99.83  Aligned_cols=76  Identities=22%  Similarity=0.373  Sum_probs=60.2

Q ss_pred             CCceEEEEEeccCCC-CeeEEee-CCEEcccC--CeeE-EecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-EEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPP-PTVKWYK-GNRELSKR--DYSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-~~v~W~k-~g~~l~~~--~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~   74 (356)
                      |+++.|.|.+.|.|+ |.|.||| +|..+...  ++.. ...++..+|.|.+++.+|+|.|+|.|.|..|.. ++++.|.
T Consensus        15 G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~   94 (97)
T d1epfa1          15 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK   94 (97)
T ss_dssp             TCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEE
Confidence            899999999999985 7999999 56665432  3333 344566799999999999999999999999875 4567777


Q ss_pred             Ee
Q psy12422         75 VE   76 (356)
Q Consensus        75 v~   76 (356)
                      |.
T Consensus        95 V~   96 (97)
T d1epfa1          95 IF   96 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.8e-15  Score=102.20  Aligned_cols=79  Identities=11%  Similarity=0.209  Sum_probs=62.6

Q ss_pred             CceEEE---EEeccCCCCeeEEeeCCEEcccCC-eeEEecC-------CeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          2 QNVIKV---KVGSTKPPPTVKWYKGNRELSKRD-YSMSYSD-------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         2 ~~v~l~---C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~~~-------~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      ..+.+.   |.+.|.|.|.++|+|||++|..+. ......+       ....|.|.+++.+|+|.|+|.|.|..|.+.+.
T Consensus        13 ~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~   92 (107)
T d1he7a_          13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (107)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEE
Confidence            344544   588999999999999999997543 2222211       23579999999999999999999999999999


Q ss_pred             EEEEEecccc
Q psy12422         71 CVVIVESEEE   80 (356)
Q Consensus        71 ~~l~v~~~~~   80 (356)
                      +.|.|.++|.
T Consensus        93 i~v~v~~~P~  102 (107)
T d1he7a_          93 IMAAFMDNPF  102 (107)
T ss_dssp             EEECCCSCTT
T ss_pred             EEEEEEcCCC
Confidence            9999887653

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.60  E-value=2.1e-15  Score=103.87  Aligned_cols=76  Identities=21%  Similarity=0.223  Sum_probs=58.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc----C-C---------eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK----R-D---------YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~----~-~---------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      |+++.|.|.+.|.|.|.|.|+|++.....    . .         .......+...|.|.+++.+|+|.|+|.|.|..|.
T Consensus        20 G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~   99 (109)
T d2fdbp2          20 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI   99 (109)
T ss_dssp             TCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEECCCE
Confidence            79999999999999999999997654321    0 0         00111223468999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy12422         67 DETNCVVIVE   76 (356)
Q Consensus        67 ~~~~~~l~v~   76 (356)
                      +.+++.|.|.
T Consensus       100 ~~~~~~L~Vl  109 (109)
T d2fdbp2         100 SFHSAWLTVL  109 (109)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
Confidence            9999999873

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.60  E-value=3.2e-16  Score=105.26  Aligned_cols=72  Identities=28%  Similarity=0.412  Sum_probs=58.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE-EEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l   73 (356)
                      |++++|.|.+.|.|.|.++|+|||.++... .......++ ..|.|..++.+|+|.|+|.|.|..|...+ .+.|
T Consensus        22 ~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQCVATNARGTVVSREASL   95 (97)
T ss_dssp             CCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEEEEEEETTEEEECCCEEE
T ss_pred             CCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEEEEEEECCCEEEEEEEEE
Confidence            478999999999999999999999999653 233333444 37888999999999999999999998743 4554

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.3e-15  Score=101.71  Aligned_cols=92  Identities=24%  Similarity=0.251  Sum_probs=71.8

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCC---CCeEEEEECCEEccC-C--CceeEEE--e----CCEEEEEEccCCCCC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTKNGQPLNS-S--NILDLKY--K----NGVASLQIQEVFPED  256 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p---~p~i~W~~~g~~~~~-~--~~~~~~~--~----~~~~~L~i~~v~~~d  256 (356)
                      .+.|...|.++++.+|++++|.|.+.|.|   .|.|.|++++..... .  ..+....  .    ...+.|.|.+++.+|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            35677778889999999999999999999   578999998754322 1  1122111  1    123679999999999


Q ss_pred             CeEEEEEEEcCCCceEEEEEEecC
Q psy12422        257 EGVYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       257 ~G~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      +|.|+|.|.|..|.+.+++.|.+.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEE
Confidence            999999999999999999988754

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-15  Score=104.88  Aligned_cols=78  Identities=22%  Similarity=0.348  Sum_probs=61.8

Q ss_pred             CCceEEEEEeccCC---CCeeEEeeCCEEccc--C--CeeEE------ecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVGSTKP---PPTVKWYKGNRELSK--R--DYSMS------YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~~g~p---~~~v~W~k~g~~l~~--~--~~~~~------~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      |++++|.|.+.|.|   .|.|.|||++.....  .  +....      .....+.|.|.+++.+|+|.|+|.|.|..|.+
T Consensus        19 G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   98 (110)
T d2avga1          19 GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFD   98 (110)
T ss_dssp             TSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEETTEEE
T ss_pred             CCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEECCCeE
Confidence            89999999999998   578999998754321  1  11111      11234689999999999999999999999999


Q ss_pred             EEEEEEEEecc
Q psy12422         68 ETNCVVIVESE   78 (356)
Q Consensus        68 ~~~~~l~v~~~   78 (356)
                      +..+.|.|.+.
T Consensus        99 ~~~~~L~V~~~  109 (110)
T d2avga1          99 CSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEEEESC
T ss_pred             EEEEEEEEEec
Confidence            99999999753

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.9e-15  Score=99.55  Aligned_cols=71  Identities=18%  Similarity=0.363  Sum_probs=59.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+. .|+|.++|||||..+..+  .+.+...++.+.|.|.++..+|+|.|+|.|.|    ...++.|.|.
T Consensus        21 G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n----~~~s~~l~V~   93 (94)
T d1pd6a_          21 GHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTELFVK   93 (94)
T ss_dssp             TSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT----EEECCEEEEE
T ss_pred             CCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee----EEEEEEEEEE
Confidence            79999999984 589999999999998653  45666777888999999999999999999955    4556667764

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.58  E-value=4e-15  Score=97.35  Aligned_cols=71  Identities=15%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             CCceEEEEEec-cCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEecc
Q psy12422          1 MQNVIKVKVGS-TKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~~   78 (356)
                      ||+|+|.|.+. +.|.+.+.|||||+.+...     ..+  ..|.|.+++.+|+|.|.|.|.|..|... ..+.|.|.++
T Consensus        15 G~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-----~~~--~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          15 GETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-----RSD--PNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             TCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----SSC--CEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             CCeEEEEEEecCCCCCcEEEEEeeccccccc-----ccc--cccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            89999999995 5567789999999987421     122  2799999999999999999999988764 4578888754

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.1e-15  Score=96.56  Aligned_cols=71  Identities=18%  Similarity=0.275  Sum_probs=58.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC---CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+ +.|.|.+.|||+|+++..+   .+.+...++..+|+|.+++.+|+|.|+|.|.|    ...++.|.|.
T Consensus        15 G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~a~l~V~   88 (90)
T d1x44a1          15 GERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLSVD   88 (90)
T ss_dssp             TEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEEEE
T ss_pred             CCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ceEEEEEEEE
Confidence            7899999999 5688999999999998643   34456667788999999999999999999955    4556677765

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.4e-15  Score=103.41  Aligned_cols=77  Identities=17%  Similarity=0.165  Sum_probs=60.2

Q ss_pred             CCceEEEEEeccCC-CCeeEEeeCCEEccc--C-Cee-EEe--cCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE-EEEE
Q psy12422          1 MQNVIKVKVGSTKP-PPTVKWYKGNRELSK--R-DYS-MSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCV   72 (356)
Q Consensus         1 g~~v~l~C~~~g~p-~~~v~W~k~g~~l~~--~-~~~-~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~   72 (356)
                      |+++.|.|.+.|.| .|.|+|+|+++.+..  . .+. ...  ..+...|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus        18 G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~   97 (104)
T d2aw2a1          18 GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTT   97 (104)
T ss_dssp             TSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEEEEE
Confidence            89999999999998 589999998876642  1 221 222  22345799999999999999999999999865 4688


Q ss_pred             EEEec
Q psy12422         73 VIVES   77 (356)
Q Consensus        73 l~v~~   77 (356)
                      |.|.+
T Consensus        98 l~V~e  102 (104)
T d2aw2a1          98 LYVTD  102 (104)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            88864

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.3e-16  Score=106.44  Aligned_cols=80  Identities=21%  Similarity=0.334  Sum_probs=62.7

Q ss_pred             CCceEEEEEeccCC---CCeeEEeeCCEEccc----CCeeEE------ecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVGSTKP---PPTVKWYKGNRELSK----RDYSMS------YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~~g~p---~~~v~W~k~g~~l~~----~~~~~~------~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      |++++|.|.+.|.|   .|.|.|||++.....    ......      ...+.+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus        15 G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   94 (113)
T d2dava1          15 GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD   94 (113)
T ss_dssp             TCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEE
T ss_pred             CCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCEE
Confidence            89999999999998   579999998754321    111111      11234579999999999999999999999999


Q ss_pred             EEEEEEEEecccc
Q psy12422         68 ETNCVVIVESEEE   80 (356)
Q Consensus        68 ~~~~~l~v~~~~~   80 (356)
                      +..+.|.|.+.+.
T Consensus        95 ~~~~~L~V~~~~~  107 (113)
T d2dava1          95 SCSFDLEVHESTG  107 (113)
T ss_dssp             EECCEEEEECCCC
T ss_pred             EEEEEEEEEcCCC
Confidence            9999999986543

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.6e-15  Score=100.77  Aligned_cols=90  Identities=20%  Similarity=0.249  Sum_probs=70.4

Q ss_pred             CeecccC-CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEE---Ee-C--------CEEEEEEccCCCCC
Q psy12422        190 PQFANKL-TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLK---YK-N--------GVASLQIQEVFPED  256 (356)
Q Consensus       190 p~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~---~~-~--------~~~~L~i~~v~~~d  256 (356)
                      |.+..+. ..+.+.+|+++.|.|.+.|.|.|.|.|++||..+.........   .. .        ..++|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            4444433 3466888999999999999999999999999988754422111   11 0        13689999999999


Q ss_pred             Ce-EEEEEEEcCCCceEEEEEEec
Q psy12422        257 EG-VYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       257 ~G-~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      .| .|+|.|.|..|.+.+.+.|.|
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~~  105 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLIY  105 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEEC
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEEC
Confidence            99 599999999999999998874

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-15  Score=100.69  Aligned_cols=81  Identities=16%  Similarity=0.112  Sum_probs=67.3

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCC-CeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPE-PRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...+..+++.+|+++.|.|.+.|.|+ ++|+|+|+|..+...... ....++  +|.|.+++.+|+|.|+|.|.
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~-~~~~~~--~L~I~~v~~~D~G~Y~C~a~   80 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSR-WAGMGR--RLLLRSVQLHDSGNYSCYRA   80 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEE-EEEESS--EEEECSCCGGGCEEEEEESS
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeE-EecCCC--EEEECCCChhcCEEEEEEEC
Confidence            46788888888899999999999999988775 589999999888765543 333444  89999999999999999998


Q ss_pred             cCCCc
Q psy12422        266 NSLGT  270 (356)
Q Consensus       266 n~~g~  270 (356)
                      |..+.
T Consensus        81 n~~~~   85 (93)
T d1n26a1          81 GRPAG   85 (93)
T ss_dssp             SSCSC
T ss_pred             Ccccc
Confidence            87653

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.6e-15  Score=99.82  Aligned_cols=89  Identities=16%  Similarity=0.233  Sum_probs=64.0

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEE---CCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK---NGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~---~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      .|.|. .+.++.+.+|+++.|.|.+.|.|.|.+.|.+   ++..+..............++|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            47775 4788999999999999999999988755432   3333322222222222334689999999999999999999


Q ss_pred             cCCCceEEE-EEEe
Q psy12422        266 NSLGTAETK-CKLT  278 (356)
Q Consensus       266 n~~g~~~~~-~~l~  278 (356)
                      |..|..... +.|.
T Consensus        81 N~~G~~~s~~a~L~   94 (96)
T d2c9aa1          81 TEGGVGISNYAELV   94 (96)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEE
Confidence            999986544 4553

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=8.2e-16  Score=104.59  Aligned_cols=81  Identities=17%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             CceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      ..+.+.+|+.+.|.|.+ .|.|.|.+.|+++|..+..............++|.|.+++.+|+|.|+|.|.|..|....++
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV   91 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEEE
Confidence            55789999999999998 78999999999998776543332233333334799999999999999999999999887765


Q ss_pred             EE
Q psy12422        276 KL  277 (356)
Q Consensus       276 ~l  277 (356)
                      ..
T Consensus        92 ~~   93 (105)
T d1cs6a2          92 FS   93 (105)
T ss_dssp             EC
T ss_pred             Ee
Confidence            44

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.4e-15  Score=104.04  Aligned_cols=88  Identities=23%  Similarity=0.269  Sum_probs=67.7

Q ss_pred             ecccCCceeecCCCeEEEEEEEcCCC---CCeEEEEECCEEcc---CCCceeEE--Ee----CCEEEEEEccCCCCCCeE
Q psy12422        192 FANKLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTKNGQPLN---SSNILDLK--YK----NGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       192 ~~~~~~~~~v~~g~~~~l~C~~~g~p---~p~i~W~~~g~~~~---~~~~~~~~--~~----~~~~~L~i~~v~~~d~G~  259 (356)
                      |...|.++++.+|++++|.|.+.|.|   .|.|.|+|++....   ....+...  ..    ...+.|.|.+++.+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            45566788999999999999999998   57899999864432   11222211  11    123579999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEec
Q psy12422        260 YVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       260 Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      |+|.|.|..|...+++.|.+
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V  102 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEV  102 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEE
T ss_pred             EEEEEEeCCCEEEEEEEEEE
Confidence            99999999999988888773

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.4e-15  Score=99.30  Aligned_cols=65  Identities=17%  Similarity=0.279  Sum_probs=54.6

Q ss_pred             CCceEEEE------EeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVK------VGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C------~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      |+...|.|      .+.|+|.|.|+|||||++|..+.......++  .|.|.+++.+|+|.|+|.|.|..|..
T Consensus        14 g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2          14 AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--RLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             SSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETT--EEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             CCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCC--EEEEcccccccCcEEEEEEEECcCCE
Confidence            67889999      5689999999999999999865444445555  69999999999999999999976644

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.8e-16  Score=106.07  Aligned_cols=81  Identities=21%  Similarity=0.348  Sum_probs=63.9

Q ss_pred             CceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCceeEEE-------eCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        197 TDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILDLKY-------KNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      ....+.+|+.++|.|.+ .|+|.|.+.|+++|..+..........       ....+.|.|.+++.+|+|.|+|.|.|..
T Consensus        10 ~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   89 (104)
T d1nbqa2          10 IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY   89 (104)
T ss_dssp             CBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSS
T ss_pred             CCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECC
Confidence            34568899999999998 689999999999998886554332211       1223579999999999999999999999


Q ss_pred             CceEEEEEE
Q psy12422        269 GTAETKCKL  277 (356)
Q Consensus       269 g~~~~~~~l  277 (356)
                      |....+..+
T Consensus        90 G~~~~s~~v   98 (104)
T d1nbqa2          90 GTPMTSNAV   98 (104)
T ss_dssp             SCCEECCCB
T ss_pred             CceEEEEEE
Confidence            988765544

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.9e-15  Score=102.52  Aligned_cols=76  Identities=25%  Similarity=0.401  Sum_probs=59.4

Q ss_pred             eeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCcee--------EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        199 KTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNILD--------LKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~--------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ..+.+|+++.|.|.+ .|+|.+.|+|+++|..+.......        .......+.|.|.+++.+|+|.|+|.|.|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            368899999999998 589999999999998886543222        12223345799999999999999999999999


Q ss_pred             ceEEE
Q psy12422        270 TAETK  274 (356)
Q Consensus       270 ~~~~~  274 (356)
                      ....+
T Consensus        92 ~~~~s   96 (110)
T d1f97a2          92 TAMRS   96 (110)
T ss_dssp             CCEEC
T ss_pred             cEEEE
Confidence            87653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.55  E-value=9.4e-15  Score=95.72  Aligned_cols=70  Identities=10%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             CCceEEEEEec-cCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEec
Q psy12422          1 MQNVIKVKVGS-TKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~-g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~   77 (356)
                      |++|+|+|.+. +.|.+.+.|||||+.+...     ..+.  .|.|.+++.+|+|.|.|.|.|..|... ..+.|.|+.
T Consensus        17 G~~v~L~C~~~~~~p~~~~~W~kng~~~~~~-----~~~~--~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          17 EDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----HHNS--DFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             TCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----EECC--CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCeEEEEEEecCCCCCcEEEEEEccccccee-----cccc--ccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            89999999986 5566789999999987421     2222  689999999999999999999988754 457777753

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.1e-15  Score=100.64  Aligned_cols=88  Identities=23%  Similarity=0.363  Sum_probs=65.1

Q ss_pred             eecccCCceeecCCCeEEEEEEEcCCC-CCeEEEEECCEEccCC---CceeEEEeC--CEEEEEEccCCCCCCeEEEEEE
Q psy12422        191 QFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTKNGQPLNSS---NILDLKYKN--GVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       191 ~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~~g~~~~~~---~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      .+...+....+.+|+++.|.|.+.|.| .|.|.|+|++..+...   .........  ....|.|.+++.+|+|.|+|.|
T Consensus         5 ~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   84 (104)
T d2aw2a1           5 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSA   84 (104)
T ss_dssp             ECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEE
Confidence            344556678899999999999999999 5899999977655321   112222222  2457999999999999999999


Q ss_pred             EcCCCceEE-EEEEe
Q psy12422        265 TNSLGTAET-KCKLT  278 (356)
Q Consensus       265 ~n~~g~~~~-~~~l~  278 (356)
                      .|..|.... ++.|.
T Consensus        85 ~N~~G~~~s~~~~l~   99 (104)
T d2aw2a1          85 NFQSNLIESHSTTLY   99 (104)
T ss_dssp             EETTEEEECCCEEEE
T ss_pred             EcCCCeEEEEEEEEE
Confidence            999997543 44443

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.7e-15  Score=99.22  Aligned_cols=76  Identities=17%  Similarity=0.227  Sum_probs=63.0

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEccc---CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~---~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      ||.+.|.|.+ .+.|.+.|+|||+|..+..   ....+...++  +|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        17 ~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~   94 (101)
T d1iray1          17 NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFV   94 (101)
T ss_dssp             TSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETT--EEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCC--EEEeccceecCCEEEEEEEECCCCeEEEEEEEEEE
Confidence            7899999988 5789999999999876542   1222334444  79999999999999999999999999999999998


Q ss_pred             cc
Q psy12422         77 SE   78 (356)
Q Consensus        77 ~~   78 (356)
                      ..
T Consensus        95 ~~   96 (101)
T d1iray1          95 EN   96 (101)
T ss_dssp             CC
T ss_pred             eC
Confidence            64

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.9e-15  Score=98.87  Aligned_cols=70  Identities=16%  Similarity=0.224  Sum_probs=55.6

Q ss_pred             CCceEEEEEeccCCC-CeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPP-PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.|.|+ +.|+|||+|.++..........++  +|.|.+++.+|+|.|+|.|.|..+   .++.|.|
T Consensus        21 G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~---~t~~l~V   91 (93)
T d1n26a1          21 GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR--RLLLRSVQLHDSGNYSCYRAGRPA---GTVHLLV   91 (93)
T ss_dssp             TCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESS--EEEECSCCGGGCEEEEEESSSSCS---CEEEEEE
T ss_pred             CCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCC--EEEECCCChhcCEEEEEEECCccc---cEEEEEE
Confidence            799999999988765 589999999999766655555555  799999999999999999987543   2344544

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.54  E-value=1.3e-15  Score=100.08  Aligned_cols=71  Identities=14%  Similarity=0.140  Sum_probs=59.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC-CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+++.|.|.+ +.|.|.+.|||||.++..+ ++.+...++..+|.|.+++.+|+|.|+|.|.|..    .++.|.|.
T Consensus        16 G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~----~sa~l~V~   87 (89)
T d1tiua_          16 GETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK----SAANLKVK   87 (89)
T ss_dssp             TSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB----CCEEEEEE
T ss_pred             CCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE----EEEEEEEE
Confidence            7899999998 5799999999999999754 5667777788899999999999999999996654    34566665

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.54  E-value=1.2e-14  Score=94.21  Aligned_cols=80  Identities=16%  Similarity=0.188  Sum_probs=65.8

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...|....+.+|++++|.|.+.|.|.+. +.|+++|..+....          .+|.|.+++.+|+|.|+|+|.
T Consensus         3 lPkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~i~~~~~~d~G~Y~C~a~   72 (84)
T d1fnla1           3 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----------SSYFIDAATVNDSGEYRCQTN   72 (84)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC----------SEEEESSCCGGGCEEEEEECS
T ss_pred             CCCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc----------eeeEecCCcccCCEEEEEEcc
Confidence            4567788888888999999999999999999886 77788887765332          279999999999999999999


Q ss_pred             cCCCceEEEEE
Q psy12422        266 NSLGTAETKCK  276 (356)
Q Consensus       266 n~~g~~~~~~~  276 (356)
                      |..++....+.
T Consensus        73 ~s~~S~~v~L~   83 (84)
T d1fnla1          73 LSTLSDPVQLE   83 (84)
T ss_dssp             SSCCCCCEEEE
T ss_pred             CCCccccEEEE
Confidence            98877655443

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.7e-15  Score=98.29  Aligned_cols=72  Identities=17%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v   75 (356)
                      |+++.|.|.+.| |+|.+.|+++|+++.... ......++  +|.|.+++.+|+|.|+|.|.|..|.......+.+
T Consensus        12 G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~--~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~   84 (92)
T d1olza1          12 GGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAK   84 (92)
T ss_dssp             TSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT--CEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEE
T ss_pred             CCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee--EEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEE
Confidence            899999999988 678999999999986542 22334444  6999999999999999999998887665544443

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=94.74  Aligned_cols=71  Identities=21%  Similarity=0.186  Sum_probs=57.2

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE-EEEEEEEecc
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVESE   78 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~~   78 (356)
                      ||+|+|+|.+.+. |++.+.|||||+.+....     ..  ..|.|.+++.+|+|.|.|+|.|..+... ..+.|.|...
T Consensus        15 G~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-----~~--~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~   87 (89)
T d1f2qa2          15 GQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----EN--HNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA   87 (89)
T ss_dssp             TSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----CS--SEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred             CCEEEEEEEecCCCCCeEEEEEEeeecccccc-----cc--ceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeC
Confidence            8999999999654 566899999999886431     11  2799999999999999999999887653 5578888765

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.1e-14  Score=100.14  Aligned_cols=77  Identities=21%  Similarity=0.266  Sum_probs=59.2

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcccCC---------eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE-
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKRD---------YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-   69 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~---------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~-   69 (356)
                      |+++.|.|.+ .|.|.+.|+|+|+|..+....         ...........|.|.+++.+|+|.|+|.|.|..|.+.+ 
T Consensus        17 G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s   96 (110)
T d1f97a2          17 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS   96 (110)
T ss_dssp             TSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEEC
T ss_pred             CCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCcEEEE
Confidence            7899999998 589999999999999885421         11122223347999999999999999999999998765 


Q ss_pred             -EEEEEEec
Q psy12422         70 -NCVVIVES   77 (356)
Q Consensus        70 -~~~l~v~~   77 (356)
                       .+.|.|.+
T Consensus        97 ~~v~l~V~~  105 (110)
T d1f97a2          97 EAAHMDAVE  105 (110)
T ss_dssp             CCEEEEEES
T ss_pred             EEEEEEEEe
Confidence             45566554

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.8e-15  Score=98.24  Aligned_cols=78  Identities=18%  Similarity=0.202  Sum_probs=62.5

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ....+.+|+++.|.|.+.| |+|.+.|+++|..+...........++  .|.|.+++.+|+|.|+|.|.|..|.......
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~--~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~   81 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSEERVKNKTVFQV   81 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT--CEEECSCCGGGCEEEEEEEEEECSSSEEEEE
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee--EEEECCCCHHHCcEEEEEEEEcCCCEEEEEE
Confidence            3467999999999999998 778999999998887654322222333  6999999999999999999999997765554


Q ss_pred             E
Q psy12422        277 L  277 (356)
Q Consensus       277 l  277 (356)
                      +
T Consensus        82 l   82 (92)
T d1olza1          82 V   82 (92)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.7e-14  Score=96.50  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=56.4

Q ss_pred             CCceEEEEEeccCCCCeeEEee---CCEEcccCC-eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE-EEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK---GNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN-CVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k---~g~~l~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~v   75 (356)
                      |+++.|.|.+.|.|.|.+.|++   ++..+.... ..+.......+|.|.+++.+|+|.|+|.|.|..|.+.+. +.|.|
T Consensus        16 G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          16 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             SSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEE
Confidence            8999999999999988766543   333333222 222333345589999999999999999999999987655 68877


Q ss_pred             e
Q psy12422         76 E   76 (356)
Q Consensus        76 ~   76 (356)
                      +
T Consensus        96 k   96 (96)
T d2c9aa1          96 K   96 (96)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.52  E-value=2.1e-14  Score=93.83  Aligned_cols=74  Identities=18%  Similarity=0.253  Sum_probs=57.7

Q ss_pred             ceeecCCCeEEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE-EEE
Q psy12422        198 DKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE-TKC  275 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~  275 (356)
                      ...+.+|+.++|.|.+.+ .|.+.+.|+|||..+...        .....|.|.+++.+|+|.|.|+|.|..|... ..+
T Consensus         9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~--------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v   80 (88)
T d2fcba2           9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS--------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPV   80 (88)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc--------ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeE
Confidence            446889999999999965 566789999999876422        2233799999999999999999999988654 334


Q ss_pred             EEec
Q psy12422        276 KLTP  279 (356)
Q Consensus       276 ~l~p  279 (356)
                      .|.+
T Consensus        81 ~l~V   84 (88)
T d2fcba2          81 TITV   84 (88)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-14  Score=94.06  Aligned_cols=78  Identities=22%  Similarity=0.261  Sum_probs=61.7

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCe-EEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPR-VSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      |.|...|....+.+|+.++|.|.+.+.|.+. +.|++++..+....          ..|.|.+++.+|+|.|.|+|.|..
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------SEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc----------ceeEECCCChhhCCcEEEEecCCC
Confidence            6677777778899999999999999999875 77888998776432          279999999999999999999988


Q ss_pred             CceEEEEEE
Q psy12422        269 GTAETKCKL  277 (356)
Q Consensus       269 g~~~~~~~l  277 (356)
                      +++...+.+
T Consensus        72 ~S~~v~l~V   80 (82)
T d1f2qa1          72 ESEPVYLEV   80 (82)
T ss_dssp             CCCCEEEEE
T ss_pred             CcccEEEEE
Confidence            877655544

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.9e-15  Score=101.67  Aligned_cols=87  Identities=18%  Similarity=0.334  Sum_probs=65.5

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCcee----------EEEeCCEEEEEEccCCCCCCeE
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILD----------LKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~----------~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      +.+...+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+.......          .....  .+|.|.+++.+|+|.
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~   82 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP--TGITFKSVTREDTGT   82 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET--TEEECSCCCTTSCSE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecC--ceEEEecccccceee
Confidence            444445566789999999999999999999999999654433211111          01112  379999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEe
Q psy12422        260 YVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       260 Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |+|.|.|..|.....+.+.
T Consensus        83 Y~C~a~n~~G~~~~~~~v~  101 (105)
T d1nbqa1          83 YTCMVSEEGGNSYGEVKVK  101 (105)
T ss_dssp             EEEEEEETTSSCEECCEEE
T ss_pred             EEEEEEECCCCEEEEEEEE
Confidence            9999999999988766654

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.51  E-value=1.7e-14  Score=93.79  Aligned_cols=79  Identities=13%  Similarity=0.196  Sum_probs=65.7

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCC-eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEP-RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      +|.+...+....+.+|+.++|.|.+.+.|.+ .+.|++||..+....          ..|.|.+++.+|+|.|.|+|.|.
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~----------~~l~i~~v~~~dsG~Y~C~a~ns   73 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQT   73 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEECTTS
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc----------cceEEeeccccCCcEEEEECCCC
Confidence            4667777777889999999999999999876 499999999886542          26899999999999999999998


Q ss_pred             CCceEEEEEE
Q psy12422        268 LGTAETKCKL  277 (356)
Q Consensus       268 ~g~~~~~~~l  277 (356)
                      .+++...+.+
T Consensus        74 ~~S~~v~l~V   83 (85)
T d2fcba1          74 SLSDPVHLTV   83 (85)
T ss_dssp             BCCCCEEEEE
T ss_pred             cccccEEEEE
Confidence            8777665544

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.1e-14  Score=97.34  Aligned_cols=74  Identities=14%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCe--e----EEecC-------CeEEEEEeeCCCCCCe-EEEEEEEeCCce
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDY--S----MSYSD-------GVVSMEIIDCKPEDSG-EYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~--~----~~~~~-------~~~~L~i~~~~~~D~G-~Y~C~a~n~~g~   66 (356)
                      |+++.|.|.+.|.|.|.|.|++||..+.....  .    .....       ....|+|.+++.+|.| .|+|.|.|..|.
T Consensus        17 G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~   96 (107)
T d1iray3          17 GSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI   96 (107)
T ss_dssp             TCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECSSCE
T ss_pred             CCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeCCCe
Confidence            78999999999999999999999999864321  1    01101       1348999999999999 599999999999


Q ss_pred             eEEEEEEE
Q psy12422         67 DETNCVVI   74 (356)
Q Consensus        67 ~~~~~~l~   74 (356)
                      .++.+.|.
T Consensus        97 ~~~~i~L~  104 (107)
T d1iray3          97 DAAYIQLI  104 (107)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            98888775

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.48  E-value=3.7e-14  Score=92.78  Aligned_cols=69  Identities=14%  Similarity=0.210  Sum_probs=54.8

Q ss_pred             CCceeecCCCeEEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      +....+.+|++++|.|.+.+ .|.+.+.|+|||..+...      ...  ..|.|.+++.+|+|.|.|+|.|..|...
T Consensus         9 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~------~~~--~~l~I~~v~~~dsG~Y~C~a~n~~~~~~   78 (89)
T d1fnla2           9 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------HHN--SDFHIPKATLKDSGSYFCRGLVGSKNVS   78 (89)
T ss_dssp             CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------EEC--CCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee------ccc--cccEECccceeccceEEEEEEeCCCCeE
Confidence            33456889999999999964 556689999999876421      122  2789999999999999999999988643

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=5.4e-14  Score=95.17  Aligned_cols=87  Identities=15%  Similarity=0.334  Sum_probs=64.0

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccC----CC------ceeEEEeCCEEEEEEccCCCCCCeE
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNS----SN------ILDLKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~----~~------~~~~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      |.+........+.+|+++.|.|.+.|.|.|.+.|++++.....    ..      ........  ++|.|.+++.+|+|.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~tL~I~~v~~~D~G~   79 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS--SGITFSSVTRKDNGE   79 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET--TEEEESCCCGGGCEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecC--CEEEEeECCccCCEE
Confidence            4455556678899999999999999999999999984322211    00      00111122  379999999999999


Q ss_pred             EEEEEEcCCCceEEEEEEe
Q psy12422        260 YVCTATNSLGTAETKCKLT  278 (356)
Q Consensus       260 Y~C~a~n~~g~~~~~~~l~  278 (356)
                      |.|.|.|..|....+..+.
T Consensus        80 Y~C~a~n~~g~~~~~~~v~   98 (102)
T d1f97a1          80 YTCMVSEEGGQNYGEVSIH   98 (102)
T ss_dssp             EEEEEEETTSSSEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEE
Confidence            9999999999877665553

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.7e-14  Score=91.60  Aligned_cols=76  Identities=22%  Similarity=0.225  Sum_probs=58.2

Q ss_pred             CceeecCCCeEEEEEEEcCC-CCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE-EE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGD-PEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE-TK  274 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~  274 (356)
                      ....+.+|+.++|.|.+.+. |++.+.|+|||..+.....        ...|.|.+++.+|+|.|.|+|.|..+... ..
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~--------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~   79 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE--------NHNISITNATVEDSGTYYCTGKVWQLDYESEP   79 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC--------SSEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc--------cceEEEeeeeeecCcEEEEEEEeCCCCeEeee
Confidence            34568899999999999665 4557999999998864321        23799999999999999999999887543 33


Q ss_pred             EEEecC
Q psy12422        275 CKLTPL  280 (356)
Q Consensus       275 ~~l~p~  280 (356)
                      +.+.+.
T Consensus        80 v~i~V~   85 (89)
T d1f2qa2          80 LNITVI   85 (89)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444433

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.5e-14  Score=96.42  Aligned_cols=91  Identities=13%  Similarity=0.092  Sum_probs=69.5

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcC-CCCC--eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEP--RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p--~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      ..|+.+.+.+....+.+|++++|.|.+.| +|.|  .+.|++++..+.....   ......++|.|..+..+|+|.|+|+
T Consensus         2 ~~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~   78 (103)
T d1iama1           2 WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCR   78 (103)
T ss_dssp             BCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEE
T ss_pred             CCCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEE
Confidence            35667777777778999999999999975 6766  4789999988864321   1122346899999999999999999


Q ss_pred             EEcCCCceEEEEEEecC
Q psy12422        264 ATNSLGTAETKCKLTPL  280 (356)
Q Consensus       264 a~n~~g~~~~~~~l~p~  280 (356)
                      |.|..|....+..+...
T Consensus        79 A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          79 TELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEEECGGGTSCEEEEEC
T ss_pred             EEeCCCCccCeEeeeEc
Confidence            99999987666665533

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.48  E-value=7.6e-15  Score=99.71  Aligned_cols=68  Identities=18%  Similarity=0.193  Sum_probs=54.8

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcccC---CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEE
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN   70 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   70 (356)
                      |+++.|.|.+ .|.|.|.|+|+|||..+...   ++.....++  +|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        19 G~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          19 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             TSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTC--CEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCC--EEeecccccccCcEEEEEEEECCCCEEEE
Confidence            7999999998 78999999999999876432   222223333  79999999999999999999988876654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.3e-15  Score=101.77  Aligned_cols=75  Identities=20%  Similarity=0.296  Sum_probs=58.3

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcccCC-eeE-------EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEE
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKRD-YSM-------SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC   71 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~-~~~-------~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   71 (356)
                      |++++|.|.+ .|.|.|.+.|+|||..+.... +..       ........|+|.+++.+|+|.|+|.|.|..|.+..+.
T Consensus        17 G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~   96 (104)
T d1nbqa2          17 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSN   96 (104)
T ss_dssp             TSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred             CCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceEEEE
Confidence            7999999998 689999999999999886432 111       1112234799999999999999999999999887665


Q ss_pred             EEEE
Q psy12422         72 VVIV   75 (356)
Q Consensus        72 ~l~v   75 (356)
                      .+.|
T Consensus        97 ~v~v  100 (104)
T d1nbqa2          97 AVRM  100 (104)
T ss_dssp             CBCC
T ss_pred             EEEE
Confidence            4443

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.5e-14  Score=93.63  Aligned_cols=72  Identities=19%  Similarity=0.286  Sum_probs=60.3

Q ss_pred             eeecCCCeEEEEE------EEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceE
Q psy12422        199 KTIDDGQCLDLSA------VVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAE  272 (356)
Q Consensus       199 ~~v~~g~~~~l~C------~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  272 (356)
                      +.+..|....|.|      .+.++|+|.|.|++||.++...... ....++  .|.|.++..+|+|.|+|.|.|..|...
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~-~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-FSGVKD--RLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSS-EEEETT--EEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcE-EEecCC--EEEEcccccccCcEEEEEEEECcCCEE
Confidence            5688899999999      6689999999999999999865543 333344  799999999999999999999888654


Q ss_pred             E
Q psy12422        273 T  273 (356)
Q Consensus       273 ~  273 (356)
                      .
T Consensus        86 ~   86 (103)
T d1iray2          86 Y   86 (103)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.5e-15  Score=100.89  Aligned_cols=74  Identities=16%  Similarity=0.247  Sum_probs=57.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCC-----------eeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRD-----------YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-----------~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |+++.|.|.+.|.|.|.+.|+|++..+....           ......++  +|.|.+++.+|+|.|+|.|.|..|.+..
T Consensus        19 g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~G~~~~   96 (105)
T d1nbqa1          19 NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT--GITFKSVTREDTGTYTCMVSEEGGNSYG   96 (105)
T ss_dssp             TCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETT--EEECSCCCTTSCSEEEEEEEETTSSCEE
T ss_pred             CCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCc--eEEEecccccceeeEEEEEEECCCCEEE
Confidence            7899999999999999999999765443110           00111122  7999999999999999999999999987


Q ss_pred             EEEEEEe
Q psy12422         70 NCVVIVE   76 (356)
Q Consensus        70 ~~~l~v~   76 (356)
                      .+.|.|.
T Consensus        97 ~~~v~v~  103 (105)
T d1nbqa1          97 EVKVKLI  103 (105)
T ss_dssp             CCEEECC
T ss_pred             EEEEEEE
Confidence            7666654

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=2.6e-13  Score=91.73  Aligned_cols=74  Identities=15%  Similarity=0.297  Sum_probs=55.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc-----C------CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK-----R------DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~-----~------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |+++.|.|.+.|.|.|.|.|+|++.....     .      .......++  +|+|.+++.+|+|.|+|.|.|..|....
T Consensus        16 G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--tL~I~~v~~~D~G~Y~C~a~n~~g~~~~   93 (102)
T d1f97a1          16 NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSS--GITFSSVTRKDNGEYTCMVSEEGGQNYG   93 (102)
T ss_dssp             TCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETT--EEEESCCCGGGCEEEEEEEEETTSSSEE
T ss_pred             CCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCC--EEEEeECCccCCEEEEEEEEECCCCEEE
Confidence            78999999999999999999995432210     0      111122222  7999999999999999999999998877


Q ss_pred             EEEEEEe
Q psy12422         70 NCVVIVE   76 (356)
Q Consensus        70 ~~~l~v~   76 (356)
                      .+.+.|.
T Consensus        94 ~~~v~v~  100 (102)
T d1f97a1          94 EVSIHLT  100 (102)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7666554

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-14  Score=100.05  Aligned_cols=93  Identities=20%  Similarity=0.409  Sum_probs=71.7

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCC-CCeEEEEECCEEccCCC--ceeEE--EeCC--EEEEEEccCCCCC-Ce
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTKNGQPLNSSN--ILDLK--YKNG--VASLQIQEVFPED-EG  258 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~~g~~~~~~~--~~~~~--~~~~--~~~L~i~~v~~~d-~G  258 (356)
                      ..||.+. .+..+.+.+|+.+.|.|.+.|.| ++.+.|++++..+....  ++.+.  ....  .+.|.|.+++.+| +|
T Consensus         5 ~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G   83 (115)
T d2crya1           5 NGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQT   83 (115)
T ss_dssp             CSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHS
T ss_pred             ecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCe
Confidence            4567665 44567889999999999999865 55799999998886543  22222  1222  3579999999999 79


Q ss_pred             EEEEEEEcCCCceEEEEEEecC
Q psy12422        259 VYVCTATNSLGTAETKCKLTPL  280 (356)
Q Consensus       259 ~Y~C~a~n~~g~~~~~~~l~p~  280 (356)
                      .|+|.|.|..|.+.+.+.|.+.
T Consensus        84 ~Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          84 IYNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             CEEEEEECSSCEEEEEECCCCS
T ss_pred             EEEEEEEECCCeEEEEEEEEEE
Confidence            9999999999999999888744

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-13  Score=92.40  Aligned_cols=76  Identities=11%  Similarity=0.123  Sum_probs=59.8

Q ss_pred             CCceEEEEEecc-CCCC--eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEec
Q psy12422          1 MQNVIKVKVGST-KPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES   77 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~--~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~   77 (356)
                      |++++|+|.+.| .|.|  .++|+|+++.+....  .........|.|..++.+|.|.|+|+|+|..|.....+.+.+..
T Consensus        19 G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~--~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~s~   96 (103)
T d1iama1          19 GKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP--AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSA   96 (103)
T ss_dssp             TSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE--CCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECC
T ss_pred             CCEEEEEEEecCCCCCCceEEEEccccccccccc--cccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeEcC
Confidence            899999999965 6666  578999999986431  12233456899999999999999999999999887777777764


Q ss_pred             c
Q psy12422         78 E   78 (356)
Q Consensus        78 ~   78 (356)
                      +
T Consensus        97 p   97 (103)
T d1iama1          97 P   97 (103)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.7e-14  Score=94.66  Aligned_cols=82  Identities=15%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             CceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCC--CceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        197 TDKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSS--NILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      ....+.+|+.+.|.|.+ .+.|.+.|.|+|+|..+...  ....+...++  +|.|.+++.+|+|.|+|.|.|..|....
T Consensus        10 ~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   87 (101)
T d1iray1          10 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLRI   87 (101)
T ss_dssp             CCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETT--EEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCC--EEEeccceecCCEEEEEEEECCCCeEEE
Confidence            34567889999999988 57889999999988655432  2333444444  8999999999999999999999999998


Q ss_pred             EEEEecC
Q psy12422        274 KCKLTPL  280 (356)
Q Consensus       274 ~~~l~p~  280 (356)
                      ++.|.+.
T Consensus        88 ~~~L~V~   94 (101)
T d1iray1          88 KISAKFV   94 (101)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888754

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.37  E-value=3.9e-13  Score=87.17  Aligned_cols=65  Identities=17%  Similarity=0.340  Sum_probs=51.8

Q ss_pred             CCceEEEEEeccCCCC-eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      ||+|+|.|.+.+.|.+ .+.|||||..+....       .  .|.|.+++.+|+|.|+|.|.|..+.  ..+.|.|.
T Consensus        19 G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~-------~--~l~i~~v~~~dsG~Y~C~a~ns~~S--~~v~l~V~   84 (85)
T d2fcba1          19 EDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT-------Q--PSYRFKANNNDSGEYTCQTGQTSLS--DPVHLTVL   84 (85)
T ss_dssp             TCEEEEEEECSSCCCTTCCEEEETTEECTTCC-------S--SEEEEECCGGGCEEEEEECTTSBCC--CCEEEEEE
T ss_pred             CCeEEEEEEEeeccceeEEEeecccccccccc-------c--ceEEeeccccCCcEEEEECCCCccc--ccEEEEEE
Confidence            8999999999988876 589999999886432       1  6889999999999999999886543  34555553

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.35  E-value=6.7e-13  Score=85.75  Aligned_cols=57  Identities=23%  Similarity=0.371  Sum_probs=47.2

Q ss_pred             CCceEEEEEeccCCCCe-eEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCce
Q psy12422          1 MQNVIKVKVGSTKPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT   66 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~-v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   66 (356)
                      ||+|+|+|.+.|.|.+. +.|||||..+....         .+|.|.+++.+|+|.|+|+|.|....
T Consensus        20 G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~i~~~~~~d~G~Y~C~a~~s~~S   77 (84)
T d1fnla1          20 KDSVTLKCQGAYSPEDNSTQWFHNESLISSQA---------SSYFIDAATVNDSGEYRCQTNLSTLS   77 (84)
T ss_dssp             TCCEEEEEECCCBTTBCCCEEEETTEEEESSC---------SEEEESSCCGGGCEEEEEECSSSCCC
T ss_pred             CCeEEEEEEeccCCCCeEEEEeeeceeeeecc---------eeeEecCCcccCCEEEEEEccCCCcc
Confidence            89999999999998885 67789998765332         17999999999999999999876543

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.5e-13  Score=93.24  Aligned_cols=85  Identities=11%  Similarity=0.103  Sum_probs=60.1

Q ss_pred             ccCCceeecCCCeEEEEEEEcC-CC--CCeEEEEECCEEccCCCceeEEEe--CCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKG-DP--EPRVSWTKNGQPLNSSNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g-~p--~p~i~W~~~g~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      +.+....+.+|+.++|.|.+.| +|  .+.|.|+++|..+...........  ...+.|.|.....+|.|.|+|+|.|..
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            3445567889999999999965 55  447999999998864332221111  123568888888888999999999998


Q ss_pred             CceEEEEEEe
Q psy12422        269 GTAETKCKLT  278 (356)
Q Consensus       269 g~~~~~~~l~  278 (356)
                      +.....+.+.
T Consensus        87 ~~~~~~~~~~   96 (106)
T d1zxqa1          87 MSRGGNIFHK   96 (106)
T ss_dssp             GGGTCCEEEE
T ss_pred             CCCCCeeEec
Confidence            8654444443

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.35  E-value=2.1e-13  Score=93.09  Aligned_cols=74  Identities=20%  Similarity=0.183  Sum_probs=56.7

Q ss_pred             CCceEEEEEe-ccCCCCeeEEeeCCEEcccC-------CeeEEecCCeEEEEEeeCCCCCCe---EEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVG-STKPPPTVKWYKGNRELSKR-------DYSMSYSDGVVSMEIIDCKPEDSG---EYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~-------~~~~~~~~~~~~L~i~~~~~~D~G---~Y~C~a~n~~g~~~~   69 (356)
                      |+++.|.|.+ .|.|.|.+.|+|++..+...       .......++  +|.|.+++.+|+|   .|.|.|.|..|.+..
T Consensus        17 G~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~   94 (111)
T d1biha2          17 GRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV   94 (111)
T ss_dssp             TEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS--CEEEEEECGGGCCSSEEEEEEEECTTCSSCE
T ss_pred             CCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccccc--ccEEeeeEeeccCCceEEEEEEEeCCCCceE
Confidence            7899999997 89999999999987765321       111222334  6999999999887   699999999998877


