Psyllid ID: psy12425

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
Protein Sequence
MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISLITL
Secondary Structure (PSIPRED)
ccccEEEcccccEEEEEEEEEccccEEEEEEccEEEcccccEEEEEEccEEEEEEccccccccEEEEEEEEcccEEEEEEEEEEEEcccccccccEEEEEEccccEEEEEEcccccccccEEEEEEEEEEcccccEEEEEEEccccEEEEcccccccEEEEEEEEEccccccccccccccEEccccccccccccccEEEEEEccEEEEEEEcccccccccccEEEEEEEEcccccEEEEEEEEccccEEEEcccccccEEEEEEEEEEcccccccccccccEEEccccccccccEEEcccccEEEEccEEEEEEEEEEEEccEEEEEEccccccccccEEEEEEccEEEEEEccccccccEEEEEEEEccccccccEEEEEEEEcccccccccccccEEEEcccEEEEEEEEEEccccEEEEEEccEEEcccccEEEEEEccEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEEEccEEEEEEEccccccccccccEEEEEEEcccccEEEEccEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEccccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEccccEEEEEEcccEEEEEEEccEccccEEEEEEEEEcccccccEEEEEEcccccccccccEEEEEEccEEEEEEEcccccccccEEEEEEEcEEcccccEEEEEEcccEEEEEEEcccccccEEEEEEEEEcccccccccccEEEEccccccccccccccEEEEEEcccEEEEEEcccccccccEEEEEEEEEccccccEEEEEEEcccEEEEEEEccccccEEEEEEEEEEcccccccccccccEEccccccccccccccccccEEEEccccEEEEEccccccccEEEEEEccEEEccccEEEEEEcccEEEEEEEcccccccEEEEEEEEEccccccccEEEEEEccccccccccccccEEEEcccEEEEEEEcccccccEEEEEEccEEEccccEEEEEEcccEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEcccccccccEEEEEcccEEEEEEEcccccccccEEEEEEEEEcccccEEEEEEcccEEEEEEEccccccEEEEEEEEEEcccccccccccccEEccccccccccccccEEEc
Coil and Loop (DISEMBL)
mpnalyipegdntkvkifyagdqpmevsltkngrvvqsddrfkftvlDDYIIIFIKEIrkedagdytvnlsnssgsvsgtftinitglpgppigpldvseitkhtctlhwnppkydgglkvTHYVVErrdismphwicisttchdTTFIVQGLTEGQEYLFHVMAVnengmgppleginpikakspydkpsppgipvvtqvggdfvnlswdkplddggsriqgywidkhevgsdaWQRVNVAicapsqinipnliegrQYEFRVYAQneaglslpssasnsvqikdpmaakapeiiVPLRNANAIQNHNAQfqctitgcpkptiswlkgsreitpsarhhifaegdTYTLIINSvygvdadeyVCRAvnkggvkstkAELIIMtapkfnvpprfrdtayfdkgenvvvkipftgypkpkitwyrdneviesgghfhvetSERHAILTIrdasnvdtapyrvvaendlgmdSAIVKIQisdrpdppqfptvedighdSLALVWrapiwdggsnitNYIVEKrehpmsswirvgntrfttmaitglspghqyEFRVYAEnvygrsdpsttsDLITTYGELlsgmeapislitl
Flexible Loop (DISEMBL)
mpnalyipegdnTKVKIFYAGDQpmevsltkngrvvqsddrfkftvldDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTlhwnppkydggLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNkggvkstkaeliimtapkfnvpprfrdtayfdkgenvvvkipftgypkpkiTWYRDNEVIESGGHFHVETSERHAILtirdasnvdtAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENvygrsdpsttSDLITTYGellsgmeapislitl
Low Complexity Region (SEG)
MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYtvnlsnssgsvsgtFtinitglpgppigplDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISLITL
Disordered region (IsUnstruct)
******I***DNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNEN*************************IPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN************************PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI********FPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRS****TSDLITTYGELLS***********
Disordered Region (DISOPRED)
MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN*VQI****AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT****************TL
Disordered Region (DISEMBL)
MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISLITL
Disordered Region (DISPRO)
*PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISLIT*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISLITL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	591	2.2.26 [Sep-21-2011]
Q23551	7158	Twitchin OS=Caenorhabditi	yes	N/A	0.952	0.078	0.411	1e-131
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.969	0.016	0.337	4e-90
Q8WZ42	34350	Titin OS=Homo sapiens GN=	no	N/A	0.969	0.016	0.337	5e-89
Q3KNY0	2849	Immunoglobulin-like and f	no	N/A	0.912	0.189	0.284	1e-50
Q86VF2	1251	Immunoglobulin-like and f	no	N/A	0.917	0.433	0.273	2e-45
Q00872	1141	Myosin-binding protein C,	no	N/A	0.878	0.454	0.280	3e-43
Q90688	1272	Myosin-binding protein C,	no	N/A	0.695	0.323	0.281	7e-39
Q14324	1141	Myosin-binding protein C,	no	N/A	0.874	0.453	0.244	6e-35
P16419	1132	Myosin-binding protein C,	no	N/A	0.886	0.462	0.255	1e-34
Q9I7U4	18141	Titin OS=Drosophila melan	no	N/A	0.639	0.020	0.281	2e-34

>sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3

 Score =  470 bits (1210), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/566 (41%), Positives = 336/566 (59%), Gaps = 3/566 (0%)

Query: 1    MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD-RFKFTVLDDYIIIFIKEIR 59
            +PN + +P GD  ++KI+++G  P   SL  N   +  D    +    DD+I+I I  + 
Sbjct: 5632 VPNTI-LPSGDLVRLKIYFSGTAPFRHSLVLNREEIDMDHPTIRIVEFDDHILITIPALS 5690

Query: 60   KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGL 119
              +AG Y   +SN SG  +  F +N+TGLP  P GPL +S I   T TL W PP  DGG 
Sbjct: 5691 VREAGRYEYTVSNDSGEATTGFWLNVTGLPEAPQGPLHISNIGPSTATLSWRPPVTDGGS 5750

Query: 120  KVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
            K+T YVVE+RD+S   W+ +++   D  +IV GL E  EY F V A NENG+G PL   +
Sbjct: 5751 KITSYVVEKRDLSKDEWVTVTSNVKDMNYIVTGLFENHEYEFRVSAQNENGIGAPLVSEH 5810

Query: 180  PIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239
            PI A+ P+D P+ P    + QVGGD+V LSW +PL DGG R++GY ++K E   D W R 
Sbjct: 5811 PIIARLPFDPPTSPLNLEIVQVGGDYVTLSWQRPLSDGGGRLRGYIVEKQEEEHDEWFRC 5870

Query: 240  NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL 299
            N     P+  N+PNLI+GR+Y +RV+A N+AGLS  +    ++  +   + + P+I+ PL
Sbjct: 5871 NQNPSPPNNYNVPNLIDGRKYRYRVFAVNDAGLSDLAELDQTL-FQASGSGEGPKIVSPL 5929

Query: 300  RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
             + N        F+C I+G P+P   W KG +E+  ++++ +  +GD   LIIN +   D
Sbjct: 5930 SDLNEEVGRCVTFECEISGSPRPEYRWFKGCKELVDTSKYTLINKGDKQVLIINDLTSDD 5989

Query: 360  ADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK 419
            ADEY CRA N  G +ST+A L I T P+  +PP++       KGE + +KIP+  YP+ +
Sbjct: 5990 ADEYTCRATNSSGTRSTRANLRIKTKPRVFIPPKYHGGYEAQKGETIELKIPYKAYPQGE 6049

Query: 420  ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
              W +D E IE+   F + T ++ A L I +AS  D   YRVV EN +G DS  V + ++
Sbjct: 6050 ARWTKDGEKIENNSKFSITTDDKFATLRISNASREDYGEYRVVVENSVGSDSGTVNVTVA 6109

Query: 480  DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTM 539
            D P+PP+FP +E+I  +++ L W+ P  DGGS +TNY +EKRE    SW     +R+T  
Sbjct: 6110 DVPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYT 6169

Query: 540  AITGLSPGHQYEFRVYAENVYGRSDP 565
             I GL  G QYEFR+ AEN +G+S P
Sbjct: 6170 TIEGLRAGKQYEFRIIAENKHGQSKP 6195

Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score =  332 bits (852), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 196/580 (33%), Positives = 288/580 (49%), Gaps = 7/580 (1%)