Q ss_pred             EEEEEEe
Q psy12422         70 NCVVIVE   76 (356)
Q Consensus        70 ~~~l~v~   76 (356)
                      .+.+.+.
T Consensus        95 ~~~~~~i  101 (111)
T d1biha2          95 VLVEYEI  101 (111)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            6555443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.9e-14  Score=96.69  Aligned_cols=78  Identities=17%  Similarity=0.248  Sum_probs=61.8

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeCCEEcccC---CeeEEe---cC-CeEEEEEeeCCCCC-CeEEEEEEEeCCceeEEEE
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKGNRELSKR---DYSMSY---SD-GVVSMEIIDCKPED-SGEYKCVATNKHGTDETNC   71 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~g~~l~~~---~~~~~~---~~-~~~~L~i~~~~~~D-~G~Y~C~a~n~~g~~~~~~   71 (356)
                      |+++.|.|.+.|. |++.+.|++++..+...   ++.+..   .+ ....|.|.+++.+| +|.|+|.|.|..|.++..+
T Consensus        21 G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~  100 (115)
T d2crya1          21 GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEII  100 (115)
T ss_dssp             TSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEE
T ss_pred             CCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEEE
Confidence            7899999999885 45579999999888642   232221   12 23479999999999 6999999999999999999


Q ss_pred             EEEEecc
Q psy12422         72 VVIVESE   78 (356)
Q Consensus        72 ~l~v~~~   78 (356)
                      .|.|...
T Consensus       101 ~L~V~~~  107 (115)
T d2crya1         101 RLKEQGS  107 (115)
T ss_dssp             CCCCSCS
T ss_pred             EEEEECC
Confidence            9988754

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.4e-13  Score=90.37  Aligned_cols=77  Identities=12%  Similarity=0.158  Sum_probs=54.4

Q ss_pred             CCceEEEEEecc-CC--CCeeEEeeCCEEcccCCe-eE--EecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12422          1 MQNVIKVKVGST-KP--PPTVKWYKGNRELSKRDY-SM--SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI   74 (356)
Q Consensus         1 g~~v~l~C~~~g-~p--~~~v~W~k~g~~l~~~~~-~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   74 (356)
                      |++++|+|.+.| +|  .+.|+|||||+++..... ..  ...+....|.|...+.+|.|.|+|+|.|..+.....+.+.
T Consensus        17 G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~~~~   96 (106)
T d1zxqa1          17 GKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHK   96 (106)
T ss_dssp             TSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTCCEEEE
T ss_pred             CCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCCeeEec
Confidence            789999999965 54  457999999999864321 11  1222344677777777788899999999987665555555


Q ss_pred             Eec
Q psy12422         75 VES   77 (356)
Q Consensus        75 v~~   77 (356)
                      +..
T Consensus        97 ~s~   99 (106)
T d1zxqa1          97 HSA   99 (106)
T ss_dssp             ECC
T ss_pred             ccC
Confidence            543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8e-13  Score=84.94  Aligned_cols=65  Identities=26%  Similarity=0.373  Sum_probs=48.8

Q ss_pred             CCceEEEEEeccCCCCe-eEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~-v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |++|+|+|.+.+.|.+. +.|||||..+....         ..|.|.+++.+|+|.|.|.|.|..+.  ..+.|.|.
T Consensus        16 G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~i~~v~~~d~G~Y~C~a~~s~~S--~~v~l~V~   81 (82)
T d1f2qa1          16 GENVTLTCNGNNFFEVSSTKWFHNGSLSEETN---------SSLNIVNAKFEDSGEYKCQHQQVNES--EPVYLEVF   81 (82)
T ss_dssp             TCCEEEECCTTCC----CCEEEETTEECSCCS---------SEEEECSCCGGGCEEEEEECTTSSCC--CCEEEEEE
T ss_pred             CCeEEEEEEEeeeeeecceeeeeeeeeeeccc---------ceeEECCCChhhCCcEEEEecCCCCc--ccEEEEEE
Confidence            89999999999998875 67889998876432         16999999999999999999886543  34556553

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.5e-13  Score=87.68  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=53.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc-----------CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK-----------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET   69 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~-----------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   69 (356)
                      |++|+|.|.. +.|.+.|.|++++..+..           .+..........+|+|.+++.+|+|.|+|.+.|..+..+ 
T Consensus        10 G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~-   87 (93)
T d1ccza1          10 YGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMK-   87 (93)
T ss_dssp             TCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCSCEE-
T ss_pred             CCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCCcEEE-
Confidence            7899999987 468899999999877631           111222233345899999999999999999988766554 


Q ss_pred             EEEEEE
Q psy12422         70 NCVVIV   75 (356)
Q Consensus        70 ~~~l~v   75 (356)
                       +.|.|
T Consensus        88 -~~l~V   92 (93)
T d1ccza1          88 -FFLYV   92 (93)
T ss_dssp             -EEEEE
T ss_pred             -EEEEE
Confidence             44444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.30  E-value=1.5e-13  Score=93.75  Aligned_cols=80  Identities=25%  Similarity=0.327  Sum_probs=59.7

Q ss_pred             ceeecCCCeEEEEEEE-cCCCCCeEEEEECCEEccCCCce-----eEEEeCCEEEEEEccCCCCCCe---EEEEEEEcCC
Q psy12422        198 DKTIDDGQCLDLSAVV-KGDPEPRVSWTKNGQPLNSSNIL-----DLKYKNGVASLQIQEVFPEDEG---VYVCTATNSL  268 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~-----~~~~~~~~~~L~i~~v~~~d~G---~Y~C~a~n~~  268 (356)
                      +.++.+|+++.|.|.+ .|+|.|.+.|++++..+......     .... ....+|.|.+++.+|+|   .|+|.|.|..
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA-GPDGNLYFTIVTKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE-CTTSCEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecc-ccccccEEeeeEeeccCCceEEEEEEEeCC
Confidence            4467899999999997 89999999999987665432211     1111 12237999999999876   7999999999


Q ss_pred             CceEEEEEEe
Q psy12422        269 GTAETKCKLT  278 (356)
Q Consensus       269 g~~~~~~~l~  278 (356)
                      |.+.....+.
T Consensus        90 g~~~~~~~~~   99 (111)
T d1biha2          90 VDEEVVLVEY   99 (111)
T ss_dssp             CSSCEEEEEE
T ss_pred             CCceEEEEEE
Confidence            9887765443

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.7e-12  Score=84.94  Aligned_cols=79  Identities=15%  Similarity=0.056  Sum_probs=60.0

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCC----------ceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSN----------ILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~----------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .+....|++++|.|.+. .|.+.|.|++++..+....          +.........++|+|.+++.+|+|.|.|+|.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            35678899999999875 5888999999887763211          111222334458999999999999999999999


Q ss_pred             CCceEEEEEE
Q psy12422        268 LGTAETKCKL  277 (356)
Q Consensus       268 ~g~~~~~~~l  277 (356)
                      .+..+..+.+
T Consensus        83 ~~t~~~~l~V   92 (93)
T d1ccza1          83 TDTMKFFLYV   92 (93)
T ss_dssp             CSCEEEEEEE
T ss_pred             CcEEEEEEEE
Confidence            9888766654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=1.9e-11  Score=81.18  Aligned_cols=74  Identities=15%  Similarity=0.239  Sum_probs=54.0

Q ss_pred             CCceEEEEEe-cc-CCCCeeEEeeCCEEccc----------CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee-
Q psy12422          1 MQNVIKVKVG-ST-KPPPTVKWYKGNRELSK----------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-   67 (356)
Q Consensus         1 g~~v~l~C~~-~g-~p~~~v~W~k~g~~l~~----------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-   67 (356)
                      |++|+|.|.. .. .+...|.|+|++..+..          .++.....++  +|+|.+++.+|+|.|+|.+.+..|.. 
T Consensus        10 G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ng--SL~I~nl~~~DsG~Y~c~v~~~~g~~~   87 (98)
T d1hnga1          10 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG--DLKIKNLTRDDSGTYNVTVYSTNGTRI   87 (98)
T ss_dssp             TSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS--CEEESSCCGGGCEEEEEEEEETTCCEE
T ss_pred             CCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCc--cEEEeCCCHHHCEEEEEEEEeCCCCEE
Confidence            8999999964 22 22347999999887631          1122223344  79999999999999999999988876 


Q ss_pred             -EEEEEEEEe
Q psy12422         68 -ETNCVVIVE   76 (356)
Q Consensus        68 -~~~~~l~v~   76 (356)
                       +..+.|.|.
T Consensus        88 ~~~~~~L~V~   97 (98)
T d1hnga1          88 LNKALDLRIL   97 (98)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             556777764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=3.6e-10  Score=79.13  Aligned_cols=43  Identities=30%  Similarity=0.325  Sum_probs=38.7

Q ss_pred             CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecCCC
Q psy12422        293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRSTPAA  335 (356)
Q Consensus       293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  335 (356)
                      ++..|+|.+|+.+|+|.|.|.+.+..|..++.+.|+|.+|+..
T Consensus        79 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          79 GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW  121 (126)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTTTT
T ss_pred             CeEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCCEE
Confidence            5679999999999999999999999999999999999986543

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=1.2e-10  Score=81.75  Aligned_cols=79  Identities=18%  Similarity=0.211  Sum_probs=56.8

Q ss_pred             CCceEEEEEeccCC---CCeeEEeeCCEEc-----------cc-----C--CeeEE---ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP---PPTVKWYKGNREL-----------SK-----R--DYSMS---YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p---~~~v~W~k~g~~l-----------~~-----~--~~~~~---~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|+|.|.+.+.+   ...+.|+|++...           ..     .  +....   ...+..+|+|.+++.+|+|.|
T Consensus        17 G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   96 (126)
T d1pkoa_          17 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGY   96 (126)
T ss_dssp             TSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhHCeEE
Confidence            89999999975322   3458999964321           10     0  11111   133568999999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEeccc
Q psy12422         57 KCVATNKHGTDETNCVVIVESEE   79 (356)
Q Consensus        57 ~C~a~n~~g~~~~~~~l~v~~~~   79 (356)
                      .|.+.+..+..+..+.|.|.++.
T Consensus        97 ~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          97 TCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             EEEEEETTEEEEEEEEEEEECTT
T ss_pred             EEEEEECCCEEEEEEEEEEeCCC
Confidence            99999999988889999998753

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=1.2e-09  Score=73.41  Aligned_cols=73  Identities=22%  Similarity=0.286  Sum_probs=50.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc-------------------CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK-------------------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~-------------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|.|.|.........+.|+|.......                   ..+.....++  +|+|.+++.+|+|.|+|.+.
T Consensus        14 G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng--SL~I~~v~~~D~G~Y~c~v~   91 (107)
T d1l6za1          14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG--SLLFQMITMKDMGVYTLDMT   91 (107)
T ss_dssp             TCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS--CEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc--cEEEcCCCchhCEEEEEEEE
Confidence            89999999854334568999995432110                   0122223444  89999999999999999998


Q ss_pred             eCC-ceeEEEEEEEE
Q psy12422         62 NKH-GTDETNCVVIV   75 (356)
Q Consensus        62 n~~-g~~~~~~~l~v   75 (356)
                      +.. +..++++.|.|
T Consensus        92 ~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          92 DENYRRTQATVRFHV  106 (107)
T ss_dssp             ETTEEECCCCEEECC
T ss_pred             ECCCCEEEEEEEEEE
Confidence            775 44555666655

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.6e-09  Score=70.64  Aligned_cols=71  Identities=21%  Similarity=0.298  Sum_probs=48.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCE--Ecc---------cC----CeeE---EecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNR--ELS---------KR----DYSM---SYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~--~l~---------~~----~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.........+.|++...  .+.         ..    +...   ....+.++|+|.+++.+|+|.|.|.+.+
T Consensus         9 G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~   88 (97)
T d2nxyb1           9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVED   88 (97)
T ss_dssp             TSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETT
T ss_pred             CCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEEEEec
Confidence            8999999998777677899998532  211         00    1111   1123456899999999999999999954


Q ss_pred             CCceeEEEEEEEE
Q psy12422         63 KHGTDETNCVVIV   75 (356)
Q Consensus        63 ~~g~~~~~~~l~v   75 (356)
                      .    ...+.|.|
T Consensus        89 ~----~~~v~L~V   97 (97)
T d2nxyb1          89 Q----KEEVQLLV   97 (97)
T ss_dssp             E----EEEEEEEE
T ss_pred             C----CeEEEEEC
Confidence            3    34455544

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.5e-09  Score=75.59  Aligned_cols=76  Identities=13%  Similarity=0.266  Sum_probs=53.1

Q ss_pred             CCceEEEEEeccCCC----CeeEEeeCCEE----------------ccc------CCeeEE---ecCCeEEEEEeeCCCC
Q psy12422          1 MQNVIKVKVGSTKPP----PTVKWYKGNRE----------------LSK------RDYSMS---YSDGVVSMEIIDCKPE   51 (356)
Q Consensus         1 g~~v~l~C~~~g~p~----~~v~W~k~g~~----------------l~~------~~~~~~---~~~~~~~L~i~~~~~~   51 (356)
                      |++|+|.|...+.+.    ..+.|++.+..                ...      ++....   ...+.++|+|.+++.+
T Consensus        19 G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   98 (124)
T d1eaja_          19 GETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLS   98 (124)
T ss_dssp             TSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCGG
T ss_pred             CCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEcccEEc
Confidence            899999999864433    25899972110                000      111111   1224568999999999


Q ss_pred             CCeEEEEEEEeCCceeEEEEEEEEe
Q psy12422         52 DSGEYKCVATNKHGTDETNCVVIVE   76 (356)
Q Consensus        52 D~G~Y~C~a~n~~g~~~~~~~l~v~   76 (356)
                      |+|.|.|.+.+..+.....+.|.|.
T Consensus        99 D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          99 DIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999998888888888875

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.4e-09  Score=73.21  Aligned_cols=39  Identities=31%  Similarity=0.480  Sum_probs=33.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy12422        293 GVASLQIQEVFPEDEGVYVCTATNSLGTAETKCKLTVRS  331 (356)
Q Consensus       293 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  331 (356)
                      +...|+|.+++.+|+|.|.|.+.+..|..+..+.|.|.+
T Consensus        86 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~V  124 (124)
T d1eaja_          86 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  124 (124)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEEC
Confidence            456799999999999999999999988888888888863

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.6e-09  Score=68.71  Aligned_cols=75  Identities=12%  Similarity=0.022  Sum_probs=51.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCcee--EEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD--ETNCVVIVE   76 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~--~~~~~l~v~   76 (356)
                      |++|+|.|... .+...+.|+|+|..................+.|.+++..|+|.|.|...+.....  +..+.|.|.
T Consensus        18 G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          18 EKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             TCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             CCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEEEEe
Confidence            89999999874 3356799999987543211111122334589999999999999999998765432  334566664

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=2e-09  Score=71.07  Aligned_cols=80  Identities=16%  Similarity=0.177  Sum_probs=54.0

Q ss_pred             eeecCCCeEEEEEEE-cCCC-CCeEEEEECCEEccC--CCceeEE-----EeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        199 KTIDDGQCLDLSAVV-KGDP-EPRVSWTKNGQPLNS--SNILDLK-----YKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~-~g~p-~p~i~W~~~g~~~~~--~~~~~~~-----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      +....|++++|.|.. .... ...|.|++++..+..  .......     .....++|.|.+++.+|+|.|+|++.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            456789999999964 2222 346999998877631  0000000     111224799999999999999999999999


Q ss_pred             ceE--EEEEEe
Q psy12422        270 TAE--TKCKLT  278 (356)
Q Consensus       270 ~~~--~~~~l~  278 (356)
                      ...  .++.|.
T Consensus        85 ~~~~~~~~~L~   95 (98)
T d1hnga1          85 TRILNKALDLR   95 (98)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            864  444443

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.74  E-value=5.6e-08  Score=63.36  Aligned_cols=63  Identities=21%  Similarity=0.344  Sum_probs=45.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---c---------ccCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---L---------SKRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l---------~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|...+.....+.|||.  |+.   |         ...++...  .....++|+|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            89999999987666678999982  211   1         11233332  3345679999999999999999988654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=3.9e-08  Score=67.56  Aligned_cols=77  Identities=22%  Similarity=0.346  Sum_probs=55.6

Q ss_pred             CeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc-------C---C------------CceeE-EEeCCE
Q psy12422        190 PQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN-------S---S------------NILDL-KYKNGV  244 (356)
Q Consensus       190 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~-------~---~------------~~~~~-~~~~~~  244 (356)
                      |.+...|..+.+.+|++++|.|.+.+...+.+.|++  .|..+.       .   .            .++.. ...+..
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~   81 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNK   81 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTE
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCE
Confidence            667777888899999999999999888788899997  222110       0   0            01111 122345


Q ss_pred             EEEEEccCCCCCCeEEEEEEEc
Q psy12422        245 ASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       245 ~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      .+|+|.+++.+|+|.|.|.+..
T Consensus        82 ~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          82 YVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eEEEEcccccCCCEEEEeeEeC
Confidence            7899999999999999998753

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.69  E-value=5.4e-08  Score=64.86  Aligned_cols=73  Identities=15%  Similarity=0.323  Sum_probs=53.4

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|....+.+|++++|.|.........+.|++  .|....            ...++.....+...+|+|.+++.+|+|.|
T Consensus         7 sP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (106)
T d1i8ka_           7 SPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDY   86 (106)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEE
Confidence            3556778999999999998766666799997  222111            12344445556678999999999999999


Q ss_pred             EEEEEcC
Q psy12422        261 VCTATNS  267 (356)
Q Consensus       261 ~C~a~n~  267 (356)
                      .|.+.+.
T Consensus        87 yCa~~~~   93 (106)
T d1i8ka_          87 YCLQSFN   93 (106)
T ss_dssp             EEEECSS
T ss_pred             eEecCcc
Confidence            9976543

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.69  E-value=7.3e-08  Score=64.24  Aligned_cols=63  Identities=22%  Similarity=0.290  Sum_probs=46.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--C-EE-c---------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--N-RE-L---------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g-~~-l---------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.........+.|||.  | .+ +         .  ..++.....+..++|+|.+++.+|+|.|.|.+.+.
T Consensus        15 G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~~~   92 (106)
T d1a0ql1          15 GGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCLQYYN   92 (106)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSS
T ss_pred             CCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEEEeCC
Confidence            89999999986665557999993  2 11 1         0  12445555667789999999999999999987543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.65  E-value=6.6e-08  Score=64.36  Aligned_cols=62  Identities=19%  Similarity=0.246  Sum_probs=45.7

Q ss_pred             CCceEEEEEeccCCCCeeEEee--CCEEc----c---------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK--GNREL----S---------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k--~g~~l----~---------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.........+.|||  .|+..    .         ..++........+.|+|.+++.+|+|.|.|.+.+
T Consensus        16 G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          16 GERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEecCc
Confidence            8999999998766666799998  23211    0         1233344455678999999999999999997654

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=6.8e-09  Score=69.63  Aligned_cols=75  Identities=15%  Similarity=0.105  Sum_probs=49.8

Q ss_pred             eecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC-------------------CceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        200 TIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-------------------NILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-------------------~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .+.+|+++.|.|.........+.|+|........                   .+..+   ...++|.|.+++.+|+|.|
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l---~~ngSL~I~~v~~~D~G~Y   86 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII---YSNGSLLFQMITMKDMGVY   86 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEE---CTTSCEEECSCCGGGCEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEE---cccccEEEcCCCchhCEEE
Confidence            3679999999997533335679999854322110                   01111   1124799999999999999


Q ss_pred             EEEEEcCCC-ceEEEEEE
Q psy12422        261 VCTATNSLG-TAETKCKL  277 (356)
Q Consensus       261 ~C~a~n~~g-~~~~~~~l  277 (356)
                      +|.+.+..+ ...+++.|
T Consensus        87 ~c~v~~~~~~~~~~~v~L  104 (107)
T d1l6za1          87 TLDMTDENYRRTQATVRF  104 (107)
T ss_dssp             EEEEEETTEEECCCCEEE
T ss_pred             EEEEEECCCCEEEEEEEE
Confidence            999987764 34444444

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.3e-08  Score=67.36  Aligned_cols=77  Identities=8%  Similarity=0.016  Sum_probs=47.7

Q ss_pred             CCceEEEEEe-ccCCCC--eeEEeeCCEEcccCCeeE-EecCC----eEEEEEeeCCCCCCeEEEEEEEeCCcee-----
Q psy12422          1 MQNVIKVKVG-STKPPP--TVKWYKGNRELSKRDYSM-SYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD-----   67 (356)
Q Consensus         1 g~~v~l~C~~-~g~p~~--~v~W~k~g~~l~~~~~~~-~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-----   67 (356)
                      |+.++|+|.+ .++|.+  .|+||++++.+....... ...++    ...|++.....+|...|+|+|+|..+..     
T Consensus        16 G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~~~~   95 (109)
T d1vcaa1          16 GKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPT   95 (109)
T ss_dssp             TSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCS
T ss_pred             CCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCcccccc
Confidence            7899999999 567865  689999999875321100 01111    2356665434444558999999875442     


Q ss_pred             --EEEEEEEEec
Q psy12422         68 --ETNCVVIVES   77 (356)
Q Consensus        68 --~~~~~l~v~~   77 (356)
                        +....|.|..
T Consensus        96 ~~~t~~~L~V~~  107 (109)
T d1vcaa1          96 VRQAVKELQVYI  107 (109)
T ss_dssp             EEEEEEECCEEC
T ss_pred             ccceeEEeEEEe
Confidence              3344566654

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.63  E-value=5.3e-08  Score=64.89  Aligned_cols=62  Identities=21%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|...+.....+.|||.  |+..             ...++.....+..++|+|.+++.+|+|.|.|.+.+
T Consensus        16 G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          16 GEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEecCc
Confidence            89999999986555567999983  3221             11244455556678999999999999999997654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.62  E-value=1e-07  Score=63.70  Aligned_cols=63  Identities=22%  Similarity=0.257  Sum_probs=46.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.....-...+.|||.  |+.+             ...++........+.|+|.+++.+|+|.|.|.+.+.
T Consensus        16 G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          16 GNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQANS   93 (107)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEEcCCC
Confidence            89999999986554567999983  2221             012455555666789999999999999999976543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.62  E-value=5.9e-08  Score=64.78  Aligned_cols=62  Identities=19%  Similarity=0.201  Sum_probs=46.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|...+.-...+.|||.  |+..             ...++.....+..+.|+|.+++.+|+|.|.|.+..
T Consensus        16 G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          16 GDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEeecc
Confidence            89999999986554557999992  2211             01345555566678999999999999999998754

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.62  E-value=8.4e-08  Score=63.72  Aligned_cols=63  Identities=24%  Similarity=0.353  Sum_probs=46.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|...+.....+.|||.  |+.+             ...++.....+..+.|+|.+++.+|+|.|.|.+.+.
T Consensus        13 G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   90 (103)
T d8faba1          13 GQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQAWDN   90 (103)
T ss_dssp             TSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEeeecCC
Confidence            89999999986554557899983  2211             012344555667789999999999999999987654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=9.2e-08  Score=63.05  Aligned_cols=74  Identities=9%  Similarity=0.004  Sum_probs=48.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEccc--CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeE--EEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE--TNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~--~~~~l~v   75 (356)
                      |++|+|.|.+. .+...+.|+|+|.....  .............+.|.+++.+|+|.|.|.+.+......  ..+.|.|
T Consensus        21 G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          21 DGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             TCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred             CCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCCCEEEEe
Confidence            79999999874 45668999997643221  110111122334789999999999999999988765332  2355544

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.61  E-value=1.3e-07  Score=63.12  Aligned_cols=73  Identities=19%  Similarity=0.273  Sum_probs=53.6

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEc------------cCCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPL------------NSSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|..+.+.+|++++|.|.........+.|++  .|..+            ....++..........|+|.+++.+|+|.|
T Consensus         7 ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1j1pl_           7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEE
Confidence            3456789999999999998665566799997  22221            112345555566778999999999999999


Q ss_pred             EEEEEcC
Q psy12422        261 VCTATNS  267 (356)
Q Consensus       261 ~C~a~n~  267 (356)
                      .|.+.+.
T Consensus        87 yCa~~~~   93 (107)
T d1j1pl_          87 FCQQANS   93 (107)
T ss_dssp             EEEECSS
T ss_pred             EEEcCCC
Confidence            9966543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.60  E-value=1.4e-07  Score=62.67  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=53.0

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|..+.+.+|++++|.|.........+.|++  .|....            ...+...........|.|.+++.+|+|.|
T Consensus         7 ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   86 (107)
T d1c5cl1           7 SPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEE
Confidence            3456788999999999998777777799998  232211            12234444456678999999999999999


Q ss_pred             EEEEEc
Q psy12422        261 VCTATN  266 (356)
Q Consensus       261 ~C~a~n  266 (356)
                      .|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1c5cl1          87 YCLQYA   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEecCc
Confidence            997654

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.59  E-value=7.9e-08  Score=65.23  Aligned_cols=63  Identities=25%  Similarity=0.425  Sum_probs=45.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---c----------ccCCeeE--EecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---L----------SKRDYSM--SYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l----------~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.....+...+.|||.  |..   |          ...++..  ......++|+|.+++.+|+|.|.|.+...
T Consensus        15 G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          15 GKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             TCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEEEEECS
T ss_pred             CCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccceeeecC
Confidence            78999999987666778999982  111   1          0112222  12345679999999999999999999764

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=1.4e-07  Score=62.85  Aligned_cols=72  Identities=19%  Similarity=0.288  Sum_probs=52.8

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEEC--C-EE-c----------cCCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--G-QP-L----------NSSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g-~~-~----------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|..+.+.+|++++|.|.........+.|++-  | .+ +          ....+.....+.....|+|.+++.+|+|.|
T Consensus         6 sP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Y   85 (106)
T d1a0ql1           6 SPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATY   85 (106)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeE
Confidence            34567889999999999987666667999981  1 11 1          012344455566678999999999999999


Q ss_pred             EEEEEc
Q psy12422        261 VCTATN  266 (356)
Q Consensus       261 ~C~a~n  266 (356)
                      .|.+.+
T Consensus        86 yCa~~~   91 (106)
T d1a0ql1          86 YCLQYY   91 (106)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            997643

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=2.1e-07  Score=62.00  Aligned_cols=63  Identities=22%  Similarity=0.322  Sum_probs=45.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---c-c---------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---L-S---------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l-~---------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|...+.....+.|||.  |+.   + .         ...+.....+..+.|+|.+++.+|+|.|.|.+.+.
T Consensus        16 G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          16 GETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHNE   93 (108)
T ss_dssp             TSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEECSS
T ss_pred             CCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEeeCCC
Confidence            89999999986655667999982  211   1 0         12344455666789999999999999999976543

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=2.6e-07  Score=61.76  Aligned_cols=72  Identities=18%  Similarity=0.256  Sum_probs=53.1

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|....+.+|++++|.|.........+.|++-  +....            ...+...........|+|.+++.+|+|.|
T Consensus         7 sP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Y   86 (107)
T d1kcvl1           7 SPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADY   86 (107)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceE
Confidence            34567899999999999997666667999972  21110            12344455566778999999999999999


Q ss_pred             EEEEEc
Q psy12422        261 VCTATN  266 (356)
Q Consensus       261 ~C~a~n  266 (356)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1kcvl1          87 YCGQSY   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            997643

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.6e-07  Score=61.30  Aligned_cols=63  Identities=19%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             CCceEEEEEeccC--CCCeeEEeeCC--EE---c-c---------cCCeeE--EecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTK--PPPTVKWYKGN--RE---L-S---------KRDYSM--SYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~--p~~~v~W~k~g--~~---l-~---------~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|.....  ....+.|||..  ..   + .         ..+...  ....+.++|+|.+++.+|+|.|.|.+.
T Consensus        11 G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v~   90 (108)
T d1hkfa_          11 GQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIY   90 (108)
T ss_dssp             TCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEEe
Confidence            8999999987432  22357899832  11   1 0         112222  235677899999999999999999987


Q ss_pred             eC
Q psy12422         62 NK   63 (356)
Q Consensus        62 n~   63 (356)
                      ..
T Consensus        91 ~~   92 (108)
T d1hkfa_          91 RP   92 (108)
T ss_dssp             CT
T ss_pred             cC
Confidence            54

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.58  E-value=9.8e-08  Score=63.68  Aligned_cols=73  Identities=16%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|...++.+|++++|.|...+.....+.|++  .|....            ...++.....+....|+|.+++.+|+|.|
T Consensus         7 sP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1ospl1           7 SSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATY   86 (107)
T ss_dssp             CCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEE
T ss_pred             eCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcE
Confidence            3456789999999999998766656799998  222111            12234444445568999999999999999


Q ss_pred             EEEEEcC
Q psy12422        261 VCTATNS  267 (356)
Q Consensus       261 ~C~a~n~  267 (356)
                      .|.+...
T Consensus        87 yCa~~~~   93 (107)
T d1ospl1          87 FCQQYWS   93 (107)
T ss_dssp             EEEECSS
T ss_pred             EEeeccC
Confidence            9976543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.58  E-value=2.1e-07  Score=61.91  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=45.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CE---Ecc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NR---ELS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~---~l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|...+.-...+.|||.  |+   .+.          ..++.....+..+.|+|.+++.+|+|.|.|.+..
T Consensus        15 G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          15 GDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             TCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred             CCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeeeeCC
Confidence            89999999986554556899993  21   110          1244555566778999999999999999998754

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.58  E-value=1.6e-07  Score=63.52  Aligned_cols=76  Identities=21%  Similarity=0.404  Sum_probs=52.6

Q ss_pred             ccCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEE--eCCEEEEEEccCCCCCC
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKY--KNGVASLQIQEVFPEDE  257 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~--~~~~~~L~i~~v~~~d~  257 (356)
                      ..|..+.+.+|++++|.|...+.....+.|+|  .|....            ...+.....  ......|.|.+++.+|+
T Consensus         5 Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   84 (113)
T d2bnqd1           5 QIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDS   84 (113)
T ss_dssp             CSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             eeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCC
Confidence            34566789999999999999776666799998  221110            011111111  24457899999999999


Q ss_pred             eEEEEEEEcCCC
Q psy12422        258 GVYVCTATNSLG  269 (356)
Q Consensus       258 G~Y~C~a~n~~g  269 (356)
                      |.|.|.+....+
T Consensus        85 g~YyCa~~~~~~   96 (113)
T d2bnqd1          85 ATYLCAVRPTSG   96 (113)
T ss_dssp             EEEEEEEEESSS
T ss_pred             cEEeEeEecCCC
Confidence            999998875544

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=4.4e-08  Score=67.36  Aligned_cols=76  Identities=13%  Similarity=0.042  Sum_probs=47.4

Q ss_pred             CCceEEEEEecc----CCCCeeEEeeC--CE----Ec---------cc------CCeeE--EecCCeEEEEEeeCCCCCC
Q psy12422          1 MQNVIKVKVGST----KPPPTVKWYKG--NR----EL---------SK------RDYSM--SYSDGVVSMEIIDCKPEDS   53 (356)
Q Consensus         1 g~~v~l~C~~~g----~p~~~v~W~k~--g~----~l---------~~------~~~~~--~~~~~~~~L~i~~~~~~D~   53 (356)
                      |++|+|.|....    .....+.|+|.  +.    .+         ..      .+...  ....+.++|+|.+++.+|+
T Consensus        14 G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   93 (119)
T d1neua_          14 GSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDN   93 (119)
T ss_dssp             TSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGGGC
T ss_pred             CCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCCChHHC
Confidence            899999998742    22347899882  11    11         00      01111  1123456899999999999


Q ss_pred             eEEEEEEEeCC--ceeEEEEEEEEe
Q psy12422         54 GEYKCVATNKH--GTDETNCVVIVE   76 (356)
Q Consensus        54 G~Y~C~a~n~~--g~~~~~~~l~v~   76 (356)
                      |.|.|.+.+..  ......+.|.|.
T Consensus        94 G~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          94 GTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999998753  333455667664

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.58  E-value=1.4e-07  Score=63.47  Aligned_cols=63  Identities=13%  Similarity=0.151  Sum_probs=43.4

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeC--CEEc----c---------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKG--NREL----S---------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~--g~~l----~---------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|...+. ....+.|||.  |+..    .         ..+......+..+.|+|.+++.+|+|.|.|.+...
T Consensus        13 G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   91 (110)
T d2esvd1          13 GRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVVRS   91 (110)
T ss_dssp             TSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEEEEES
T ss_pred             CCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEEEeCC
Confidence            8999999997543 3456899983  2211    0         01122333456779999999999999999988643

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.58  E-value=9.9e-08  Score=63.67  Aligned_cols=62  Identities=23%  Similarity=0.303  Sum_probs=45.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---c----------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---L----------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l----------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.....-...+.|||.  |+.   |          ...++.....+..+.|+|.+++.+|+|.|.|.+..
T Consensus        16 G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          16 GNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             TSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEeECC
Confidence            89999999975544456999982  221   1          01344555556778999999999999999997653

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.58  E-value=2e-07  Score=62.00  Aligned_cols=72  Identities=13%  Similarity=0.194  Sum_probs=53.2

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|....+.+|++++|.|.....-...+.|++-  |....            ...++....++....|.|.+++.+|+|.|
T Consensus         6 ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   85 (106)
T d1op3k1           6 SPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATY   85 (106)
T ss_dssp             ECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEE
T ss_pred             cCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcE
Confidence            35667899999999999987655667999972  21111            12244455566778999999999999999


Q ss_pred             EEEEEc
Q psy12422        261 VCTATN  266 (356)
Q Consensus       261 ~C~a~n  266 (356)
                      .|.+..
T Consensus        86 yCa~~~   91 (106)
T d1op3k1          86 HCQHYA   91 (106)
T ss_dssp             EEEEEC
T ss_pred             eeeeCC
Confidence            997654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.3e-08  Score=65.89  Aligned_cols=69  Identities=19%  Similarity=0.381  Sum_probs=47.5

Q ss_pred             eeecCCCeEEEEEEEcCCCCCeEEEEECCE--EccCCC------------ceeEE---EeCCEEEEEEccCCCCCCeEEE
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEPRVSWTKNGQ--PLNSSN------------ILDLK---YKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~--~~~~~~------------~~~~~---~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      +...+|++++|.|.........+.|++...  .+....            ++...   ...+..+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            467899999999998776777899998432  111110            11110   0123457999999999999999


Q ss_pred             EEEEcC
Q psy12422        262 CTATNS  267 (356)
Q Consensus       262 C~a~n~  267 (356)
                      |.+.+.
T Consensus        84 C~v~~~   89 (97)
T d2nxyb1          84 CEVEDQ   89 (97)
T ss_dssp             EEETTE
T ss_pred             EEEecC
Confidence            999664

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.57  E-value=1.6e-07  Score=62.65  Aligned_cols=62  Identities=23%  Similarity=0.335  Sum_probs=45.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---c--------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---L--------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l--------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.....-...+.|||.  |+.   |        .  ..++.....+..+.|+|.+++.+|+|.|.|.+.+
T Consensus        16 G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          16 GDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLH   92 (107)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEEECc
Confidence            89999999986554568999992  221   1        0  1234445566778999999999999999997643

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=3.2e-07  Score=62.06  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=43.7

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeC--CE-E--c-----------ccCCeeEEe--cCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKG--NR-E--L-----------SKRDYSMSY--SDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~--g~-~--l-----------~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|...+. ....+.|||.  |+ +  +           ...++....  ....+.|+|.+++.+|+|.|.|.+.
T Consensus        14 G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~   93 (114)
T d3bp5a1          14 GANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAI   93 (114)
T ss_dssp             TCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEEEEEEE
Confidence            8999999998543 3456899982  22 1  1           112343332  3345789999999999999999886


Q ss_pred             eC
Q psy12422         62 NK   63 (356)
Q Consensus        62 n~   63 (356)
                      ..
T Consensus        94 ~~   95 (114)
T d3bp5a1          94 SL   95 (114)
T ss_dssp             CS
T ss_pred             eC
Confidence            54

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.56  E-value=2.2e-07  Score=61.89  Aligned_cols=72  Identities=18%  Similarity=0.227  Sum_probs=51.8

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|....+.+|++++|.|.....-...+.|++  .|....            ...++.....+....|+|.+++.+|+|+|
T Consensus         7 ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~Y   86 (107)
T d1mexl1           7 SQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEY   86 (107)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeE
Confidence            3455678999999999998666556799997  221110            12334444556678899999999999999


Q ss_pred             EEEEEc
Q psy12422        261 VCTATN  266 (356)
Q Consensus       261 ~C~a~n  266 (356)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1mexl1          87 FCQQYN   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEeECC
Confidence            997653

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.7e-07  Score=63.46  Aligned_cols=75  Identities=24%  Similarity=0.360  Sum_probs=52.6

Q ss_pred             cccCCceeecCCCeEEEEEEEcCC-CCCeEEEEEC--C-EE-----cc------------CCCceeEEEeCCEEEEEEcc
Q psy12422        193 ANKLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKN--G-QP-----LN------------SSNILDLKYKNGVASLQIQE  251 (356)
Q Consensus       193 ~~~~~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~~--g-~~-----~~------------~~~~~~~~~~~~~~~L~i~~  251 (356)
                      ...|.+.++.+|++++|.|.+... ....+.|+|-  | .+     +.            ...++..........|+|.+
T Consensus         4 ~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~   83 (114)
T d1akjd_           4 RVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSD   83 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESS
T ss_pred             eECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEcc
Confidence            345566789999999999998543 3456999981  1 11     00            01233444556667899999


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy12422        252 VFPEDEGVYVCTATNS  267 (356)
Q Consensus       252 v~~~d~G~Y~C~a~n~  267 (356)
                      ++.+|+|.|.|.+...
T Consensus        84 l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          84 FRRENEGYYFCSALSN   99 (114)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CCCCCCEEEeEeEcCC
Confidence            9999999999987643

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=2.6e-07  Score=61.57  Aligned_cols=69  Identities=20%  Similarity=0.312  Sum_probs=50.8

Q ss_pred             CceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEc---c---------CCCceeEEEeCCEEEEEEccCCCCCCeEEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPL---N---------SSNILDLKYKNGVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~---~---------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      ..+.+.+|++++|.|...+.....+.|++  .|...   .         ...++....++....|.|.+++.+|+|.|.|
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC   87 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC   87 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccc
Confidence            34678999999999999766666799997  22111   0         1234445556667899999999999999999


Q ss_pred             EEE
Q psy12422        263 TAT  265 (356)
Q Consensus       263 ~a~  265 (356)
                      .+.
T Consensus        88 a~~   90 (106)
T d1lk3l1          88 QQS   90 (106)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            554

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=8.7e-08  Score=63.18  Aligned_cols=81  Identities=9%  Similarity=-0.002  Sum_probs=56.1

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCC-CceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSS-NILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      ..+|.+...+.. .|..|++|+|.|.+. .+...+.|+|+|...... .............+.|.+++.+|+|.|.|...
T Consensus         5 lpkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~   82 (99)
T d1ucta1           5 FPMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   82 (99)
T ss_dssp             SCCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEE
Confidence            566888877765 588999999999875 456679999976422111 11111112233479999999999999999998


Q ss_pred             cCCC
Q psy12422        266 NSLG  269 (356)
Q Consensus       266 n~~g  269 (356)
                      +...
T Consensus        83 ~~~~   86 (99)
T d1ucta1          83 IGHY   86 (99)
T ss_dssp             ETTT
T ss_pred             CCCc
Confidence            8655

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.55  E-value=3.5e-07  Score=61.06  Aligned_cols=62  Identities=19%  Similarity=0.299  Sum_probs=46.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---c--------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---L--------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l--------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.........+.|||.  |+.   +        .  ..++........+.|+|.+++.+|+|.|.|.+..
T Consensus        16 G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          16 GEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEEecC
Confidence            89999999986655567999983  211   1        0  1234455566778999999999999999998643

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1e-07  Score=64.13  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=51.2

Q ss_pred             CCeecccCCceeecCCCeEEEEEEE-cCCCCC--eEEEEECCEEccCCCceeEE-EeCC---EEEEEEccCCCCCCeEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVV-KGDPEP--RVSWTKNGQPLNSSNILDLK-YKNG---VASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p--~i~W~~~g~~~~~~~~~~~~-~~~~---~~~L~i~~v~~~d~G~Y~  261 (356)
                      .|.+....   .+.+|+.++|.|.+ .++|.+  .|.|++++..+......... ..+.   .+.|++.....++...|+
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~lt   80 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLV   80 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEE
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEE
Confidence            45554432   47899999999999 457855  58999999887532111000 0011   245777655555666999


Q ss_pred             EEEEcCCCc
Q psy12422        262 CTATNSLGT  270 (356)
Q Consensus       262 C~a~n~~g~  270 (356)
                      |+|.|..+.
T Consensus        81 C~a~~~~~~   89 (109)
T d1vcaa1          81 CRAKLHIDE   89 (109)
T ss_dssp             EEEEECSCC
T ss_pred             EEEEcCcCC
Confidence            999998764

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.54  E-value=3.4e-07  Score=60.95  Aligned_cols=73  Identities=16%  Similarity=0.279  Sum_probs=51.9

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|..+.+.+|++++|.|.........+.|++  .|....            .........++....|+|.+++.+|+|.|
T Consensus         7 ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Y   86 (108)
T d1jhll_           7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMY   86 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEE
T ss_pred             cCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEE
Confidence            3456788999999999999766666799997  221110            11223344455667899999999999999


Q ss_pred             EEEEEcC
Q psy12422        261 VCTATNS  267 (356)
Q Consensus       261 ~C~a~n~  267 (356)
                      .|.+.+.
T Consensus        87 yCA~~~~   93 (108)
T d1jhll_          87 ICQQHNE   93 (108)
T ss_dssp             EEEECSS
T ss_pred             EEeeCCC
Confidence            9965543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=2.6e-07  Score=61.63  Aligned_cols=63  Identities=22%  Similarity=0.297  Sum_probs=46.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---c--------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---L--------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l--------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.........+.|||.  |..   +        .  ..++.....+..+.|+|.+++.+|+|.|.|.+...
T Consensus        16 G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1d5il1          16 GERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYDE   93 (107)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEeeeccC
Confidence            89999999986655667899983  221   1        0  12454555566789999999999999999976543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=2.1e-07  Score=62.02  Aligned_cols=71  Identities=17%  Similarity=0.222  Sum_probs=51.8

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEc------------cCCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPL------------NSSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|..+.+.+|++++|.|.........+.|++  .|..+            ....++..........|.|.+++.+|+|.|
T Consensus         7 sP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d3cx5k1           7 TPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATY   86 (107)
T ss_dssp             ESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEE
T ss_pred             cCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcE
Confidence            3455678999999999998777666799997  22111            012233444556678999999999999999


Q ss_pred             EEEEE
Q psy12422        261 VCTAT  265 (356)
Q Consensus       261 ~C~a~  265 (356)
                      .|.+.
T Consensus        87 yCa~~   91 (107)
T d3cx5k1          87 FCQHH   91 (107)
T ss_dssp             EEEEC
T ss_pred             EeeeC
Confidence            99654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.53  E-value=3.6e-07  Score=59.81  Aligned_cols=62  Identities=11%  Similarity=0.106  Sum_probs=45.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|... .+...+.|+|+|................+.+.|..+...|+|.|+|.....
T Consensus        20 G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          20 GENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             TCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            78999999874 346689999998755422222234455567788888899999999987654

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.4e-07  Score=61.42  Aligned_cols=79  Identities=8%  Similarity=-0.013  Sum_probs=55.9

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      .+|.+...+.. .|..|++|+|.|... .+...+.|+|+|......... ....+....+.|.+++..|+|.|.|...+.
T Consensus         3 PKPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1           3 PKPFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEc-cCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            46777777755 478999999999875 345679999988654321100 011223468999999999999999998765


Q ss_pred             CC
Q psy12422        268 LG  269 (356)
Q Consensus       268 ~g  269 (356)
                      ..
T Consensus        80 ~~   81 (95)
T d1olla1          80 EL   81 (95)
T ss_dssp             TE
T ss_pred             CC
Confidence            43

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.3e-07  Score=64.01  Aligned_cols=63  Identities=16%  Similarity=0.187  Sum_probs=44.8

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeCC----E-Ec---c-------------cCCeeEEecCCeEEEEEeeCCCCCCeEEEE
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKGN----R-EL---S-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKC   58 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~g----~-~l---~-------------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   58 (356)
                      |++|+|.|...+ .....+.|||..    . .+   .             ..++.....+..+.|+|.+++.+|+|.|.|
T Consensus        15 G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~Dsg~YyC   94 (114)
T d1akjd_          15 GETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFC   94 (114)
T ss_dssp             TCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCCCEEEeE
Confidence            899999999854 334568999921    1 11   0             123444555667799999999999999999


Q ss_pred             EEEeC
Q psy12422         59 VATNK   63 (356)
Q Consensus        59 ~a~n~   63 (356)
                      .+...
T Consensus        95 a~~~~   99 (114)
T d1akjd_          95 SALSN   99 (114)
T ss_dssp             EEEET
T ss_pred             eEcCC
Confidence            88643

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=5.9e-08  Score=64.95  Aligned_cols=63  Identities=16%  Similarity=0.287  Sum_probs=43.9

Q ss_pred             CCceEEEEEeccCC----CCeeEEeeCCEEccc------------CCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKP----PPTVKWYKGNRELSK------------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p----~~~v~W~k~g~~l~~------------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++++|.|......    ...+.|.+++..+..            ..+......+.++|+|.+++.+|+|.|.|.+.+.
T Consensus         9 G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~V~~~   87 (105)
T d1dr9a1           9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKY   87 (105)
T ss_dssp             TSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             CCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEEEEeC
Confidence            89999999874322    135788887765421            0111223345669999999999999999999765

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.52  E-value=1.9e-07  Score=61.92  Aligned_cols=70  Identities=20%  Similarity=0.325  Sum_probs=51.1

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      .+++.+|++++|.|.........+.|++  .|....            ...+.....+.....|.|.+++.+|+|.|.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            4678999999999998665556789998  222111            12234445566678999999999999999997


Q ss_pred             EEcC
Q psy12422        264 ATNS  267 (356)
Q Consensus       264 a~n~  267 (356)
                      +.+.
T Consensus        87 ~~~~   90 (103)
T d8faba1          87 AWDN   90 (103)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            6643

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.52  E-value=3.2e-07  Score=61.13  Aligned_cols=73  Identities=18%  Similarity=0.242  Sum_probs=53.2

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|....+.+|++++|.|.........+.|++  .+....            ...++.....+....|.|.+++.+|+|.|
T Consensus         7 ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1d5il1           7 SPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEE
Confidence            3456788999999999998766666789987  221110            12344455566678999999999999999


Q ss_pred             EEEEEcC
Q psy12422        261 VCTATNS  267 (356)
Q Consensus       261 ~C~a~n~  267 (356)
                      .|.+.+.
T Consensus        87 yCa~~~~   93 (107)
T d1d5il1          87 YCLQYDE   93 (107)
T ss_dssp             EEEECSS
T ss_pred             EeeeccC
Confidence            9976543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.2e-07  Score=64.75  Aligned_cols=78  Identities=15%  Similarity=0.112  Sum_probs=50.6

Q ss_pred             CCceEEEEEeccC---CCCeeEEeeCC--EEc----c---------cCCee--EEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTK---PPPTVKWYKGN--REL----S---------KRDYS--MSYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~---p~~~v~W~k~g--~~l----~---------~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|.....   ....+.|||..  ..+    .         ..+..  .....+.++|+|.+++.+|+|.|.|.+
T Consensus        14 G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v   93 (116)
T d1xeda_          14 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGL   93 (116)
T ss_dssp             TCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCEEEEEEE
Confidence            8999999987432   12357899842  111    0         11222  234556789999999999999999998


Q ss_pred             EeCCceeEEEEEEEEecc
Q psy12422         61 TNKHGTDETNCVVIVESE   78 (356)
Q Consensus        61 ~n~~g~~~~~~~l~v~~~   78 (356)
                      ..........+.|.|.+.
T Consensus        94 ~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          94 GINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             SCGGGCCEEEEEEEEECC
T ss_pred             EcCCCCceEeEEEEEECC
Confidence            654333445577777643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.51  E-value=1.1e-07  Score=63.42  Aligned_cols=61  Identities=23%  Similarity=0.298  Sum_probs=45.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-----------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-----------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-----------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|.........+.|||.  |+..           .  ..++........++|+|.+++.+|+|.|.|.+.
T Consensus        16 G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          16 GDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             SSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             CCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEeeeC
Confidence            89999999987666667999982  2211           0  123444455667899999999999999999764

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.51  E-value=1.6e-07  Score=63.71  Aligned_cols=75  Identities=19%  Similarity=0.248  Sum_probs=52.0

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEcc-------C-----CCceeEE--EeCCEEEEEEccCCCCCCe
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLN-------S-----SNILDLK--YKNGVASLQIQEVFPEDEG  258 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~-------~-----~~~~~~~--~~~~~~~L~i~~v~~~d~G  258 (356)
                      .|..+.+.+|++++|.|.....+...+.|++-  +....       .     ..++...  ......+|+|.+++.+|+|
T Consensus         6 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg   85 (114)
T d2cdea1           6 SPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSA   85 (114)
T ss_dssp             ECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCS
T ss_pred             eCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCc
Confidence            34567899999999999997767778999972  11110       0     0111111  1234578999999999999


Q ss_pred             EEEEEEEcCCC
Q psy12422        259 VYVCTATNSLG  269 (356)
Q Consensus       259 ~Y~C~a~n~~g  269 (356)
                      .|.|.+....+
T Consensus        86 ~Y~Ca~~~~~~   96 (114)
T d2cdea1          86 SYICVVSDRGS   96 (114)
T ss_dssp             EEEEEEECSCT
T ss_pred             ccceeeecCCC
Confidence            99999887533

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.51  E-value=5e-07  Score=60.48  Aligned_cols=71  Identities=14%  Similarity=0.230  Sum_probs=52.0

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEc------------cCCCceeEEEeCCEEEEEEccCCCCCCeEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPL------------NSSNILDLKYKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      |..+.+.+|++++|.|...+.-...+.|++  .|...            ....++....++....|+|.+++.+|+|.|.
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Yy   89 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYY   89 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEE
Confidence            456689999999999999776566789997  22111            0123444455566788999999999999999


Q ss_pred             EEEEc
Q psy12422        262 CTATN  266 (356)
Q Consensus       262 C~a~n  266 (356)
                      |.+..
T Consensus        90 CA~~~   94 (109)
T d1bwwa_          90 CQQYQ   94 (109)
T ss_dssp             EEECS
T ss_pred             EeecC
Confidence            97654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.51  E-value=3.6e-07  Score=60.94  Aligned_cols=63  Identities=19%  Similarity=0.324  Sum_probs=46.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---c----------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---L----------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l----------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.........+.|||.  |+.   |          ...++.....+..+.|.|.+++.+|+|.|.|.+...
T Consensus        15 G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          15 GQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             TSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEecCC
Confidence            89999999975444457999983  221   1          012344555667789999999999999999988654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.51  E-value=5.3e-07  Score=60.61  Aligned_cols=63  Identities=30%  Similarity=0.427  Sum_probs=45.5

Q ss_pred             CCceEEEEEeccC--CCCeeEEeeC--CEE---cc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTK--PPPTVKWYKG--NRE---LS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~--p~~~v~W~k~--g~~---l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|...+.  ....+.|||.  |+.   +.          ..++.....+..+.|.|.+++.+|+|.|.|.+...
T Consensus        15 G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~~~~   94 (114)
T d2rhea_          15 GQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYCAAWND   94 (114)
T ss_dssp             TCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEEeecCC
Confidence            8999999998543  3456899983  211   10          12344445566789999999999999999988653

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=7.2e-07  Score=57.90  Aligned_cols=84  Identities=18%  Similarity=0.308  Sum_probs=55.9

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcC-CCCCeEEEEECCEEccCCCceeEEEeC-C----EEEEEEccCCCCCCeEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKG-DPEPRVSWTKNGQPLNSSNILDLKYKN-G----VASLQIQEVFPEDEGVY  260 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~-~----~~~L~i~~v~~~d~G~Y  260 (356)
                      +.+|.+...    ....|+.++|.|.+.| +|.+.|.|++||..+............ +    .+.|.+.   ..+...|
T Consensus         3 f~~P~V~~~----~~~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~   75 (95)
T d1dr9a2           3 FPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSF   75 (95)
T ss_dssp             CCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEE
T ss_pred             CCCCEEEec----ccCCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceE
Confidence            345665432    2335788999999965 798999999999888754433322221 2    1345554   4456799


Q ss_pred             EEEEEcCCCceEEEEEE
Q psy12422        261 VCTATNSLGTAETKCKL  277 (356)
Q Consensus       261 ~C~a~n~~g~~~~~~~l  277 (356)
                      +|.+.+..-.....+..
T Consensus        76 tC~V~h~~l~~~~~~~w   92 (95)
T d1dr9a2          76 MCLIKYGHLRVNQTFNW   92 (95)
T ss_dssp             EEEEEETTCCEEEEEEE
T ss_pred             EEEEEecCCCCcEEEEc
Confidence            99999988776665544

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=2e-07  Score=63.92  Aligned_cols=62  Identities=15%  Similarity=0.173  Sum_probs=44.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE------c---cc--------------CCeeE-EecCCeEEEEEeeCCCCCCe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE------L---SK--------------RDYSM-SYSDGVVSMEIIDCKPEDSG   54 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~------l---~~--------------~~~~~-~~~~~~~~L~i~~~~~~D~G   54 (356)
                      ||+|+|.|.+.+.....+.|||.  |+.      +   ..              .++.. ...+..++|+|.+++.+|+|
T Consensus        16 G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~~~~Dsg   95 (122)
T d1nezg_          16 GQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEG   95 (122)
T ss_dssp             TCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSCCGGGCE
T ss_pred             CCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEcccccCCCE
Confidence            89999999997777778999982  221      1   00              01111 22345578999999999999


Q ss_pred             EEEEEEEe
Q psy12422         55 EYKCVATN   62 (356)
Q Consensus        55 ~Y~C~a~n   62 (356)
                      .|.|.+..
T Consensus        96 ~YyCa~~~  103 (122)
T d1nezg_          96 YYFCSVIS  103 (122)
T ss_dssp             EEEEEEEE
T ss_pred             EEEeeEeC
Confidence            99998753

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.49  E-value=4.5e-07  Score=60.58  Aligned_cols=71  Identities=18%  Similarity=0.326  Sum_probs=51.7

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEE---c-c--------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQP---L-N--------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~---~-~--------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|..+.+.+|++++|.|.........+.|++  .|..   + .        ...++..........|.|.+++.+|+|.|
T Consensus         7 sP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Y   86 (109)
T d1mqkl_           7 TPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSY   86 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeE
Confidence            3556788999999999998766566799998  2221   1 0        11234444456678999999999999999


Q ss_pred             EEEEE
Q psy12422        261 VCTAT  265 (356)
Q Consensus       261 ~C~a~  265 (356)
                      .|.+.
T Consensus        87 yCA~~   91 (109)
T d1mqkl_          87 YCQHH   91 (109)
T ss_dssp             EEEEC
T ss_pred             EEeee
Confidence            99765

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.49  E-value=2.1e-07  Score=60.90  Aligned_cols=86  Identities=16%  Similarity=0.200  Sum_probs=52.0

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCC-C-CCeEEEEECCEEccCCCcee-E--EEeCCEEEEEEccCCCCCCeEEEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGD-P-EPRVSWTKNGQPLNSSNILD-L--KYKNGVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p-~p~i~W~~~g~~~~~~~~~~-~--~~~~~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      ||.+.+.+.. .+..|+.++|.|.+.|+ | ...|+|++||..+..+.... .  ..++.........+..++.+.|+|+
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   81 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCK   81 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEE
Confidence            4555443322 35568899999999886 4 34699999998886432211 1  1112222333334455677899999


Q ss_pred             EEcCCCceEEEE
Q psy12422        264 ATNSLGTAETKC  275 (356)
Q Consensus       264 a~n~~g~~~~~~  275 (356)
                      +.+..-......
T Consensus        82 V~H~sl~~pi~~   93 (100)
T d1muja1          82 VEHWGLEEPVLK   93 (100)
T ss_dssp             EECTTSSSCEEE
T ss_pred             EEECCCCCceee
Confidence            998765443333

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.49  E-value=4.3e-07  Score=60.52  Aligned_cols=73  Identities=15%  Similarity=0.276  Sum_probs=53.2

Q ss_pred             ccCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEc------------cCCCceeEEEeCCEEEEEEccCCCCCCeE
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPL------------NSSNILDLKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      -.|....+.+|++++|.|.........+.|++  .|..+            ....++....+.....|+|.+++.+|+|.
T Consensus         6 Q~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~   85 (107)
T d1tjgl1           6 QSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFAT   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCce
Confidence            34566789999999999999765567789998  22211            11234444556667899999999999999


Q ss_pred             EEEEEEc
Q psy12422        260 YVCTATN  266 (356)
Q Consensus       260 Y~C~a~n  266 (356)
                      |.|.+.+
T Consensus        86 YyCa~~~   92 (107)
T d1tjgl1          86 YYCQQLH   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEECc
Confidence            9996543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=5.5e-07  Score=60.09  Aligned_cols=63  Identities=17%  Similarity=0.169  Sum_probs=45.1

Q ss_pred             CCceEEEEEeccCCC---CeeEEee---CCEEc----------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPP---PTVKWYK---GNREL----------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~---~~v~W~k---~g~~l----------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|...+...   -.+.|||   +..+.          +  .+++.....+..+.|.|.+++.+|+|.|.|.+..
T Consensus        15 G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          15 GETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             TCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEEEEccc
Confidence            799999999854322   2389998   22221          0  1345555566778999999999999999998765


Q ss_pred             C
Q psy12422         63 K   63 (356)
Q Consensus        63 ~   63 (356)
                      .
T Consensus        95 ~   95 (110)
T d1oaql_          95 S   95 (110)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.48  E-value=5.7e-07  Score=60.42  Aligned_cols=63  Identities=22%  Similarity=0.308  Sum_probs=44.9

Q ss_pred             CCceEEEEEeccC--CCCeeEEeeC--CEE---cc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTK--PPPTVKWYKG--NRE---LS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~--p~~~v~W~k~--g~~---l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|...+.  ....+.|||.  |+.   |.          ..++.....+..++|+|.+++.+|+|.|.|.+...
T Consensus        15 G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          15 GQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             TSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             CCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceEEeecCC
Confidence            7999999987543  2345899983  211   10          12344455566789999999999999999988654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.48  E-value=1.1e-07  Score=64.51  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=44.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---c-c---------cCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---L-S---------KRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l-~---------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.........+.|||.  |+.   + .         ..++...  ..+..+.|+|.+++.+|+|.|.|.+...
T Consensus        16 G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          16 GLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLA   95 (115)
T ss_dssp             TSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEEC
T ss_pred             CCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceEEEEcC
Confidence            79999999987666678999983  211   1 0         1122221  2334567999999999999999988654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=1.7e-07  Score=62.48  Aligned_cols=61  Identities=18%  Similarity=0.262  Sum_probs=45.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--C---EEcc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--N---RELS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g---~~l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|...+.-...+.|||.  |   +.+.          ..++.....+..+.|.|.+++.+|+|.|.|.+.
T Consensus        15 G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          15 GEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             TSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccccc
Confidence            89999999996655567999983  2   1111          124555556677899999999999999999654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.9e-07  Score=59.84  Aligned_cols=60  Identities=12%  Similarity=0.062  Sum_probs=43.9

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.....+.-.+.|+|+|......   .........+.|.+++.+|+|.|+|.....
T Consensus        19 G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~---~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          19 GENISLTCSSAHIPFDRFSLAKEGELSLPQ---HQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             TCCCEEEEECSSSCCSEEEEEETTCSSCCS---EEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCeEEEEEeCCCCCceEEEEEECCcccceE---EcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            789999998633334578999999644322   112234458999999999999999998654

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.47  E-value=3.4e-07  Score=61.26  Aligned_cols=72  Identities=19%  Similarity=0.301  Sum_probs=51.6

Q ss_pred             cCCceeecCCCeEEEEEEEcCCC-CCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDP-EPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      .|....+.+|++++|.|...... ...+.|++  .|....            ...++....+.....|.|.+++.+|+|.
T Consensus         7 ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~   86 (108)
T d2fx7l1           7 SPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAV   86 (108)
T ss_dssp             SSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             eCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEE
Confidence            35567899999999999986543 44589998  232111            1224444555667899999999999999


Q ss_pred             EEEEEEc
Q psy12422        260 YVCTATN  266 (356)
Q Consensus       260 Y~C~a~n  266 (356)
                      |.|.+.+
T Consensus        87 YyCa~~~   93 (108)
T d2fx7l1          87 YYCQQYG   93 (108)
T ss_dssp             EEEEECS
T ss_pred             EeeecCC
Confidence            9997653

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.46  E-value=2.8e-07  Score=61.71  Aligned_cols=62  Identities=21%  Similarity=0.247  Sum_probs=44.2

Q ss_pred             CCceEEEEEeccC-CCCeeEEeeC--CE---Ecc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTK-PPPTVKWYKG--NR---ELS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~~~v~W~k~--g~---~l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|...+. ....+.|||.  |+   .|-          ..++.....+..+.|+|.+++.+|+|.|.|.+.+
T Consensus        16 G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          16 GERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYG   93 (108)
T ss_dssp             TCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEeeecCC
Confidence            7999999987543 2346889993  32   110          1234445556678999999999999999998753

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.46  E-value=6.7e-07  Score=60.23  Aligned_cols=64  Identities=22%  Similarity=0.358  Sum_probs=45.2

Q ss_pred             CCceEEEEEeccC---CCCeeEEeeC--CEEc---c----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTK---PPPTVKWYKG--NREL---S----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~---p~~~v~W~k~--g~~l---~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|...+.   ....+.|||.  |+..   .          ..++........+.|+|.+++.+|+|.|.|.+.+
T Consensus        15 G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   94 (112)
T d1lgva1          15 GQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYD   94 (112)
T ss_dssp             TCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEEEEeeec
Confidence            7999999997543   2345899983  2211   0          1234455556678999999999999999998865


Q ss_pred             CC
Q psy12422         63 KH   64 (356)
Q Consensus        63 ~~   64 (356)
                      ..
T Consensus        95 ~~   96 (112)
T d1lgva1          95 GS   96 (112)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.46  E-value=1.3e-06  Score=58.56  Aligned_cols=72  Identities=19%  Similarity=0.336  Sum_probs=51.7

Q ss_pred             CCceeecCCCeEEEEEEEcCC--CCCeEEEEE------CCEEccCCCceeEEEeC--CEEEEEEccCCCCCCeEEEEEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGD--PEPRVSWTK------NGQPLNSSNILDLKYKN--GVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~--p~p~i~W~~------~g~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      |..+++.+|++++|.|...+.  ....+.|++      ....+....++....+.  ....|+|.+++.+|+|.|.|.+.
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   85 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLG   85 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEe
Confidence            456778899999999988543  456799998      12333334444444332  35789999999999999999765


Q ss_pred             cC
Q psy12422        266 NS  267 (356)
Q Consensus       266 n~  267 (356)
                      ..
T Consensus        86 ~~   87 (112)
T d1sq2n_          86 VA   87 (112)
T ss_dssp             BT
T ss_pred             cC
Confidence            44

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.46  E-value=3.3e-07  Score=62.21  Aligned_cols=62  Identities=16%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeC-----CEEc------------------ccCCeeEE--ecCCeEEEEEeeCCCCCCe
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKG-----NREL------------------SKRDYSMS--YSDGVVSMEIIDCKPEDSG   54 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~-----g~~l------------------~~~~~~~~--~~~~~~~L~i~~~~~~D~G   54 (356)
                      |++|+|.|.+.+ .....+.|||.     ++.+                  ...++...  .....+.|+|.+++.+|+|
T Consensus        13 G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg   92 (115)
T d2atpb1          13 NHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSD   92 (115)
T ss_dssp             TSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCGGGCE
T ss_pred             CCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccCCCCCc
Confidence            899999999865 34457899983     2221                  01111121  2234568999999999999


Q ss_pred             EEEEEEEe
Q psy12422         55 EYKCVATN   62 (356)
Q Consensus        55 ~Y~C~a~n   62 (356)
                      .|.|.+..
T Consensus        93 ~Y~Ca~~~  100 (115)
T d2atpb1          93 FYFCATVG  100 (115)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEeEcC
Confidence            99998754

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=2.3e-07  Score=62.71  Aligned_cols=64  Identities=17%  Similarity=0.326  Sum_probs=45.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---cc----------cCCee--EEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---LS----------KRDYS--MSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l~----------~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|...+.....+.|||.  |+.   +.          ..++.  .......++|+|.+++.+|+|.|.|.+...
T Consensus        15 G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa~~~~   94 (113)
T d2bnqd1          15 GENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPT   94 (113)
T ss_dssp             TCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEES
T ss_pred             CCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEeEeEecC
Confidence            79999999987665667899992  211   10          11222  223456679999999999999999998755


Q ss_pred             C
Q psy12422         64 H   64 (356)
Q Consensus        64 ~   64 (356)
                      .
T Consensus        95 ~   95 (113)
T d2bnqd1          95 S   95 (113)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.45  E-value=4.8e-07  Score=60.00  Aligned_cols=60  Identities=23%  Similarity=0.261  Sum_probs=43.1

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-----------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-----------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-----------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|..... ...+.|||.  |+..           .  ...+.....+..++|.|.+++.+|+|.|.|.+.
T Consensus        15 G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          15 GEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQQW   89 (104)
T ss_dssp             TCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEEec
Confidence            8999999987433 445899993  2111           0  123444555677899999999999999999764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.44  E-value=3.5e-07  Score=61.10  Aligned_cols=62  Identities=26%  Similarity=0.292  Sum_probs=45.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CE---Ec-c---------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NR---EL-S---------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~---~l-~---------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.........+.|||.  |+   .| .         ..++.....+..+.|.|.+++.+|+|.|.|.+..
T Consensus        16 G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          16 GETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHY   92 (109)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEeeeC
Confidence            89999999986554567999992  22   11 0         1234455566678999999999999999998753

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.44  E-value=1.5e-06  Score=58.54  Aligned_cols=72  Identities=21%  Similarity=0.343  Sum_probs=51.1

Q ss_pred             cCCceeecCCCeEEEEEEEcCC--CCCeEEEEE--CCE----EccCCCceeEEEe--CCEEEEEEccCCCCCCeEEEEEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGD--PEPRVSWTK--NGQ----PLNSSNILDLKYK--NGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~--p~p~i~W~~--~g~----~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      .|..+.+.+|++++|.|...+.  ....+.|++  .|.    .+....+.....+  .....|+|.+++.+|+|.|.|.+
T Consensus         6 ~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~   85 (113)
T d1vesa_           6 TPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA   85 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeee
Confidence            3556788999999999998643  445699997  222    2233344444333  33568999999999999999987


Q ss_pred             Ec
Q psy12422        265 TN  266 (356)
Q Consensus       265 ~n  266 (356)
                      ..
T Consensus        86 ~~   87 (113)
T d1vesa_          86 FY   87 (113)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=1.3e-06  Score=58.86  Aligned_cols=75  Identities=12%  Similarity=0.193  Sum_probs=51.6

Q ss_pred             ccCCceeecCCCeEEEEEEEcCC-CCCeEEEEE--CCE-E--c----------cCCCceeEEEe--CCEEEEEEccCCCC
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTK--NGQ-P--L----------NSSNILDLKYK--NGVASLQIQEVFPE  255 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~--~g~-~--~----------~~~~~~~~~~~--~~~~~L~i~~v~~~  255 (356)
                      ..|..+.+.+|++++|.|...+. ....+.|++  .|. +  +          ....++.....  .....|.|.+++.+
T Consensus         4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   83 (114)
T d3bp5a1           4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN   83 (114)
T ss_dssp             EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGG
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcC
Confidence            34567789999999999998654 345689997  221 1  1          11223333332  23578999999999


Q ss_pred             CCeEEEEEEEcCC
Q psy12422        256 DEGVYVCTATNSL  268 (356)
Q Consensus       256 d~G~Y~C~a~n~~  268 (356)
                      |+|.|.|.+....
T Consensus        84 Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          84 DSGIYLCGAISLH   96 (114)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             CCeEEEEEEEeCC
Confidence            9999999886544

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.3e-07  Score=62.57  Aligned_cols=76  Identities=13%  Similarity=0.155  Sum_probs=44.3

Q ss_pred             CCceEEEEEeccCCC---CeeEEe--eCCE-Ecc---------c---C--CeeEEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPP---PTVKWY--KGNR-ELS---------K---R--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p~---~~v~W~--k~g~-~l~---------~---~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|.....+.   ..+.|+  ++.. .+.         .   .  ........+..+|+|.+++.+|+|.|.|.+
T Consensus         9 G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y~C~V   88 (110)
T d1ncna_           9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCII   88 (110)
T ss_dssp             TSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEEEEEE
T ss_pred             CCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEEEEEE
Confidence            899999999853322   234444  4322 110         0   0  111223344458999999999999999998


Q ss_pred             EeC--Ccee---EEEEEEEEe
Q psy12422         61 TNK--HGTD---ETNCVVIVE   76 (356)
Q Consensus        61 ~n~--~g~~---~~~~~l~v~   76 (356)
                      ...  .|..   ...+.|.|.
T Consensus        89 ~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          89 HHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEECSSSEEEEEEEEEEEEEE
T ss_pred             EecCCCceEEEEcceEEEEEE
Confidence            643  3332   334555553

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=2.5e-07  Score=62.84  Aligned_cols=62  Identities=26%  Similarity=0.309  Sum_probs=45.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CE---Ecc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NR---ELS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~---~l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|...+.-...+.|||.  |+   .|.          ..++.....+..+.|.|.+++.+|+|.|.|.+.+
T Consensus        16 G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          16 GDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             TCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             CCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEeeccC
Confidence            89999999986544456899993  21   111          1234445556667999999999999999997654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.42  E-value=3e-07  Score=62.31  Aligned_cols=65  Identities=23%  Similarity=0.278  Sum_probs=43.7

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeC--CEEcc------c--------CCe--eEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKG--NRELS------K--------RDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~--g~~l~------~--------~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|.... .....+.|||.  |+.+.      .        .+.  .....+..+.|+|.+++.+|+|.|.|.+.
T Consensus        15 G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~   94 (114)
T d2ak4d1          15 KEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALS   94 (114)
T ss_dssp             TCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCceEeCC
Confidence            899999998643 33446789982  22110      0        111  12234557799999999999999999887


Q ss_pred             eCCc
Q psy12422         62 NKHG   65 (356)
Q Consensus        62 n~~g   65 (356)
                      ...+
T Consensus        95 ~~~~   98 (114)
T d2ak4d1          95 GFYN   98 (114)
T ss_dssp             CSBT
T ss_pred             CCCC
Confidence            6543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.42  E-value=6.6e-07  Score=59.60  Aligned_cols=71  Identities=21%  Similarity=0.259  Sum_probs=51.6

Q ss_pred             ceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      .+++.+|++++|.|.........+.|++  .|....            ...+.....+.....|.|.+++.+|+|.|.|.
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence            4678999999999997654455699997  222111            12344455566778999999999999999998


Q ss_pred             EEcCC
Q psy12422        264 ATNSL  268 (356)
Q Consensus       264 a~n~~  268 (356)
                      +....
T Consensus        89 ~~~~~   93 (109)
T d1w72l1          89 VWDSR   93 (109)
T ss_dssp             EEETT
T ss_pred             ecCCC
Confidence            76543

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.41  E-value=6.6e-07  Score=60.05  Aligned_cols=71  Identities=17%  Similarity=0.231  Sum_probs=48.1

Q ss_pred             CceeecCCCeEEEEEEEcCC-CCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGD-PEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      ..+.+.+|++++|.|..... ....+.|++  .|....            ...............|.|.+++.+|+|.|.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY   85 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence            35688999999999998653 345689998  222111            011112222344578999999999999999


Q ss_pred             EEEEcC
Q psy12422        262 CTATNS  267 (356)
Q Consensus       262 C~a~n~  267 (356)
                      |.+...
T Consensus        86 Ca~~~~   91 (110)
T d2esvd1          86 CIVVRS   91 (110)
T ss_dssp             EEEEES
T ss_pred             EEEeCC
Confidence            987643

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.1e-07  Score=57.91  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=56.7

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+.. .|..|++|+|.|.......-.+.|+|+|......    .........+.|.+++.+|+|.|+|....
T Consensus         3 ~PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~----~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2           3 YGKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             SCCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             CCCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE----EcCCCcccEEEEeccccccCcEEEEEEEc
Confidence            456888777755 6899999999998643445579999998543322    12223346899999999999999998765


Q ss_pred             CC
Q psy12422        267 SL  268 (356)
Q Consensus       267 ~~  268 (356)
                      ..
T Consensus        78 ~~   79 (96)
T d1ucta2          78 NR   79 (96)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.41  E-value=1.2e-06  Score=58.99  Aligned_cols=74  Identities=23%  Similarity=0.278  Sum_probs=52.9

Q ss_pred             CCceeecCCCeEEEEEEEcCCC---CCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCe
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP---EPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEG  258 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p---~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G  258 (356)
                      |..+.+.+|++++|.|...+..   ...+.|++  .|..+.            ....+..........|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            4457899999999999986542   24589998  221110            123444555667789999999999999


Q ss_pred             EEEEEEEcCCC
Q psy12422        259 VYVCTATNSLG  269 (356)
Q Consensus       259 ~Y~C~a~n~~g  269 (356)
                      .|.|.+.+..+
T Consensus        87 ~YyCa~~~~~~   97 (112)
T d1lgva1          87 DYYCSSYDGSS   97 (112)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEEEeeecCCC
Confidence            99998776443

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.4e-07  Score=61.78  Aligned_cols=85  Identities=15%  Similarity=0.234  Sum_probs=54.2

Q ss_pred             cCCceeecCCCeEEEEEEEcCCC---CCeEEEEECC--EEc----c--------CCCceeE--EEeCCEEEEEEccCCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDP---EPRVSWTKNG--QPL----N--------SSNILDL--KYKNGVASLQIQEVFPE  255 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p---~p~i~W~~~g--~~~----~--------~~~~~~~--~~~~~~~~L~i~~v~~~  255 (356)
                      .|..+.+.+|++++|.|......   ...+.|++..  ..+    .        ...+..+  ....+...|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            34567889999999999874322   3457898732  111    0        0112222  22344678999999999


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEec
Q psy12422        256 DEGVYVCTATNSLGTAETKCKLTP  279 (356)
Q Consensus       256 d~G~Y~C~a~n~~g~~~~~~~l~p  279 (356)
                      |+|.|.|.+..........+.|.+
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V  108 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEV  108 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEE
Confidence            999999988655444455555553

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.40  E-value=5.8e-07  Score=60.86  Aligned_cols=76  Identities=17%  Similarity=0.212  Sum_probs=50.4

Q ss_pred             ccCCceeecCCCeEEEEEEEcC-CCCCeEEEEE--CCEEcc------CC-------CceeE--EEeCCEEEEEEccCCCC
Q psy12422        194 NKLTDKTIDDGQCLDLSAVVKG-DPEPRVSWTK--NGQPLN------SS-------NILDL--KYKNGVASLQIQEVFPE  255 (356)
Q Consensus       194 ~~~~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~--~g~~~~------~~-------~~~~~--~~~~~~~~L~i~~v~~~  255 (356)
                      ..+..+.+.+|++++|.|.... .....+.|++  .|....      ..       .+...  ........|.|.+++.+
T Consensus         5 Q~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   84 (114)
T d2ak4d1           5 QAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVV   84 (114)
T ss_dssp             CCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             ecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccc
Confidence            3345678999999999998753 3445689998  222111      00       01111  12234578999999999


Q ss_pred             CCeEEEEEEEcCCC
Q psy12422        256 DEGVYVCTATNSLG  269 (356)
Q Consensus       256 d~G~Y~C~a~n~~g  269 (356)
                      |+|.|.|.+....+
T Consensus        85 Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          85 DSAVYFCALSGFYN   98 (114)
T ss_dssp             GCEEEEEEEECSBT
T ss_pred             cCCCceEeCCCCCC
Confidence            99999998776554

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.2e-06  Score=56.77  Aligned_cols=64  Identities=14%  Similarity=0.220  Sum_probs=44.8

Q ss_pred             CCceEEEEEecc-CCCCeeEEeeCCEEcccCCeeEEe--cCCeE----EEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYKGNRELSKRDYSMSY--SDGVV----SMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~--~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      |+.++|.|.+.| +|.+.|+|++||+.+.........  .++.+    .|.|.   ..+...|+|.+.+..-..
T Consensus        16 ~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          16 SNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             TTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCE
T ss_pred             CCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCC
Confidence            467899999965 799999999999988754433322  33433    34443   456789999998875443

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.40  E-value=5.3e-07  Score=60.36  Aligned_cols=62  Identities=23%  Similarity=0.269  Sum_probs=45.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CE---Ecc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NR---ELS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~---~l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|...+.-...+.|||.  |+   .|.          ..++.....+..+.|+|.+++.+|+|.|.|.+..
T Consensus        18 G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          18 GDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             TCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEeecC
Confidence            79999999986654567899982  21   110          1234455556677999999999999999998654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=1.1e-06  Score=57.49  Aligned_cols=73  Identities=18%  Similarity=0.276  Sum_probs=47.8

Q ss_pred             ecCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeEEEe--CCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        201 IDDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDLKYK--NGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       201 v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      ...|+.++|.|.+.|+ |. ..|+|.+||..+...........  +.........+..++.+.|+|++.+..-....
T Consensus        15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl~~p~   91 (99)
T d1lk2b_          15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPK   91 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTTSSSCE
T ss_pred             ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCCCCCCe
Confidence            3468889999999885 43 36999999998875433222222  22233334445566778999999987654333

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.39  E-value=1e-06  Score=59.03  Aligned_cols=63  Identities=17%  Similarity=0.164  Sum_probs=44.0

Q ss_pred             CCceEEEEEeccC-C---CCeeEEeeC--CEEc----c---------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTK-P---PPTVKWYKG--NREL----S---------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~-p---~~~v~W~k~--g~~l----~---------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|+|...+. .   ...+.|||.  |+..    .         ..++.....+..+.|+|.+++.+|+|.|.|.+.
T Consensus        16 G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~   95 (111)
T d2gsia1          16 GQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATYYCSHI   95 (111)
T ss_dssp             TSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCceEEEEEC
Confidence            8999999987431 1   234899993  2211    0         124555556677899999999999999999765


Q ss_pred             eC
Q psy12422         62 NK   63 (356)
Q Consensus        62 n~   63 (356)
                      +.
T Consensus        96 ~~   97 (111)
T d2gsia1          96 RE   97 (111)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.38  E-value=8.2e-07  Score=59.14  Aligned_cols=63  Identities=22%  Similarity=0.413  Sum_probs=45.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---cc----------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---LS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.........+.|||.  |+.   |-          ..++.....+..+.|.|.+++.+|+|.|.|.+...
T Consensus        14 G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   91 (108)
T d1nfde1          14 GETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYG   91 (108)
T ss_dssp             TSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEET
T ss_pred             CCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEEeecC
Confidence            89999999885444456899992  321   10          12345555667789999999999999999987643

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.38  E-value=1.2e-06  Score=58.77  Aligned_cols=71  Identities=21%  Similarity=0.263  Sum_probs=51.2

Q ss_pred             CceeecCCCeEEEEEEEcCCC--CCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      ..+.+.+|++++|.|...+.-  ...+.|++  .+....            ..+++....++....|.|.+++.+|+|.|
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence            356899999999999986533  34599997  221111            12344455566778999999999999999


Q ss_pred             EEEEEcC
Q psy12422        261 VCTATNS  267 (356)
Q Consensus       261 ~C~a~n~  267 (356)
                      .|.+...
T Consensus        88 yCA~~~~   94 (111)
T d1rzfl1          88 YCGTWDS   94 (111)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9987654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.38  E-value=1.3e-06  Score=59.17  Aligned_cols=76  Identities=21%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             cCCceeecCCCeEEEEEEEcCC-CCCeEEEEE---CCEEc--c------------CCCceeEEEe--CCEEEEEEccCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTK---NGQPL--N------------SSNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~---~g~~~--~------------~~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      .+..+.+.+|++++|.|..... ....+.|++   +..+.  -            ...++....+  ....+|+|.+++.
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT   85 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccc
Confidence            3456689999999999998543 456799987   22111  0            1123333222  3346899999999


Q ss_pred             CCCeEEEEEEEcCCCc
Q psy12422        255 EDEGVYVCTATNSLGT  270 (356)
Q Consensus       255 ~d~G~Y~C~a~n~~g~  270 (356)
                      +|+|.|.|.+....+.
T Consensus        86 ~Dsg~YyCa~~~~~~~  101 (116)
T d1tvda_          86 EDSATYYCAFTLPPPT  101 (116)
T ss_dssp             GGCEEEEEEEECTTTT
T ss_pred             cccccceeeEecCCCC
Confidence            9999999987765443

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.2e-06  Score=56.38  Aligned_cols=73  Identities=14%  Similarity=0.231  Sum_probs=54.5

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTAT  265 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (356)
                      +.+|.+...+.. .|..|++|+|.|... .+...+.|+|+|.....    ..........+.|.+++..|+|.|+|...
T Consensus         2 ypkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~----~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           2 YDTPTLSVHPGP-EVISGEKVTFYCRLD-TATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             SCCCEEEEESCS-EEETTCEEEEEEECS-SSCSEEEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCCEEEEeCCC-cccCCCcEEEEECCC-CCCCEEEEEECCCccce----eecCCCceeEEEecccChhcCceEEEEeE
Confidence            457888777754 588999999999975 35567999997753321    12233456789999999999999999643

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=7.2e-07  Score=58.38  Aligned_cols=83  Identities=20%  Similarity=0.303  Sum_probs=51.7

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeEEE--eCCEEEEEEccCCCCCCeEEEEE
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDLKY--KNGVASLQIQEVFPEDEGVYVCT  263 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~  263 (356)
                      .+|.+.+.+.. .+..|+..+|.|.+.|+ |. ..|+|.+||..+..........  ++.........+..++.+.|+|+
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~   82 (100)
T d1k5nb_           4 RTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACR   82 (100)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEE
T ss_pred             CCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEE
Confidence            44555443211 34578899999999886 43 3599999999986432221222  22223344445556777899999


Q ss_pred             EEcCCCce
Q psy12422        264 ATNSLGTA  271 (356)
Q Consensus       264 a~n~~g~~  271 (356)
                      +.+..-..
T Consensus        83 V~H~sl~~   90 (100)
T d1k5nb_          83 VNHVTLSQ   90 (100)
T ss_dssp             EECTTCSS
T ss_pred             EEeCCCCC
Confidence            99876543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=1.3e-06  Score=58.27  Aligned_cols=69  Identities=17%  Similarity=0.269  Sum_probs=50.2

Q ss_pred             ceeecCCCeEEEEEEEcCCC-C--CeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDP-E--PRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p-~--p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      ..++.+|++++|.|...+.. .  -.+.|++  .|..+.            ..+++....+.....|.|.+++.+|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            46789999999999996433 2  2388997  222211            12345555667778999999999999999


Q ss_pred             EEEEEc
Q psy12422        261 VCTATN  266 (356)
Q Consensus       261 ~C~a~n  266 (356)
                      .|.+..
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            998764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.37  E-value=2e-07  Score=63.24  Aligned_cols=63  Identities=21%  Similarity=0.305  Sum_probs=43.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---cc----c-------CCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---LS----K-------RDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l~----~-------~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.....-...+.|||.  |+.   |-    .       .++...  ..+..+.|+|.+++.+|+|.|.|.+..
T Consensus        15 G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (115)
T d1j8hd1          15 GALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVSE   94 (115)
T ss_dssp             TSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEES
T ss_pred             CCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccceeeecC
Confidence            89999999986555567999982  221   10    0       112222  223455899999999999999999876


Q ss_pred             C
Q psy12422         63 K   63 (356)
Q Consensus        63 ~   63 (356)
                      .
T Consensus        95 ~   95 (115)
T d1j8hd1          95 S   95 (115)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.36  E-value=4.7e-07  Score=61.45  Aligned_cols=64  Identities=20%  Similarity=0.344  Sum_probs=44.2

Q ss_pred             CCceEEEEEecc-CCCCeeEEee--CCE-E--c-------------ccCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVGST-KPPPTVKWYK--GNR-E--L-------------SKRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~~v~W~k--~g~-~--l-------------~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      |++|+|.|...+ .....+.|||  .|+ +  |             ...++...  ..+..++|+|.+++.+|+|.|.|.
T Consensus        15 G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa   94 (116)
T d1tvda_          15 GSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCA   94 (116)
T ss_dssp             TCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccccccceee
Confidence            899999998743 3456789998  221 1  1             01233332  334557899999999999999998


Q ss_pred             EEeCC
Q psy12422         60 ATNKH   64 (356)
Q Consensus        60 a~n~~   64 (356)
                      +....
T Consensus        95 ~~~~~   99 (116)
T d1tvda_          95 FTLPP   99 (116)
T ss_dssp             EECTT
T ss_pred             EecCC
Confidence            87653

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.36  E-value=1.3e-06  Score=58.70  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEE--EeCCEEEEEEccCCCCCCeE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLK--YKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~--~~~~~~~L~i~~v~~~d~G~  259 (356)
                      +..+.+.+|++++|.|.........+.|++  .|....            ...+....  .......|.|.+++.+|+|.
T Consensus         7 p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAV   86 (111)
T ss_dssp             CSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEE
Confidence            445678999999999998766666789998  222111            01112222  22446899999999999999


Q ss_pred             EEEEEEc
Q psy12422        260 YVCTATN  266 (356)
Q Consensus       260 Y~C~a~n  266 (356)
                      |.|-+..
T Consensus        87 YyCa~~~   93 (111)
T d1bd2d1          87 YFCAAME   93 (111)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9997764

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.35  E-value=2e-06  Score=57.74  Aligned_cols=69  Identities=26%  Similarity=0.334  Sum_probs=50.6

Q ss_pred             ceeecCCCeEEEEEEEcCCC--CCeEEEEEC--CEEc------------cCCCceeEEEeCCEEEEEEccCCCCCCeEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDP--EPRVSWTKN--GQPL------------NSSNILDLKYKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~--g~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      .+.+.+|++++|.|.+.+.-  ...+.|++-  +...            ....++....+.....|.|.+++.+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            46789999999999986543  456899972  2111            0122444555667789999999999999999


Q ss_pred             EEEEc
Q psy12422        262 CTATN  266 (356)
Q Consensus       262 C~a~n  266 (356)
                      |.+..
T Consensus        89 CA~~~   93 (114)
T d2rhea_          89 CAAWN   93 (114)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            97764

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.35  E-value=4.3e-07  Score=61.51  Aligned_cols=73  Identities=14%  Similarity=0.140  Sum_probs=49.8

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEcc------------CCCceeEE--EeCCEEEEEEccCCCCCCeE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLN------------SSNILDLK--YKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~------------~~~~~~~~--~~~~~~~L~i~~v~~~d~G~  259 (356)
                      +..+.+.+|++++|.|.........+.|+|.  |..+.            ...+....  .......|.|.+++.+|+|.
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSAL   87 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCcc
Confidence            4556899999999999987666778999982  21111            01111111  11234579999999999999


Q ss_pred             EEEEEEcCC
Q psy12422        260 YVCTATNSL  268 (356)
Q Consensus       260 Y~C~a~n~~  268 (356)
                      |.|.+....
T Consensus        88 YyCa~~~~~   96 (115)
T d1lp9e1          88 YYCALFLAS   96 (115)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEEcCC
Confidence            999876543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.35  E-value=1.3e-06  Score=58.62  Aligned_cols=69  Identities=20%  Similarity=0.301  Sum_probs=48.5

Q ss_pred             CCceeecCCCeEEEEEEEcCCC-----CCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP-----EPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPED  256 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p-----~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d  256 (356)
                      |..+++.+|++++|.|...+.-     ...+.|++  .|....            ...+.....++....|.|.+++.+|
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~D   87 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAED   87 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccC
Confidence            4556789999999999986532     34589987  222111            1223444455667889999999999


Q ss_pred             CeEEEEEE
Q psy12422        257 EGVYVCTA  264 (356)
Q Consensus       257 ~G~Y~C~a  264 (356)
                      ++.|.|..
T Consensus        88 sAvYyCa~   95 (112)
T d1mjul1          88 VGVYYCLQ   95 (112)
T ss_dssp             CEEEEEEE
T ss_pred             CceEEEEe
Confidence            99999943

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.34  E-value=3.5e-07  Score=62.06  Aligned_cols=73  Identities=16%  Similarity=0.264  Sum_probs=50.0

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc-----C--------CCceeEEE--eCCEEEEEEccCCCCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN-----S--------SNILDLKY--KNGVASLQIQEVFPEDE  257 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~-----~--------~~~~~~~~--~~~~~~L~i~~v~~~d~  257 (356)
                      .+..+.+.+|++++|.|.....-...+.|++  .|..+.     .        ..+.....  ......|+|.+++.+|+
T Consensus         6 ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1j8hd1           6 LGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDA   85 (115)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGC
T ss_pred             CCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCC
Confidence            3456789999999999998766566799998  222111     0        01111111  12235799999999999


Q ss_pred             eEEEEEEEcC
Q psy12422        258 GVYVCTATNS  267 (356)
Q Consensus       258 G~Y~C~a~n~  267 (356)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1j8hd1          86 AEYFCAVSES   95 (115)
T ss_dssp             EEEEEEEESS
T ss_pred             ccceeeecCC
Confidence            9999988764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.34  E-value=8.9e-07  Score=59.62  Aligned_cols=62  Identities=18%  Similarity=0.242  Sum_probs=43.5

Q ss_pred             CCceEEEEEeccC------CCCeeEEeeC--CEEc-------------ccCCeeEEecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVGSTK------PPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~~g~------p~~~v~W~k~--g~~l-------------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      |++|+|.|...+.      ....+.|||.  |+..             ....+.....+..+.|+|.+++.+|+|.|.|.
T Consensus        16 G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Dsa~YyCA   95 (113)
T d1q9ra1          16 GEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLAVYYCK   95 (113)
T ss_dssp             TSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCCeEEEec
Confidence            7999999986432      1234899993  3211             01234455566778999999999999999997


Q ss_pred             EEe
Q psy12422         60 ATN   62 (356)
Q Consensus        60 a~n   62 (356)
                      +.+
T Consensus        96 ~~~   98 (113)
T d1q9ra1          96 QSY   98 (113)
T ss_dssp             ECS
T ss_pred             ccC
Confidence            643

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.34  E-value=3.9e-07  Score=61.36  Aligned_cols=62  Identities=19%  Similarity=0.338  Sum_probs=43.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEcc-------------cCCee--EEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRELS-------------KRDYS--MSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l~-------------~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|+|...+.-...+.|||.  |+...             ..+..  ....+..+.|+|.+++.+|+|.|.|.+..
T Consensus        14 G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          14 GETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASA   92 (110)
T ss_dssp             TSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEECCEE
T ss_pred             CCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeeeecC
Confidence            89999999986544456899983  22110             01111  12334567999999999999999998764

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.33  E-value=9.6e-07  Score=59.22  Aligned_cols=72  Identities=21%  Similarity=0.224  Sum_probs=49.0

Q ss_pred             CCceeecCCCeEEEEEEEcCC-C---CCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGD-P---EPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~-p---~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~  257 (356)
                      |..+.+.+|++++|.|..... +   ...+.|++  .|....            ...+.....+.....|.|.+++.+|+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence            455678899999999987432 2   23499998  332111            11233333445568999999999999


Q ss_pred             eEEEEEEEcC
Q psy12422        258 GVYVCTATNS  267 (356)
Q Consensus       258 G~Y~C~a~n~  267 (356)
                      |.|.|.+.+.
T Consensus        88 a~YyCa~~~~   97 (111)
T d1j05a_          88 ATYYCQQTNE   97 (111)
T ss_dssp             EEEEEEECSS
T ss_pred             ccEEEeecCC
Confidence            9999976543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=9.7e-07  Score=59.82  Aligned_cols=71  Identities=18%  Similarity=0.220  Sum_probs=50.5

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEc---c---------CCCceeEEEeCCEEEEEEccCCCCCCeEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPL---N---------SSNILDLKYKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~---~---------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      |..+.+.+|++++|.|...+.-...+.|++-  +...   .         ...++..........|.|.+++.+|+|+|.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy   87 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF   87 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence            4456788999999999987655566999982  2111   0         122333444556678999999999999999


Q ss_pred             EEEEc
Q psy12422        262 CTATN  266 (356)
Q Consensus       262 C~a~n  266 (356)
                      |.+.+
T Consensus        88 Ca~~~   92 (119)
T d1f3rb2          88 CYQYN   92 (119)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            96653

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.33  E-value=5e-07  Score=61.25  Aligned_cols=63  Identities=17%  Similarity=0.164  Sum_probs=42.8

Q ss_pred             CCceEEEEEeccCCCCeeEEee--CCEE---cc----c-------CC--eeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYK--GNRE---LS----K-------RD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k--~g~~---l~----~-------~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|.........+.|||  .|+.   +.    .       ..  ......+..+.|+|.+++.+|+|.|.|.+..
T Consensus        15 G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          15 GASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSG   94 (115)
T ss_dssp             TSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceecccccC
Confidence            8999999998655566789998  2221   10    0       01  1112233446899999999999999998764


Q ss_pred             C
Q psy12422         63 K   63 (356)
Q Consensus        63 ~   63 (356)
                      .
T Consensus        95 ~   95 (115)
T d1i9ea_          95 F   95 (115)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.33  E-value=7.6e-07  Score=59.87  Aligned_cols=71  Identities=18%  Similarity=0.292  Sum_probs=47.9

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEccC------------CCceeEE--EeCCEEEEEEccCCCCCCeE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLNS------------SNILDLK--YKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~~------------~~~~~~~--~~~~~~~L~i~~v~~~d~G~  259 (356)
                      |....+.+|++++|.|.....-...+.|++-  |.....            ..+....  .......|.|.+++.+|+|.
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSAT   85 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSE
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCcee
Confidence            3456789999999999987655556999972  211110            0111111  12335789999999999999


Q ss_pred             EEEEEEc
Q psy12422        260 YVCTATN  266 (356)
Q Consensus       260 Y~C~a~n  266 (356)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (110)
T d1u3ha1          86 YFCAASA   92 (110)
T ss_dssp             EEECCEE
T ss_pred             EeeeecC
Confidence            9998763

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.32  E-value=2.1e-06  Score=57.45  Aligned_cols=73  Identities=19%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             cCCceeecCCCeEEEEEEEcCC-C---CCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGD-P---EPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPED  256 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~-p---~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d  256 (356)
                      .|..+.+.+|++++|.|.+... .   ...+.|++  .|....            ...++.....+....|+|.+++.+|
T Consensus         7 sP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~D   86 (111)
T d2gsia1           7 SPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEED   86 (111)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccC
Confidence            3456789999999999988542 2   22489988  222111            1234444555667899999999999


Q ss_pred             CeEEEEEEEcC
Q psy12422        257 EGVYVCTATNS  267 (356)
Q Consensus       257 ~G~Y~C~a~n~  267 (356)
                      +|.|.|.+.+.
T Consensus        87 sA~YyCa~~~~   97 (111)
T d2gsia1          87 AATYYCSHIRE   97 (111)
T ss_dssp             CEEEEEEECSS
T ss_pred             CceEEEEECCC
Confidence            99999976543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.32  E-value=8.9e-07  Score=60.20  Aligned_cols=63  Identities=24%  Similarity=0.361  Sum_probs=44.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc------------------ccCCeeEE-ecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL------------------SKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l------------------~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      |++|+|.|...+.....+.|||.  |+.+                  ...++... ..+..+.|+|.+++.+|+|.|.|.
T Consensus        16 G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa   95 (118)
T d2ij0c1          16 GTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSGFYVCS   95 (118)
T ss_dssp             TCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCceEEEE
Confidence            79999999986665678999992  2211                  01123332 234456899999999999999998


Q ss_pred             EEeC
Q psy12422         60 ATNK   63 (356)
Q Consensus        60 a~n~   63 (356)
                      +...
T Consensus        96 ~~~~   99 (118)
T d2ij0c1          96 ALAG   99 (118)
T ss_dssp             EECS
T ss_pred             EecC
Confidence            8654

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.32  E-value=1.7e-06  Score=56.24  Aligned_cols=75  Identities=19%  Similarity=0.240  Sum_probs=47.1

Q ss_pred             ecCCCeEEEEEEEcCC-C-CCeEEEEECCEEccCCCce-eEEE--eCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        201 IDDGQCLDLSAVVKGD-P-EPRVSWTKNGQPLNSSNIL-DLKY--KNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       201 v~~g~~~~l~C~~~g~-p-~p~i~W~~~g~~~~~~~~~-~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      ...++.++|.|.+.|+ | ...++|.+||..+...... ....  ++.........+..++...|+|.+.+.....-...
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~~p~~~   93 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILR   93 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTSSSCEEE
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCCCCeeE
Confidence            4567789999999886 4 3469999999988654321 1111  22222222233455666789999999866544333

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.31  E-value=1.8e-06  Score=57.87  Aligned_cols=63  Identities=22%  Similarity=0.303  Sum_probs=43.7

Q ss_pred             CCceEEEEEecc--CCCCeeEEeeC--C----EEccc-CCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGST--KPPPTVKWYKG--N----RELSK-RDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g--~p~~~v~W~k~--g----~~l~~-~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|...+  .....+.|||.  |    ..+.. .++...  .....++|+|.+++.+|+|.|.|.+...
T Consensus        14 G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          14 GESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             TCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             CCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecC
Confidence            789999998743  34567999982  2    22222 233332  2334679999999999999999987543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=7.2e-07  Score=60.28  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=42.9

Q ss_pred             CCceEEEEEecc--CCCCeeEEeeC--CEE---cc-------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEEEE
Q psy12422          1 MQNVIKVKVGST--KPPPTVKWYKG--NRE---LS-------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEYKC   58 (356)
Q Consensus         1 g~~v~l~C~~~g--~p~~~v~W~k~--g~~---l~-------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C   58 (356)
                      |++|+|.|...+  .....+.|||.  |..   +.             ..++.+.  ...+.++|+|.+++.+|+|.|.|
T Consensus        14 G~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~C   93 (113)
T d1smoa_          14 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC   93 (113)
T ss_dssp             TCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCceEEE
Confidence            899999998743  23456889983  211   10             0122222  24566789999999999999999


Q ss_pred             EEEeC
Q psy12422         59 VATNK   63 (356)
Q Consensus        59 ~a~n~   63 (356)
                      .+...
T Consensus        94 av~~~   98 (113)
T d1smoa_          94 VIYQP   98 (113)
T ss_dssp             EECCT
T ss_pred             EEECC
Confidence            87543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.30  E-value=4.1e-07  Score=61.69  Aligned_cols=71  Identities=23%  Similarity=0.328  Sum_probs=47.9

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------CCC---------ceeEEEeCCEEEEEEccCCCCCCe
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------SSN---------ILDLKYKNGVASLQIQEVFPEDEG  258 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------~~~---------~~~~~~~~~~~~L~i~~v~~~d~G  258 (356)
                      +..+.+.+|++++|.|.........+.|++  .|....      ...         .......+....|.|.+++.+|+|
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccc
Confidence            445789999999999998766667788997  221110      000         111111223467999999999999


Q ss_pred             EEEEEEEc
Q psy12422        259 VYVCTATN  266 (356)
Q Consensus       259 ~Y~C~a~n  266 (356)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (115)
T d1i9ea_          87 VYFCAVSG   94 (115)
T ss_dssp             EEEEEEEE
T ss_pred             eecccccC
Confidence            99997653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.30  E-value=1.7e-06  Score=57.93  Aligned_cols=61  Identities=21%  Similarity=0.236  Sum_probs=42.6

Q ss_pred             CCceEEEEEeccCC-----CCeeEEeeC--CEE---c--------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKP-----PPTVKWYKG--NRE---L--------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p-----~~~v~W~k~--g~~---l--------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|...+..     ...+.||+.  |+.   |        .  ..++.....+..+.|+|.+++.+|+|.|.|..
T Consensus        16 G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsAvYYC~~   95 (112)
T d1ncwl1          16 GQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQ   95 (112)
T ss_dssp             TSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCEeEEEEc
Confidence            89999999864322     245899983  221   1        0  12344455667789999999999999999965


Q ss_pred             E
Q psy12422         61 T   61 (356)
Q Consensus        61 ~   61 (356)
                      .
T Consensus        96 ~   96 (112)
T d1ncwl1          96 G   96 (112)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.29  E-value=2.3e-06  Score=57.62  Aligned_cols=62  Identities=21%  Similarity=0.308  Sum_probs=42.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEcc----------------cCCeeE-EecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRELS----------------KRDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l~----------------~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|...+. ...+.|||.  |+...                ..++.. ...+..++|+|.+++.+|+|.|.|.+.
T Consensus        14 G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~   92 (113)
T d2ntsp1          14 GQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCASS   92 (113)
T ss_dssp             TCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceeeeeeee
Confidence            7999999997443 457899992  22110                112222 233456799999999999999999886


Q ss_pred             eC
Q psy12422         62 NK   63 (356)
Q Consensus        62 n~   63 (356)
                      ..
T Consensus        93 ~~   94 (113)
T d2ntsp1          93 LA   94 (113)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.29  E-value=1.9e-06  Score=56.22  Aligned_cols=82  Identities=17%  Similarity=0.267  Sum_probs=48.6

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCcee-E--EEeCCEEEEEEccCCCCCCeEEEE
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILD-L--KYKNGVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~-~--~~~~~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      .+|.+.+.+.. .+..|+..+|.|.+.|+ |. ..|+|.+||..+..+.... .  ..++.........+..++...|+|
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   82 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDC   82 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEE
Confidence            45555443211 24567888999999886 43 4599999999886532111 1  111222222333344556678999


Q ss_pred             EEEcCCCc
Q psy12422        263 TATNSLGT  270 (356)
Q Consensus       263 ~a~n~~g~  270 (356)
                      ++.+..-.
T Consensus        83 ~V~H~sl~   90 (99)
T d1uvqa1          83 KVEHWGLD   90 (99)
T ss_dssp             EEECTTSS
T ss_pred             EEEeCCCC
Confidence            99987543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.29  E-value=2.1e-06  Score=58.27  Aligned_cols=74  Identities=18%  Similarity=0.328  Sum_probs=51.7

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc-----------------CCCceeEEE-eCCEEEEEEccCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN-----------------SSNILDLKY-KNGVASLQIQEVFP  254 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~-----------------~~~~~~~~~-~~~~~~L~i~~v~~  254 (356)
                      .|....+.+|++++|.|...+.....+.|+|  .|..+.                 ...++.... ......|.|.+++.
T Consensus         7 ~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   86 (118)
T d2ij0c1           7 HPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHP   86 (118)
T ss_dssp             ECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCG
T ss_pred             cCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccc
Confidence            3456688999999999998776667899998  222110                 011222222 23356899999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy12422        255 EDEGVYVCTATNSL  268 (356)
Q Consensus       255 ~d~G~Y~C~a~n~~  268 (356)
                      +|+|.|.|.+....
T Consensus        87 ~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          87 EDSGFYVCSALAGS  100 (118)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             ccCceEEEEEecCC
Confidence            99999999876543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.29  E-value=1e-06  Score=59.05  Aligned_cols=62  Identities=18%  Similarity=0.191  Sum_probs=43.1

Q ss_pred             CCceEEEEEeccC----CCCeeEEeeC--CEEc----c---------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTK----PPPTVKWYKG--NREL----S---------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~----p~~~v~W~k~--g~~l----~---------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|.....    -...+.|||.  |+..    .         ..++.....+..+.|.|.+++.+|+|.|.|.+.
T Consensus        16 G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   95 (111)
T d1j05a_          16 GQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQT   95 (111)
T ss_dssp             TSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccEEEeec
Confidence            8999999987321    1234899993  3211    0         123444455667899999999999999999775


Q ss_pred             e
Q psy12422         62 N   62 (356)
Q Consensus        62 n   62 (356)
                      +
T Consensus        96 ~   96 (111)
T d1j05a_          96 N   96 (111)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.28  E-value=1.2e-06  Score=58.30  Aligned_cols=71  Identities=17%  Similarity=0.305  Sum_probs=51.2

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVYV  261 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  261 (356)
                      |....+.+|++++|.|.........+.|++  .|..+.            ..+++..........|.|.+++.+|+|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            345678899999999988544445688987  222110            122445556667789999999999999999


Q ss_pred             EEEEc
Q psy12422        262 CTATN  266 (356)
Q Consensus       262 C~a~n  266 (356)
                      |-+..
T Consensus        86 CA~~~   90 (108)
T d1nfde1          86 CLSSY   90 (108)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            97754

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.8e-06  Score=49.64  Aligned_cols=57  Identities=16%  Similarity=0.286  Sum_probs=40.5

Q ss_pred             CCceEEEEEeccCCCC--eeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~--~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |..+.|.|.....+.+  .-.|.|+|+.|..++    ..+....++|..  .+|+|.|.|..-..
T Consensus        12 ~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~----~~~~~tey~V~~--~D~SGeY~CVFl~~   70 (80)
T d3b5ha2          12 GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA----LPGQKTEFKVDS--DDQWGEYSCVFLPE   70 (80)
T ss_dssp             TTEEEEEEEEESCSSCCCEEEEESSSEEEECTT----CCCSEEEEEECG--GGCCEEEEEEEEST
T ss_pred             CCCEEEEEECCCCCCceeeeEEeeCCEEccccC----CCCCceEEEEec--CCCCceEEEEEcCC
Confidence            5678999999654333  359999999998653    223334667764  77899999997543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.28  E-value=9.6e-07  Score=59.85  Aligned_cols=63  Identities=22%  Similarity=0.314  Sum_probs=43.1

Q ss_pred             CCceEEEEEec-cCCCCeeEEeeC--CEEc----c----------cCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGS-TKPPPTVKWYKG--NREL----S----------KRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~-g~p~~~v~W~k~--g~~l----~----------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|... +.....+.|||.  |+.+    .          ..++...  ..+..+.|+|.+++.+|+|.|.|.+.
T Consensus        14 G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   93 (115)
T d1fo0a_          14 KTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMR   93 (115)
T ss_dssp             TCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccccceee
Confidence            79999999874 333456889982  2111    0          0122222  24456789999999999999999886


Q ss_pred             eC
Q psy12422         62 NK   63 (356)
Q Consensus        62 n~   63 (356)
                      ..
T Consensus        94 ~~   95 (115)
T d1fo0a_          94 GD   95 (115)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.28  E-value=1.5e-06  Score=58.31  Aligned_cols=62  Identities=15%  Similarity=0.269  Sum_probs=43.0

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CE-E--cc-------------cCCee-EEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NR-E--LS-------------KRDYS-MSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~-~--l~-------------~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|...+. ...+.|||.  |+ +  +.             ..++. ....+..+.|+|.+++.+|+|.|.|.+.
T Consensus        16 G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   94 (110)
T d2aq2a1          16 GEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSVYFCASG   94 (110)
T ss_dssp             TCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEEEEeeC
Confidence            7999999987543 467999992  21 1  10             01122 2234556799999999999999999876


Q ss_pred             eC
Q psy12422         62 NK   63 (356)
Q Consensus        62 n~   63 (356)
                      ..
T Consensus        95 ~~   96 (110)
T d2aq2a1          95 GG   96 (110)
T ss_dssp             ET
T ss_pred             CC
Confidence            53

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=1.9e-06  Score=58.44  Aligned_cols=62  Identities=15%  Similarity=0.097  Sum_probs=41.6

Q ss_pred             CCceEEEEEeccCCCC---eeEEeeC--CEEc-------c-------cCC--eeEEecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPP---TVKWYKG--NREL-------S-------KRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~---~v~W~k~--g~~l-------~-------~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      |++|+|.|.....-.+   .+.|||.  |+..       .       ..+  ......+..+.|+|.+++.+|+|.|.|.
T Consensus        14 g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   93 (117)
T d1dqta_          14 HGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLCK   93 (117)
T ss_dssp             TSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEeEEEE
Confidence            7899999997432222   3789992  2211       0       011  1223455677999999999999999998


Q ss_pred             EEe
Q psy12422         60 ATN   62 (356)
Q Consensus        60 a~n   62 (356)
                      +..
T Consensus        94 ~~~   96 (117)
T d1dqta_          94 VEL   96 (117)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            753

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.28  E-value=2.7e-06  Score=57.16  Aligned_cols=62  Identities=26%  Similarity=0.335  Sum_probs=43.5

Q ss_pred             CCceEEEEEecc--CCCCeeEEeeC--CEE----cc-cCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGST--KPPPTVKWYKG--NRE----LS-KRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g--~p~~~v~W~k~--g~~----l~-~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|+|...+  .+...+.|||.  |..    +. ..++...  .....+.|+|.+++.+|+|.|.|.+..
T Consensus        15 G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          15 GESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             TCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            799999999854  34456899982  221    22 2333332  234557999999999999999998854

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=6.1e-07  Score=61.41  Aligned_cols=75  Identities=13%  Similarity=0.164  Sum_probs=47.2

Q ss_pred             cCCceeecCCCeEEEEEEEcC----CCCCeEEEEE--CCEE----c---------c-CC----CceeEE--EeCCEEEEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKG----DPEPRVSWTK--NGQP----L---------N-SS----NILDLK--YKNGVASLQ  248 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g----~p~p~i~W~~--~g~~----~---------~-~~----~~~~~~--~~~~~~~L~  248 (356)
                      .+..+.+..|++++|.|....    .....+.|++  ++..    +         . ..    .+..+.  ...+..+|.
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence            345678899999999998742    2234699987  2211    1         0 00    111111  112335799


Q ss_pred             EccCCCCCCeEEEEEEEcCCC
Q psy12422        249 IQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       249 i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      |.+++.+|+|.|.|.+.+..+
T Consensus        85 I~~v~~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          85 IHNLDYSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEC---
T ss_pred             ECCCChHHCEEEEEEEEECCC
Confidence            999999999999999988643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.27  E-value=1.3e-06  Score=59.08  Aligned_cols=72  Identities=18%  Similarity=0.263  Sum_probs=48.2

Q ss_pred             cCCceeecCCCeEEEEEEEcCC-CCCeEEEEEC-----CEEc------cC-----------CCceeEEE--eCCEEEEEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGD-PEPRVSWTKN-----GQPL------NS-----------SNILDLKY--KNGVASLQI  249 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~-p~p~i~W~~~-----g~~~------~~-----------~~~~~~~~--~~~~~~L~i  249 (356)
                      .|....+.+|++++|.|.+.+. ....+.|++-     +..+      ..           ..+.....  +....+|+|
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   83 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEee
Confidence            3456789999999999998763 4556999972     2211      00           11111122  123468999


Q ss_pred             ccCCCCCCeEEEEEEEc
Q psy12422        250 QEVFPEDEGVYVCTATN  266 (356)
Q Consensus       250 ~~v~~~d~G~Y~C~a~n  266 (356)
                      .+++.+|+|.|.|.+..
T Consensus        84 ~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          84 MNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             cccCCCCCcEEEEeEcC
Confidence            99999999999997653

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.27  E-value=4.9e-06  Score=54.24  Aligned_cols=78  Identities=14%  Similarity=0.176  Sum_probs=56.2

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      ..+|.+...+.. .|..|++|+|.|... .+...+.|+|+|...... ............+.|..+...|+|.|.|.-..
T Consensus         4 ~pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2           4 YEKPSLSAQPGP-TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERR-LPAGPKVNGTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             SCCCEEEEESCS-EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEE-EECEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             CCCCEEEEeCCC-cccCCCeEEEEECCC-CCccEEEEEECCCccccE-EEccccCCccEEEEEeccccccCEEEEEEeec
Confidence            567888777754 688999999999875 356679999988543321 11123345556788889999999999997654


Q ss_pred             C
Q psy12422        267 S  267 (356)
Q Consensus       267 ~  267 (356)
                      .
T Consensus        81 ~   81 (99)
T d1nkra2          81 H   81 (99)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.27  E-value=2.2e-06  Score=57.54  Aligned_cols=62  Identities=21%  Similarity=0.265  Sum_probs=44.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------------ccCCeeE--EecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------------SKRDYSM--SYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------------~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|...+.....+.|||.  |+..             ...++..  ...+..++|.|.+++.+|+|.|.|.+..
T Consensus        15 G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          15 GRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEeeccC
Confidence            79999999986665667899992  2211             0122222  2345678999999999999999998764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.27  E-value=2.9e-06  Score=56.79  Aligned_cols=72  Identities=21%  Similarity=0.225  Sum_probs=49.8

Q ss_pred             cCCceeecCCCeEEEEEEEcCCC-----CCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDP-----EPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPE  255 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p-----~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~  255 (356)
                      .|..+.+.+|++++|.|.+.+..     ...+.|++  .|..+.            ...++.....+....|.|.+++.+
T Consensus         7 sP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~e   86 (112)
T d1ncwl1           7 SPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAE   86 (112)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccC
Confidence            35567899999999999875432     23588987  221110            123344445566788999999999


Q ss_pred             CCeEEEEEEEc
Q psy12422        256 DEGVYVCTATN  266 (356)
Q Consensus       256 d~G~Y~C~a~n  266 (356)
                      |+|.|.|...+
T Consensus        87 DsAvYYC~~~~   97 (112)
T d1ncwl1          87 DLGVYYCWQGT   97 (112)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCEeEEEEcCC
Confidence            99999995533

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.26  E-value=2.9e-06  Score=56.98  Aligned_cols=72  Identities=18%  Similarity=0.201  Sum_probs=50.0

Q ss_pred             cCCceeecCCCeEEEEEEEcCCC-----CCeEEEEE--CCEEcc------------CCCceeEEEeCCEEEEEEccCCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDP-----EPRVSWTK--NGQPLN------------SSNILDLKYKNGVASLQIQEVFPE  255 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p-----~p~i~W~~--~g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~  255 (356)
                      .|....+.+|++++|.|...+..     ...+.|++  .|....            ...++.....+....|+|.+++.+
T Consensus         8 ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   87 (113)
T d1n4xl_           8 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   87 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcc
Confidence            35567899999999999985432     24699987  221111            122344444556689999999999


Q ss_pred             CCeEEEEEEEc
Q psy12422        256 DEGVYVCTATN  266 (356)
Q Consensus       256 d~G~Y~C~a~n  266 (356)
                      |+|.|.|...+
T Consensus        88 DsavYyCa~~~   98 (113)
T d1n4xl_          88 DLGIYYCFQGS   98 (113)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCEEEEEEECC
Confidence            99999996543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.26  E-value=2.6e-06  Score=55.50  Aligned_cols=69  Identities=22%  Similarity=0.216  Sum_probs=43.8

Q ss_pred             cCCCeEEEEEEEcCCCCC--eEEEEECCEEccCCCce---eEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        202 DDGQCLDLSAVVKGDPEP--RVSWTKNGQPLNSSNIL---DLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ..++..+|.|.+.|+-++  .|+|++||..+......   ....++....+....+..++...|+|++.+..-.
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~   89 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT   89 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCS
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCC
Confidence            346677899999885433  59999999988654221   1112233344555567778888999999987654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.25  E-value=4.1e-06  Score=56.03  Aligned_cols=71  Identities=18%  Similarity=0.303  Sum_probs=48.6

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------C---------CCc-eeEEEeCCEEEEEEccCCCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------S---------SNI-LDLKYKNGVASLQIQEVFPED  256 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------~---------~~~-~~~~~~~~~~~L~i~~v~~~d  256 (356)
                      .|....+.+|++++|.|...+ ....+.|+|  .|....      .         ... ...........|+|.+++.+|
T Consensus         7 ~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (110)
T d2aq2a1           7 SPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQ   85 (110)
T ss_dssp             ECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhh
Confidence            345677899999999998864 345799998  221110      0         011 122234456889999999999


Q ss_pred             CeEEEEEEEc
Q psy12422        257 EGVYVCTATN  266 (356)
Q Consensus       257 ~G~Y~C~a~n  266 (356)
                      +|.|.|.+..
T Consensus        86 sa~YyCa~~~   95 (110)
T d2aq2a1          86 TSVYFCASGG   95 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeeCC
Confidence            9999997654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.25  E-value=2.7e-06  Score=56.22  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=49.1

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEcc------------CCCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLN------------SSNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      .|..+.+.+|++++|.|..... ...+.|++-  +....            ..........+....|.|.+++.+|+|.|
T Consensus         6 sP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (104)
T d1yqvl1           6 SPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATY   84 (104)
T ss_dssp             ESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeE
Confidence            3566789999999999987533 345789972  21110            12233444556678999999999999999


Q ss_pred             EEEEE
Q psy12422        261 VCTAT  265 (356)
Q Consensus       261 ~C~a~  265 (356)
                      .|.+.
T Consensus        85 yCa~~   89 (104)
T d1yqvl1          85 YCQQW   89 (104)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99653

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1e-06  Score=56.72  Aligned_cols=57  Identities=12%  Similarity=0.143  Sum_probs=42.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|... .+.-.+.|+|+|......   .........+.|.+++.+|+|.|+|...
T Consensus        18 G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~---~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          18 GEKVTFYCRLD-TATSMFLLLKEGRSSHVQ---RGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             TCEEEEEEECS-SSCSEEEEEEESSSCEEE---EEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCcEEEEECCC-CCCCEEEEEECCCcccee---ecCCCceeEEEecccChhcCceEEEEeE
Confidence            78999999874 345679999987643321   1223445689999999999999999753

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.25  E-value=1.1e-06  Score=59.07  Aligned_cols=62  Identities=15%  Similarity=0.235  Sum_probs=42.5

Q ss_pred             CCceEEEEEeccCC-CCeeEEeeC--CEEcc-----------cC--CeeEEecCCeEEEEEeeCCCCCCeEEEEEEEe
Q psy12422          1 MQNVIKVKVGSTKP-PPTVKWYKG--NRELS-----------KR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN   62 (356)
Q Consensus         1 g~~v~l~C~~~g~p-~~~v~W~k~--g~~l~-----------~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n   62 (356)
                      |++|+|.|...+.. ...+.|||.  |+.+.           ..  ++..........|+|.+++.+|+|.|.|.+..
T Consensus        13 G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          13 EEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             TSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             CCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEeeeEec
Confidence            89999999986543 345899993  32211           01  12223344567899999999999999997654

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.25  E-value=1.4e-06  Score=58.70  Aligned_cols=63  Identities=21%  Similarity=0.252  Sum_probs=42.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CE-Ec---c--c-----CCeeE---EecCCeEEEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NR-EL---S--K-----RDYSM---SYSDGVVSMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~-~l---~--~-----~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |++|+|.|...+. ...+.|||.  |. +.   .  .     .....   ...+..+.|+|.+++.+|+|.|.|.+....
T Consensus        16 G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          16 GTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEASS   94 (113)
T ss_dssp             TCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEEecCCC
Confidence            7999999998653 456899992  21 11   0  0     11111   122345689999999999999999887543

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.24  E-value=2.6e-06  Score=55.14  Aligned_cols=64  Identities=19%  Similarity=0.377  Sum_probs=44.3

Q ss_pred             CCeEEEEEEEcCCCCCeEEEEE--CCEEc------c-----CCCceeEEE--eCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        204 GQCLDLSAVVKGDPEPRVSWTK--NGQPL------N-----SSNILDLKY--KNGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p~i~W~~--~g~~~------~-----~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      |++++|.|.........+.|++  .|...      .     ...++....  .....+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            7899999998777777899998  22111      0     011222221  233578999999999999999988754

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.24  E-value=2.6e-06  Score=57.16  Aligned_cols=63  Identities=21%  Similarity=0.307  Sum_probs=43.7

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEc-------------ccCCeeE--EecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NREL-------------SKRDYSM--SYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l-------------~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|...+..  ...+.|||.  ++.+             ..+++..  ...+..+.|+|.+++.+|+|.|.|.+.
T Consensus        15 G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~   94 (111)
T d1cd0a_          15 GKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSY   94 (111)
T ss_dssp             TSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEEEEeec
Confidence            79999999985532  235899993  2221             0123333  234567899999999999999999876


Q ss_pred             eC
Q psy12422         62 NK   63 (356)
Q Consensus        62 n~   63 (356)
                      +.
T Consensus        95 ~~   96 (111)
T d1cd0a_          95 DA   96 (111)
T ss_dssp             ET
T ss_pred             cC
Confidence            54

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.1e-06  Score=60.24  Aligned_cols=63  Identities=16%  Similarity=0.223  Sum_probs=40.8

Q ss_pred             CCceEEEEEecc----CC---CCeeEEeeCCEEcc------------------cCCeeEE--ecCCeEEEEEeeCCCCCC
Q psy12422          1 MQNVIKVKVGST----KP---PPTVKWYKGNRELS------------------KRDYSMS--YSDGVVSMEIIDCKPEDS   53 (356)
Q Consensus         1 g~~v~l~C~~~g----~p---~~~v~W~k~g~~l~------------------~~~~~~~--~~~~~~~L~i~~~~~~D~   53 (356)
                      |++|+|.|....    ..   ...+.||+.+..-.                  ..++...  ...+.++|+|.+++.+|+
T Consensus        16 G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   95 (121)
T d2g5ra1          16 GMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDA   95 (121)
T ss_dssp             TCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSCCGGGC
T ss_pred             CCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCCChHHC
Confidence            789999999731    11   12468998532110                  0112221  123567899999999999


Q ss_pred             eEEEEEEEeC
Q psy12422         54 GEYKCVATNK   63 (356)
Q Consensus        54 G~Y~C~a~n~   63 (356)
                      |.|.|.+...
T Consensus        96 G~Y~C~v~~~  105 (121)
T d2g5ra1          96 GRYFFRMEKG  105 (121)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEEEEeC
Confidence            9999999764

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.23  E-value=2.4e-06  Score=57.40  Aligned_cols=61  Identities=20%  Similarity=0.282  Sum_probs=41.3

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---c---------c-----cCCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---L---------S-----KRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l---------~-----~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++++|.|...+ ....+.|||.  |+.   +         .     ..++... .....+.|+|.+++.+|+|.|.|.+
T Consensus        14 G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   92 (112)
T d1kgce1          14 GQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVYLCAS   92 (112)
T ss_dssp             TCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEEEEEee
Confidence            799999998643 2457999992  211   1         0     1122222 2334578999999999999999987


Q ss_pred             Ee
Q psy12422         61 TN   62 (356)
Q Consensus        61 ~n   62 (356)
                      ..
T Consensus        93 ~~   94 (112)
T d1kgce1          93 SL   94 (112)
T ss_dssp             ES
T ss_pred             eC
Confidence            64

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.23  E-value=2.6e-06  Score=55.70  Aligned_cols=80  Identities=18%  Similarity=0.286  Sum_probs=48.1

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCcee--E-EEeCCE---EEEEEccCCCCCCeE
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILD--L-KYKNGV---ASLQIQEVFPEDEGV  259 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~--~-~~~~~~---~~L~i~~v~~~d~G~  259 (356)
                      .+|.+.+.+.. .+..|+..+|.|.+.|+ |. ..|+|++||..+..+....  . ..++..   +.|.+   ...+...
T Consensus         4 v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~   79 (101)
T d1fnga1           4 VAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDF   79 (101)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCC
T ss_pred             cCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCE
Confidence            34555443211 24567788999999875 53 3699999999886532111  1 111222   34444   3455668


Q ss_pred             EEEEEEcCCCce
Q psy12422        260 YVCTATNSLGTA  271 (356)
Q Consensus       260 Y~C~a~n~~g~~  271 (356)
                      |+|++.+..-..
T Consensus        80 ytC~V~H~sl~~   91 (101)
T d1fnga1          80 YDCEVDHWGLEE   91 (101)
T ss_dssp             EEEEEECTTCSS
T ss_pred             EEEEEEECCCCC
Confidence            999999875433

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.23  E-value=6.8e-06  Score=55.74  Aligned_cols=73  Identities=19%  Similarity=0.353  Sum_probs=50.4

Q ss_pred             cCCceeecCCCeEEEEEEEcCCC--CCeEEEEE--CCEEcc------------CCCceeEEEe--CCEEEEEEccCCCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDP--EPRVSWTK--NGQPLN------------SSNILDLKYK--NGVASLQIQEVFPED  256 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~--~g~~~~------------~~~~~~~~~~--~~~~~L~i~~v~~~d  256 (356)
                      .+..+.+.+|++++|.|...+..  ...+.|++  -|..+.            ..+++....+  .....|.|.+++.+|
T Consensus         7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~D   86 (120)
T d1hxma1           7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD   86 (120)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             cCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccC
Confidence            34566789999999999997654  35699997  221111            1123333332  345899999999999


Q ss_pred             CeEEEEEEEcC
Q psy12422        257 EGVYVCTATNS  267 (356)
Q Consensus       257 ~G~Y~C~a~n~  267 (356)
                      +|.|.|.....
T Consensus        87 sa~YyCA~~~~   97 (120)
T d1hxma1          87 EGSYYCACDTL   97 (120)
T ss_dssp             CEEEEEEEECC
T ss_pred             CceeecCcccC
Confidence            99999976543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=8.1e-06  Score=53.04  Aligned_cols=81  Identities=15%  Similarity=0.157  Sum_probs=52.6

Q ss_pred             CCCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCce--eEEEeCCEEEEEEccCCCCCCeEEEEEE
Q psy12422        187 MTPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNIL--DLKYKNGVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       187 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      +.+|.+...+.. .|..|++|+|.|... .....+.++|+|.........  .....+....+.|.+++..|+|.|+|.-
T Consensus         2 ~pkPsLsa~P~~-~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           2 YIKPTLSAQPSP-VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             SCCCEEEEESCS-EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEee
Confidence            456788777755 589999999999975 345568888887654322111  0111233568999999999999999987


Q ss_pred             EcCCC
Q psy12422        265 TNSLG  269 (356)
Q Consensus       265 ~n~~g  269 (356)
                      .....
T Consensus        80 ~~~~~   84 (98)
T d1ugna2          80 YDSNS   84 (98)
T ss_dssp             ECTTS
T ss_pred             EcCCC
Confidence            65543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.22  E-value=1.6e-06  Score=58.54  Aligned_cols=63  Identities=17%  Similarity=0.352  Sum_probs=43.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------c------cCCeeE--EecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------S------KRDYSM--SYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------~------~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|...+. ...+.|||.  |+.+       .      ..++..  ...+..++|+|.+++.+|+|.|.|.+...
T Consensus        15 G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (115)
T d1ogad1          15 GENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGS   93 (115)
T ss_dssp             TCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEcccccCC
Confidence            7999999998654 346899992  2211       0      112222  23445679999999999999999987654


Q ss_pred             C
Q psy12422         64 H   64 (356)
Q Consensus        64 ~   64 (356)
                      .
T Consensus        94 ~   94 (115)
T d1ogad1          94 Q   94 (115)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.22  E-value=2.3e-06  Score=57.48  Aligned_cols=62  Identities=21%  Similarity=0.248  Sum_probs=43.6

Q ss_pred             CCceEEEEEeccC-----CCCeeEEeeC--CEEc-----------c--cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTK-----PPPTVKWYKG--NREL-----------S--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~-----p~~~v~W~k~--g~~l-----------~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|...+.     ....+.|||.  |+..           .  ..++.....+..+.|+|.+++.+|+|.|.|..
T Consensus        17 G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~   96 (113)
T d1n4xl_          17 GDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQ   96 (113)
T ss_dssp             TCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCEEEEEEE
Confidence            7999999997432     2246899983  2211           0  12344455567789999999999999999965


Q ss_pred             Ee
Q psy12422         61 TN   62 (356)
Q Consensus        61 ~n   62 (356)
                      .+
T Consensus        97 ~~   98 (113)
T d1n4xl_          97 GS   98 (113)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.7e-07  Score=60.07  Aligned_cols=62  Identities=13%  Similarity=0.080  Sum_probs=42.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|... .+...+.+||+|..................+.|.+++.+|+|.|+|.....
T Consensus        18 G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (96)
T d1ugna1          18 GSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD   79 (96)
T ss_dssp             TCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCC
Confidence            89999999973 445678899988643210000111122347999999999999999987643

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3e-06  Score=55.36  Aligned_cols=64  Identities=16%  Similarity=0.120  Sum_probs=44.0

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccCC--eeEEecCCeEE-EEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRD--YSMSYSDGVVS-MEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~--~~~~~~~~~~~-L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+.++|.|.+.|. |. ..|+|++||+++....  ......++.+. .....+..+|.+.|+|.+.+..
T Consensus        19 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          19 GKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             TSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             CCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCC
Confidence            5788999999885 44 3789999999986432  12345555442 2333445677789999998763

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.1e-06  Score=54.52  Aligned_cols=67  Identities=18%  Similarity=0.291  Sum_probs=43.4

Q ss_pred             CCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCc--eeEEEe--CCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        203 DGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNI--LDLKYK--NGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       203 ~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~--~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      .++.++|.|.+.| +|.. .|+|++||..+.....  .....+  +.......-.+...+...|+|++.+..-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTS
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            4667899999988 5644 6999999999864321  111112  2223333444555677789999998753

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=9.2e-07  Score=58.90  Aligned_cols=72  Identities=24%  Similarity=0.265  Sum_probs=49.2

Q ss_pred             eeecCCCeEEEEEEEcCCCC----CeEEEEECCEEccC------------CCceeEEEeCCEEEEEEccCCCCCCeEEEE
Q psy12422        199 KTIDDGQCLDLSAVVKGDPE----PRVSWTKNGQPLNS------------SNILDLKYKNGVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~----p~i~W~~~g~~~~~------------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      ++...|++++|.|.......    ..+.|.+++..+..            ..+.... ..+..+|.|.+++.+|+|.|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeec-cCCcEEEEECcCChHHCeEEEE
Confidence            57789999999998753221    34788887655421            1122221 2234589999999999999999


Q ss_pred             EEEcCCCce
Q psy12422        263 TATNSLGTA  271 (356)
Q Consensus       263 ~a~n~~g~~  271 (356)
                      .+.+..+..
T Consensus        83 ~V~~~~~~~   91 (105)
T d1dr9a1          83 VVLKYEKDA   91 (105)
T ss_dssp             EEEECCTTS
T ss_pred             EEEeCCCCC
Confidence            998765544

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.20  E-value=2.8e-06  Score=56.97  Aligned_cols=60  Identities=20%  Similarity=0.258  Sum_probs=42.8

Q ss_pred             CCceEEEEEeccC-----CCCeeEEeeC--CEEc----c---------cCCeeEEecCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTK-----PPPTVKWYKG--NREL----S---------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~-----p~~~v~W~k~--g~~l----~---------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|...+.     ....+.||+.  |+..    .         ..++.....+..+.|+|.+++.+|+|.|.|..
T Consensus        16 G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          16 GESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             TSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCceEEEEe
Confidence            8999999987542     2346899983  2211    0         12344556667789999999999999999954

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.3e-06  Score=56.36  Aligned_cols=72  Identities=17%  Similarity=0.223  Sum_probs=47.8

Q ss_pred             ceeecCCCeEEEEEEEcCCC--CCeEEEEEC--CEE---c-c--------CCCceeEE--EeCCEEEEEEccCCCCCCeE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDP--EPRVSWTKN--GQP---L-N--------SSNILDLK--YKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p--~p~i~W~~~--g~~---~-~--------~~~~~~~~--~~~~~~~L~i~~v~~~d~G~  259 (356)
                      .+.+.+|++++|.|......  ...+.|+|.  +..   + .        ...+....  ...+...|.|.+++.+|+|.
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~   84 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH   84 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence            45788999999999875332  345789872  111   0 0        01222222  23456889999999999999


Q ss_pred             EEEEEEcCCC
Q psy12422        260 YVCTATNSLG  269 (356)
Q Consensus       260 Y~C~a~n~~g  269 (356)
                      |.|.+.....
T Consensus        85 Y~C~v~~~~~   94 (108)
T d1hkfa_          85 YWCRIYRPSD   94 (108)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEEecCCC
Confidence            9998875443

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.20  E-value=3.6e-06  Score=56.41  Aligned_cols=61  Identities=20%  Similarity=0.337  Sum_probs=41.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEE---c----------c----cCCeeEEe-cCCeEEEEEeeCCCCCCeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRE---L----------S----KRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVA   60 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~---l----------~----~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a   60 (356)
                      |++|+|.|...+. ...+.|||.  |+.   |          .    ..++.... .+..+.|+|.+++.+|+|.|.|.+
T Consensus        14 G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~   92 (111)
T d2esve1          14 GQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVYFCAS   92 (111)
T ss_dssp             TCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCceEEEee
Confidence            7999999986443 457899983  211   1          0    11232222 234578999999999999999987


Q ss_pred             Ee
Q psy12422         61 TN   62 (356)
Q Consensus        61 ~n   62 (356)
                      ..
T Consensus        93 ~~   94 (111)
T d2esve1          93 SQ   94 (111)
T ss_dssp             ES
T ss_pred             eC
Confidence            54

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.20  E-value=2.2e-06  Score=58.05  Aligned_cols=74  Identities=20%  Similarity=0.342  Sum_probs=49.7

Q ss_pred             CCceeecCCCeEEEEEEEcC-CCCCeEEEEE---CCEEcc-------C-----CCceeEEE--eCCEEEEEEccCCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKG-DPEPRVSWTK---NGQPLN-------S-----SNILDLKY--KNGVASLQIQEVFPEDE  257 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~---~g~~~~-------~-----~~~~~~~~--~~~~~~L~i~~v~~~d~  257 (356)
                      +..+.+.+|++|+|.|.... .....+.|++   ++.+..       .     ..+.....  ......|.|.+++.+|+
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS   85 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccc
Confidence            45678999999999998853 4445688998   221110       0     01222222  23457899999999999


Q ss_pred             eEEEEEEEcCCC
Q psy12422        258 GVYVCTATNSLG  269 (356)
Q Consensus       258 G~Y~C~a~n~~g  269 (356)
                      |.|.|.+....+
T Consensus        86 a~YyCa~~~~~~   97 (115)
T d1fo0a_          86 AVYFCAMRGDYG   97 (115)
T ss_dssp             EEEEEEEECCCT
T ss_pred             ccccceeecCCC
Confidence            999998765443

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.20  E-value=2.2e-06  Score=57.59  Aligned_cols=71  Identities=13%  Similarity=0.179  Sum_probs=48.2

Q ss_pred             CCceeecCCCeEEEEEEEcCCC-CCeEEEEE--CCEEcc----------C--CCceeEEEeCCEEEEEEccCCCCCCeEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP-EPRVSWTK--NGQPLN----------S--SNILDLKYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p-~p~i~W~~--~g~~~~----------~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      |..+.+.+|++++|.|...+.. ...+.|++  .|..+.          .  ..+.....+.....|+|.+++.+|+|.|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            3456789999999999986544 34599998  222221          0  0112222234457899999999999999


Q ss_pred             EEEEEc
Q psy12422        261 VCTATN  266 (356)
Q Consensus       261 ~C~a~n  266 (356)
                      .|.+..
T Consensus        85 yCa~~~   90 (112)
T d1kgcd1          85 YCILPL   90 (112)
T ss_dssp             EEECCC
T ss_pred             eeeEec
Confidence            997644

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.20  E-value=2.9e-06  Score=56.76  Aligned_cols=63  Identities=16%  Similarity=0.215  Sum_probs=43.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------------ccCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------------SKRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------------~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|.....-...+.|||.  |+.+             ...++...  .....+.|+|.+++.+|+|.|.|.+...
T Consensus        15 G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          15 EDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALSGG   94 (110)
T ss_dssp             TEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEEET
T ss_pred             CCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccceeecCC
Confidence            78999999875544457999992  3211             01123222  2234578999999999999999988654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=6e-06  Score=53.32  Aligned_cols=79  Identities=22%  Similarity=0.277  Sum_probs=49.2

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeEEEeC--CEEEEEEccCCCCCCeEEEEEE
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDLKYKN--GVASLQIQEVFPEDEGVYVCTA  264 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a  264 (356)
                      ||.+.+..   ....|+.++|.|.+.|+ |. ..|+|.+||..+...........+  .........+...+...|+|++
T Consensus         3 PP~V~v~~---~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V   79 (94)
T d1t7va1           3 PPSVVVTS---HQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHV   79 (94)
T ss_dssp             CCEEEEEE---EECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEE
T ss_pred             CCEeEEec---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEE
Confidence            45554422   22357899999999884 54 359999999987654322222221  1233334445566677899999


Q ss_pred             EcCCCc
Q psy12422        265 TNSLGT  270 (356)
Q Consensus       265 ~n~~g~  270 (356)
                      .+..-.
T Consensus        80 ~H~sl~   85 (94)
T d1t7va1          80 QHSSLA   85 (94)
T ss_dssp             EETTCS
T ss_pred             EECCCC
Confidence            987654

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.19  E-value=2.1e-06  Score=55.98  Aligned_cols=64  Identities=14%  Similarity=0.249  Sum_probs=42.9

Q ss_pred             CCceEEEEEeccC-C-CCeeEEeeCCEEcccCCe---eEEecCCeEE-EEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-P-PPTVKWYKGNRELSKRDY---SMSYSDGVVS-MEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~~---~~~~~~~~~~-L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |++++|.|.+.|. | ...|+|++||+++.....   .....++.+. .....+..++.+.|+|++.+..
T Consensus        17 ~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          17 GQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             TSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECC
Confidence            5788999999875 4 357999999998864321   1234455442 2223344567778999998763

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=3.3e-06  Score=55.20  Aligned_cols=64  Identities=16%  Similarity=0.225  Sum_probs=42.9

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccCCee--EEecCCeEE-EEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDYS--MSYSDGVVS-MEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~~--~~~~~~~~~-L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+.++|.|.+.|. |. ..|+|++||+++......  ....++.++ .....+..++.+.|+|.+.+..
T Consensus        18 ~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          18 GKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             TSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCC
Confidence            5778999999775 44 478999999998754322  234444432 2223345567778999998763

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.18  E-value=3.3e-06  Score=56.89  Aligned_cols=73  Identities=22%  Similarity=0.390  Sum_probs=49.2

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEE--eCCEEEEEEccCCCCCCeE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKY--KNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~--~~~~~~L~i~~v~~~d~G~  259 (356)
                      |..+.+.+|++++|.|...+. ...+.|++  .|..+.            ...+..+..  ......|.|.+++.+|+|.
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL   85 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence            456789999999999998653 34689998  222110            011222222  2345789999999999999


Q ss_pred             EEEEEEcCCC
Q psy12422        260 YVCTATNSLG  269 (356)
Q Consensus       260 Y~C~a~n~~g  269 (356)
                      |.|-+....+
T Consensus        86 YyCa~~~~~~   95 (115)
T d1ogad1          86 YLCAGAGSQG   95 (115)
T ss_dssp             EEEEEECTTS
T ss_pred             EcccccCCCC
Confidence            9998765443

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.5e-06  Score=57.96  Aligned_cols=62  Identities=16%  Similarity=0.098  Sum_probs=41.1

Q ss_pred             CCceEEEEEeccCCCC---eeEEeeC--CEE---cc----c-------CCe--eEEecCCeEEEEEeeCCCCCCeEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPP---TVKWYKG--NRE---LS----K-------RDY--SMSYSDGVVSMEIIDCKPEDSGEYKCV   59 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~---~v~W~k~--g~~---l~----~-------~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~   59 (356)
                      |++|+|.|.....-.+   .+.|||.  |+.   +.    .       .++  .....+..+.|+|.+++.+|+|.|.|.
T Consensus        14 g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   93 (118)
T d1i8lc_          14 RGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICK   93 (118)
T ss_dssp             SSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCEEEEEE
T ss_pred             CCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCEEEEEe
Confidence            6899999998432222   4889993  221   10    0       011  123344567999999999999999998


Q ss_pred             EEe
Q psy12422         60 ATN   62 (356)
Q Consensus        60 a~n   62 (356)
                      +..
T Consensus        94 ~~~   96 (118)
T d1i8lc_          94 VEL   96 (118)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            764

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.17  E-value=2.1e-06  Score=57.62  Aligned_cols=71  Identities=20%  Similarity=0.267  Sum_probs=49.2

Q ss_pred             CCceeecCCCeEEEEEEEcCCCC--CeEEEEE--CCEEcc------------CCCceeEEE--eCCEEEEEEccCCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPE--PRVSWTK--NGQPLN------------SSNILDLKY--KNGVASLQIQEVFPEDE  257 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~--~g~~~~------------~~~~~~~~~--~~~~~~L~i~~v~~~d~  257 (356)
                      |..+++.+|++++|.|...+...  ..+.|++  .+..+.            ..++.....  ......|.|.+++.+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            44578999999999999876442  3489998  222111            112333333  24467999999999999


Q ss_pred             eEEEEEEEc
Q psy12422        258 GVYVCTATN  266 (356)
Q Consensus       258 G~Y~C~a~n  266 (356)
                      |.|.|.+.+
T Consensus        87 a~YyCA~~~   95 (111)
T d1cd0a_          87 ADYYCQSYD   95 (111)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEeecc
Confidence            999997654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3e-06  Score=54.58  Aligned_cols=63  Identities=16%  Similarity=0.304  Sum_probs=42.1

Q ss_pred             CCceEEEEEecc-CCCC-eeEEeeCCEEcccC----CeeEEecCCeEE-EEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGST-KPPP-TVKWYKGNRELSKR----DYSMSYSDGVVS-MEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~-~v~W~k~g~~l~~~----~~~~~~~~~~~~-L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      ++.++|.|.+.| +|.. .|+|+|||+.+...    .......++.+. .....+...|...|+|.+.+.
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          15 SSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             SSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             CCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence            357899999988 4654 89999999998632    112234444432 223344556777899999886

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.16  E-value=4.3e-06  Score=56.11  Aligned_cols=70  Identities=19%  Similarity=0.277  Sum_probs=49.4

Q ss_pred             CCceeecCCCeEEEEEEEcCCC------CCeEEEEE--CCEEc------------cCCCceeEEEeCCEEEEEEccCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDP------EPRVSWTK--NGQPL------------NSSNILDLKYKNGVASLQIQEVFPE  255 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p------~p~i~W~~--~g~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~  255 (356)
                      |..+.+.+|++++|.|.+.+.-      ...+.|++  .|..+            ..........++....|.|.+++.+
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~   87 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAE   87 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccC
Confidence            4566889999999999875421      23489998  22211            1123444455666789999999999


Q ss_pred             CCeEEEEEEE
Q psy12422        256 DEGVYVCTAT  265 (356)
Q Consensus       256 d~G~Y~C~a~  265 (356)
                      |+|+|.|-+.
T Consensus        88 Dsa~YyCA~~   97 (113)
T d1q9ra1          88 DLAVYYCKQS   97 (113)
T ss_dssp             GCEEEEEEEC
T ss_pred             CCeEEEeccc
Confidence            9999999654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.15  E-value=4.7e-06  Score=56.07  Aligned_cols=62  Identities=18%  Similarity=0.306  Sum_probs=41.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEcc----------------cCCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRELS----------------KRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l~----------------~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|..... ...+.|||.  |+.+.                ..++... ..+..+.|+|.+++.+|+|.|.|.+.
T Consensus        15 G~~v~l~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~   93 (113)
T d1j8he1          15 GEKVFLECVQDMD-HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMYLCASS   93 (113)
T ss_dssp             TCCEEECEEESSC-CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEcCC-ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccEEeeEc
Confidence            7999999987432 457899992  21110                0122222 23445689999999999999999886


Q ss_pred             eC
Q psy12422         62 NK   63 (356)
Q Consensus        62 n~   63 (356)
                      ..
T Consensus        94 ~~   95 (113)
T d1j8he1          94 ST   95 (113)
T ss_dssp             CT
T ss_pred             cC
Confidence            53

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.14  E-value=4.9e-06  Score=55.86  Aligned_cols=61  Identities=11%  Similarity=0.308  Sum_probs=40.7

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--C-EE--c---cc----------CCeeE-EecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--N-RE--L---SK----------RDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g-~~--l---~~----------~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++++|.|..... ...+.|||.  | .+  |   ..          .++.. ........|+|.+++.+|+|.|.|.+.
T Consensus        14 G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavYyCA~~   92 (112)
T d2bnub1          14 GQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASS   92 (112)
T ss_dssp             TCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEEEEeec
Confidence            7999999987533 457999992  2 21  1   00          11111 122334589999999999999999876


Q ss_pred             e
Q psy12422         62 N   62 (356)
Q Consensus        62 n   62 (356)
                      .
T Consensus        93 ~   93 (112)
T d2bnub1          93 Y   93 (112)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.14  E-value=3.4e-06  Score=57.49  Aligned_cols=62  Identities=15%  Similarity=0.281  Sum_probs=43.0

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEc------------------ccCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NREL------------------SKRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l------------------~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++++|.|.+.|..  ...+.|||.  |+.+                  ...++.+..  ....+.|+|.+++.+|+|.|
T Consensus        16 g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~Y   95 (123)
T d1hxmb1          16 SKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATY   95 (123)
T ss_dssp             TCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccccCcEE
Confidence            78999999997643  346899983  2111                  012344432  33467899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|.+..
T Consensus        96 yCA~~~  101 (123)
T d1hxmb1          96 YCALWE  101 (123)
T ss_dssp             EEEEEE
T ss_pred             EEeeeC
Confidence            998753

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.9e-06  Score=56.78  Aligned_cols=71  Identities=18%  Similarity=0.262  Sum_probs=45.8

Q ss_pred             CCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCcee--EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        203 DGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILD--LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       203 ~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~--~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      .++.++|.|.+.|+ |. ..|+|.+||..+.......  ....++    .+.|.|..-..+....|+|+|.+.......
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~k   97 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK   97 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccEee
Confidence            45678999999775 43 4699999998876432211  111122    245666655555677999999987654443

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.14  E-value=1.2e-05  Score=54.02  Aligned_cols=73  Identities=22%  Similarity=0.379  Sum_probs=48.2

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE---CCEEcc---CCC------ceeE---EEeCCEEEEEEccCCCCCCeEE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK---NGQPLN---SSN------ILDL---KYKNGVASLQIQEVFPEDEGVY  260 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~---~g~~~~---~~~------~~~~---~~~~~~~~L~i~~v~~~d~G~Y  260 (356)
                      |..+.+.+|++++|.|..... ...+.|++   ++.+..   ...      ....   ........|.|.+++.+|+|.|
T Consensus         8 P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTY   86 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEE
T ss_pred             CCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEE
Confidence            456788999999999998643 45689998   221110   000      0000   0112346899999999999999


Q ss_pred             EEEEEcCCC
Q psy12422        261 VCTATNSLG  269 (356)
Q Consensus       261 ~C~a~n~~g  269 (356)
                      .|.+....+
T Consensus        87 yCa~~~~~~   95 (113)
T d1h5ba_          87 FCAAEASSG   95 (113)
T ss_dssp             EEEEECSSS
T ss_pred             EEEecCCCC
Confidence            998876544

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.12  E-value=1.3e-07  Score=61.66  Aligned_cols=64  Identities=20%  Similarity=0.331  Sum_probs=43.6

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------------ccCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------------SKRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------------~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|...+. ...+.|||.  |+.+             ...++...  .....+.|+|.+++.+|+|.|.|.+...
T Consensus         8 G~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~~   86 (96)
T d1ymmd1           8 GENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTT   86 (96)
T ss_dssp             CCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEET
T ss_pred             CCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEeEecC
Confidence            8999999987543 457999983  3221             01122222  2234468999999999999999988765


Q ss_pred             Cc
Q psy12422         64 HG   65 (356)
Q Consensus        64 ~g   65 (356)
                      .|
T Consensus        87 ~g   88 (96)
T d1ymmd1          87 SG   88 (96)
T ss_dssp             TS
T ss_pred             CC
Confidence            44

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.12  E-value=2e-06  Score=57.84  Aligned_cols=63  Identities=11%  Similarity=0.296  Sum_probs=41.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------cc---------CCeeE-EecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------SK---------RDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------~~---------~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|..... ...+.|||.  |+.+       ..         ..+.. ...+..+.|+|.+++.+|+|.|.|.+.
T Consensus        13 G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~   91 (112)
T d2cdeb1          13 GKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLCASS   91 (112)
T ss_dssp             TCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEEEEEEE
T ss_pred             CCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccEEEEEe
Confidence            7899999997432 457899993  2211       00         11111 123345689999999999999999887


Q ss_pred             eCC
Q psy12422         62 NKH   64 (356)
Q Consensus        62 n~~   64 (356)
                      ...
T Consensus        92 ~~~   94 (112)
T d2cdeb1          92 ENI   94 (112)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=7.3e-06  Score=54.36  Aligned_cols=63  Identities=16%  Similarity=0.275  Sum_probs=43.7

Q ss_pred             CCceEEEEEeccC--CCCeeEEeeC--CE----Ecc------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEEEE
Q psy12422          1 MQNVIKVKVGSTK--PPPTVKWYKG--NR----ELS------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEYKC   58 (356)
Q Consensus         1 g~~v~l~C~~~g~--p~~~v~W~k~--g~----~l~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C   58 (356)
                      |++|+|.|...+.  ....+.|+|.  |+    .+.            .+++.+.  ...+.++|+|.+++.+|+|.|.|
T Consensus        10 G~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa~YyC   89 (110)
T d1u9ka_          10 GQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSGLYRC   89 (110)
T ss_dssp             TCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCEEEEE
Confidence            8999999998643  3456789983  22    111            1122332  23566799999999999999999


Q ss_pred             EEEeC
Q psy12422         59 VATNK   63 (356)
Q Consensus        59 ~a~n~   63 (356)
                      .....
T Consensus        90 a~~~~   94 (110)
T d1u9ka_          90 VIYHP   94 (110)
T ss_dssp             EEECT
T ss_pred             EEeCC
Confidence            87554

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.09  E-value=8.8e-06  Score=52.74  Aligned_cols=72  Identities=17%  Similarity=0.140  Sum_probs=43.5

Q ss_pred             cCCCeEEEEEEEcCCCC--CeEEEEECCEEccCCCcee---EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        202 DDGQCLDLSAVVKGDPE--PRVSWTKNGQPLNSSNILD---LKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~p~--p~i~W~~~g~~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      ..|+..+|.|.+.|+-+  ..|.|.+||..+..+....   ...++.........+..++...|+|++.+..-..-.
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~~p~   90 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPI   90 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCSSCE
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCCCCc
Confidence            34667789999987544  4599999998876542211   111222333444455677788999999988654433

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3e-06  Score=55.97  Aligned_cols=72  Identities=18%  Similarity=0.310  Sum_probs=47.2

Q ss_pred             cCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeE-EEeCCE----EEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        202 DDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDL-KYKNGV----ASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       202 ~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~-~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      ..+.+++|.|.+.| +|.. .|+|++||..+........ ...++.    +.|.|..-.......|+|++.+.....+.
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~~   97 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED   97 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEEe
Confidence            44567999999977 5654 5999999999875432211 222322    45666554444567899999998654443

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.08  E-value=3.1e-06  Score=56.60  Aligned_cols=72  Identities=18%  Similarity=0.288  Sum_probs=48.4

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------C------CCceeEEE--eCCEEEEEEccCCCCCCeE
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------S------SNILDLKY--KNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------~------~~~~~~~~--~~~~~~L~i~~v~~~d~G~  259 (356)
                      +..+.+.+|++++|.|.....-...+.|++  .|..+.      .      ..++....  ......|.|.++..+|+|.
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~   86 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAV   86 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcc
Confidence            455689999999999988655556799998  222111      0      01111111  1234679999999999999


Q ss_pred             EEEEEEcC
Q psy12422        260 YVCTATNS  267 (356)
Q Consensus       260 Y~C~a~n~  267 (356)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (110)
T d1ac6a_          87 YYCALSGG   94 (110)
T ss_dssp             EEEEEEET
T ss_pred             cceeecCC
Confidence            99977654

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.08  E-value=3.6e-06  Score=56.74  Aligned_cols=62  Identities=18%  Similarity=0.315  Sum_probs=41.5

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc-------cc---------CCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL-------SK---------RDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l-------~~---------~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|... .....+.|||.  |+.+       ..         ..+... ..+..++|+|.+++.+|+|.|.|.+.
T Consensus        14 G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~YyCa~~   92 (114)
T d1ogae1          14 GQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASS   92 (114)
T ss_dssp             TCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEE
T ss_pred             CCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeEEEeec
Confidence            79999999985 33467999983  2111       00         111111 22345689999999999999999776


Q ss_pred             eC
Q psy12422         62 NK   63 (356)
Q Consensus        62 n~   63 (356)
                      ..
T Consensus        93 ~~   94 (114)
T d1ogae1          93 SR   94 (114)
T ss_dssp             SS
T ss_pred             cC
Confidence            44

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.07  E-value=9.3e-06  Score=52.61  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=42.3

Q ss_pred             CCceEEEEEeccC-C-CCeeEEeeCCEEcccCC---eeEEecCCeEEE-EEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-P-PPTVKWYKGNRELSKRD---YSMSYSDGVVSM-EIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p-~~~v~W~k~g~~l~~~~---~~~~~~~~~~~L-~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+.++|.|.+.|+ | ...|+|++||+.+....   ......++.+.+ ....+..++...|+|.+.+..
T Consensus        17 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          17 REPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIG   86 (98)
T ss_dssp             SCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCC
Confidence            4678999999885 4 45799999999986431   123344554422 122334556668999998864

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.07  E-value=7.7e-06  Score=52.82  Aligned_cols=77  Identities=10%  Similarity=0.127  Sum_probs=51.4

Q ss_pred             CCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEe-CCEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        189 PPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYK-NGVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       189 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      +|.+...+. -.|..|++|+|.|... .....+.++|+|.............. .....+.|.+++..|+|.|.|.-...
T Consensus         2 KPsLsa~P~-~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeCC-CccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            356655554 3688999999999975 34567888987743221111111111 12357999999999999999987644

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.07  E-value=6e-06  Score=55.45  Aligned_cols=62  Identities=21%  Similarity=0.365  Sum_probs=42.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEc----------------ccCCeeEE-ecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NREL----------------SKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l----------------~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|..... ...+.|||.  |+.+                ...++... ..+..+.|+|.+++.+|+|.|.|.+.
T Consensus        16 G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   94 (113)
T d1nfdb1          16 GGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASS   94 (113)
T ss_dssp             TCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEEECEEEE
T ss_pred             CCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCceeEEEEee
Confidence            7999999987433 357999993  2111                01122222 33445789999999999999999876


Q ss_pred             eC
Q psy12422         62 NK   63 (356)
Q Consensus        62 n~   63 (356)
                      ..
T Consensus        95 ~~   96 (113)
T d1nfdb1          95 LR   96 (113)
T ss_dssp             SS
T ss_pred             cC
Confidence            44

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.06  E-value=3.1e-05  Score=50.54  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=50.6

Q ss_pred             ecCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeEEEe-CCE----EEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        201 IDDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDLKYK-NGV----ASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       201 v~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~~~~-~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      +..|+..+|.|.+.|+ |. ..|.|.+||..+........... ++.    +.|.|   ..++...|+|++.+..-....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~l~~p~   91 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEPDRYTA   91 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETTTTEEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCCCCCCE
Confidence            3457888999999885 43 35999999998764333222222 221    33444   455666899999998776666


Q ss_pred             EEEEecC
Q psy12422        274 KCKLTPL  280 (356)
Q Consensus       274 ~~~l~p~  280 (356)
                      .....|.
T Consensus        92 ~~~w~~~   98 (103)
T d1hdma1          92 IAYWVPR   98 (103)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            6666544

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.06  E-value=1.9e-05  Score=53.62  Aligned_cols=70  Identities=21%  Similarity=0.344  Sum_probs=48.4

Q ss_pred             CceeecCCCeEEEEEEEcCCC--CCeEEEEE--CCEEcc-----------------CCCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTK--NGQPLN-----------------SSNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~--~g~~~~-----------------~~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ..++..+|++++|.|.+.|..  ...+.|++  .|..+.                 ...++....+  .....|.|.+++
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            456788899999999998754  34589987  221110                 0123444433  345789999999


Q ss_pred             CCCCeEEEEEEEc
Q psy12422        254 PEDEGVYVCTATN  266 (356)
Q Consensus       254 ~~d~G~Y~C~a~n  266 (356)
                      .+|+|.|.|-+..
T Consensus        89 ~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          89 KQDIATYYCALWE  101 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeeeC
Confidence            9999999997643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=2.1e-05  Score=53.14  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=46.7

Q ss_pred             CceeecCCCeEEEEEEEcCCC-CC--eEEEEE--CCEEcc-------C--------CCceeEEEeCCEEEEEEccCCCCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP-EP--RVSWTK--NGQPLN-------S--------SNILDLKYKNGVASLQIQEVFPED  256 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p-~p--~i~W~~--~g~~~~-------~--------~~~~~~~~~~~~~~L~i~~v~~~d  256 (356)
                      ..+.+.+|++++|.|.....- ..  .+.|++  .|....       .        ........+.....|.|.+++.+|
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   86 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVD   86 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcccc
Confidence            345778899999999985332 22  378998  222110       0        011123344566899999999999


Q ss_pred             CeEEEEEEEc
Q psy12422        257 EGVYVCTATN  266 (356)
Q Consensus       257 ~G~Y~C~a~n  266 (356)
                      +|.|.|.+..
T Consensus        87 sa~YyCa~~~   96 (117)
T d1dqta_          87 TGLYLCKVEL   96 (117)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEeEEEEEec
Confidence            9999997753

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.06  E-value=1.1e-05  Score=51.52  Aligned_cols=65  Identities=18%  Similarity=0.186  Sum_probs=41.9

Q ss_pred             CCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        203 DGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       203 ~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      .+..++|.|.+.|+ |. ..|+|++||..+...........++    .+.|.+   ..++...|+|++.+..-.
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v---~~~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEV---KRGDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEE---CCCCCCEEEEEEEeCCCC
Confidence            35578999999885 54 3599999998876442221111111    134544   345667899999987543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.05  E-value=1.1e-05  Score=52.31  Aligned_cols=64  Identities=14%  Similarity=0.284  Sum_probs=42.2

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccCCe---eEEecCCeEE-EEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDY---SMSYSDGVVS-MEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~---~~~~~~~~~~-L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+..+|.|.+.|. |. ..|+|++||..+.....   .....++.++ +....+..++...|+|.+.+..
T Consensus        18 ~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          18 QHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             CCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            3567899999774 44 37899999999864321   1334455443 3334566778889999998863

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.05  E-value=1.1e-05  Score=54.67  Aligned_cols=62  Identities=19%  Similarity=0.234  Sum_probs=41.5

Q ss_pred             CCceEEEEEeccC--CCCeeEEeeC--CEE---cc--------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGSTK--PPPTVKWYKG--NRE---LS--------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~g~--p~~~v~W~k~--g~~---l~--------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      |++|+|.|.+.+.  ....+.|||.  |+.   |.              ..++.+.  .....+.|+|.+++.+|+|.|.
T Consensus        16 G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~Yy   95 (120)
T d1ypzf1          16 DETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYY   95 (120)
T ss_dssp             TSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEE
T ss_pred             CCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccccceeEE
Confidence            7899999997543  2346899992  211   10              0112222  2345678999999999999999


Q ss_pred             EEEEe
Q psy12422         58 CVATN   62 (356)
Q Consensus        58 C~a~n   62 (356)
                      |.+..
T Consensus        96 CA~~~  100 (120)
T d1ypzf1          96 CSYGE  100 (120)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            97754

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=4.6e-06  Score=53.96  Aligned_cols=67  Identities=13%  Similarity=0.138  Sum_probs=41.8

Q ss_pred             CCeEEEEEEEcCCCCC--eEEEEECCEEccCCCceeEE-E-eC-CEEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        204 GQCLDLSAVVKGDPEP--RVSWTKNGQPLNSSNILDLK-Y-KN-GVASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       204 g~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~~~~~~-~-~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      +..++|.|.+.|+-+.  .|+|.+||..+......... . .+ .........+...+...|+|++.+..-.
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~L~   86 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLP   86 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTTCS
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECcCC
Confidence            5679999999886544  48999999988754322111 1 11 1222222233445556899999987543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=2.1e-05  Score=46.87  Aligned_cols=67  Identities=15%  Similarity=0.281  Sum_probs=45.5

Q ss_pred             cCCCeEEEEEEEcCCCC--CeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        202 DDGQCLDLSAVVKGDPE--PRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~p~--p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ..|..+.|+|.....+.  ..-.|.|+|..+..+...     .....+.|..  .+++|.|.|+.. ....+++.+.
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~-----~~~tey~V~~--~D~SGeY~CVFl-~~P~~~a~Ie   78 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVDS--DDQWGEYSCVFL-PEPMGTANIQ   78 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEECG--GGCCEEEEEEEE-STTSCEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC-----CCceEEEEec--CCCCceEEEEEc-CCCcceeEEE
Confidence            45788899999966543  347899999999865322     2234567764  778999999854 3344444444

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.2e-06  Score=55.25  Aligned_cols=71  Identities=13%  Similarity=0.176  Sum_probs=43.3

Q ss_pred             eeecCCCeEEEEEEEcCCC---CCeEEEE--ECCE-Ecc---------C--CCce--eEEEeCCEEEEEEccCCCCCCeE
Q psy12422        199 KTIDDGQCLDLSAVVKGDP---EPRVSWT--KNGQ-PLN---------S--SNIL--DLKYKNGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p---~p~i~W~--~~g~-~~~---------~--~~~~--~~~~~~~~~~L~i~~v~~~d~G~  259 (356)
                      +.+..|++++|.|.....+   ...+.|+  ++.. .+.         .  ...+  ......+..+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            4678899999999985332   2234443  3322 110         0  0000  11222334589999999999999


Q ss_pred             EEEEEEcCCC
Q psy12422        260 YVCTATNSLG  269 (356)
Q Consensus       260 Y~C~a~n~~g  269 (356)
                      |.|.+.....
T Consensus        84 Y~C~V~~~~~   93 (110)
T d1ncna_          84 YQCIIHHKKP   93 (110)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEEecCC
Confidence            9999865443

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=4.5e-06  Score=56.69  Aligned_cols=64  Identities=22%  Similarity=0.255  Sum_probs=40.5

Q ss_pred             CCceEEEEEecc---CCC---CeeEEeeCCE----Ec-c-----------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGST---KPP---PTVKWYKGNR----EL-S-----------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g---~p~---~~v~W~k~g~----~l-~-----------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|.|.|....   .+.   ..+.|++.+.    .+ .           ..++...  ...+.++|+|.+++.+|+|.|
T Consensus        15 G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y   94 (118)
T d1qfoa_          15 GSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTY   94 (118)
T ss_dssp             TSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEE
T ss_pred             CCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCChhHCEEE
Confidence            789999999741   111   2356777321    11 0           0122221  233567899999999999999


Q ss_pred             EEEEEeCC
Q psy12422         57 KCVATNKH   64 (356)
Q Consensus        57 ~C~a~n~~   64 (356)
                      .|++....
T Consensus        95 ~C~v~~~~  102 (118)
T d1qfoa_          95 NFRFEISD  102 (118)
T ss_dssp             EEEEECC-
T ss_pred             EEEEEeCC
Confidence            99997653

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.4e-06  Score=57.72  Aligned_cols=70  Identities=19%  Similarity=0.298  Sum_probs=45.7

Q ss_pred             ecCCCeEEEEEEEcC-CCC-CeEEEEECCEEccCCCcee---EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        201 IDDGQCLDLSAVVKG-DPE-PRVSWTKNGQPLNSSNILD---LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       201 v~~g~~~~l~C~~~g-~p~-p~i~W~~~g~~~~~~~~~~---~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      ...++.++|.|.+.+ +|. ..|.|.+||..+.......   ....++    .+.|.|..-.......|+|++.+....
T Consensus        16 ~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   94 (105)
T d1fp5a2          16 PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS   94 (105)
T ss_dssp             SSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTST
T ss_pred             HhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCC
Confidence            345678999999977 553 5699999999886543211   111112    245666655555667899999986553

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=2.4e-06  Score=56.16  Aligned_cols=77  Identities=16%  Similarity=0.340  Sum_probs=45.4

Q ss_pred             cCCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeEEEeCCE----EEEEEccCCCCCCeEEEEEEEcCCCceEEEE
Q psy12422        202 DDGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDLKYKNGV----ASLQIQEVFPEDEGVYVCTATNSLGTAETKC  275 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  275 (356)
                      ..++.++|.|.+.|+ |. ..|.|.+++........... ..++.    +.|.|..-... .+.|+|++.+..+......
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~-~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v~~   95 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAV-LQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASSTKVDK   95 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-EETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTEEEEE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccc-cCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCEEEEE
Confidence            357889999999874 43 35999877643221111111 22232    45666655543 5689999999888777666


Q ss_pred             EEecC
Q psy12422        276 KLTPL  280 (356)
Q Consensus       276 ~l~p~  280 (356)
                      .+.|.
T Consensus        96 ~i~p~  100 (102)
T d1mjuh2          96 KIEPR  100 (102)
T ss_dssp             ECCCC
T ss_pred             EecCC
Confidence            66543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.3e-06  Score=57.64  Aligned_cols=71  Identities=18%  Similarity=0.271  Sum_probs=44.2

Q ss_pred             CCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCcee--EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCceEE
Q psy12422        203 DGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILD--LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTAET  273 (356)
Q Consensus       203 ~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~--~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  273 (356)
                      .++.++|.|.+.|+ |. ..|.|.+||..+.......  ....++    .+.|.|..-.......|+|++.+.......
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~k   97 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK   97 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCccEEE
Confidence            36678999999884 43 3599999999887543211  111122    134555444333456799999997654433

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.02  E-value=6.2e-06  Score=55.53  Aligned_cols=71  Identities=18%  Similarity=0.243  Sum_probs=46.4

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------CCC---------ceeEE-EeCCEEEEEEccCCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------SSN---------ILDLK-YKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------~~~---------~~~~~-~~~~~~~L~i~~v~~~d~  257 (356)
                      |..+.+.+|++++|.|... .....+.|++  .|..+.      ...         ..... .......|.|.++..+|+
T Consensus         6 P~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DS   84 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPT   84 (114)
T ss_dssp             CSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCC
T ss_pred             CCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCc
Confidence            4456799999999999985 3345799997  221110      000         01111 112345799999999999


Q ss_pred             eEEEEEEEcC
Q psy12422        258 GVYVCTATNS  267 (356)
Q Consensus       258 G~Y~C~a~n~  267 (356)
                      |.|.|.+...
T Consensus        85 a~YyCa~~~~   94 (114)
T d1ogae1          85 AFYLCASSSR   94 (114)
T ss_dssp             EEEEEEEESS
T ss_pred             eeEEEeeccC
Confidence            9999976644

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.02  E-value=1.2e-05  Score=52.36  Aligned_cols=64  Identities=16%  Similarity=0.263  Sum_probs=40.8

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccCC---eeEEecCCeEEE-EEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRD---YSMSYSDGVVSM-EIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~---~~~~~~~~~~~L-~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+..+|.|.+.|. |. ..|+|++||+++..+.   ......++.+++ ....+...+...|+|.+.+..
T Consensus        19 ~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s   88 (101)
T d1fnga1          19 GEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWG   88 (101)
T ss_dssp             TSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEECC
Confidence            5678899999775 54 4799999999886431   112344544321 122233455668999998763

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.01  E-value=8.1e-06  Score=52.72  Aligned_cols=62  Identities=10%  Similarity=-0.015  Sum_probs=42.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|... .....+.++|+|...........  .......+.|.+++.+|+|.|.|.....
T Consensus        16 G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          16 EETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             TCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            78999999974 33567899998754321111111  1223357999999999999999988654

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=1.4e-05  Score=50.84  Aligned_cols=64  Identities=19%  Similarity=0.192  Sum_probs=41.2

Q ss_pred             cCCCeEEEEEEEcCCCCC--eEEEEECCEEccCCCcee-EEEe--CC---EEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        202 DDGQCLDLSAVVKGDPEP--RVSWTKNGQPLNSSNILD-LKYK--NG---VASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~~~~-~~~~--~~---~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      ..++.++|.|.+.|+.+.  .|+|.+||..+..+.... ...+  +.   .+.|.|..   .+...|+|.+.+..
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYYTCHVYHQG   84 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTCEEEEECSS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEEEEEEEECC
Confidence            346789999999986544  489999999887543221 1111  11   13455543   34457999998764

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=2.5e-06  Score=56.04  Aligned_cols=77  Identities=14%  Similarity=0.229  Sum_probs=48.2

Q ss_pred             cCCCeEEEEEEEcC-CCC-CeEEEEECCEEccCCCceeEEEeCC---EEEEEEccCCCCCCeEEEEEEEcCCCceEEEEE
Q psy12422        202 DDGQCLDLSAVVKG-DPE-PRVSWTKNGQPLNSSNILDLKYKNG---VASLQIQEVFPEDEGVYVCTATNSLGTAETKCK  276 (356)
Q Consensus       202 ~~g~~~~l~C~~~g-~p~-p~i~W~~~g~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  276 (356)
                      ..++.++|.|.+.| +|. ..|.|.++|.............++.   .+.|+|..-.. +.|.|+|++.+..........
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~~v~~~   96 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSSTAADKK   96 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTEEEEEE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCeeeEEE
Confidence            45789999999987 553 4699988875432111111111221   24677665554 367899999998877666655


Q ss_pred             Eec
Q psy12422        277 LTP  279 (356)
Q Consensus       277 l~p  279 (356)
                      +.|
T Consensus        97 i~p   99 (101)
T d1kcvh2          97 IEP   99 (101)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=1.7e-05  Score=47.80  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             CCceEEEEEec-cCCCCeeEEee-CCE---EcccC--CeeEEecC---CeEEEEEeeCCCCCCeEEEEEEEeCCceeE-E
Q psy12422          1 MQNVIKVKVGS-TKPPPTVKWYK-GNR---ELSKR--DYSMSYSD---GVVSMEIIDCKPEDSGEYKCVATNKHGTDE-T   69 (356)
Q Consensus         1 g~~v~l~C~~~-g~p~~~v~W~k-~g~---~l~~~--~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~-~   69 (356)
                      |+.+.|.|.+. -.-.|.++|-| +|+   +|...  .......+   ..+.|.+.++..+|.|.|+|.|.-..+..+ .
T Consensus        18 G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~vieSH   97 (104)
T d1xaua_          18 GELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSH   97 (104)
T ss_dssp             TSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChhheecc
Confidence            78999999993 33468999998 553   34321  12222222   346889999999999999999976555443 4


Q ss_pred             EEEEEE
Q psy12422         70 NCVVIV   75 (356)
Q Consensus        70 ~~~l~v   75 (356)
                      ++++.|
T Consensus        98 Svti~V  103 (104)
T d1xaua_          98 SVTIHV  103 (104)
T ss_dssp             CEEEEE
T ss_pred             eEEEEe
Confidence            455554

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.3e-05  Score=52.81  Aligned_cols=64  Identities=11%  Similarity=0.175  Sum_probs=41.8

Q ss_pred             CceEEEEEecc-CCCC-eeEEeeCCEEcccCC--eeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          2 QNVIKVKVGST-KPPP-TVKWYKGNRELSKRD--YSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         2 ~~v~l~C~~~g-~p~~-~v~W~k~g~~l~~~~--~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      .+++|.|.+.| .|.. .|+|++||+.+....  ......++.+    .|.|..-.-.....|+|.+.+...
T Consensus        22 ~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          22 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            46889999977 5554 689999999987532  1223344433    455544332335679999998754

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.98  E-value=1.2e-05  Score=54.56  Aligned_cols=62  Identities=13%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEcc-------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NRELS-------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l~-------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++++|+|...+..  ...+.|||.  |+.+.             .+++...  .....+.|+|.+++.+|+|.|.|...
T Consensus        16 G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~   95 (120)
T d1hxma1          16 GVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACD   95 (120)
T ss_dssp             TCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCceeecCcc
Confidence            79999999986543  346899983  22110             1233333  23456799999999999999999865


Q ss_pred             e
Q psy12422         62 N   62 (356)
Q Consensus        62 n   62 (356)
                      .
T Consensus        96 ~   96 (120)
T d1hxma1          96 T   96 (120)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.98  E-value=1.7e-05  Score=53.24  Aligned_cols=71  Identities=20%  Similarity=0.316  Sum_probs=47.2

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEccC---------------CCceeEE-EeCCEEEEEEccCCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLNS---------------SNILDLK-YKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~~---------------~~~~~~~-~~~~~~~L~i~~v~~~d~  257 (356)
                      |....+.+|++++|.|...+. ...+.|++  .|.....               ..+.... .......|+|.+++.+|+
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS   84 (113)
T ss_dssp             CSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence            445678999999999997542 35689998  2222110               1111111 123346899999999999


Q ss_pred             eEEEEEEEcC
Q psy12422        258 GVYVCTATNS  267 (356)
Q Consensus       258 G~Y~C~a~n~  267 (356)
                      |.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (113)
T d2ntsp1          85 ALYLCASSLA   94 (113)
T ss_dssp             EEEEEEEESS
T ss_pred             eeeeeeeeCC
Confidence            9999987653

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.7e-05  Score=51.13  Aligned_cols=64  Identities=14%  Similarity=0.261  Sum_probs=42.9

Q ss_pred             CCceEEEEEecc-CCC-CeeEEeeCCEEcccCCee--EEecCCeE-EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGST-KPP-PTVKWYKGNRELSKRDYS--MSYSDGVV-SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~~~--~~~~~~~~-~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+.++|.|.+.| +|. ..|+|++||+.+......  ....++.+ ......+...|...|+|.+.+..
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          15 GEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             TSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            578999999987 455 479999999988643211  22334433 23333445667778999998863

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.97  E-value=1.7e-05  Score=51.57  Aligned_cols=63  Identities=16%  Similarity=0.234  Sum_probs=40.8

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccCC---eeEEecCCeEEE-EEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRD---YSMSYSDGVVSM-EIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~---~~~~~~~~~~~L-~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |+..+|.|.+.|. |. ..|+|++||+++..+.   -.....++.+.+ ....+..+|...|+|++.+.
T Consensus        19 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          19 GQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHW   87 (99)
T ss_dssp             TSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             CCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            5678899999875 44 4799999999886431   112344444322 22233445666899999876

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=2.8e-05  Score=50.20  Aligned_cols=63  Identities=21%  Similarity=0.202  Sum_probs=38.5

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|.|+|.+.|..-  ..+.|+|.  |+.+      .            ..++.+..  ......|+|.+++.+|++.|
T Consensus         2 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAvY   81 (103)
T d1oari_           2 GASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVY   81 (103)
T ss_dssp             CCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSEE
T ss_pred             CCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEEE
Confidence            799999999987643  35889983  3332      1            12232322  23345899999999999999


Q ss_pred             EEEEEeC
Q psy12422         57 KCVATNK   63 (356)
Q Consensus        57 ~C~a~n~   63 (356)
                      .|.....
T Consensus        82 YCAr~~~   88 (103)
T d1oari_          82 YCARMWY   88 (103)
T ss_dssp             EEEEEEC
T ss_pred             EeEEECC
Confidence            9976443

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.95  E-value=2.6e-07  Score=60.19  Aligned_cols=71  Identities=23%  Similarity=0.394  Sum_probs=47.0

Q ss_pred             eeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------CCCceeEEE--eCCEEEEEEccCCCCCCeEEEE
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------SSNILDLKY--KNGVASLQIQEVFPEDEGVYVC  262 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C  262 (356)
                      .+|.+|++++|.|.... ....+.|+|  .|..+.            ...++....  ......|.|.+++.+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            46889999999998764 345699997  222211            011122211  1223579999999999999999


Q ss_pred             EEEcCCCc
Q psy12422        263 TATNSLGT  270 (356)
Q Consensus       263 ~a~n~~g~  270 (356)
                      .+....|.
T Consensus        82 A~~~~~g~   89 (96)
T d1ymmd1          82 ATDTTSGT   89 (96)
T ss_dssp             EEEETTSC
T ss_pred             eEecCCCC
Confidence            88766553

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.95  E-value=2.3e-05  Score=52.30  Aligned_cols=62  Identities=19%  Similarity=0.317  Sum_probs=41.8

Q ss_pred             CCceEEEEEeccC----CCCeeEEeeC--CEEcc-----------------cCCeeEEe--cCCeEEEEEeeCCCCCCeE
Q psy12422          1 MQNVIKVKVGSTK----PPPTVKWYKG--NRELS-----------------KRDYSMSY--SDGVVSMEIIDCKPEDSGE   55 (356)
Q Consensus         1 g~~v~l~C~~~g~----p~~~v~W~k~--g~~l~-----------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~   55 (356)
                      |++|.|.|.+.|.    +...+.|||.  |+.+.                 .+++.+..  ....+.|+|.+++.+|++.
T Consensus        15 G~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eDsAv   94 (120)
T d2agjh1          15 TQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTAT   94 (120)
T ss_dssp             SSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGGCEE
T ss_pred             CCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeeccceE
Confidence            7899999998653    2245789983  32210                 12333332  2345789999999999999


Q ss_pred             EEEEEEe
Q psy12422         56 YKCVATN   62 (356)
Q Consensus        56 Y~C~a~n   62 (356)
                      |.|....
T Consensus        95 YyCAr~~  101 (120)
T d2agjh1          95 YYCARTS  101 (120)
T ss_dssp             EEEEEEC
T ss_pred             EeeEecC
Confidence            9996543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=5.7e-06  Score=56.51  Aligned_cols=71  Identities=15%  Similarity=0.311  Sum_probs=45.6

Q ss_pred             CceeecCCCeEEEEEEEcC----CC---CCeEEEEECCEEccC-----------------CCceeEEE--eCCEEEEEEc
Q psy12422        197 TDKTIDDGQCLDLSAVVKG----DP---EPRVSWTKNGQPLNS-----------------SNILDLKY--KNGVASLQIQ  250 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g----~p---~p~i~W~~~g~~~~~-----------------~~~~~~~~--~~~~~~L~i~  250 (356)
                      ..+++.+|++|.|.|....    ..   ...+.|++....-..                 ..+..+..  ..+..+|.|.
T Consensus         9 ~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   88 (121)
T d2g5ra1           9 SSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIR   88 (121)
T ss_dssp             SEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             CEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEEC
Confidence            4578999999999999842    11   134789874322110                 01122211  1235689999


Q ss_pred             cCCCCCCeEEEEEEEcC
Q psy12422        251 EVFPEDEGVYVCTATNS  267 (356)
Q Consensus       251 ~v~~~d~G~Y~C~a~n~  267 (356)
                      +++.+|+|.|.|.+...
T Consensus        89 ~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          89 DARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             CCChHHCEEEEEEEEeC
Confidence            99999999999998643

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.8e-05  Score=53.53  Aligned_cols=71  Identities=15%  Similarity=0.165  Sum_probs=46.0

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC---eEEEEE--CCEEcc-------CC--------CceeEEEeCCEEEEEEccCCCCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP---RVSWTK--NGQPLN-------SS--------NILDLKYKNGVASLQIQEVFPED  256 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p---~i~W~~--~g~~~~-------~~--------~~~~~~~~~~~~~L~i~~v~~~d  256 (356)
                      ..+.+.+|+.++|.|.....-.+   .+.|+|  .|....       ..        .......+.....|.|.+++.+|
T Consensus         7 ~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   86 (118)
T d1i8lc_           7 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMD   86 (118)
T ss_dssp             SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGG
T ss_pred             CEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCC
Confidence            34567889999999998433222   488998  222110       00        00112223446789999999999


Q ss_pred             CeEEEEEEEcC
Q psy12422        257 EGVYVCTATNS  267 (356)
Q Consensus       257 ~G~Y~C~a~n~  267 (356)
                      +|.|.|.+...
T Consensus        87 sa~YyCa~~~~   97 (118)
T d1i8lc_          87 TGLYICKVELM   97 (118)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CEEEEEeEecc
Confidence            99999977643

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=6e-06  Score=55.54  Aligned_cols=70  Identities=20%  Similarity=0.381  Sum_probs=46.4

Q ss_pred             ceeecCCCeEEEEEEEcC--CCCCeEEEEE--CCEE---cc---C---------CCceeEEE--eCCEEEEEEccCCCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKG--DPEPRVSWTK--NGQP---LN---S---------SNILDLKY--KNGVASLQIQEVFPED  256 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g--~p~p~i~W~~--~g~~---~~---~---------~~~~~~~~--~~~~~~L~i~~v~~~d  256 (356)
                      ...+.+|++++|.|...+  +....+.|+|  .+..   +.   .         ..++....  ..+..+|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            356789999999998753  3345688997  2211   10   0         01222332  2345789999999999


Q ss_pred             CeEEEEEEEcC
Q psy12422        257 EGVYVCTATNS  267 (356)
Q Consensus       257 ~G~Y~C~a~n~  267 (356)
                      +|.|.|.+...
T Consensus        88 sg~Y~Cav~~~   98 (113)
T d1smoa_          88 SGLYQCVIYQP   98 (113)
T ss_dssp             CEEEEEEECCT
T ss_pred             CceEEEEEECC
Confidence            99999977544

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.8e-05  Score=51.36  Aligned_cols=62  Identities=11%  Similarity=0.017  Sum_probs=39.8

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeE---EecCCeEEEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSM---SYSDGVVSMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      |++|+|.|... .+...+..+|+|..........   ........+.|.+++..|+|.|+|.....
T Consensus        18 G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          18 GGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             TCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            79999999874 3355788999887654221111   11233457999999999999999988654

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=1.1e-05  Score=54.01  Aligned_cols=71  Identities=21%  Similarity=0.405  Sum_probs=46.4

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------C----CCceeEEEe-CCEEEEEEccCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------S----SNILDLKYK-NGVASLQIQEVFPED  256 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~----~~~~~~~~~-~~~~~L~i~~v~~~d  256 (356)
                      |....+.+|++++|.|...+. ...+.|+|  .|..+.            .    ..++..... .....|+|.+++.+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D   84 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELED   84 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCC
Confidence            455678999999999986432 35688987  221111            0    111222111 224689999999999


Q ss_pred             CeEEEEEEEcC
Q psy12422        257 EGVYVCTATNS  267 (356)
Q Consensus       257 ~G~Y~C~a~n~  267 (356)
                      +|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (111)
T d2esve1          85 SGVYFCASSQD   95 (111)
T ss_dssp             CEEEEEEEESS
T ss_pred             CceEEEeeeCC
Confidence            99999976543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.93  E-value=1.8e-05  Score=52.45  Aligned_cols=59  Identities=15%  Similarity=0.240  Sum_probs=41.8

Q ss_pred             CCceEEEEEeccCCCC--eeEEeeC--CEEc------c-----------cCCeeEEe--cCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGSTKPPP--TVKWYKG--NREL------S-----------KRDYSMSY--SDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~--~v~W~k~--g~~l------~-----------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      |+++.|.|.+.|....  .+.|+|.  |+.+      .           .+++.+..  ......|.|.+++.+|++.|.
T Consensus        15 G~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDtA~YY   94 (120)
T d1dn0b1          15 SETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYY   94 (120)
T ss_dssp             TSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccccEEE
Confidence            7999999999886443  5789983  3222      1           12344432  344568999999999999999


Q ss_pred             EE
Q psy12422         58 CV   59 (356)
Q Consensus        58 C~   59 (356)
                      |.
T Consensus        95 CA   96 (120)
T d1dn0b1          95 CA   96 (120)
T ss_dssp             EE
T ss_pred             EE
Confidence            94

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.92  E-value=5.1e-05  Score=50.25  Aligned_cols=71  Identities=18%  Similarity=0.365  Sum_probs=49.2

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------ccC-----------CCceeEEEe--CCEEEEEEccC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LNS-----------SNILDLKYK--NGVASLQIQEV  252 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~~-----------~~~~~~~~~--~~~~~L~i~~v  252 (356)
                      .....+++|+++.|+|.+.|+...  .+.|.+  .|..      +..           ..++.+..+  .+...|.|.++
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L   87 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence            345678999999999999987643  388877  2211      111           234445444  33467999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy12422        253 FPEDEGVYVCTATN  266 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n  266 (356)
                      +.+|++.|.|....
T Consensus        88 ~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          88 RPEDTAVYYCARDP  101 (122)
T ss_dssp             CGGGCEEEEEEEET
T ss_pred             CCCcceEEEEeecC
Confidence            99999999996543

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.2e-05  Score=50.62  Aligned_cols=64  Identities=16%  Similarity=0.151  Sum_probs=42.5

Q ss_pred             CceEEEEEeccC-CC-CeeEEeeCCEEcccCC---eeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          2 QNVIKVKVGSTK-PP-PTVKWYKGNRELSKRD---YSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         2 ~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~---~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      ++++|.|.+.|. |. ..|+|++||+++....   ......++.+    .|+|..-.-.....|+|.+.+...
T Consensus        21 ~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          21 AKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            568999999665 44 4799999999886431   1123345543    455654443456799999988643

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.5e-06  Score=55.32  Aligned_cols=76  Identities=12%  Similarity=0.097  Sum_probs=51.6

Q ss_pred             CCCeecccCCceeecCCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy12422        188 TPPQFANKLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       188 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      .+|.+...+.. .|..|++|+|.|... .+...+.++|+|.......... ........+.|.+++..|+|.|.|....
T Consensus         3 PkP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~-~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           3 PKPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEcc-CCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            45777776654 588999999999974 4455688899875432100000 0011224799999999999999998653

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.91  E-value=1.8e-05  Score=53.07  Aligned_cols=71  Identities=15%  Similarity=0.235  Sum_probs=46.5

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------C---------CCceeEE-EeCCEEEEEEccCCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------S---------SNILDLK-YKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------~---------~~~~~~~-~~~~~~~L~i~~v~~~d~  257 (356)
                      |....+.+|++++|.|.... -...+.|+|  .|..+.      .         ....... .......|.|.+++.+|+
T Consensus         7 P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   85 (113)
T d1j8he1           7 SRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQT   85 (113)
T ss_dssp             CSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCc
Confidence            45567889999999998742 245688998  222111      0         0111111 123346899999999999


Q ss_pred             eEEEEEEEcC
Q psy12422        258 GVYVCTATNS  267 (356)
Q Consensus       258 G~Y~C~a~n~  267 (356)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (113)
T d1j8he1          86 SMYLCASSST   95 (113)
T ss_dssp             EEEEEEEECT
T ss_pred             ccEEeeEccC
Confidence            9999987653

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.91  E-value=5e-05  Score=49.91  Aligned_cols=70  Identities=21%  Similarity=0.329  Sum_probs=48.6

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------cC----------CCceeEEEe--CCEEEEEEccCCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------NS----------SNILDLKYK--NGVASLQIQEVFPE  255 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~~----------~~~~~~~~~--~~~~~L~i~~v~~~  255 (356)
                      ...+++|+++.|.|.+.|+...  .+.|.+  .|..+      ..          ..++.+..+  .+...|.|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            3468899999999999987643  488887  22211      11          234444443  33578999999999


Q ss_pred             CCeEEEEEEEcC
Q psy12422        256 DEGVYVCTATNS  267 (356)
Q Consensus       256 d~G~Y~C~a~n~  267 (356)
                      |++.|.|.....
T Consensus        89 DtAvYyCAr~~~  100 (116)
T d7fabh1          89 DTAVYYCARNLI  100 (116)
T ss_dssp             GCEEEEEEEECS
T ss_pred             cceEEEeeeecC
Confidence            999999965443

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.90  E-value=3e-05  Score=51.28  Aligned_cols=62  Identities=15%  Similarity=0.302  Sum_probs=42.8

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c-----------cCCeeEEe--cCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S-----------KRDYSMSY--SDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~-----------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      ||++.|+|.+.|...  ..+.|+|.  |+.+      .           .+++.+..  ......|+|.+++.+|++.|.
T Consensus        14 g~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDtA~YY   93 (119)
T d1kxvc_          14 GGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYY   93 (119)
T ss_dssp             TCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCcceEe
Confidence            799999999987643  35789984  2211      1           12333332  234568999999999999999


Q ss_pred             EEEEe
Q psy12422         58 CVATN   62 (356)
Q Consensus        58 C~a~n   62 (356)
                      |....
T Consensus        94 CAr~~   98 (119)
T d1kxvc_          94 CKPSL   98 (119)
T ss_dssp             EEEEE
T ss_pred             eeecc
Confidence            97644

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.88  E-value=6.8e-05  Score=49.55  Aligned_cols=69  Identities=23%  Similarity=0.460  Sum_probs=47.9

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEEC--CEEc------cC----------CCceeEEEe--CCEEEEEEccCCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTKN--GQPL------NS----------SNILDLKYK--NGVASLQIQEVFPE  255 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~~--g~~~------~~----------~~~~~~~~~--~~~~~L~i~~v~~~  255 (356)
                      ...+.+|+++.|.|.+.|+...  .+.|+|-  |..+      ..          ..++.+..+  .....|.|.+++.+
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e   87 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD   87 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence            3468899999999999987643  3889872  2111      11          124455443  33568999999999


Q ss_pred             CCeEEEEEEEc
Q psy12422        256 DEGVYVCTATN  266 (356)
Q Consensus       256 d~G~Y~C~a~n  266 (356)
                      |++.|.|....
T Consensus        88 DtA~YYCAr~~   98 (119)
T d1kxvc_          88 DTAMYYCKPSL   98 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CcceEeeeecc
Confidence            99999996544

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.87  E-value=5e-05  Score=49.93  Aligned_cols=70  Identities=17%  Similarity=0.415  Sum_probs=48.3

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-----------CCCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-----------SSNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|+|.+.|+...  .+.|++  .|..      +.           ...++.+..+  .+...|.|.+++.
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            3568899999999999987533  378877  2211      11           1223444443  3356799999999


Q ss_pred             CCCeEEEEEEEcC
Q psy12422        255 EDEGVYVCTATNS  267 (356)
Q Consensus       255 ~d~G~Y~C~a~n~  267 (356)
                      +|++.|.|.....
T Consensus        89 eDtAvYYCA~~~~  101 (117)
T d1iqdb1          89 DDTAVYYCAVPDP  101 (117)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             CcceEEEEeEcCC
Confidence            9999999976543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.87  E-value=4.2e-05  Score=50.17  Aligned_cols=67  Identities=27%  Similarity=0.485  Sum_probs=47.4

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------c----------CCCceeEEEe--CCEEEEEEccCCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------N----------SSNILDLKYK--NGVASLQIQEVFPE  255 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~----------~~~~~~~~~~--~~~~~L~i~~v~~~  255 (356)
                      ...+++|+++.|+|.+.|+...  .+.|.+  .|..+      .          ...++.+..+  .+...|.|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            3468899999999999987643  488887  22221      1          1234555544  33468999999999


Q ss_pred             CCeEEEEEE
Q psy12422        256 DEGVYVCTA  264 (356)
Q Consensus       256 d~G~Y~C~a  264 (356)
                      |++.|.|-.
T Consensus        89 DtAvYYCAr   97 (117)
T d1c5db1          89 DTAIYFCTR   97 (117)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEec
Confidence            999999943

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.87  E-value=5.3e-05  Score=49.87  Aligned_cols=69  Identities=20%  Similarity=0.339  Sum_probs=48.0

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+...  .+.|+|  .|..      +. .          ..++.+..+  .+...|.|.+++
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~   86 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence            34578899999999999987644  488987  2221      11 1          123444443  345679999999


Q ss_pred             CCCCeEEEEEEE
Q psy12422        254 PEDEGVYVCTAT  265 (356)
Q Consensus       254 ~~d~G~Y~C~a~  265 (356)
                      .+|++.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (117)
T d1um5h1          87 SEDSAVYYCARS   98 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=7.6e-05  Score=50.33  Aligned_cols=68  Identities=15%  Similarity=0.198  Sum_probs=42.3

Q ss_pred             eecCCCeEEEEEEEcCCCC--Ce-EEEEEC-CEEcc---------------CCCcee--EEEeCCEEEEEEccCCCCCCe
Q psy12422        200 TIDDGQCLDLSAVVKGDPE--PR-VSWTKN-GQPLN---------------SSNILD--LKYKNGVASLQIQEVFPEDEG  258 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~p~--p~-i~W~~~-g~~~~---------------~~~~~~--~~~~~~~~~L~i~~v~~~d~G  258 (356)
                      .+.+|++++|.|...+.-.  .. +.|++. +..++               ...+..  ........+|+|.+++.+|+|
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   90 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD   90 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence            4667999999999865432  22 345551 11110               011112  223345678999999999999


Q ss_pred             EEEEEEEcC
Q psy12422        259 VYVCTATNS  267 (356)
Q Consensus       259 ~Y~C~a~n~  267 (356)
                      .|.|.+...
T Consensus        91 vYyCa~~~~   99 (118)
T d1yjdc1          91 IYFCKIEVM   99 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEecc
Confidence            999976543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.86  E-value=4.7e-05  Score=49.29  Aligned_cols=68  Identities=21%  Similarity=0.414  Sum_probs=47.7

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------ccC-------------CCceeEEEe--CCEEEEEEcc
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LNS-------------SNILDLKYK--NGVASLQIQE  251 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~~-------------~~~~~~~~~--~~~~~L~i~~  251 (356)
                      ....+++|+++.|+|.+.|+...  .+.|.+  .|..      +..             ..++.+..+  .+...|.|.+
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            34568999999999999987643  488877  2211      111             124455554  3456799999


Q ss_pred             CCCCCCeEEEEEE
Q psy12422        252 VFPEDEGVYVCTA  264 (356)
Q Consensus       252 v~~~d~G~Y~C~a  264 (356)
                      ++.+|++.|.|.-
T Consensus        88 L~~eDTAvYYCAr  100 (109)
T d2ck0h1          88 LKTEDTGIYYCVR  100 (109)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             CCHhHCEEEEEEE
Confidence            9999999999954

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.2e-06  Score=55.79  Aligned_cols=80  Identities=14%  Similarity=0.276  Sum_probs=50.0

Q ss_pred             CCeecc-cCCceeecCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeE--EE----eCC----EEEEEEccCCCC
Q psy12422        189 PPQFAN-KLTDKTIDDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDL--KY----KNG----VASLQIQEVFPE  255 (356)
Q Consensus       189 ~p~~~~-~~~~~~v~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~--~~----~~~----~~~L~i~~v~~~  255 (356)
                      +|.+.+ .+....+..++.++|.|.+.+ +|.. .|.|++||..+........  ..    .++    .+.|.|..-...
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            344432 333344667889999999977 4544 6999999998875432211  11    111    134555544444


Q ss_pred             CCeEEEEEEEcCC
Q psy12422        256 DEGVYVCTATNSL  268 (356)
Q Consensus       256 d~G~Y~C~a~n~~  268 (356)
                      ....|+|+|.+..
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            5679999999865

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.86  E-value=4.5e-05  Score=50.48  Aligned_cols=68  Identities=25%  Similarity=0.417  Sum_probs=48.0

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------cC----------CCceeEEEe--CCEEEEEEccCCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------NS----------SNILDLKYK--NGVASLQIQEVFPE  255 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~~----------~~~~~~~~~--~~~~~L~i~~v~~~  255 (356)
                      ...+++|+++.|.|.+.|+...  .+.|++  .|..+      ..          ..++.+..+  .+...|.|.+++.+
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e   88 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence            3468899999999999987644  488987  22111      11          234555543  33567999999999


Q ss_pred             CCeEEEEEEEc
Q psy12422        256 DEGVYVCTATN  266 (356)
Q Consensus       256 d~G~Y~C~a~n  266 (356)
                      |++.|.| |..
T Consensus        89 DtA~YYC-Ar~   98 (120)
T d1dn0b1          89 DTAVYYC-ARP   98 (120)
T ss_dssp             GCEEEEE-EEC
T ss_pred             cccEEEE-Eee
Confidence            9999999 543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=1e-05  Score=53.67  Aligned_cols=69  Identities=17%  Similarity=0.289  Sum_probs=43.5

Q ss_pred             CCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeEE---EeCC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        203 DGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDLK---YKNG----VASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       203 ~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~~---~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      .+..++|.|.+.|+ |. ..|+|.+||..+.........   ..++    .+.|.|..-..+....|+|++.+.....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~   96 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS   96 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            46679999999774 54 469999999987643211111   1111    1356555544444668999999876543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.85  E-value=3.3e-05  Score=51.65  Aligned_cols=70  Identities=17%  Similarity=0.347  Sum_probs=45.4

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------CCC---------ceeE-EEeCCEEEEEEccCCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------SSN---------ILDL-KYKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------~~~---------~~~~-~~~~~~~~L~i~~v~~~d~  257 (356)
                      |....+.+|++++|.|..... ...+.|++  .|..+.      ...         .... ........|.|.++..+|+
T Consensus         6 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQT   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHC
Confidence            455678999999999988532 45699998  221111      000         0000 1112235799999999999


Q ss_pred             eEEEEEEEc
Q psy12422        258 GVYVCTATN  266 (356)
Q Consensus       258 G~Y~C~a~n  266 (356)
                      |.|.|.+..
T Consensus        85 avYyCA~~~   93 (112)
T d2bnub1          85 SVYFCASSY   93 (112)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEeecC
Confidence            999997653

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.85  E-value=5.6e-05  Score=49.63  Aligned_cols=67  Identities=22%  Similarity=0.408  Sum_probs=47.1

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+...  .+.|.+  .|..      +. .          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            4567889999999999987644  488887  2211      11 1          134455544  3346799999999


Q ss_pred             CCCeEEEEEE
Q psy12422        255 EDEGVYVCTA  264 (356)
Q Consensus       255 ~d~G~Y~C~a  264 (356)
                      +|++.|.|..
T Consensus        89 eDTAvYYCAr   98 (117)
T d1jnhb1          89 EDSAVYSCSR   98 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999954

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.2e-05  Score=53.09  Aligned_cols=65  Identities=14%  Similarity=0.219  Sum_probs=42.7

Q ss_pred             CCceEEEEEecc-CCC-CeeEEeeCCEEcccCCe----eEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGST-KPP-PTVKWYKGNRELSKRDY----SMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~~----~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      +++++|.|.+.| +|. ..|+|++||+.+.....    .....++.+    .|+|..-.-.+...|+|.+.+...
T Consensus        19 ~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          19 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             CCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            357899999976 453 58999999999865421    123344443    455554333445689999988643

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.84  E-value=9.6e-05  Score=48.13  Aligned_cols=65  Identities=18%  Similarity=0.201  Sum_probs=42.5

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccCCe--eEEecCCeEEEEE-eeCCCCCCeEEEEEEEeCCc
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDY--SMSYSDGVVSMEI-IDCKPEDSGEYKCVATNKHG   65 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~--~~~~~~~~~~L~i-~~~~~~D~G~Y~C~a~n~~g   65 (356)
                      |+..+|.|.+.|. |. ..|+|++||..+.....  .....++.+.+.- ..+..+|...|+|.+.+..-
T Consensus        18 ~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          18 GKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEPD   87 (103)
T ss_dssp             TSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETTT
T ss_pred             CCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCCC
Confidence            5677899999884 54 47899999998764332  2234556543321 12345566679999988743

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.84  E-value=5e-05  Score=49.98  Aligned_cols=65  Identities=22%  Similarity=0.403  Sum_probs=44.9

Q ss_pred             eeecCCCeEEEEEEEcCCCC--CeEEEEE--CCEEc------c-C----------CCceeEEEe--CCEEEEEEccCCCC
Q psy12422        199 KTIDDGQCLDLSAVVKGDPE--PRVSWTK--NGQPL------N-S----------SNILDLKYK--NGVASLQIQEVFPE  255 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~--p~i~W~~--~g~~~------~-~----------~~~~~~~~~--~~~~~L~i~~v~~~  255 (356)
                      ..+++|+++.|.|.+.|+-.  -.+.|++  .|..+      . .          ..++.+..+  .+...|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            45889999999999988643  3488877  22211      1 1          123344433  33467999999999


Q ss_pred             CCeEEEEE
Q psy12422        256 DEGVYVCT  263 (356)
Q Consensus       256 d~G~Y~C~  263 (356)
                      |++.|.|-
T Consensus        90 DtAvYYCA   97 (115)
T d1f3dh1          90 DSAVYYCA   97 (115)
T ss_dssp             GCEEEEEE
T ss_pred             CcEEEEEe
Confidence            99999994

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.84  E-value=4.1e-05  Score=50.31  Aligned_cols=66  Identities=21%  Similarity=0.407  Sum_probs=45.9

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+...  .+.|.|  .|..      +. .          ..++.+..+  .+...|.|++++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            3568999999999999987633  488877  2211      11 1          123444443  3456799999999


Q ss_pred             CCCeEEEEE
Q psy12422        255 EDEGVYVCT  263 (356)
Q Consensus       255 ~d~G~Y~C~  263 (356)
                      +|++.|.|-
T Consensus        89 eDtAvYYCA   97 (118)
T d1nlbh1          89 EDTATYFCA   97 (118)
T ss_dssp             GGCEEEEEE
T ss_pred             CcceEEEEe
Confidence            999999994

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.84  E-value=4.4e-05  Score=50.17  Aligned_cols=62  Identities=18%  Similarity=0.186  Sum_probs=42.8

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c-----------cCCeeEE--ecCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S-----------KRDYSMS--YSDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~-----------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      |+++.|+|.+.|...  ..+.|+|.  |+.+      .           .+++.+.  .......|+|.+++.+|++.|.
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDtAvYy   94 (116)
T d7fabh1          15 SQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTAVYY   94 (116)
T ss_dssp             TSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccceEEE
Confidence            789999999987543  35789883  3222      1           1233333  2334578999999999999999


Q ss_pred             EEEEe
Q psy12422         58 CVATN   62 (356)
Q Consensus        58 C~a~n   62 (356)
                      |....
T Consensus        95 CAr~~   99 (116)
T d7fabh1          95 CARNL   99 (116)
T ss_dssp             EEEEC
T ss_pred             eeeec
Confidence            97543

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.84  E-value=7.6e-06  Score=53.79  Aligned_cols=66  Identities=18%  Similarity=0.280  Sum_probs=41.6

Q ss_pred             CCCeEEEEEEEcC-CCC-CeEEEEECCEEccCCCceeEE--EeCC---EEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        203 DGQCLDLSAVVKG-DPE-PRVSWTKNGQPLNSSNILDLK--YKNG---VASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       203 ~g~~~~l~C~~~g-~p~-p~i~W~~~g~~~~~~~~~~~~--~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      .++.++|.|.+.| +|. ..|+|.+||............  .++.   .+.|.|..-..+....|+|++.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4778999999987 453 469999999875532111111  1111   2456555444345668999999865

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=0.00014  Score=43.82  Aligned_cols=74  Identities=24%  Similarity=0.440  Sum_probs=52.9

Q ss_pred             CceeecCCCeEEEEEEEc-CCCCCeEEEEE-CC---EEccCCCceeEEEeC----CEEEEEEccCCCCCCeEEEEEEEcC
Q psy12422        197 TDKTIDDGQCLDLSAVVK-GDPEPRVSWTK-NG---QPLNSSNILDLKYKN----GVASLQIQEVFPEDEGVYVCTATNS  267 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~-~g---~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~  267 (356)
                      +..++..|+.+.|.|.+. ---.|.++|-| +|   .++......+.....    ....|.+..+-.+|.|.|+|.|.-.
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence            345788999999999995 34578999998 54   333333333333322    2468999999999999999999765


Q ss_pred             CCc
Q psy12422        268 LGT  270 (356)
Q Consensus       268 ~g~  270 (356)
                      .+.
T Consensus        91 s~v   93 (104)
T d1xaua_          91 SQV   93 (104)
T ss_dssp             TEE
T ss_pred             hhh
Confidence            553

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.83  E-value=2.1e-05  Score=52.63  Aligned_cols=70  Identities=24%  Similarity=0.311  Sum_probs=45.7

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------------C----CCceeEEE-eCCEEEEEEccCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------------S----SNILDLKY-KNGVASLQIQEVFPED  256 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------------~----~~~~~~~~-~~~~~~L~i~~v~~~d  256 (356)
                      |....+.+|++++|.|.... ....+.|++  .|....            .    ..+..... ......|+|.+++.+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence            44567899999999998643 345689988  121110            0    11111111 1234689999999999


Q ss_pred             CeEEEEEEEc
Q psy12422        257 EGVYVCTATN  266 (356)
Q Consensus       257 ~G~Y~C~a~n  266 (356)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (112)
T d1kgce1          85 SAVYLCASSL   94 (112)
T ss_dssp             CEEEEEEEES
T ss_pred             CEEEEEeeeC
Confidence            9999997754

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.83  E-value=5.9e-05  Score=49.33  Aligned_cols=68  Identities=24%  Similarity=0.435  Sum_probs=47.6

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|+|.+.|+...  .+.|.|  .|..      +. .          ..++.+..+  .+...|.|.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~   87 (116)
T d1mjuh1           8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (116)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC
Confidence            45678999999999999987644  377876  2211      11 1          124445444  345689999999


Q ss_pred             CCCCeEEEEEE
Q psy12422        254 PEDEGVYVCTA  264 (356)
Q Consensus       254 ~~d~G~Y~C~a  264 (356)
                      .+|.+.|.|-.
T Consensus        88 ~eDtAvYYCAr   98 (116)
T d1mjuh1          88 SDDSAVYYCAN   98 (116)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCCceEEEEcc
Confidence            99999999953

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.83  E-value=4.1e-05  Score=50.25  Aligned_cols=70  Identities=21%  Similarity=0.396  Sum_probs=47.9

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+...  .+.|.|  .|..      +. .          ..++.+..+  .+...|.+.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~   87 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence            34568899999999999987633  488876  2211      11 1          123444443  345679999999


Q ss_pred             CCCCeEEEEEEEc
Q psy12422        254 PEDEGVYVCTATN  266 (356)
Q Consensus       254 ~~d~G~Y~C~a~n  266 (356)
                      .+|++.|.|....
T Consensus        88 ~eDTAvYYCAr~~  100 (117)
T d1jpth1          88 AEDTAVYYCARDT  100 (117)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCceEEEEeecC
Confidence            9999999995443

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.82  E-value=3.1e-05  Score=50.94  Aligned_cols=63  Identities=19%  Similarity=0.293  Sum_probs=43.1

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|.|+|.+.|...  ..+.|+|.  |+.+      .            ..++.+.  .......|+|.+++.+|++.|
T Consensus        15 g~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eDtAvY   94 (117)
T d1iqdb1          15 GASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDDTAVY   94 (117)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCcceEE
Confidence            799999999987533  35789883  2211      1            1233333  234456899999999999999


Q ss_pred             EEEEEeC
Q psy12422         57 KCVATNK   63 (356)
Q Consensus        57 ~C~a~n~   63 (356)
                      .|.....
T Consensus        95 YCA~~~~  101 (117)
T d1iqdb1          95 YCAVPDP  101 (117)
T ss_dssp             EEEECSS
T ss_pred             EEeEcCC
Confidence            9976543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.81  E-value=6.7e-05  Score=49.38  Aligned_cols=68  Identities=24%  Similarity=0.337  Sum_probs=46.3

Q ss_pred             CceeecCCCeEEEEEEEcCCCC--CeEEEEE--CCEEc------cC-----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPE--PRVSWTK--NGQPL------NS-----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~--~g~~~------~~-----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+-.  -.+.|.+  .|..+      ..           ..++.+..+  .+...|.|.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~   87 (117)
T d1mfah1           8 GTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLT   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccC
Confidence            3456889999999999998653  3477876  22211      10           123444443  345679999999


Q ss_pred             CCCCeEEEEEE
Q psy12422        254 PEDEGVYVCTA  264 (356)
Q Consensus       254 ~~d~G~Y~C~a  264 (356)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (117)
T d1mfah1          88 SEDSAVYYCTR   98 (117)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEec
Confidence            99999999953

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.80  E-value=0.00012  Score=48.94  Aligned_cols=70  Identities=16%  Similarity=0.335  Sum_probs=48.3

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------c-C----------CCceeEEEeC--CEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------N-S----------SNILDLKYKN--GVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~-~----------~~~~~~~~~~--~~~~L~i~~v~  253 (356)
                      ....+++|+++.|+|.+.|+...  .+.|.|  .|..+      . .          ..++.+..+.  +...|.|.+++
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~   86 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLR   86 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccC
Confidence            34568899999999999987533  488877  22111      1 1          1244455443  34679999999


Q ss_pred             CCCCeEEEEEEEc
Q psy12422        254 PEDEGVYVCTATN  266 (356)
Q Consensus       254 ~~d~G~Y~C~a~n  266 (356)
                      .+|+++|.|....
T Consensus        87 ~eDtAvYyCAr~~   99 (130)
T d1rhhb1          87 SDDTAVYYCARDF   99 (130)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCcEEEEEEeec
Confidence            9999999996543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.80  E-value=8.5e-05  Score=49.29  Aligned_cols=69  Identities=19%  Similarity=0.409  Sum_probs=47.5

Q ss_pred             ceeecCCCeEEEEEEEcCCCC--CeEEEEE--CCEEc------c-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPE--PRVSWTK--NGQPL------N-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~--p~i~W~~--~g~~~------~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|++++|.|.+.|+..  -.+.|++  .|..+      . .          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            346889999999999988653  3488887  22211      1 1          124444443  3456799999999


Q ss_pred             CCCeEEEEEEEc
Q psy12422        255 EDEGVYVCTATN  266 (356)
Q Consensus       255 ~d~G~Y~C~a~n  266 (356)
                      +|++.|.|....
T Consensus        89 eDtA~YYCAr~~  100 (120)
T d1pg7x1          89 NDSAVYYCARED  100 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CcceEEEeeecC
Confidence            999999996543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=3e-05  Score=50.80  Aligned_cols=64  Identities=16%  Similarity=0.155  Sum_probs=41.0

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccCCe---eEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDY---SMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~---~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      ++++.|.|.+.|. |. ..|+|++||+.+.....   .....++.+    .|+|....-.....|+|.+.+..
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4578999999774 43 37899999999875421   123445543    34443322222457999998864

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=5.3e-05  Score=49.70  Aligned_cols=61  Identities=23%  Similarity=0.304  Sum_probs=42.4

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEcc-----------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NRELS-----------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l~-----------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      |++++|+|.+.|...  ..+.|+|.  |+.+.                 .+++.+..  ....+.|+|.+++.+|++.|.
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDtAvYY   94 (117)
T d1c5db1          15 SQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYF   94 (117)
T ss_dssp             TSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcceEEE
Confidence            789999999987644  35789883  33221                 12333332  334568999999999999999


Q ss_pred             EEEE
Q psy12422         58 CVAT   61 (356)
Q Consensus        58 C~a~   61 (356)
                      |...
T Consensus        95 CAr~   98 (117)
T d1c5db1          95 CTRE   98 (117)
T ss_dssp             EEEC
T ss_pred             Eecc
Confidence            9643

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.79  E-value=2.3e-05  Score=52.45  Aligned_cols=73  Identities=14%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEEC--CEEcc---------------CCCceeEE-EeCCEEEEEEccCCCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTKN--GQPLN---------------SSNILDLK-YKNGVASLQIQEVFPED  256 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~--g~~~~---------------~~~~~~~~-~~~~~~~L~i~~v~~~d  256 (356)
                      .|....+.+|++++|.|..... ...+.|++-  |..+.               ...++... .......|+|.+++.+|
T Consensus         7 ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1           7 SPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             ECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             cCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            3455678999999999987432 356999982  21110               01111111 12234689999999999


Q ss_pred             CeEEEEEEEcCC
Q psy12422        257 EGVYVCTATNSL  268 (356)
Q Consensus       257 ~G~Y~C~a~n~~  268 (356)
                      +|.|.|.+....
T Consensus        86 sa~YyCa~~~~~   97 (113)
T d1nfdb1          86 SAMYFCASSLRW   97 (113)
T ss_dssp             CEEECEEEESSS
T ss_pred             ceeEEEEeecCC
Confidence            999999776443

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.79  E-value=4.9e-05  Score=50.01  Aligned_cols=67  Identities=15%  Similarity=0.358  Sum_probs=46.6

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+...  .+.|.|  .|..      +. .          ..++.+..+  .+...|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~   87 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence            34568899999999999987743  488877  2211      11 1          123344433  345679999999


Q ss_pred             CCCCeEEEEE
Q psy12422        254 PEDEGVYVCT  263 (356)
Q Consensus       254 ~~d~G~Y~C~  263 (356)
                      .+|++.|.|-
T Consensus        88 ~eDTAvYYCA   97 (118)
T d2jelh1          88 SEDSAIYYCA   97 (118)
T ss_dssp             GGGCEEEEEE
T ss_pred             cCcceeeeEE
Confidence            9999999993

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.79  E-value=4.7e-05  Score=50.51  Aligned_cols=61  Identities=20%  Similarity=0.235  Sum_probs=41.8

Q ss_pred             CCceEEEEEeccCCC----CeeEEeeC--CEEc------c-----------cCCeeEEe--cCCeEEEEEeeCCCCCCeE
Q psy12422          1 MQNVIKVKVGSTKPP----PTVKWYKG--NREL------S-----------KRDYSMSY--SDGVVSMEIIDCKPEDSGE   55 (356)
Q Consensus         1 g~~v~l~C~~~g~p~----~~v~W~k~--g~~l------~-----------~~~~~~~~--~~~~~~L~i~~~~~~D~G~   55 (356)
                      |+++.|+|.+.|...    ..+.|+|.  |+.+      .           .+++.+..  ....+.|+|.+++.+|++.
T Consensus        15 g~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~eDtAv   94 (120)
T d1ai1h1          15 SQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAM   94 (120)
T ss_dssp             SSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             CCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeeccceeE
Confidence            789999999987532    24689983  2222      1           12333332  3345689999999999999


Q ss_pred             EEEEEE
Q psy12422         56 YKCVAT   61 (356)
Q Consensus        56 Y~C~a~   61 (356)
                      |.|...
T Consensus        95 YYCAr~  100 (120)
T d1ai1h1          95 YYCSRE  100 (120)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            999653

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=2.7e-05  Score=49.64  Aligned_cols=60  Identities=17%  Similarity=0.320  Sum_probs=41.0

Q ss_pred             CceEEEEEeccC-CC-CeeEEeeCCEEcccCCeeE-EecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          2 QNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDYSM-SYSDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         2 ~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~~~-~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      .+++|.|.+.|. |. ..|+|++||..+....... ...++.+    .|.|   ..+|...|+|++....
T Consensus        16 ~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v---~~~~~~~ytC~V~H~s   82 (91)
T d3frua1          16 GSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEV---KRGDEHHYQCQVEHEG   82 (91)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTT
T ss_pred             CCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEE---CCCCCCEEEEEEEeCC
Confidence            468999999884 55 4799999999986543222 2344443    3444   3456678999998753

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9.1e-06  Score=53.42  Aligned_cols=67  Identities=24%  Similarity=0.385  Sum_probs=42.5

Q ss_pred             CCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeE-EEeCC----EEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        203 DGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDL-KYKNG----VASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       203 ~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      .++.++|.|.+.|+ |. ..|+|++||........... ...++    .+.|.|..-.......|+|++.+..-
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            46789999999884 53 46999999987654211111 11122    24566655444455689999998654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.78  E-value=3.4e-05  Score=50.83  Aligned_cols=60  Identities=20%  Similarity=0.216  Sum_probs=40.7

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEc------c-c-----------CCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NREL------S-K-----------RDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~-~-----------~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++++|.|.+.|.-  ...+.|+|.  |+.+      . .           +++.+.  .......|+|.+++.+|++.|
T Consensus        15 G~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eDtAvY   94 (115)
T d1f3dh1          15 GASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFEDSAVY   94 (115)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCCcEEE
Confidence            79999999997753  345889983  2221      1 1           122232  223446799999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCAr   98 (115)
T d1f3dh1          95 YCAN   98 (115)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9953

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=9.4e-06  Score=53.16  Aligned_cols=66  Identities=21%  Similarity=0.372  Sum_probs=42.0

Q ss_pred             CCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCcee-EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        203 DGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILD-LKYKNG----VASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       203 ~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      ..+.++|.|.+.|+ |. ..|.|.+||..+....... ....++    .+.|.|..-.......|+|++.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35678999999884 63 4699999998875422111 111122    2456665444445678999999874

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=0.00016  Score=46.59  Aligned_cols=67  Identities=25%  Similarity=0.429  Sum_probs=40.7

Q ss_pred             CCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------c-C----------CCceeEEEe--CCEEEEEEccCCCCCCeE
Q psy12422        203 DGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------N-S----------SNILDLKYK--NGVASLQIQEVFPEDEGV  259 (356)
Q Consensus       203 ~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~-~----------~~~~~~~~~--~~~~~L~i~~v~~~d~G~  259 (356)
                      +|+++.|.|.+.|+...  .+.|.|  .|..+      . .          ..++.+..+  .+...|.|.+++.+|+++
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            58999999999987643  488986  22222      1 1          123433332  334679999999999999


Q ss_pred             EEEEEEcCCC
Q psy12422        260 YVCTATNSLG  269 (356)
Q Consensus       260 Y~C~a~n~~g  269 (356)
                      |.|......+
T Consensus        81 YYCAr~~~~~   90 (103)
T d1oari_          81 YYCARMWYYG   90 (103)
T ss_dssp             EEEEEEECSS
T ss_pred             EEeEEECCCC
Confidence            9997655444

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.77  E-value=3.9e-05  Score=50.12  Aligned_cols=60  Identities=13%  Similarity=0.248  Sum_probs=41.2

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEE------cc-c-----------CCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NRE------LS-K-----------RDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~------l~-~-----------~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|...  ..+.|+|.  |+.      +. .           .++.+.  .......|+|.+++.+|++.|
T Consensus        15 G~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eDtAvY   94 (114)
T d1indh1          15 GGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDTALY   94 (114)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCcccEE
Confidence            789999999987643  35789883  221      11 1           233333  233456899999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCA~   98 (114)
T d1indh1          95 FCAS   98 (114)
T ss_dssp             EEEC
T ss_pred             EECC
Confidence            9963

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.77  E-value=2.2e-05  Score=53.04  Aligned_cols=70  Identities=17%  Similarity=0.275  Sum_probs=46.6

Q ss_pred             CceeecCCCeEEEEEEEcCCC--CCeEEEEE--CCEEcc------C----------CCceeEEE--eCCEEEEEEccCCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDP--EPRVSWTK--NGQPLN------S----------SNILDLKY--KNGVASLQIQEVFP  254 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p--~p~i~W~~--~g~~~~------~----------~~~~~~~~--~~~~~~L~i~~v~~  254 (356)
                      ..++..+|++++|.|.+.+..  ...+.|++  .|..+.      .          ..+..+..  ......|.|.+++.
T Consensus         9 ~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~   88 (120)
T d1ypzf1           9 ISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEE   88 (120)
T ss_dssp             SEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCG
T ss_pred             CEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccc
Confidence            456778899999999986543  34589998  221110      0          11222222  23457899999999


Q ss_pred             CCCeEEEEEEEc
Q psy12422        255 EDEGVYVCTATN  266 (356)
Q Consensus       255 ~d~G~Y~C~a~n  266 (356)
                      +|+|.|.|.+..
T Consensus        89 ~Dsa~YyCA~~~  100 (120)
T d1ypzf1          89 EDEAIYYCSYGE  100 (120)
T ss_dssp             GGCSEEEEEECC
T ss_pred             ccceeEEEEEcC
Confidence            999999996643

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4e-05  Score=50.39  Aligned_cols=78  Identities=15%  Similarity=0.205  Sum_probs=46.0

Q ss_pred             eecCCCeEEEEEEEcC-CCC-CeEEEEECCEEccCCCce-eEEEeCCE----EEEEEccCCCC--CCeEEEEEEEcCCCc
Q psy12422        200 TIDDGQCLDLSAVVKG-DPE-PRVSWTKNGQPLNSSNIL-DLKYKNGV----ASLQIQEVFPE--DEGVYVCTATNSLGT  270 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g-~p~-p~i~W~~~g~~~~~~~~~-~~~~~~~~----~~L~i~~v~~~--d~G~Y~C~a~n~~g~  270 (356)
                      .......++|.|.+.| +|. ..|+|.++|..+...... .....++.    +.|+|..-...  ....|+|++.+..+.
T Consensus        17 ~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          17 SPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             ----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             ccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            3445678999999987 453 469999988766532111 01112332    34555544432  224799999999887


Q ss_pred             eEEEEEE
Q psy12422        271 AETKCKL  277 (356)
Q Consensus       271 ~~~~~~l  277 (356)
                      ....+.+
T Consensus        97 ~~~~v~~  103 (105)
T d1dn0b2          97 KEKNVPL  103 (105)
T ss_dssp             EEEEEEC
T ss_pred             EEeEEec
Confidence            7666543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=3.7e-05  Score=48.80  Aligned_cols=60  Identities=18%  Similarity=0.172  Sum_probs=39.4

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeCCEEcccCCe---eEEecCCeE----EEEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKGNRELSKRDY---SMSYSDGVV----SMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~g~~l~~~~~---~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      ++++.|.|.+.|+-+  ..|+|++||+.+.....   .....++.+    .|.|.   ..|...|+|.+.+.
T Consensus        15 ~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~   83 (89)
T d2mhaa1          15 EDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQ   83 (89)
T ss_dssp             SSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEEC
Confidence            357899999988633  36799999998865422   123344433    44444   34445799999775

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.76  E-value=8.3e-05  Score=49.50  Aligned_cols=67  Identities=22%  Similarity=0.406  Sum_probs=45.1

Q ss_pred             eeecCCCeEEEEEEEcCCC----CCeEEEEE--CCEEcc----------------CCCceeEEEe--CCEEEEEEccCCC
Q psy12422        199 KTIDDGQCLDLSAVVKGDP----EPRVSWTK--NGQPLN----------------SSNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p----~p~i~W~~--~g~~~~----------------~~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ..+++|++++|.|.+.|+.    ...+.|+|  .|..+.                ...++.+..+  .....|.|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            4578899999999998754    23588997  222110                0123333332  2357899999999


Q ss_pred             CCCeEEEEEEE
Q psy12422        255 EDEGVYVCTAT  265 (356)
Q Consensus       255 ~d~G~Y~C~a~  265 (356)
                      +|++.|.|-..
T Consensus        90 eDsAvYyCAr~  100 (120)
T d2agjh1          90 VDTATYYCART  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeEec
Confidence            99999999544

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.76  E-value=5.2e-05  Score=48.98  Aligned_cols=64  Identities=14%  Similarity=0.310  Sum_probs=40.6

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccCCe---eEEecCCeEEE-EEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDY---SMSYSDGVVSM-EIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~---~~~~~~~~~~L-~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |+..+|.|.+.|. |. ..|+|++||+++.....   .....++.+++ ....+...+...|+|.+.+..
T Consensus        16 ~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          16 NHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCC
Confidence            4667899999775 43 57999999988764311   12344554432 233455667789999998863

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.76  E-value=5.2e-05  Score=49.94  Aligned_cols=64  Identities=14%  Similarity=0.224  Sum_probs=43.0

Q ss_pred             CCceEEEEEeccCCCC--eeEEeeC--CEEc------c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPPP--TVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~--~v~W~k~--g~~l------~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||++.|.|.+.|....  .+.|+|.  |+.+      .            .+++.+..  ......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDtAvY   94 (118)
T d2fbjh1          15 GGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALY   94 (118)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCcceEE
Confidence            7899999999886433  4688873  3211      1            11233332  23446799999999999999


Q ss_pred             EEEEEeCC
Q psy12422         57 KCVATNKH   64 (356)
Q Consensus        57 ~C~a~n~~   64 (356)
                      .|......
T Consensus        95 YCAr~~~~  102 (118)
T d2fbjh1          95 YCARLHYY  102 (118)
T ss_dssp             EEEEEETT
T ss_pred             EeeEecCC
Confidence            99765543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=9.5e-06  Score=55.01  Aligned_cols=73  Identities=19%  Similarity=0.210  Sum_probs=45.9

Q ss_pred             CCceeecCCCeEEEEEEEcC---CC---CCeEEEEECCE----Ecc-----------CCCceeEEE--eCCEEEEEEccC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKG---DP---EPRVSWTKNGQ----PLN-----------SSNILDLKY--KNGVASLQIQEV  252 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g---~p---~p~i~W~~~g~----~~~-----------~~~~~~~~~--~~~~~~L~i~~v  252 (356)
                      |..+.+.+|++|.|.|....   .+   ...+.|++...    .+.           ...+..+..  ..+..+|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            34578999999999999852   12   12356776321    110           011222211  234567999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy12422        253 FPEDEGVYVCTATNSL  268 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n~~  268 (356)
                      +.+|+|.|.|.+....
T Consensus        87 ~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          87 KPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CGGGCEEEEEEEECC-
T ss_pred             ChhHCEEEEEEEEeCC
Confidence            9999999999996553

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.75  E-value=3.7e-05  Score=49.44  Aligned_cols=67  Identities=13%  Similarity=0.203  Sum_probs=40.8

Q ss_pred             CCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCcee--EEEe--CCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        203 DGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILD--LKYK--NGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       203 ~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~--~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      .++.++|.|.+.|+ |. ..|+|++||..+.......  ....  +.......-.+..++...|+|++.+...
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGN   86 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETTE
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECCC
Confidence            35678999999885 53 3599999999887543221  1111  1222222223444555679999987644

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.75  E-value=0.00011  Score=49.01  Aligned_cols=68  Identities=25%  Similarity=0.522  Sum_probs=47.6

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+...  .+.|.|  .|..      +. .          ..++.+..+  .....|.|.+++.
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~   87 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS   87 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence            3468899999999999987643  488887  2211      11 1          123444444  3456799999999


Q ss_pred             CCCeEEEEEEE
Q psy12422        255 EDEGVYVCTAT  265 (356)
Q Consensus       255 ~d~G~Y~C~a~  265 (356)
                      +|++.|.|...
T Consensus        88 eDtAvYYCAr~   98 (124)
T d1zvya1          88 EDTAIYTCGAT   98 (124)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEeec
Confidence            99999999654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.75  E-value=0.00013  Score=48.05  Aligned_cols=71  Identities=21%  Similarity=0.378  Sum_probs=48.5

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+.-.  .+.|.|  .|..      +. .          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            3568899999999999987643  377876  2211      11 1          123444443  3346799999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy12422        255 EDEGVYVCTATNSL  268 (356)
Q Consensus       255 ~d~G~Y~C~a~n~~  268 (356)
                      +|++.|.|......
T Consensus        89 eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          89 EDTALYYCARLHYY  102 (118)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             CcceEEEeeEecCC
Confidence            99999999765543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.2e-05  Score=51.99  Aligned_cols=69  Identities=14%  Similarity=0.277  Sum_probs=44.4

Q ss_pred             CCCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCceeEE-E--eCC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        203 DGQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILDLK-Y--KNG----VASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       203 ~g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~~~-~--~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      .++.++|.|.+.|+ |. ..|+|.+||..+......... .  .++    .+.|.|..-..+....|+|++.+.....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~~   96 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS   96 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            36789999999774 54 469999999887654322111 1  111    2456665554445568999999976543

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.74  E-value=2.2e-05  Score=52.51  Aligned_cols=73  Identities=16%  Similarity=0.345  Sum_probs=47.0

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc------CCC---------ceeEE-EeCCEEEEEEccCCCCCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN------SSN---------ILDLK-YKNGVASLQIQEVFPEDE  257 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~------~~~---------~~~~~-~~~~~~~L~i~~v~~~d~  257 (356)
                      |....+.+|++++|.|..... ...+.|++  .|..+.      ...         ..... .......|.|.+++.+|+
T Consensus         5 P~~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   83 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHT   83 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTC
T ss_pred             CCEEEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccc
Confidence            445678999999999997532 35689998  221110      000         00000 112235799999999999


Q ss_pred             eEEEEEEEcCCC
Q psy12422        258 GVYVCTATNSLG  269 (356)
Q Consensus       258 G~Y~C~a~n~~g  269 (356)
                      |.|.|-+....+
T Consensus        84 a~YyCA~~~~~~   95 (112)
T d2cdeb1          84 SQYLCASSENIG   95 (112)
T ss_dssp             SEEEEEEECSSS
T ss_pred             ccEEEEEecCCC
Confidence            999998775543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.74  E-value=0.00011  Score=48.50  Aligned_cols=69  Identities=17%  Similarity=0.373  Sum_probs=47.6

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+...  .+.|.+  .|..      +. .          ..++.+..+  .+...|.|.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~   87 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLR   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccC
Confidence            34568899999999999987644  488876  2211      11 1          124444443  345679999999


Q ss_pred             CCCCeEEEEEEE
Q psy12422        254 PEDEGVYVCTAT  265 (356)
Q Consensus       254 ~~d~G~Y~C~a~  265 (356)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1rz7h1          88 SEDTAVYYCAAD   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccceEEEEeec
Confidence            999999999543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.74  E-value=9.2e-05  Score=48.34  Aligned_cols=66  Identities=20%  Similarity=0.380  Sum_probs=46.1

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+...  .+.|.+  .|..      +. .          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            3468899999999999987633  478877  2211      11 1          124445444  3446799999999


Q ss_pred             CCCeEEEEE
Q psy12422        255 EDEGVYVCT  263 (356)
Q Consensus       255 ~d~G~Y~C~  263 (356)
                      +|++.|.|-
T Consensus        89 eDtAvYYCA   97 (114)
T d1indh1          89 EDTALYFCA   97 (114)
T ss_dssp             GGCEEEEEE
T ss_pred             CcccEEEEC
Confidence            999999994

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.74  E-value=8.7e-05  Score=49.64  Aligned_cols=69  Identities=20%  Similarity=0.353  Sum_probs=47.4

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------c-C----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------N-S----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~-~----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+...  .+.|.+  .|..+      . .          ..++.+..+  .+...|.|.+++
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~   87 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLT   87 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccC
Confidence            34568899999999999986633  377776  22111      1 1          124444444  345679999999


Q ss_pred             CCCCeEEEEEEE
Q psy12422        254 PEDEGVYVCTAT  265 (356)
Q Consensus       254 ~~d~G~Y~C~a~  265 (356)
                      .+|++.|.|-..
T Consensus        88 ~eDtAvYYCAR~   99 (125)
T d1rihh1          88 SEDSAVYYCARE   99 (125)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEEeee
Confidence            999999999654

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.74  E-value=4.5e-05  Score=49.90  Aligned_cols=60  Identities=20%  Similarity=0.248  Sum_probs=41.3

Q ss_pred             CCceEEEEEeccCCCC--eeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPPP--TVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~--~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|....  .+.|+|.  |+.+      .            .+++.+.  .......|.|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~eDtAvY   94 (116)
T d1mjuh1          15 GASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVY   94 (116)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCCCceEE
Confidence            7899999999876443  4689882  2211      1            1233333  233456899999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCAr   98 (116)
T d1mjuh1          95 YCAN   98 (116)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            9964

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.74  E-value=8.3e-05  Score=49.54  Aligned_cols=67  Identities=18%  Similarity=0.384  Sum_probs=47.2

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+...  .+.|.+  .|..      +. .          ..++.+..+  .+...|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~   87 (127)
T d1n0xh1           8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR   87 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccC
Confidence            44578999999999999987643  378887  2211      11 1          123445444  345679999999


Q ss_pred             CCCCeEEEEE
Q psy12422        254 PEDEGVYVCT  263 (356)
Q Consensus       254 ~~d~G~Y~C~  263 (356)
                      .+|++.|.|.
T Consensus        88 ~eDtAvYYCA   97 (127)
T d1n0xh1          88 SADTAVYYCA   97 (127)
T ss_dssp             GGGCEEEEEE
T ss_pred             CCCceEEEEE
Confidence            9999999994

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.73  E-value=6.6e-05  Score=49.27  Aligned_cols=68  Identities=19%  Similarity=0.381  Sum_probs=47.0

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------cC----------CCceeEEEe--CCEEEEEEccCCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------NS----------SNILDLKYK--NGVASLQIQEVFPE  255 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~~----------~~~~~~~~~--~~~~~L~i~~v~~~  255 (356)
                      ...+++|+++.|.|.+.|+...  .+.|.+  .|..+      ..          ..++.+..+  .+...|.|++++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            3468899999999999987643  478877  22211      11          123444433  34567999999999


Q ss_pred             CCeEEEEEEE
Q psy12422        256 DEGVYVCTAT  265 (356)
Q Consensus       256 d~G~Y~C~a~  265 (356)
                      |++.|.|-..
T Consensus        89 DTAvYYCAr~   98 (116)
T d1a2yb_          89 DTARYYCARE   98 (116)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEe
Confidence            9999999644

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.73  E-value=1.5e-05  Score=51.42  Aligned_cols=64  Identities=22%  Similarity=0.300  Sum_probs=41.3

Q ss_pred             CCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCceeEEE--eCCE---EEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        203 DGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILDLKY--KNGV---ASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       203 ~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~~~~--~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      .++.++|.|.+.| +|.. .|+|++|+..+..........  ++..   +.|.|.   .+|...|+|++.+..-
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSSL   85 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCCC
Confidence            4568999999977 5644 699999998876432211111  1221   345554   4556689999988653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.73  E-value=3.2e-05  Score=50.85  Aligned_cols=59  Identities=20%  Similarity=0.283  Sum_probs=40.5

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEE------cc------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NRE------LS------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~------l~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||++.|+|.+.|...  ..+.|+|.  |+.      +.            .+++.+.  .......|+|.+++.+|++.|
T Consensus        15 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eDtAvY   94 (118)
T d1nlbh1          15 GETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNEDTATY   94 (118)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCcceEE
Confidence            789999999987543  35789883  221      11            1223332  233556899999999999999


Q ss_pred             EEE
Q psy12422         57 KCV   59 (356)
Q Consensus        57 ~C~   59 (356)
                      .|.
T Consensus        95 YCA   97 (118)
T d1nlbh1          95 FCA   97 (118)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            994

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.73  E-value=0.00015  Score=48.46  Aligned_cols=69  Identities=19%  Similarity=0.390  Sum_probs=48.1

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------c-----------CCCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------N-----------SSNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~-----------~~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|+|.+.|+...  .+.|.+  .|..+      .           ...++.+..+  .+...|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS   88 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence            4568899999999999987644  377765  11111      0           1234555555  3456799999999


Q ss_pred             CCCeEEEEEEEc
Q psy12422        255 EDEGVYVCTATN  266 (356)
Q Consensus       255 ~d~G~Y~C~a~n  266 (356)
                      +|++.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (128)
T d2nxyd1          89 DDTAVYFCAGVY  100 (128)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cCceEEEEeEEe
Confidence            999999996543

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.72  E-value=6e-05  Score=49.76  Aligned_cols=83  Identities=7%  Similarity=0.054  Sum_probs=47.9

Q ss_pred             CCeeccc-CCceeecCCCeEEEEEEEcC-CCCC-eEEEEECCEEccCCCcee--EEEeCCEEEEEEccCCCCC-CeEEEE
Q psy12422        189 PPQFANK-LTDKTIDDGQCLDLSAVVKG-DPEP-RVSWTKNGQPLNSSNILD--LKYKNGVASLQIQEVFPED-EGVYVC  262 (356)
Q Consensus       189 ~p~~~~~-~~~~~v~~g~~~~l~C~~~g-~p~p-~i~W~~~g~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d-~G~Y~C  262 (356)
                      +|.+.+. +....+..+..++|.|.+.| +|.. .|+|++||..+.......  ...++.........+..++ ...|+|
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC   87 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRC   87 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEE
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEE
Confidence            4444332 34445667888999999977 4533 599999998776432211  1112222222222334444 337999


Q ss_pred             EEEcCCCce
Q psy12422        263 TATNSLGTA  271 (356)
Q Consensus       263 ~a~n~~g~~  271 (356)
                      .+.+.....
T Consensus        88 ~V~H~s~~~   96 (107)
T d1hxmb2          88 IVRHENNKN   96 (107)
T ss_dssp             EEEETTSGG
T ss_pred             EEEECCCCC
Confidence            999876543

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.72  E-value=0.00011  Score=48.85  Aligned_cols=68  Identities=21%  Similarity=0.402  Sum_probs=47.6

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+...  .+.|.+  .|..      +. .          ..++.+..+  .+...|.|.+++
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~   86 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLT   86 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccC
Confidence            34578899999999999987643  378876  2211      11 1          234445444  345789999999


Q ss_pred             CCCCeEEEEEE
Q psy12422        254 PEDEGVYVCTA  264 (356)
Q Consensus       254 ~~d~G~Y~C~a  264 (356)
                      .+|.+.|.|..
T Consensus        87 ~eDTAvYYCAr   97 (126)
T d1lmka1          87 SEDSAVYYCAR   97 (126)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEee
Confidence            99999999953

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.71  E-value=8.4e-05  Score=49.00  Aligned_cols=67  Identities=21%  Similarity=0.395  Sum_probs=46.2

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------ccC-----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LNS-----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~~-----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|+|.+.|+...  .+.|.+  .|..      +..           ..++.+..+  .+...|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            34568899999999999987643  488887  2211      111           123334333  334679999999


Q ss_pred             CCCCeEEEEE
Q psy12422        254 PEDEGVYVCT  263 (356)
Q Consensus       254 ~~d~G~Y~C~  263 (356)
                      .+|.+.|.|.
T Consensus        88 ~eDTAvYYCA   97 (119)
T d1eapb1          88 SEDSAVYFCK   97 (119)
T ss_dssp             GGGCEEEEEE
T ss_pred             CCcceEEEEE
Confidence            9999999994

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.71  E-value=0.00011  Score=49.75  Aligned_cols=62  Identities=18%  Similarity=0.262  Sum_probs=42.0

Q ss_pred             CCceEEEEEeccCCC----CeeEEeeC--CEEcc-----------------cCCeeEEe--cCCeEEEEEeeCCCCCCeE
Q psy12422          1 MQNVIKVKVGSTKPP----PTVKWYKG--NRELS-----------------KRDYSMSY--SDGVVSMEIIDCKPEDSGE   55 (356)
Q Consensus         1 g~~v~l~C~~~g~p~----~~v~W~k~--g~~l~-----------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~   55 (356)
                      |++++|.|.+.|...    .-+.|+|.  |+.+.                 .+++.+..  ....+.|+|.+++.+|++.
T Consensus        15 g~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~eDtAv   94 (132)
T d1tjgh1          15 TQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVDTAT   94 (132)
T ss_dssp             TCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcccceE
Confidence            789999999876432    34789983  22210                 12333322  2345689999999999999


Q ss_pred             EEEEEEe
Q psy12422         56 YKCVATN   62 (356)
Q Consensus        56 Y~C~a~n   62 (356)
                      |.|....
T Consensus        95 YYCAr~~  101 (132)
T d1tjgh1          95 YFCAHRR  101 (132)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            9997644

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.70  E-value=8.1e-05  Score=49.09  Aligned_cols=61  Identities=16%  Similarity=0.261  Sum_probs=42.3

Q ss_pred             CCceEEEEEeccCCCC---eeEEeeC--CEEcc-----------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPPP---TVKWYKG--NRELS-----------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~---~v~W~k~--g~~l~-----------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||++.|+|.+.|..-.   .+.|+|.  |+.+.                 .+++.+.  .......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eDTAvY   94 (119)
T d1ncwh1          15 SQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTEDTATY   94 (119)
T ss_dssp             TSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCCceEE
Confidence            7899999999887543   3689882  33221                 1233332  234456899999999999999


Q ss_pred             EEEEE
Q psy12422         57 KCVAT   61 (356)
Q Consensus        57 ~C~a~   61 (356)
                      .|...
T Consensus        95 YCAr~   99 (119)
T d1ncwh1          95 YCAGL   99 (119)
T ss_dssp             EEEEE
T ss_pred             EEeEe
Confidence            99643

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.70  E-value=5.7e-05  Score=48.90  Aligned_cols=60  Identities=20%  Similarity=0.381  Sum_probs=41.1

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c--------------cCCeeEEe--cCCeEEEEEeeCCCCCCe
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S--------------KRDYSMSY--SDGVVSMEIIDCKPEDSG   54 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~--------------~~~~~~~~--~~~~~~L~i~~~~~~D~G   54 (356)
                      |+++.|+|.+.|...  .-+.|+|.  |+.+      .              .+++.+..  ......|+|.+++.+|++
T Consensus        15 G~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~eDTA   94 (109)
T d2ck0h1          15 RGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKTEDTG   94 (109)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCHhHCE
Confidence            799999999987533  35789882  2211      1              01333332  244568999999999999


Q ss_pred             EEEEEE
Q psy12422         55 EYKCVA   60 (356)
Q Consensus        55 ~Y~C~a   60 (356)
                      .|.|.-
T Consensus        95 vYYCAr  100 (109)
T d2ck0h1          95 IYYCVR  100 (109)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999974

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=7.9e-05  Score=47.47  Aligned_cols=69  Identities=16%  Similarity=0.145  Sum_probs=49.2

Q ss_pred             CCceeecCCCeEEEEEEEcCCCCCeEE-EEECCEEcc-CCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGDPEPRVS-WTKNGQPLN-SSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSL  268 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~p~p~i~-W~~~g~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  268 (356)
                      +..+.+.+|+++.|.|.+. .|..++. |..++..+. ....+.+....   =++|++++..++|.|.|.|....
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~---Gf~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRK---GFIISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTT---EEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCC---CEEEeCCCcccCeEEEEEEEECC
Confidence            3456799999999999998 6777654 554555544 33333332222   38999999999999999997663

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.69  E-value=0.00012  Score=48.11  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=42.3

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|.|.+.|...  ..+.|+|.  |+.+      .            ..++.+.  .......|+|.+++.+|++.|
T Consensus        14 G~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eDtAvY   93 (117)
T d1um5h1          14 GGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSEDSAVY   93 (117)
T ss_dssp             TCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCcceEE
Confidence            789999999987643  35789983  2211      1            1223332  234456899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|....
T Consensus        94 YCAr~~   99 (117)
T d1um5h1          94 YCARSS   99 (117)
T ss_dssp             EEEEEE
T ss_pred             EEeecc
Confidence            996533

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=8.5e-05  Score=49.06  Aligned_cols=72  Identities=17%  Similarity=0.356  Sum_probs=49.0

Q ss_pred             ceeecCCCeEEEEEEEcCC--CCCeEEEEE--CCE----EccC-----------CCceeEEEe--CCEEEEEEccCCCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGD--PEPRVSWTK--NGQ----PLNS-----------SNILDLKYK--NGVASLQIQEVFPED  256 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~--p~p~i~W~~--~g~----~~~~-----------~~~~~~~~~--~~~~~L~i~~v~~~d  256 (356)
                      ...+.+|++++|.|...+.  ..-.+.|.+  .|.    .+..           ..++.+..+  .+..+|+|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            4578999999999998653  345688988  222    1111           112333333  445789999999999


Q ss_pred             CeEEEEEEEcCCC
Q psy12422        257 EGVYVCTATNSLG  269 (356)
Q Consensus       257 ~G~Y~C~a~n~~g  269 (356)
                      +|.|.|.......
T Consensus        84 sa~YyCa~~~~~~   96 (110)
T d1u9ka_          84 SGLYRCVIYHPPN   96 (110)
T ss_dssp             CEEEEEEEECTTS
T ss_pred             CEEEEEEEeCCCC
Confidence            9999998755443

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=1.7e-05  Score=52.10  Aligned_cols=67  Identities=18%  Similarity=0.307  Sum_probs=42.3

Q ss_pred             CCeEEEEEEEcCC-CC-CeEEEEECCEEccCCCcee-EEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCc
Q psy12422        204 GQCLDLSAVVKGD-PE-PRVSWTKNGQPLNSSNILD-LKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGT  270 (356)
Q Consensus       204 g~~~~l~C~~~g~-p~-p~i~W~~~g~~~~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~  270 (356)
                      .+.+.|.|.+.|+ |. ..|.|.+||..+....... ....++    .+.|.|..-.......|+|+|.+..-.
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            5678999999775 43 4699999998765321111 111112    234666655545666899999986543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.69  E-value=7.6e-05  Score=48.93  Aligned_cols=62  Identities=15%  Similarity=0.218  Sum_probs=42.3

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||++.|+|.+.|...  ..+.|+|.  |+.+      .            .+++.+.  .......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eDTAvY   94 (117)
T d1jpth1          15 GGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVY   94 (117)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCCceEE
Confidence            789999999988643  35788883  2211      1            1223332  234456899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|....
T Consensus        95 YCAr~~  100 (117)
T d1jpth1          95 YCARDT  100 (117)
T ss_dssp             EEEEEC
T ss_pred             EEeecC
Confidence            996543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.69  E-value=8.8e-05  Score=49.22  Aligned_cols=62  Identities=19%  Similarity=0.277  Sum_probs=42.3

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++++|.|.+.|...  ..+.|+|.  |+.+      .            .+++.+.  .......|+|.+++.+|++.|
T Consensus        15 G~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eDtA~Y   94 (120)
T d1pg7x1          15 GASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSAVY   94 (120)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCcceEE
Confidence            789999999977532  35789983  3221      1            1233332  234456899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|....
T Consensus        95 YCAr~~  100 (120)
T d1pg7x1          95 YCARED  100 (120)
T ss_dssp             EEEEEC
T ss_pred             EeeecC
Confidence            997643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.69  E-value=0.00012  Score=48.95  Aligned_cols=68  Identities=26%  Similarity=0.551  Sum_probs=46.2

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEeC--CEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYKN--GVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~~--~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|+|.+.|+...  .+.|.+  .|..      +. .          ..++.+..+.  ....|.|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            3468899999999999886543  478887  2221      11 1          1244455443  345699999999


Q ss_pred             CCCeEEEEEEE
Q psy12422        255 EDEGVYVCTAT  265 (356)
Q Consensus       255 ~d~G~Y~C~a~  265 (356)
                      +|++.|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1rjca1          88 EDTAMYYCAAD   98 (126)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCceeEEEee
Confidence            99999999644

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.69  E-value=5.4e-05  Score=50.44  Aligned_cols=60  Identities=17%  Similarity=0.204  Sum_probs=40.0

Q ss_pred             CCceEEEEEeccCCC----CeeEEeeC--CEEcc------c-----------CCeeEEe--cCCeEEEEEeeCCCCCCeE
Q psy12422          1 MQNVIKVKVGSTKPP----PTVKWYKG--NRELS------K-----------RDYSMSY--SDGVVSMEIIDCKPEDSGE   55 (356)
Q Consensus         1 g~~v~l~C~~~g~p~----~~v~W~k~--g~~l~------~-----------~~~~~~~--~~~~~~L~i~~~~~~D~G~   55 (356)
                      ||+++|.|.+.|..-    ..+.|+|.  |+.+.      .           +++.+..  ....+.|+|.+++.+|++.
T Consensus        15 g~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~eDsAv   94 (123)
T d1r0ah1          15 SQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETADTAI   94 (123)
T ss_dssp             TCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccccceE
Confidence            799999999876422    24689983  32221      0           1222322  2344689999999999999


Q ss_pred             EEEEE
Q psy12422         56 YKCVA   60 (356)
Q Consensus        56 Y~C~a   60 (356)
                      |.|..
T Consensus        95 YyCAr   99 (123)
T d1r0ah1          95 YYCAQ   99 (123)
T ss_dssp             EEEEE
T ss_pred             Eeecc
Confidence            99974

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=5.2e-05  Score=48.80  Aligned_cols=63  Identities=10%  Similarity=0.153  Sum_probs=39.5

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeCCEEcccCCe---eEEecCCeEE-EEEeeCCCCCCeEEEEEEEeC
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKGNRELSKRDY---SMSYSDGVVS-MEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~g~~l~~~~~---~~~~~~~~~~-L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      ++.++|.|.+.|.-+  ..|+|++||+.+.....   .....++.+. .....+...+...|+|++.+.
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHE   83 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEEC
Confidence            356899999988633  36799999998875321   1223333321 122233445556899999875

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.68  E-value=0.00023  Score=46.91  Aligned_cols=69  Identities=20%  Similarity=0.387  Sum_probs=47.5

Q ss_pred             ceeecCCCeEEEEEEEcCCCC--CeEEEEE--CCEEc------cC-------------CCceeEEEe--CCEEEEEEccC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPE--PRVSWTK--NGQPL------NS-------------SNILDLKYK--NGVASLQIQEV  252 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~--p~i~W~~--~g~~~------~~-------------~~~~~~~~~--~~~~~L~i~~v  252 (356)
                      ...+++|+++.|.|.+.|+..  -.+.|.+  .|..+      ..             ..++.+..+  .+...|.|.++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L   88 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTL   88 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeec
Confidence            346889999999999998753  3488887  33211      10             123444443  33468999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy12422        253 FPEDEGVYVCTATN  266 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n  266 (356)
                      +.+|++.|.|....
T Consensus        89 ~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          89 RAEDTGIYYCTGIY  102 (120)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             cCCCceEEEeeEec
Confidence            99999999995543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.68  E-value=0.0001  Score=49.52  Aligned_cols=69  Identities=25%  Similarity=0.485  Sum_probs=47.5

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEEC--CEEc------c----------------CCCceeEEEe--CCEEEEEE
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTKN--GQPL------N----------------SSNILDLKYK--NGVASLQI  249 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~~--g~~~------~----------------~~~~~~~~~~--~~~~~L~i  249 (356)
                      ...+++|+++.|.|.+.|+...  .+.|.+-  |..+      .                ...++.+..+  .....|.|
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i   88 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM   88 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence            4568899999999999987643  4889872  1110      0                0123444332  34567999


Q ss_pred             ccCCCCCCeEEEEEEEc
Q psy12422        250 QEVFPEDEGVYVCTATN  266 (356)
Q Consensus       250 ~~v~~~d~G~Y~C~a~n  266 (356)
                      .+++.+|++.|.|....
T Consensus        89 ~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          89 NSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             CSCCGGGCEEEEEEEES
T ss_pred             ecccccceeEEEEEEEe
Confidence            99999999999997653

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.68  E-value=0.00012  Score=48.42  Aligned_cols=68  Identities=25%  Similarity=0.404  Sum_probs=47.4

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------ccC-----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LNS-----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~~-----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+.-.  .+.|.+  .|..      +..           ..++.+..+  .+...|.|.+++
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~   87 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLK   87 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccC
Confidence            34568899999999999987643  478876  2211      111           124445444  345779999999


Q ss_pred             CCCCeEEEEEE
Q psy12422        254 PEDEGVYVCTA  264 (356)
Q Consensus       254 ~~d~G~Y~C~a  264 (356)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAR   98 (124)
T d1yedb1          88 SEDSAVYFCTR   98 (124)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEecc
Confidence            99999999954

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.68  E-value=4.1e-05  Score=49.54  Aligned_cols=60  Identities=20%  Similarity=0.391  Sum_probs=39.9

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEc------c-----------cCCeeEEe--cCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NREL------S-----------KRDYSMSY--SDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~-----------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      ||++.|.|.+.|.-  ...+.|+|.  |+.+      .           .+++.+..  ......|+|.+++.+|++.|.
T Consensus         8 G~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtAvYy   87 (107)
T d1sjva_           8 GESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTAVYY   87 (107)
T ss_dssp             TCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCSEEE
T ss_pred             CCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccceeee
Confidence            79999999997742  345789883  2221      1           12333332  334568999999999999999


Q ss_pred             EEE
Q psy12422         58 CVA   60 (356)
Q Consensus        58 C~a   60 (356)
                      |..
T Consensus        88 CA~   90 (107)
T d1sjva_          88 CYT   90 (107)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            954

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.68  E-value=4.6e-05  Score=50.28  Aligned_cols=60  Identities=22%  Similarity=0.246  Sum_probs=41.1

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------cc------------CCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------SK------------RDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~~------------~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|.|+|.+.|...  ..+.|+|.  |+.+      ..            .++.+.  .......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvY   94 (119)
T d1eapb1          15 GASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVY   94 (119)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCcceEE
Confidence            789999999987643  35789983  2221      11            123232  233456899999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCAr   98 (119)
T d1eapb1          95 FCKR   98 (119)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9953

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.68  E-value=0.00014  Score=47.94  Aligned_cols=68  Identities=24%  Similarity=0.397  Sum_probs=47.5

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC---eEEEEE--CCEEc------cC----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP---RVSWTK--NGQPL------NS----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p---~i~W~~--~g~~~------~~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|+|.+.|+.-.   .+.|.|  .|..+      ..          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            3468899999999999997653   378976  33221      11          124444443  3456799999999


Q ss_pred             CCCeEEEEEEE
Q psy12422        255 EDEGVYVCTAT  265 (356)
Q Consensus       255 ~d~G~Y~C~a~  265 (356)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1ncwh1          89 EDTATYYCAGL   99 (119)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeEe
Confidence            99999999543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.67  E-value=8.5e-05  Score=48.75  Aligned_cols=60  Identities=20%  Similarity=0.239  Sum_probs=41.4

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|.|.+.|...  ..+.|+|.  |+.+      .            ..++.+.  .......|+|.+++.+|++.|
T Consensus        15 g~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eDTAvY   94 (117)
T d1jnhb1          15 GASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVY   94 (117)
T ss_dssp             TCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCcceEE
Confidence            789999999987643  35789982  2211      1            1233333  223456899999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCAr   98 (117)
T d1jnhb1          95 SCSR   98 (117)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            9965

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.67  E-value=0.0002  Score=47.51  Aligned_cols=70  Identities=23%  Similarity=0.387  Sum_probs=47.5

Q ss_pred             CceeecCCCeEEEEEEEcCCCC--CeEEEEE--CCEEc------c-C----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPE--PRVSWTK--NGQPL------N-S----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~--~g~~~------~-~----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+..  -.+.|++  .|..+      . .          ..++.+..+  .+...|.|.+++
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~   87 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT   87 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccC
Confidence            3456899999999999988653  3488876  22211      1 1          123334332  344679999999


Q ss_pred             CCCCeEEEEEEEc
Q psy12422        254 PEDEGVYVCTATN  266 (356)
Q Consensus       254 ~~d~G~Y~C~a~n  266 (356)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (121)
T d1j05b_          88 SEDTAVYYCAPFG  100 (121)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             cCcceEEEeEeec
Confidence            9999999996543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.67  E-value=6.4e-05  Score=49.33  Aligned_cols=62  Identities=21%  Similarity=0.261  Sum_probs=42.4

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c-----------cCCeeEE--ecCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S-----------KRDYSMS--YSDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~-----------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      |+++.|+|.+.|..-  ..+.|+|.  |+.+      .           .+++.+.  .....+.|+|.+++.+|++.|.
T Consensus        15 g~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDTAvYY   94 (116)
T d1a2yb_          15 SQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYY   94 (116)
T ss_dssp             TSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccceEEE
Confidence            789999999987543  35789883  3222      1           1122232  2344568999999999999999


Q ss_pred             EEEEe
Q psy12422         58 CVATN   62 (356)
Q Consensus        58 C~a~n   62 (356)
                      |.-..
T Consensus        95 CAr~~   99 (116)
T d1a2yb_          95 CARER   99 (116)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            97543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.67  E-value=0.00017  Score=47.82  Aligned_cols=68  Identities=24%  Similarity=0.414  Sum_probs=46.8

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+...  .+.|.|  .|..      +. .          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~   88 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence            3467899999999999886533  377876  2221      11 1          124444444  3456899999999


Q ss_pred             CCCeEEEEEEE
Q psy12422        255 EDEGVYVCTAT  265 (356)
Q Consensus       255 ~d~G~Y~C~a~  265 (356)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1ol0a_          89 EDTAVYYCARE   99 (121)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccceEEEEEEe
Confidence            99999999543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.67  E-value=0.0002  Score=47.59  Aligned_cols=68  Identities=19%  Similarity=0.383  Sum_probs=47.3

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+...  .+.|.+  .|..      +. .          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            3468899999999999987643  478877  2211      11 1          123445444  3446799999999


Q ss_pred             CCCeEEEEEEE
Q psy12422        255 EDEGVYVCTAT  265 (356)
Q Consensus       255 ~d~G~Y~C~a~  265 (356)
                      +|++.|.|...
T Consensus        89 eDtavYYCAr~   99 (126)
T d1dfbh1          89 EDMALYYCVKG   99 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEEec
Confidence            99999999654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.67  E-value=6.9e-05  Score=49.47  Aligned_cols=61  Identities=18%  Similarity=0.222  Sum_probs=41.8

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|.|.+.|...  ..+.|+|.  |+.+      .            ..++.+.  .......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eDTAvY   94 (119)
T d1rz7h1          15 GATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSEDTAVY   94 (119)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcccceEE
Confidence            789999999987543  35789883  2211      1            1133332  234556899999999999999


Q ss_pred             EEEEE
Q psy12422         57 KCVAT   61 (356)
Q Consensus        57 ~C~a~   61 (356)
                      .|...
T Consensus        95 YCAr~   99 (119)
T d1rz7h1          95 YCAAD   99 (119)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            99653

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=7.8e-05  Score=49.49  Aligned_cols=60  Identities=22%  Similarity=0.292  Sum_probs=40.7

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||+|.|.|.+.|..  ...+.|+|.  |+.+      .            .+++.+.  .......|+|.+++.+|++.|
T Consensus        15 G~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eDsAvY   94 (119)
T d1qnzh_          15 GASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDDSAVY   94 (119)
T ss_dssp             TEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGGCEEE
T ss_pred             CCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccceeEE
Confidence            78999999987643  235789983  3221      1            0123332  233456799999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCA~   98 (119)
T d1qnzh_          95 YCAI   98 (119)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9964

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.66  E-value=5.5e-05  Score=50.81  Aligned_cols=62  Identities=23%  Similarity=0.434  Sum_probs=42.1

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEE---c---c-----------------cCCeeEE--ecCCeEEEEEeeCCCC
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NRE---L---S-----------------KRDYSMS--YSDGVVSMEIIDCKPE   51 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~---l---~-----------------~~~~~~~--~~~~~~~L~i~~~~~~   51 (356)
                      |+++.|+|.+.|...  -.+.|+|.  |+.   |   .                 .+++.+.  .......|+|.+++.+
T Consensus        15 g~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~l~~e   94 (127)
T d1i3ua_          15 GDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNSLKPE   94 (127)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeeccccc
Confidence            799999999987533  35789983  221   1   0                 0122222  2345568999999999


Q ss_pred             CCeEEEEEEEe
Q psy12422         52 DSGEYKCVATN   62 (356)
Q Consensus        52 D~G~Y~C~a~n   62 (356)
                      |++.|.|....
T Consensus        95 DtAvYYCAr~~  105 (127)
T d1i3ua_          95 DTAVYYCAAKT  105 (127)
T ss_dssp             GCEEEEEEEES
T ss_pred             ceeEEEEEEEe
Confidence            99999997643

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=0.00011  Score=48.70  Aligned_cols=67  Identities=19%  Similarity=0.423  Sum_probs=45.7

Q ss_pred             ceeecCCCeEEEEEEEcCCCC--CeEEEEE--CCEEc------cC-----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPE--PRVSWTK--NGQPL------NS-----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~--p~i~W~~--~g~~~------~~-----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|++++|.|.+.|+..  -.+.|++  .|..+      ..           ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~   88 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS   88 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc
Confidence            346889999999999987653  2488877  22211      11           123444433  3456799999999


Q ss_pred             CCCeEEEEEE
Q psy12422        255 EDEGVYVCTA  264 (356)
Q Consensus       255 ~d~G~Y~C~a  264 (356)
                      +|++.|.|-.
T Consensus        89 eDsAvYYCA~   98 (119)
T d1qnzh_          89 DDSAVYYCAI   98 (119)
T ss_dssp             GGCEEEEEEE
T ss_pred             cceeEEEEEE
Confidence            9999999954

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.66  E-value=9.8e-05  Score=49.16  Aligned_cols=66  Identities=23%  Similarity=0.372  Sum_probs=44.9

Q ss_pred             eeecCCCeEEEEEEEcCCCC----CeEEEEE--CCEEcc------C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        199 KTIDDGQCLDLSAVVKGDPE----PRVSWTK--NGQPLN------S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~----p~i~W~~--~g~~~~------~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ..+++|++++|.|.+.|+..    -.+.|+|  .|..+.      .          ..++.+..+  .+...|.|.+++.
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            46889999999999987542    2467986  222111      1          123444443  3346799999999


Q ss_pred             CCCeEEEEEE
Q psy12422        255 EDEGVYVCTA  264 (356)
Q Consensus       255 ~d~G~Y~C~a  264 (356)
                      +|++.|.|..
T Consensus        90 eDsAvYyCAr   99 (123)
T d1r0ah1          90 ADTAIYYCAQ   99 (123)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccceEEeecc
Confidence            9999999954

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.65  E-value=0.00012  Score=48.57  Aligned_cols=68  Identities=19%  Similarity=0.409  Sum_probs=46.9

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEeC--CEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYKN--GVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~~--~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+...  .+.|.+  .|..      +. .          ..++.+..+.  +...|.|.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~   87 (124)
T d2b1hh1           8 GAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLK   87 (124)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccc
Confidence            34568899999999999987643  377876  1211      11 1          2344444443  35789999999


Q ss_pred             CCCCeEEEEEE
Q psy12422        254 PEDEGVYVCTA  264 (356)
Q Consensus       254 ~~d~G~Y~C~a  264 (356)
                      .+|++.|.|..
T Consensus        88 ~eDTA~YYCAR   98 (124)
T d2b1hh1          88 PSDTALYYCAR   98 (124)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccceEEEEee
Confidence            99999999943

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.65  E-value=0.0002  Score=47.94  Aligned_cols=69  Identities=22%  Similarity=0.426  Sum_probs=47.2

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEeC--CEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYKN--GVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~~--~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|+|.+.|+...  .+.|.+  .|..      +. .          ..++.+..+.  ....|.|.+++.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            3468899999999999986533  488876  2211      11 1          1244444432  346799999999


Q ss_pred             CCCeEEEEEEEc
Q psy12422        255 EDEGVYVCTATN  266 (356)
Q Consensus       255 ~d~G~Y~C~a~n  266 (356)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (135)
T d1ieha_          89 EDTAVYYCAKYS  100 (135)
T ss_dssp             SSCEEEEEEEBS
T ss_pred             ccceeeEEEEec
Confidence            999999996543

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=3.4e-05  Score=50.39  Aligned_cols=66  Identities=15%  Similarity=0.171  Sum_probs=40.7

Q ss_pred             CCceEEEEEecc-CCC-CeeEEeeCCEEcccCCeeEEecCCe----EEEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVGST-KPP-PTVKWYKGNRELSKRDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      +++++|.|.+.| +|. ..|.|.++|.......+.....+|.    ..|+|..-.. +.|.|+|.+.+.....
T Consensus        20 ~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          20 ASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSST   91 (101)
T ss_dssp             CSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred             CCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence            467899999977 454 4799999886543211111223443    2566543332 4688999998865443

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00012  Score=49.41  Aligned_cols=62  Identities=13%  Similarity=0.049  Sum_probs=38.9

Q ss_pred             CCceEEEEEeccCC--CCee-EEeeC-CEE---cc-------------cCCeeE--EecCCeEEEEEeeCCCCCCeEEEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTV-KWYKG-NRE---LS-------------KRDYSM--SYSDGVVSMEIIDCKPEDSGEYKC   58 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v-~W~k~-g~~---l~-------------~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C   58 (356)
                      |++|+|.|...+.-  .... .|++. +..   +.             ..++..  ...+..++|+|.+++.+|+|.|.|
T Consensus        15 g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC   94 (118)
T d1yjdc1          15 DNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFC   94 (118)
T ss_dssp             TTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCEEEEE
T ss_pred             CCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCeEEEE
Confidence            68999999985432  2223 45552 111   10             011222  234566789999999999999999


Q ss_pred             EEEe
Q psy12422         59 VATN   62 (356)
Q Consensus        59 ~a~n   62 (356)
                      .+..
T Consensus        95 a~~~   98 (118)
T d1yjdc1          95 KIEV   98 (118)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.64  E-value=0.00011  Score=48.52  Aligned_cols=61  Identities=20%  Similarity=0.274  Sum_probs=41.8

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|...  ..+.|+|.  |+.+      .            .+++.+..  ......|+|.+++.+|++.|
T Consensus        16 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eDtA~Y   95 (122)
T d1vgeh1          16 GASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVY   95 (122)
T ss_dssp             TCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCcceEE
Confidence            789999999988643  34789883  2211      1            12333322  33456799999999999999


Q ss_pred             EEEEE
Q psy12422         57 KCVAT   61 (356)
Q Consensus        57 ~C~a~   61 (356)
                      .|...
T Consensus        96 YCAr~  100 (122)
T d1vgeh1          96 YCARD  100 (122)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            99764

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.64  E-value=0.00013  Score=48.17  Aligned_cols=67  Identities=22%  Similarity=0.454  Sum_probs=45.9

Q ss_pred             ceeecCCCeEEEEEEEcCCCC--CeEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPE--PRVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~--p~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+..  -.+.|.+  .|..      +. .          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            346889999999999988653  3478877  2211      11 1          123344433  3346799999999


Q ss_pred             CCCeEEEEEE
Q psy12422        255 EDEGVYVCTA  264 (356)
Q Consensus       255 ~d~G~Y~C~a  264 (356)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (121)
T d2p49b1          89 EDTATYYCAA   98 (121)
T ss_dssp             GGCEEEEEEE
T ss_pred             cceeEEeeec
Confidence            9999999954

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.63  E-value=0.00024  Score=47.31  Aligned_cols=69  Identities=22%  Similarity=0.435  Sum_probs=47.2

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc-------cC----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL-------NS----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~-------~~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|+|.+.|+...  .+.|.+  .|..+       ..          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~   88 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc
Confidence            3467889999999999886533  378876  22111       11          234445544  3456799999999


Q ss_pred             CCCeEEEEEEEc
Q psy12422        255 EDEGVYVCTATN  266 (356)
Q Consensus       255 ~d~G~Y~C~a~n  266 (356)
                      +|++.|.|....
T Consensus        89 eDTavYYCAR~~  100 (127)
T d2fx7h1          89 EDTAVYYCAREG  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecc
Confidence            999999996543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.63  E-value=0.00022  Score=47.31  Aligned_cols=69  Identities=17%  Similarity=0.334  Sum_probs=47.2

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|+|.+.|+...  .+.|.+  .|..      +. .          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            3467899999999999987643  378877  1211      11 1          123444443  3456799999999


Q ss_pred             CCCeEEEEEEEc
Q psy12422        255 EDEGVYVCTATN  266 (356)
Q Consensus       255 ~d~G~Y~C~a~n  266 (356)
                      +|++.|.|...+
T Consensus        89 eDTAvYYCAr~~  100 (122)
T d1bz7b1          89 EDTAIYYCTRGG  100 (122)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCceEEEeecCC
Confidence            999999996543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.63  E-value=0.00011  Score=48.59  Aligned_cols=62  Identities=18%  Similarity=0.318  Sum_probs=42.1

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEE------cc------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NRE------LS------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~------l~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||++.|.|.+.|..-  ..+.|+|.  |+.      +.            .+++.+.  .......|.|.+++.+|++.|
T Consensus        15 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eDtAvY   94 (123)
T d1mqkh_          15 GGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDTAMY   94 (123)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCcccce
Confidence            799999999987543  34789883  321      11            1123332  233456799999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|....
T Consensus        95 YCAr~~  100 (123)
T d1mqkh_          95 YCVRHE  100 (123)
T ss_dssp             EEEEEE
T ss_pred             eEEecC
Confidence            997644

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.63  E-value=8e-05  Score=49.58  Aligned_cols=60  Identities=18%  Similarity=0.226  Sum_probs=41.5

Q ss_pred             CCceEEEEEeccCCCC--eeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPPP--TVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~--~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|.|.+.|....  .+.|+|.  |+.+      .            ..++.+.  .......|.|.+++.+|++.|
T Consensus        14 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eDTAvY   93 (126)
T d1lmka1          14 GRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSEDSAVY   93 (126)
T ss_dssp             TCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCcceEE
Confidence            7899999999886433  4788882  2211      1            1233333  334557899999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        94 YCAr   97 (126)
T d1lmka1          94 YCAR   97 (126)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            9964

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.61  E-value=0.00034  Score=46.94  Aligned_cols=70  Identities=17%  Similarity=0.347  Sum_probs=48.1

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-----------CCCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-----------SSNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-----------~~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+...  .+.|.+  .|..      +.           ...++.+..+  .+...|.+.+++.
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~   87 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRS   87 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCC
Confidence            4568899999999999987643  377876  2211      11           1234455544  3456899999999


Q ss_pred             CCCeEEEEEEEcC
Q psy12422        255 EDEGVYVCTATNS  267 (356)
Q Consensus       255 ~d~G~Y~C~a~n~  267 (356)
                      +|++.|.|.....
T Consensus        88 eDtA~YYCAr~~~  100 (133)
T d1rzfh1          88 DDTAVYYCASNSI  100 (133)
T ss_dssp             GGCEEEEEEEEEC
T ss_pred             CCCEEEEeeeccC
Confidence            9999999955433

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.61  E-value=0.00012  Score=48.32  Aligned_cols=60  Identities=22%  Similarity=0.367  Sum_probs=40.8

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEc------c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|.|.+.|..  ...+.|+|.  |+.+      .            .+++.+..  ......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eDtAvY   94 (121)
T d2p49b1          15 GGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDTATY   94 (121)
T ss_dssp             TCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccceeEE
Confidence            78999999997753  345789883  2221      1            01233332  23446799999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCAr   98 (121)
T d2p49b1          95 YCAA   98 (121)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            9965

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.61  E-value=0.00021  Score=46.89  Aligned_cols=67  Identities=21%  Similarity=0.388  Sum_probs=46.6

Q ss_pred             eeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------cC----------CCceeEEEe--CCEEEEEEccCCCCC
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------NS----------SNILDLKYK--NGVASLQIQEVFPED  256 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~~----------~~~~~~~~~--~~~~~L~i~~v~~~d  256 (356)
                      ..+++|+++.|.|.+.|+...  .+.|.+  .|..+      ..          ..++.+..+  .+...|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            468899999999999987643  488877  22111      11          123444443  334679999999999


Q ss_pred             CeEEEEEEE
Q psy12422        257 EGVYVCTAT  265 (356)
Q Consensus       257 ~G~Y~C~a~  265 (356)
                      ++.|.|-..
T Consensus        90 tA~YyCAr~   98 (118)
T d1lo4h1          90 TAIYYCARG   98 (118)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeccc
Confidence            999999543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.61  E-value=0.00012  Score=48.83  Aligned_cols=61  Identities=18%  Similarity=0.318  Sum_probs=42.0

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|...  ..+.|+|.  |+.+      .            ..++.+.  .......|+|.+++.+|++.|
T Consensus        14 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eDtAvY   93 (124)
T d1zvya1          14 GGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIY   93 (124)
T ss_dssp             TCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCcceEE
Confidence            789999999987543  35789983  2221      1            1223332  233556899999999999999


Q ss_pred             EEEEE
Q psy12422         57 KCVAT   61 (356)
Q Consensus        57 ~C~a~   61 (356)
                      .|...
T Consensus        94 YCAr~   98 (124)
T d1zvya1          94 TCGAT   98 (124)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            99764

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.61  E-value=0.00025  Score=46.96  Aligned_cols=69  Identities=20%  Similarity=0.396  Sum_probs=47.2

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+.-.  .+.|.|  .|..      +. .          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            3468899999999999987643  378876  2211      11 1          123444433  3446799999999


Q ss_pred             CCCeEEEEEEEc
Q psy12422        255 EDEGVYVCTATN  266 (356)
Q Consensus       255 ~d~G~Y~C~a~n  266 (356)
                      +|++.|.|-...
T Consensus        89 eDtAvYYCAr~~  100 (123)
T d1mqkh_          89 EDTAMYYCVRHE  100 (123)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcccceeEEecC
Confidence            999999996543

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.60  E-value=3.2e-06  Score=55.88  Aligned_cols=69  Identities=17%  Similarity=0.206  Sum_probs=43.1

Q ss_pred             CCCeEEEEEEEcC-CCC-CeEEEEECCEEccCCCceeE-E-EeCCE---EEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        203 DGQCLDLSAVVKG-DPE-PRVSWTKNGQPLNSSNILDL-K-YKNGV---ASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       203 ~g~~~~l~C~~~g-~p~-p~i~W~~~g~~~~~~~~~~~-~-~~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      .+..++|.|.+.| +|. ..|.|.+||..+........ . .++..   +.|.|..-..++...|+|+|.+.....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~   94 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV   94 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcE
Confidence            3567899999987 553 36999999998874322111 1 11221   334444333345668999999976543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=5.4e-05  Score=46.64  Aligned_cols=51  Identities=31%  Similarity=0.617  Sum_probs=39.6

Q ss_pred             CCCeEEEEEEEcCCCCCeEEEEECCEEccCCCceeEEEeCCEEEEEEccCCC-CCCeEEEEEE
Q psy12422        203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFP-EDEGVYVCTA  264 (356)
Q Consensus       203 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a  264 (356)
                      .|.+|+|+|...+  .-.|.|.+|+..++.....         .|.+.+.+. +++|.|.|..
T Consensus        13 SGTtV~LTCP~~~--~~~I~Wkkn~~~i~g~~~~---------~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2          13 SGTSVELTCPLDS--DENLKWEKNGQELPQKHDK---------HLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             ETTEEEEECSSCC--CTTCEEEETTEEECSCCCS---------EEEEESCCTTTSCEEEEEEC
T ss_pred             eCCEEEEECCCCC--CCceEEeeccccCCCCCCc---------EEEEccccccccCcceEEec
Confidence            5999999999754  3469999999988754321         577778766 7999999954

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.60  E-value=0.00032  Score=46.16  Aligned_cols=69  Identities=17%  Similarity=0.374  Sum_probs=47.6

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|.|.+.|+...  .+.|.+  .|..      +. .          ..++.+..+  .+...|.|.+++
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~   87 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence            34568899999999999986643  477876  2211      11 1          134444443  345789999999


Q ss_pred             CCCCeEEEEEEE
Q psy12422        254 PEDEGVYVCTAT  265 (356)
Q Consensus       254 ~~d~G~Y~C~a~  265 (356)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (120)
T d1ad9b1          88 SEDTAFYFCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEEEc
Confidence            999999999653

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.59  E-value=0.00017  Score=48.29  Aligned_cols=68  Identities=18%  Similarity=0.388  Sum_probs=46.8

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------c-C----------CCceeEEEeC--CEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------N-S----------SNILDLKYKN--GVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~-~----------~~~~~~~~~~--~~~~L~i~~v~  253 (356)
                      ....+++|+++.|+|.+.|+...  .+.|.+  .|..+      . .          ..++.+..+.  +...|.|.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLR   87 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecC
Confidence            34568899999999999987633  488876  22111      1 1          1234444443  34679999999


Q ss_pred             CCCCeEEEEEE
Q psy12422        254 PEDEGVYVCTA  264 (356)
Q Consensus       254 ~~d~G~Y~C~a  264 (356)
                      .+|++.|.|-.
T Consensus        88 ~eDtA~YYCAr   98 (130)
T d1rzga1          88 SEDTAVFYCAS   98 (130)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCccEEEEEEE
Confidence            99999999954

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.59  E-value=5.1e-05  Score=47.62  Aligned_cols=63  Identities=6%  Similarity=0.071  Sum_probs=40.3

Q ss_pred             CeEEEEEEEcCCCCC--eEEEEECCEEccCCCceeEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        205 QCLDLSAVVKGDPEP--RVSWTKNGQPLNSSNILDLKYKNGVASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       205 ~~~~l~C~~~g~p~p--~i~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ..++|.|.+.|+-|.  .|.|.+||..+..........++.-..+.+..+..  ...|+|.+.+...
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~--~~~yTC~V~H~~~   78 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYED--SNSVTCSVQHDNK   78 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETT--TTTCEEEEEETTE
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCC--CCEEEEEEEECCc
Confidence            456899999886544  48899999887654433332233333444444443  4479999998643

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.59  E-value=0.00012  Score=48.51  Aligned_cols=61  Identities=16%  Similarity=0.311  Sum_probs=41.3

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||++.|+|.+.|..-  ..+.|+|.  |+.+      .            .+++.+..  ......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eDtAvY   94 (121)
T d1ol0a_          15 GGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAEDTAVY   94 (121)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccccceEE
Confidence            799999999987532  34688873  2221      1            12333332  23456899999999999999


Q ss_pred             EEEEE
Q psy12422         57 KCVAT   61 (356)
Q Consensus        57 ~C~a~   61 (356)
                      .|...
T Consensus        95 YCAr~   99 (121)
T d1ol0a_          95 YCARE   99 (121)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99653

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.59  E-value=0.00013  Score=48.69  Aligned_cols=62  Identities=16%  Similarity=0.255  Sum_probs=42.2

Q ss_pred             CCceEEEEEeccCCCC--eeEEeeC--CEEc------c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPPP--TVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~--~v~W~k~--g~~l------~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|....  .+.|+|.  |+.+      .            .+++.+..  ......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eDTA~Y   94 (128)
T d2nxyd1          15 GSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVY   94 (128)
T ss_dssp             TCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccCceEE
Confidence            7899999999886443  4688772  2211      0            12333332  23456899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|....
T Consensus        95 YCAr~~  100 (128)
T d2nxyd1          95 FCAGVY  100 (128)
T ss_dssp             EEEEEE
T ss_pred             EEeEEe
Confidence            997643

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.59  E-value=0.00013  Score=48.09  Aligned_cols=61  Identities=20%  Similarity=0.264  Sum_probs=41.8

Q ss_pred             CCceEEEEEeccCCCC--eeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPPP--TVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~--~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|.|.+.|....  .+.|+|.  |+.+      .            .+++.+.  .......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eDTAvY   94 (120)
T d1ad9b1          15 GSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSEDTAFY   94 (120)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCcceEE
Confidence            7899999999875433  5788883  2211      1            1233332  234557899999999999999


Q ss_pred             EEEEE
Q psy12422         57 KCVAT   61 (356)
Q Consensus        57 ~C~a~   61 (356)
                      .|...
T Consensus        95 YCAr~   99 (120)
T d1ad9b1          95 FCARE   99 (120)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99653

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.59  E-value=8.1e-05  Score=47.89  Aligned_cols=60  Identities=15%  Similarity=0.269  Sum_probs=41.3

Q ss_pred             CceEEEEEecc-CCCC-eeEEeeCCEEcccCC--eeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          2 QNVIKVKVGST-KPPP-TVKWYKGNRELSKRD--YSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         2 ~~v~l~C~~~g-~p~~-~v~W~k~g~~l~~~~--~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      +.++|.|.+.| +|.. .|+|++||..+....  ......++.+    .|+|.   .+|...|+|.+.+..
T Consensus        17 ~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          17 GRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSS   84 (96)
T ss_dssp             TEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGG
T ss_pred             CeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCC
Confidence            57899999977 5655 799999999886432  1234555554    34443   456668999998753

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.59  E-value=0.00012  Score=48.55  Aligned_cols=62  Identities=16%  Similarity=0.251  Sum_probs=42.0

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|..-  ..+.|+|.  |+.+      .            .+++.+.  .......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eDTAvY   94 (122)
T d1bz7b1          15 GGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIY   94 (122)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccCceEE
Confidence            789999999987643  34789883  2211      1            1223332  223556899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|...+
T Consensus        95 YCAr~~  100 (122)
T d1bz7b1          95 YCTRGG  100 (122)
T ss_dssp             EEEEEC
T ss_pred             EeecCC
Confidence            996543

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.58  E-value=9.8e-05  Score=46.26  Aligned_cols=61  Identities=10%  Similarity=0.087  Sum_probs=41.2

Q ss_pred             CceEEEEEeccC-CC-CeeEEeeCCEEcccCCeeEEecCCeEE-EEEeeCCCCCCeEEEEEEEeCC
Q psy12422          2 QNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDYSMSYSDGVVS-MEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         2 ~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~~~~~~~~~~~-L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      +.+.|.|.+.|. |. ..|+|.+||..+..........+|.++ +.+...  .....|+|.+.+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~--~~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKY--EDSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEE--TTTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEec--CCCCEEEEEEEECC
Confidence            357899999776 33 368999999988765555555666543 333333  34456999998864

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.58  E-value=9.2e-05  Score=49.47  Aligned_cols=61  Identities=20%  Similarity=0.365  Sum_probs=40.1

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c-c-----------CCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S-K-----------RDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~-~-----------~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||++.|+|.+.|...  ..+.|+|.  |+.+      . .           +++.+..  ......|+|.+++.+|++.|
T Consensus        14 g~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eDTAvY   93 (126)
T d1rjca1          14 GQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPEDTAMY   93 (126)
T ss_dssp             TCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcccCcee
Confidence            789999999977533  35789883  3222      1 1           1333332  23445799999999999999


Q ss_pred             EEEEE
Q psy12422         57 KCVAT   61 (356)
Q Consensus        57 ~C~a~   61 (356)
                      .|...
T Consensus        94 YCAr~   98 (126)
T d1rjca1          94 YCAAD   98 (126)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            99753

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=4.5e-05  Score=50.01  Aligned_cols=74  Identities=12%  Similarity=0.149  Sum_probs=44.2

Q ss_pred             CCceeecCCCeEEEEEEEcCC-CC---CeEEEEECCEEccCCCceeEEEe-CC----EEEEEEccCCCCCCeEEEEEEEc
Q psy12422        196 LTDKTIDDGQCLDLSAVVKGD-PE---PRVSWTKNGQPLNSSNILDLKYK-NG----VASLQIQEVFPEDEGVYVCTATN  266 (356)
Q Consensus       196 ~~~~~v~~g~~~~l~C~~~g~-p~---p~i~W~~~g~~~~~~~~~~~~~~-~~----~~~L~i~~v~~~d~G~Y~C~a~n  266 (356)
                      |....+..++.++|.|.+.|+ |.   ..+.|++++.............. ++    .+.|.|..-..+....|+|++.+
T Consensus         8 Ps~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H   87 (103)
T d1fp5a1           8 PSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTH   87 (103)
T ss_dssp             CCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             cCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEE
Confidence            333446668889999999874 53   25778888876654322222222 22    23444443333346789999998


Q ss_pred             CCC
Q psy12422        267 SLG  269 (356)
Q Consensus       267 ~~g  269 (356)
                      ..-
T Consensus        88 ~~l   90 (103)
T d1fp5a1          88 PHL   90 (103)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            654

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.58  E-value=8.2e-05  Score=48.96  Aligned_cols=69  Identities=22%  Similarity=0.393  Sum_probs=46.5

Q ss_pred             CceeecCCCeEEEEEEEcCCCC--CeEEEEE--CCEE------ccC-----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPE--PRVSWTK--NGQP------LNS-----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~--~g~~------~~~-----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ....+++|+++.|+|.+.|+..  -.+.|.|  .|..      +..           ..++.+..+  .+...|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            3457889999999999998653  2477876  2211      111           123333333  345689999999


Q ss_pred             CCCCeEEEEEEE
Q psy12422        254 PEDEGVYVCTAT  265 (356)
Q Consensus       254 ~~d~G~Y~C~a~  265 (356)
                      .+|++.|.|-..
T Consensus        88 ~eDtAvYYCAr~   99 (118)
T d1ct8b1          88 TEDSAIYYCARY   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeee
Confidence            999999999543

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.57  E-value=9.2e-05  Score=49.06  Aligned_cols=68  Identities=22%  Similarity=0.320  Sum_probs=46.7

Q ss_pred             ceeecCCCeEEEEEEEcCCCC--C--eEEEEE--CCEEc------cC----------CCceeEEEe--CCEEEEEEccCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPE--P--RVSWTK--NGQPL------NS----------SNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~--p--~i~W~~--~g~~~------~~----------~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ...+++|+++.|.|.+.|+..  .  .+.|+|  .|..+      ..          ..++.+..+  .+...|.|.+++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~   88 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT   88 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence            346889999999999998653  2  378987  22211      11          124444443  334679999999


Q ss_pred             CCCCeEEEEEEE
Q psy12422        254 PEDEGVYVCTAT  265 (356)
Q Consensus       254 ~~d~G~Y~C~a~  265 (356)
                      .+|++.|.|...
T Consensus        89 ~eDtAvYYCAr~  100 (120)
T d1ai1h1          89 NEDTAMYYCSRE  100 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccceeEEEEEec
Confidence            999999999543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.57  E-value=0.00016  Score=48.42  Aligned_cols=62  Identities=16%  Similarity=0.266  Sum_probs=41.7

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|...  ..+.|+|.  |+.+      .            .+++.+..  ......|.|.+++.+|++.|
T Consensus        15 G~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eDTAvY   94 (135)
T d1ieha_          15 GGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSEDTAVY   94 (135)
T ss_dssp             TCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSSCEEE
T ss_pred             CCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcccceee
Confidence            789999999987543  35789883  3222      1            12233322  23446899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|....
T Consensus        95 YCAr~~  100 (135)
T d1ieha_          95 YCAKYS  100 (135)
T ss_dssp             EEEEBS
T ss_pred             EEEEec
Confidence            996543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.57  E-value=0.00037  Score=46.22  Aligned_cols=69  Identities=20%  Similarity=0.349  Sum_probs=47.4

Q ss_pred             ceeecCCCeEEEEEEEcCCCC--CeEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPE--PRVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~--p~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+-.  -.+.|.+  .|..      +. .          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~   88 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence            356889999999999988653  3478877  2211      11 1          124445444  3457899999999


Q ss_pred             CCCeEEEEEEEc
Q psy12422        255 EDEGVYVCTATN  266 (356)
Q Consensus       255 ~d~G~Y~C~a~n  266 (356)
                      +|++.|.|-...
T Consensus        89 eDTAvYYCAr~~  100 (125)
T d1op3h1          89 EDTAIYYCARKG  100 (125)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceeEeEeecc
Confidence            999999996543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00012  Score=48.13  Aligned_cols=60  Identities=22%  Similarity=0.232  Sum_probs=40.5

Q ss_pred             CCceEEEEEeccCC--CCeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKP--PPTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p--~~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|.-  ...+.|+|.  |+.+      .            ..++.+.  .......|+|.+++.+|++.|
T Consensus        15 G~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eDtAvY   94 (117)
T d1mfah1          15 GASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSEDSAVY   94 (117)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCcceEE
Confidence            78999999998753  235788883  3221      1            0122232  234456899999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCAr   98 (117)
T d1mfah1          95 YCTR   98 (117)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9964

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.57  E-value=0.00012  Score=48.91  Aligned_cols=60  Identities=15%  Similarity=0.197  Sum_probs=41.9

Q ss_pred             CCceEEEEEeccCCC---CeeEEeeC--CEEcc------c-----------CCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP---PTVKWYKG--NRELS------K-----------RDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~---~~v~W~k~--g~~l~------~-----------~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||++.|.|.+.|..-   ..+.|+|.  |+.+.      .           +++.+.  .......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eDtAvY   94 (127)
T d3cx5j1          15 SQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTEDTATY   94 (127)
T ss_dssp             TSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccccceEE
Confidence            789999999987643   35789983  33321      0           122222  234557899999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 yCAr   98 (127)
T d3cx5j1          95 YCAR   98 (127)
T ss_dssp             EEEE
T ss_pred             Eeee
Confidence            9974

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.57  E-value=6.4e-05  Score=48.59  Aligned_cols=65  Identities=26%  Similarity=0.504  Sum_probs=42.8

Q ss_pred             eecCCCeEEEEEEEcCCCC--CeEEEEEC--CEEc------cC----------CCceeEEEeC--CEEEEEEccCCCCCC
Q psy12422        200 TIDDGQCLDLSAVVKGDPE--PRVSWTKN--GQPL------NS----------SNILDLKYKN--GVASLQIQEVFPEDE  257 (356)
Q Consensus       200 ~v~~g~~~~l~C~~~g~p~--p~i~W~~~--g~~~------~~----------~~~~~~~~~~--~~~~L~i~~v~~~d~  257 (356)
                      .+++|+++.|.|.+.|+-.  -.+.|.+.  |..+      ..          ..++.+..+.  +...|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            4678999999999987643  34778762  2111      11          1234444432  346799999999999


Q ss_pred             eEEEEEE
Q psy12422        258 GVYVCTA  264 (356)
Q Consensus       258 G~Y~C~a  264 (356)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999954

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.56  E-value=8.7e-05  Score=48.78  Aligned_cols=60  Identities=28%  Similarity=0.330  Sum_probs=41.0

Q ss_pred             CCceEEEEEeccCCCC--eeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPPP--TVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~--~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||++.|+|.+.|...-  .+.|+|.  |+.+      .            .+++.+.  .......|+|.+++.+|++.|
T Consensus        15 g~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvY   94 (118)
T d2jelh1          15 GVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIY   94 (118)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCcceee
Confidence            7999999999876443  5789883  3211      1            0122222  234456899999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCAr   98 (118)
T d2jelh1          95 YCAR   98 (118)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            9953

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.56  E-value=0.00023  Score=46.90  Aligned_cols=62  Identities=18%  Similarity=0.260  Sum_probs=42.1

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEcc---------c-----------CCeeEE--ecCCeEEEEEeeCCCCCCe
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NRELS---------K-----------RDYSMS--YSDGVVSMEIIDCKPEDSG   54 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l~---------~-----------~~~~~~--~~~~~~~L~i~~~~~~D~G   54 (356)
                      |+++.|.|.+.|...  ..+.|+|.  |+.+.         .           +++.+.  .......|+|.+++.+|++
T Consensus        15 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~eDtA   94 (120)
T d1dlfh_          15 GGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRAEDTG   94 (120)
T ss_dssp             TCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccCCCce
Confidence            789999999987533  45789983  32210         0           123332  2234568999999999999


Q ss_pred             EEEEEEEe
Q psy12422         55 EYKCVATN   62 (356)
Q Consensus        55 ~Y~C~a~n   62 (356)
                      .|.|....
T Consensus        95 vYYCA~~~  102 (120)
T d1dlfh_          95 IYYCTGIY  102 (120)
T ss_dssp             EEEEEEEB
T ss_pred             EEEeeEec
Confidence            99996543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.56  E-value=0.00073  Score=44.30  Aligned_cols=63  Identities=16%  Similarity=0.271  Sum_probs=42.9

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c-----------cCCeeEEe--cCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S-----------KRDYSMSY--SDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~-----------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      |+++.|+|.+.|...  ..+.|+|.  |+.+      .           ..++.+..  ......|.|.+++.+|++.|.
T Consensus        15 G~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDtA~Yy   94 (118)
T d1lo4h1          15 GGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDTAIYY   94 (118)
T ss_dssp             TCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcceEEE
Confidence            789999999987643  35789883  3222      1           12333332  334568999999999999999


Q ss_pred             EEEEeC
Q psy12422         58 CVATNK   63 (356)
Q Consensus        58 C~a~n~   63 (356)
                      |.....
T Consensus        95 CAr~~~  100 (118)
T d1lo4h1          95 CARGTS  100 (118)
T ss_dssp             EEEEET
T ss_pred             ecccCC
Confidence            965433

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.56  E-value=0.00019  Score=47.69  Aligned_cols=61  Identities=16%  Similarity=0.236  Sum_probs=41.2

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |++|.|.|.+.|...  ..+.|+|.  |+.+      .            ..++.+.  .......|+|.+++.+|++.|
T Consensus        15 G~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eDtAvY   94 (121)
T d1j05b_          15 GASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVY   94 (121)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCcceEE
Confidence            789999999977532  35789883  3222      1            1123332  223446799999999999999


Q ss_pred             EEEEE
Q psy12422         57 KCVAT   61 (356)
Q Consensus        57 ~C~a~   61 (356)
                      .|...
T Consensus        95 YCAr~   99 (121)
T d1j05b_          95 YCAPF   99 (121)
T ss_dssp             EEEEE
T ss_pred             EeEee
Confidence            99754

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=6.1e-05  Score=49.28  Aligned_cols=64  Identities=13%  Similarity=0.196  Sum_probs=41.0

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccC--CeeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKR--DYSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~--~~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      ++.+.|.|.+.|. |. ..|+|++||......  .......++.+    .|.|..-.....-.|+|++.+..
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            3578999999774 54 479999999986532  11233445543    45554432233457999998863

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.55  E-value=0.00023  Score=47.08  Aligned_cols=69  Identities=22%  Similarity=0.428  Sum_probs=47.6

Q ss_pred             ceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------cC-------------CCceeEEEe--CCEEEEEEccC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------NS-------------SNILDLKYK--NGVASLQIQEV  252 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~~-------------~~~~~~~~~--~~~~~L~i~~v  252 (356)
                      ...+++|+++.|.|.+.|+...  .+.|++  .|..+      ..             ..++.+..+  .+...|.|.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL   88 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeee
Confidence            3468899999999999887643  488986  22211      10             123444443  33467999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy12422        253 FPEDEGVYVCTATN  266 (356)
Q Consensus       253 ~~~d~G~Y~C~a~n  266 (356)
                      +.+|++.|.|....
T Consensus        89 ~~eDTAvYYCar~~  102 (122)
T d1q9rb1          89 RAEDSATYYCARDH  102 (122)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             ccCcceEEEEEecC
Confidence            99999999996533

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00011  Score=44.60  Aligned_cols=61  Identities=21%  Similarity=0.424  Sum_probs=43.9

Q ss_pred             CCCeEEEEEEEcCCCCCeEEEEECCEEccCCCc-eeEEEeCCEEEEEEccCCC-CCCeEEEEEEEcC
Q psy12422        203 DGQCLDLSAVVKGDPEPRVSWTKNGQPLNSSNI-LDLKYKNGVASLQIQEVFP-EDEGVYVCTATNS  267 (356)
Q Consensus       203 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~-~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~  267 (356)
                      .|.+|.|+|.-  .+...|.|.+++..+..... ........  .|.+.+.+. +++|.|.|.+...
T Consensus         9 SGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~--~l~L~dfSe~e~sGyY~C~~~~~   71 (91)
T d1xiwa_           9 SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRGS   71 (91)
T ss_dssp             ETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETT--EEEETTCCHHHHCEEEEEEETTS
T ss_pred             eCCEEEEECCC--CCCCceeeeeccccccCCCcccccccccc--eEEecccCccccCceEEEEcCCC
Confidence            58999999964  35577999999988875321 11222223  688899887 7999999998654

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.55  E-value=8.4e-05  Score=48.87  Aligned_cols=62  Identities=18%  Similarity=0.229  Sum_probs=42.0

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEcc------c-----------CCeeEE--ecCCeEEEEEeeCCCCCCeEEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NRELS------K-----------RDYSMS--YSDGVVSMEIIDCKPEDSGEYK   57 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l~------~-----------~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~   57 (356)
                      ||++.|+|.+.|...  ..+.|+|.  |+.+.      .           +++.+.  .......|+|.+++.+|++.|.
T Consensus        15 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDTAvYy   94 (116)
T d1fn4b1          15 SETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYY   94 (116)
T ss_dssp             TSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCCEEEE
T ss_pred             CCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCCEEEE
Confidence            789999999987543  35789982  33221      1           222222  2334568999999999999999


Q ss_pred             EEEEe
Q psy12422         58 CVATN   62 (356)
Q Consensus        58 C~a~n   62 (356)
                      |....
T Consensus        95 CAr~~   99 (116)
T d1fn4b1          95 CTRDL   99 (116)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            96543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=8.1e-05  Score=45.84  Aligned_cols=51  Identities=25%  Similarity=0.380  Sum_probs=37.4

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccCCeeEEecCCeEEEEEeeCC-CCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCK-PEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~   61 (356)
                      |-+|+|+|...+.  ..|.|-+|+..++...       +. .|.+.+.. .+|+|.|.|...
T Consensus        14 GTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~-------~~-~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          14 GTSVELTCPLDSD--ENLKWEKNGQELPQKH-------DK-HLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             TTEEEEECSSCCC--TTCEEEETTEEECSCC-------CS-EEEEESCCTTTSCEEEEEECS
T ss_pred             CCEEEEECCCCCC--CceEEeeccccCCCCC-------Cc-EEEEccccccccCcceEEecC
Confidence            6789999987543  5699999999886431       11 56666654 489999999643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.53  E-value=0.00021  Score=47.58  Aligned_cols=62  Identities=15%  Similarity=0.263  Sum_probs=41.9

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEE------cc-c-----------CCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NRE------LS-K-----------RDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~------l~-~-----------~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|...  ..+.|+|.  |+.      +. .           +++.+..  ......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eDtavY   94 (126)
T d1dfbh1          15 GRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALY   94 (126)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCcceEE
Confidence            789999999987543  35789883  221      11 1           2223322  23456899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|....
T Consensus        95 YCAr~~  100 (126)
T d1dfbh1          95 YCVKGR  100 (126)
T ss_dssp             EEEEEE
T ss_pred             EEEecc
Confidence            997543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.53  E-value=0.00032  Score=46.82  Aligned_cols=69  Identities=23%  Similarity=0.419  Sum_probs=47.0

Q ss_pred             ceeecCCCeEEEEEEEcCCCC--CeEEEEE--CCEE------cc-C----------CCceeEEEe--CCEEEEEEccCCC
Q psy12422        198 DKTIDDGQCLDLSAVVKGDPE--PRVSWTK--NGQP------LN-S----------SNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       198 ~~~v~~g~~~~l~C~~~g~p~--p~i~W~~--~g~~------~~-~----------~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ...+++|+++.|.|.+.|+..  -.+.|.+  .|..      +. .          ..++.+..+  .+...|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~   88 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRP   88 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeee
Confidence            346789999999999998653  2377876  1111      11 1          123444444  3457799999999


Q ss_pred             CCCeEEEEEEEc
Q psy12422        255 EDEGVYVCTATN  266 (356)
Q Consensus       255 ~d~G~Y~C~a~n  266 (356)
                      +|++.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (127)
T d2fb4h1          89 EDTGVYFCARDG  100 (127)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cceeEEEEEEec
Confidence            999999996543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.52  E-value=0.00028  Score=47.65  Aligned_cols=67  Identities=22%  Similarity=0.387  Sum_probs=46.1

Q ss_pred             eeecCCCeEEEEEEEcCCCC----CeEEEEE--CCEEcc----------------CCCceeEEEe--CCEEEEEEccCCC
Q psy12422        199 KTIDDGQCLDLSAVVKGDPE----PRVSWTK--NGQPLN----------------SSNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~----p~i~W~~--~g~~~~----------------~~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ..+++|+++.|.|.+.|+..    ..+.|++  .|..+.                ...++.+..+  .+...|.|.+++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            46889999999999987652    2488986  221110                1234444443  2346799999999


Q ss_pred             CCCeEEEEEEE
Q psy12422        255 EDEGVYVCTAT  265 (356)
Q Consensus       255 ~d~G~Y~C~a~  265 (356)
                      +|++.|.|-..
T Consensus        90 eDtAvYYCAr~  100 (132)
T d1tjgh1          90 VDTATYFCAHR  100 (132)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEEEe
Confidence            99999999644

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.52  E-value=0.0002  Score=48.06  Aligned_cols=60  Identities=22%  Similarity=0.270  Sum_probs=40.5

Q ss_pred             CCceEEEEEeccCC----CCeeEEeeC--CEEcc-----------------cCCeeEEe--cCCeEEEEEeeCCCCCCeE
Q psy12422          1 MQNVIKVKVGSTKP----PPTVKWYKG--NRELS-----------------KRDYSMSY--SDGVVSMEIIDCKPEDSGE   55 (356)
Q Consensus         1 g~~v~l~C~~~g~p----~~~v~W~k~--g~~l~-----------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~   55 (356)
                      ||++.|+|.+.|..    ...+.|+|.  |+.+.                 .+++.+..  ......|+|.+++.+|++.
T Consensus        15 g~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~eDtAv   94 (126)
T d1etzb1          15 SQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTSDTAT   94 (126)
T ss_dssp             TCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccccccce
Confidence            78999999987642    234679873  22110                 12333332  3345689999999999999


Q ss_pred             EEEEE
Q psy12422         56 YKCVA   60 (356)
Q Consensus        56 Y~C~a   60 (356)
                      |.|..
T Consensus        95 YyCAr   99 (126)
T d1etzb1          95 YHCAR   99 (126)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99975

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.51  E-value=0.00011  Score=48.43  Aligned_cols=69  Identities=17%  Similarity=0.381  Sum_probs=47.2

Q ss_pred             CceeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEE------cc---C----------CCceeEEEe--CCEEEEEEcc
Q psy12422        197 TDKTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQP------LN---S----------SNILDLKYK--NGVASLQIQE  251 (356)
Q Consensus       197 ~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~------~~---~----------~~~~~~~~~--~~~~~L~i~~  251 (356)
                      ....+++|+++.|.|.+.|+...  .+.|.+  .|..      +.   .          ..++.+..+  .+...|.|.+
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~   87 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNR   87 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEES
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecc
Confidence            34578999999999999987643  378887  2211      11   1          123334433  3356799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy12422        252 VFPEDEGVYVCTAT  265 (356)
Q Consensus       252 v~~~d~G~Y~C~a~  265 (356)
                      ++.+|++.|.|-..
T Consensus        88 L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          88 LRVDDTAIYYCTRA  101 (121)
T ss_dssp             CCGGGCEECEEEEE
T ss_pred             cCCCcceEEEEecc
Confidence            99999999999543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.6e-05  Score=47.45  Aligned_cols=71  Identities=14%  Similarity=0.262  Sum_probs=45.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeCCEEcccC--CeeEEecCCeEEEEEeeCCC-CCCeEEEEEEEeC-CceeEEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKP-EDSGEYKCVATNK-HGTDETNCVVIV   75 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~g~~l~~~--~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~n~-~g~~~~~~~l~v   75 (356)
                      |-+|+|+|.-  .+...|.|-|++..+...  ...+.....  .|.+.+... +++|.|.|.+... ...+...+.|..
T Consensus        10 GTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~--~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLKA   84 (91)
T d1xiwa_          10 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA   84 (91)
T ss_dssp             TTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETT--EEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEEE
T ss_pred             CCEEEEECCC--CCCCceeeeeccccccCCCcccccccccc--eEEecccCccccCceEEEEcCCCCCCCcceEEEEEe
Confidence            6789999964  334679999999887642  111222222  677788765 7899999998543 223333444443

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.51  E-value=0.00021  Score=47.94  Aligned_cols=67  Identities=24%  Similarity=0.437  Sum_probs=46.5

Q ss_pred             eeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------c-------------CCCceeEEEe--CCEEEEEEccCC
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------N-------------SSNILDLKYK--NGVASLQIQEVF  253 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~-------------~~~~~~~~~~--~~~~~L~i~~v~  253 (356)
                      ..+++|+++.|.|.+.|+...  .+.|++  .|..+      .             ...++.+..+  .+...|.|.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK   89 (131)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence            468899999999999886643  488887  22111      0             1123444444  345679999999


Q ss_pred             CCCCeEEEEEEE
Q psy12422        254 PEDEGVYVCTAT  265 (356)
Q Consensus       254 ~~d~G~Y~C~a~  265 (356)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCAR~  101 (131)
T d3c2ah1          90 TEDTAVYSCTTD  101 (131)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEecc
Confidence            999999999543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.51  E-value=0.00019  Score=47.69  Aligned_cols=62  Identities=21%  Similarity=0.281  Sum_probs=42.0

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|.-.  ..+.|+|.  |+.+      .            ..++.+..  ......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eDTAvY   94 (125)
T d1op3h1          15 GGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIY   94 (125)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCccceeE
Confidence            789999999977532  35789883  2221      1            11333322  23557899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|....
T Consensus        95 YCAr~~  100 (125)
T d1op3h1          95 YCARKG  100 (125)
T ss_dssp             EEEEEC
T ss_pred             eEeecc
Confidence            997543

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.50  E-value=0.00035  Score=46.86  Aligned_cols=66  Identities=23%  Similarity=0.363  Sum_probs=45.1

Q ss_pred             eeecCCCeEEEEEEEcCCCC----CeEEEEE--CCEEcc----------------CCCceeEEEe--CCEEEEEEccCCC
Q psy12422        199 KTIDDGQCLDLSAVVKGDPE----PRVSWTK--NGQPLN----------------SSNILDLKYK--NGVASLQIQEVFP  254 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~----p~i~W~~--~g~~~~----------------~~~~~~~~~~--~~~~~L~i~~v~~  254 (356)
                      ..+++|++++|.|.+.|+..    ..+.|++  .|..+.                ...++.+..+  .+...|.|.+++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            46888999999999987542    2467875  221110                0124444444  3356799999999


Q ss_pred             CCCeEEEEEE
Q psy12422        255 EDEGVYVCTA  264 (356)
Q Consensus       255 ~d~G~Y~C~a  264 (356)
                      +|++.|.|-.
T Consensus        90 eDtAvYyCAr   99 (126)
T d1etzb1          90 SDTATYHCAR   99 (126)
T ss_dssp             GGCEEEEEEE
T ss_pred             cccceEEEEE
Confidence            9999999964

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.50  E-value=0.0002  Score=47.71  Aligned_cols=62  Identities=19%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||++.|+|.+.|...  ..+.|+|.  |+.+      .            .+++.+.  .......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eDTavY   94 (127)
T d2fx7h1          15 GSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVY   94 (127)
T ss_dssp             TCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcccceEE
Confidence            789999999987533  35789883  3221      1            1233332  223456899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|....
T Consensus        95 YCAR~~  100 (127)
T d2fx7h1          95 YCAREG  100 (127)
T ss_dssp             EEEEEE
T ss_pred             EEeecc
Confidence            997543

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=8.3e-05  Score=48.47  Aligned_cols=62  Identities=15%  Similarity=0.221  Sum_probs=40.3

Q ss_pred             CceEEEEEeccC-CC-CeeEEeeCCEEcccCC--eeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeC
Q psy12422          2 QNVIKVKVGSTK-PP-PTVKWYKGNRELSKRD--YSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNK   63 (356)
Q Consensus         2 ~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~--~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~   63 (356)
                      +.+.|.|.+.|. |. ..|+|++||+++....  ......++.+    .|+|..-.-.....|+|.+.+.
T Consensus        19 ~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          19 DLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE   88 (101)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            468999999874 54 4799999999876421  1233445543    4555432223456799999875

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=5.4e-05  Score=50.16  Aligned_cols=64  Identities=14%  Similarity=0.329  Sum_probs=41.0

Q ss_pred             CCceEEEEEecc-CCCC-eeEEeeCCEEcccCCeeE----E---ecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGST-KPPP-TVKWYKGNRELSKRDYSM----S---YSDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~~-~v~W~k~g~~l~~~~~~~----~---~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      |++++|.|.+.| +|.. .|+|++||+++.......    .   ..++.+    .|+|..-.-.....|+|.+.+..
T Consensus        20 ~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          20 NELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             SSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             CCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            467999999976 4544 799999999987532111    1   123333    45554322233568999998853

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.49  E-value=0.00025  Score=45.38  Aligned_cols=63  Identities=14%  Similarity=0.191  Sum_probs=40.0

Q ss_pred             CceEEEEEeccC-CC-CeeEEeeCCEEcccCCee----EEecCCeEEE-EEeeCCCCCCeEEEEEEEeCC
Q psy12422          2 QNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDYS----MSYSDGVVSM-EIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         2 ~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~~----~~~~~~~~~L-~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      +.++|.|.+.|. |. ..|+|++||+.+......    ....++.+++ ....+...|...|+|.+.+..
T Consensus        16 ~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          16 GNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETT
T ss_pred             CCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECC
Confidence            568999999874 54 378999999998754211    1233444322 112333455567999998763

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.49  E-value=0.00015  Score=47.97  Aligned_cols=60  Identities=23%  Similarity=0.217  Sum_probs=41.3

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|...  ..+.|+|.  |+.+      .            ..++.+..  ......|.|.+++.+|++.|
T Consensus        15 G~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvY   94 (124)
T d1yedb1          15 GTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSEDSAVY   94 (124)
T ss_dssp             TCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCCcceEE
Confidence            789999999987543  35788883  2221      1            12333332  34556899999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCAR   98 (124)
T d1yedb1          95 FCTR   98 (124)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            9964

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.49  E-value=0.00021  Score=47.49  Aligned_cols=61  Identities=15%  Similarity=0.215  Sum_probs=39.2

Q ss_pred             CCceEEEEEeccCCCCeeEEeeC--CEEcc-------cC----------CeeEEecCCeEEEEEeeCCCCCCeEEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTVKWYKG--NRELS-------KR----------DYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT   61 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v~W~k~--g~~l~-------~~----------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   61 (356)
                      |++|+|.|...+.-...+.|||.  |+.+.       ..          ++.... .....|.|..++.+|++.|.|.+.
T Consensus        16 G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~l~l~~~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          16 GQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR-VTDTELRLQVANMSQGRTLYCTCS   94 (112)
T ss_dssp             TCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEE-EETTEEEEEEESCCSCEEEEEEEE
T ss_pred             CCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccc-ccccEEEEecCCccCCccEEEEEe
Confidence            78999999975544467899993  32210       00          111111 111368888889999999999875


Q ss_pred             e
Q psy12422         62 N   62 (356)
Q Consensus        62 n   62 (356)
                      .
T Consensus        95 ~   95 (112)
T d1fo0b_          95 A   95 (112)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.49  E-value=0.00022  Score=47.47  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=46.3

Q ss_pred             cCCceeecCCCeEEEEEEEcCCCCCeEEEEE--CCEEcc-------CCC---------ceeEEEeCCEEEEEEccCCCCC
Q psy12422        195 KLTDKTIDDGQCLDLSAVVKGDPEPRVSWTK--NGQPLN-------SSN---------ILDLKYKNGVASLQIQEVFPED  256 (356)
Q Consensus       195 ~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~--~g~~~~-------~~~---------~~~~~~~~~~~~L~i~~v~~~d  256 (356)
                      .|..+.+.+|++++|.|.....-...+.|++  .|..+.       ...         ++...... ...|.|...+.+|
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~-~~~l~l~~~~~~d   85 (112)
T d1fo0b_           7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT-DTELRLQVANMSQ   85 (112)
T ss_dssp             ECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEE-TTEEEEEEESCCS
T ss_pred             CCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccccc-ccEEEEecCCccC
Confidence            3456678899999999998655556799998  232211       000         11111111 1368888899999


Q ss_pred             CeEEEEEEEcC
Q psy12422        257 EGVYVCTATNS  267 (356)
Q Consensus       257 ~G~Y~C~a~n~  267 (356)
                      ++.|.|-..-.
T Consensus        86 sa~Y~Ca~~~~   96 (112)
T d1fo0b_          86 GRTLYCTCSAD   96 (112)
T ss_dssp             CEEEEEEEESS
T ss_pred             CccEEEEEecC
Confidence            99999986543

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.49  E-value=0.00011  Score=49.52  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=43.4

Q ss_pred             ecCCCeEEEEEEEcCC-CC---CeEEEEECCEEccCCCceeE-EE-eCCE---EEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        201 IDDGQCLDLSAVVKGD-PE---PRVSWTKNGQPLNSSNILDL-KY-KNGV---ASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       201 v~~g~~~~l~C~~~g~-p~---p~i~W~~~g~~~~~~~~~~~-~~-~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ...+..++|.|.+.|+ |.   ..++|++||..+........ .. ++..   +.|.|..-.......|+|+|.+..-
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  106 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCC
Confidence            4568889999999874 42   46889999988865332221 22 2222   3444433333345689999998763

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.48  E-value=0.00027  Score=47.29  Aligned_cols=62  Identities=15%  Similarity=0.220  Sum_probs=42.3

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      ||++.|+|.+.|..-  ..+.|+|.  |+.+      .            .+++.+.  .......|+|.+++.+|++.|
T Consensus        14 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDtAvY   93 (130)
T d1rhhb1          14 GSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDDTAVY   93 (130)
T ss_dssp             TCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCCcEEE
Confidence            789999999987543  35789883  3211      1            1233333  223456899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|....
T Consensus        94 yCAr~~   99 (130)
T d1rhhb1          94 YCARDF   99 (130)
T ss_dssp             EEEEEC
T ss_pred             EEEeec
Confidence            997643

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.48  E-value=0.00012  Score=48.21  Aligned_cols=60  Identities=20%  Similarity=0.210  Sum_probs=40.5

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------cc------------CCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------SK------------RDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~~------------~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|...  ..+.|+|.  |+.+      ..            .++.+.  .......|.|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eDtAvY   94 (118)
T d1ct8b1          15 GASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIY   94 (118)
T ss_dssp             TCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCcceEE
Confidence            789999999987532  35788882  3221      10            122222  233556899999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCAr   98 (118)
T d1ct8b1          95 YCAR   98 (118)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            9964

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.47  E-value=4.3e-05  Score=50.13  Aligned_cols=68  Identities=16%  Similarity=0.192  Sum_probs=40.4

Q ss_pred             cCCCeEEEEEEEcCC-CC---CeEEEEECCEEccCCCceeEE-EeCC-E---EEEEEccCCCCCCeEEEEEEEcCCC
Q psy12422        202 DDGQCLDLSAVVKGD-PE---PRVSWTKNGQPLNSSNILDLK-YKNG-V---ASLQIQEVFPEDEGVYVCTATNSLG  269 (356)
Q Consensus       202 ~~g~~~~l~C~~~g~-p~---p~i~W~~~g~~~~~~~~~~~~-~~~~-~---~~L~i~~v~~~d~G~Y~C~a~n~~g  269 (356)
                      ..+.+++|.|.+.++ |.   ..++|.+||..+......... ..++ .   +.|.|..-.....-.|+|++.+..-
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l   90 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF   90 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCC
Confidence            456778999999774 53   468899999876543211111 1122 1   2344333322344579999998753

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.47  E-value=0.00021  Score=47.76  Aligned_cols=62  Identities=19%  Similarity=0.294  Sum_probs=41.6

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|.|.+.|...  ..+.|+|.  |+.+      .            ..++.+..  ......|+|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eDTA~Y   94 (127)
T d2fb4h1          15 GRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPEDTGVY   94 (127)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecceeEE
Confidence            789999999987533  34788883  2211      1            12233322  23456899999999999999


Q ss_pred             EEEEEe
Q psy12422         57 KCVATN   62 (356)
Q Consensus        57 ~C~a~n   62 (356)
                      .|....
T Consensus        95 YCAr~~  100 (127)
T d2fb4h1          95 FCARDG  100 (127)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            997543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.47  E-value=0.00021  Score=47.30  Aligned_cols=62  Identities=18%  Similarity=0.293  Sum_probs=42.0

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c--------------cCCeeEE--ecCCeEEEEEeeCCCCCCe
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S--------------KRDYSMS--YSDGVVSMEIIDCKPEDSG   54 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~--------------~~~~~~~--~~~~~~~L~i~~~~~~D~G   54 (356)
                      |+++.|.|.+.|...  ..+.|+|.  |+.+      .              .+++.+.  .......|+|.+++.+|++
T Consensus        15 g~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTA   94 (122)
T d1q9rb1          15 GGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSA   94 (122)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeeccCcce
Confidence            789999999987543  35789983  3222      0              0123332  2334468999999999999


Q ss_pred             EEEEEEEe
Q psy12422         55 EYKCVATN   62 (356)
Q Consensus        55 ~Y~C~a~n   62 (356)
                      .|.|....
T Consensus        95 vYYCar~~  102 (122)
T d1q9rb1          95 TYYCARDH  102 (122)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99997633

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.45  E-value=0.0001  Score=48.11  Aligned_cols=64  Identities=14%  Similarity=0.203  Sum_probs=40.0

Q ss_pred             CCceEEEEEecc-CCC-CeeEEeeCCEEcccC--CeeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCC
Q psy12422          1 MQNVIKVKVGST-KPP-PTVKWYKGNRELSKR--DYSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKH   64 (356)
Q Consensus         1 g~~v~l~C~~~g-~p~-~~v~W~k~g~~l~~~--~~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~   64 (356)
                      ++++.|.|.+.| +|. ..|+|++||......  .......++.+    .|.|..-.-.....|+|.+.+..
T Consensus        19 ~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          19 KKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            357899999977 454 479999999876532  11123344433    45554322233557999998753

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00048  Score=43.72  Aligned_cols=70  Identities=14%  Similarity=0.045  Sum_probs=46.9

Q ss_pred             CCceEEEEEeccCCCCee-EEeeCCEEcccCCeeEEecCCeEEEEEeeCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12422          1 MQNVIKVKVGSTKPPPTV-KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV   73 (356)
Q Consensus         1 g~~v~l~C~~~g~p~~~v-~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   73 (356)
                      |+++.+.|.+. .|...+ .|.+++..+......+..+... =++|.+++..|.|.|.|.|... |....+..|
T Consensus        20 g~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~-Gf~I~~~~~~~~g~y~C~a~~~-g~~~~S~yl   90 (95)
T d1fltx_          20 GRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRK-GFIISNATYKEIGLLTCEATVN-GHLYKTNYL   90 (95)
T ss_dssp             TSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTT-EEEESSCCGGGCEEEEEEEEET-TEEEEEEEE
T ss_pred             CCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCC-CEEEeCCCcccCeEEEEEEEEC-CEEEEEEEE
Confidence            67899999995 777776 4544666665433233332222 3789999999999999999776 444334333

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.45  E-value=0.0002  Score=47.91  Aligned_cols=60  Identities=18%  Similarity=0.263  Sum_probs=41.1

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEEe--cCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|...  ..+.|+|.  |+.+      .            ..++.+..  ......|.|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eDtA~Y   94 (130)
T d1rzga1          15 GSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSEDTAVF   94 (130)
T ss_dssp             TCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCccEEE
Confidence            789999999987533  35789883  3222      1            12233322  23456799999999999999


Q ss_pred             EEEE
Q psy12422         57 KCVA   60 (356)
Q Consensus        57 ~C~a   60 (356)
                      .|..
T Consensus        95 YCAr   98 (130)
T d1rzga1          95 YCAS   98 (130)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9975

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.45  E-value=0.00019  Score=47.97  Aligned_cols=61  Identities=20%  Similarity=0.196  Sum_probs=41.5

Q ss_pred             CCceEEEEEeccCCC--CeeEEeeC--CEEc------c------------cCCeeEE--ecCCeEEEEEeeCCCCCCeEE
Q psy12422          1 MQNVIKVKVGSTKPP--PTVKWYKG--NREL------S------------KRDYSMS--YSDGVVSMEIIDCKPEDSGEY   56 (356)
Q Consensus         1 g~~v~l~C~~~g~p~--~~v~W~k~--g~~l------~------------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y   56 (356)
                      |+++.|+|.+.|...  ..+.|+|.  |+.+      .            ..++.+.  .......|.|.+++.+|++.|
T Consensus        15 g~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eDtAvY   94 (125)
T d1rihh1          15 GASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSEDSAVY   94 (125)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcccceEE
Confidence            799999999987533  35788882  3221      1            1223332  233456899999999999999


Q ss_pred             EEEEE
Q psy12422         57 KCVAT   61 (356)
Q Consensus        57 ~C~a~   61 (356)
                      .|...
T Consensus        95 YCAR~   99 (125)
T d1rihh1          95 YCARE   99 (125)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            99754

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=0.00013  Score=47.98  Aligned_cols=68  Identities=22%  Similarity=0.385  Sum_probs=46.3

Q ss_pred             eeecCCCeEEEEEEEcCCCCC--eEEEEE--CCEEc------cCC----------CceeEEEe--CCEEEEEEccCCCCC
Q psy12422        199 KTIDDGQCLDLSAVVKGDPEP--RVSWTK--NGQPL------NSS----------NILDLKYK--NGVASLQIQEVFPED  256 (356)
Q Consensus       199 ~~v~~g~~~~l~C~~~g~p~p--~i~W~~--~g~~~------~~~----------~~~~~~~~--~~~~~L~i~~v~~~d  256 (356)
                      ..+++|+++.|+|.+.|+...  .+.|++  .|..+      ...          .++.+..+  .+...|.+.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            357889999999999987643  488987  22221      111          22333333  334679999999999


Q ss_pred             CeEEEEEEEc
Q psy12422        257 EGVYVCTATN  266 (356)
Q Consensus       257 ~G~Y~C~a~n  266 (356)
                      +++|.|....
T Consensus        90 TAvYyCAr~~   99 (116)
T d1fn4b1          90 TGTYYCTRDL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEeec
Confidence            9999995543

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=6.4e-05  Score=49.12  Aligned_cols=66  Identities=12%  Similarity=0.163  Sum_probs=38.7

Q ss_pred             CCceEEEEEeccC-CC-CeeEEeeCCEEcccCCeeEEecCCeE----EEEEeeCCCCCCeEEEEEEEeCCcee
Q psy12422          1 MQNVIKVKVGSTK-PP-PTVKWYKGNRELSKRDYSMSYSDGVV----SMEIIDCKPEDSGEYKCVATNKHGTD   67 (356)
Q Consensus         1 g~~v~l~C~~~g~-p~-~~v~W~k~g~~l~~~~~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~a~n~~g~~   67 (356)
                      ++.+.|.|.+.|. |. ..|+|.+++.............++.+    .|+|..-.- +.+.|+|.+.+..+..
T Consensus        20 ~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (102)
T d1mjuh2          20 GSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASST   91 (102)
T ss_dssp             --CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGTE
T ss_pred             CCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCCE
Confidence            4679999999774 43 37999887754321111122334443    455543322 3678999999865543

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.00019  Score=46.83  Aligned_cols=69  Identities=14%  Similarity=0.284  Sum_probs=43.5

Q ss_pred             CCCeEEEEEEEcCC-CCC--eEEEEECCEEccCCCceeEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCCce
Q psy12422        203 DGQCLDLSAVVKGD-PEP--RVSWTKNGQPLNSSNILDLKYKNG----VASLQIQEVFPEDEGVYVCTATNSLGTA  271 (356)
Q Consensus       203 ~g~~~~l~C~~~g~-p~p--~i~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  271 (356)
                      .++.+.|.|.+.|+ |+.  .+.|.+|+..+...........++    .+.|.|..-.......|+|+|.+.....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~~   93 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV   93 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCCC
Confidence            46789999999884 653  478888876554211111111122    2457776666666678999999865543