Query: 10    GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-RKEDAGDYTV 68
             G   ++ + Y G     ++     +++Q+ ++      + Y  + +K + RK  AG Y V
Sbjct: 32432 GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSEKITIENTEHYTHLVMKNVQRKTHAGKYKV 32491

Query: 69    NLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128
              LSN+ G+V  T  + I   P  P GP+ +  + K++  + W PP  DGG  +T+YVVE+
Sbjct: 32492 QLSNAFGTVDATLDVEIQDKPDKPTGPIVIEALLKNSVVISWKPPADDGGSWITNYVVEK 32551

Query: 129   RDISM-PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
              +      W  +S+    TT  +  LTE   Y F V A N  G+  PLE  + +  KSP+
Sbjct: 32552 CEAKEGAEWQLVSSAISVTTCRIVNLTENAGYYFRVSAQNTFGISEPLEVASIVIIKSPF 32611

Query: 188   DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
             +KP  PG P +T V  D   ++W  P  DGG++I+ Y++++ E   + W  V       +
Sbjct: 32612 EKPGVPGKPTITAVTKDSCVVAWKPPASDGGAKIRNYYLERREKKQNKWIAVTTEEIRET 32671

Query: 248   QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
               ++ NLIEG +YEFRV  +N  G S  S  S  V  K  +  +AP     LRN N    
Sbjct: 32672 VFSVQNLIEGLEYEFRVKCENLGGESEWSEISEPVTPKSDVPIQAPHFKEELRNLNVRYQ 32731

Query: 308   HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GDTYTLIINSVYGVDADEYVC 365
              NA   C +TG PKP + W +  +EI      +   E  G  + LII SV   DA  Y  
Sbjct: 32732 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 32791

Query: 366   RAVNKGGVKSTKAELIIMTAPKFNVPPRFR--DTAYFDKGENVVVKIPFTGYPKPKITWY 423
             RA N+GG  S  A L +    K ++P         +  +GE V +KIPF+G P P ITW 
Sbjct: 32792 RATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ 32851

Query: 424   RDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
             +  ++I++ GH+ V  +     L   +     D   Y V A+N  G+D   V++ ++D P
Sbjct: 32852 KGQDLIDNNGHYQVIVTRSFTSLVFSNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 32911

Query: 483   DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT 542
             DPP+   V D+  DS+ L W  P  DGGS +TNYIVEK       W+RVG  R T   + 
Sbjct: 32912 DPPRGVKVSDVSRDSVNLTWTEPASDGGSKVTNYIVEKCATTAERWLRVGQARETRYTVI 32971

Query: 543   GLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGM 582
              L     Y+FRV AEN +G S PS  S+   T  +    M
Sbjct: 32972 NLFGKTSYQFRVIAENKFGLSKPSEPSEPTVTKEDKTRAM 33011

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score =  328 bits (842), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 196/580 (33%), Positives = 285/580 (49%), Gaps = 7/580 (1%)

Query: 10    GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-RKEDAGDYTV 68
             G   ++ + Y G     ++     +++Q+ +       + Y  + +K + RK  AG Y V
Sbjct: 31570 GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV 31629

Query: 69    NLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128
              LSN  G+V     + I   P  P GP+ +  + K++  + W PP  DGG  +T+YVVE+
Sbjct: 31630 QLSNVFGTVDAILDVEIQDKPDKPTGPIVIEALLKNSAVISWKPPADDGGSWITNYVVEK 31689

Query: 129   RDISM-PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
              +      W  +S+    TT  +  LTE   Y F V A N  G+  PLE  + +  KSP+
Sbjct: 31690 CEAKEGAEWQLVSSAISVTTCRIVNLTENAGYYFRVSAQNTFGISDPLEVSSVVIIKSPF 31749

Query: 188   DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
             +KP  PG P +T V  D   ++W  P  DGG++I+ Y+++K E   + W  V       +
Sbjct: 31750 EKPGAPGKPTITAVTKDSCVVAWKPPASDGGAKIRNYYLEKREKKQNKWISVTTEEIRET 31809

Query: 248   QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
               ++ NLIEG +YEFRV  +N  G S  S  S  +  K  +  +AP     LRN N    
Sbjct: 31810 VFSVKNLIEGLEYEFRVKCENLGGESEWSEISEPITPKSDVPIQAPHFKEELRNLNVRYQ 31869

Query: 308   HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GDTYTLIINSVYGVDADEYVC 365
              NA   C +TG PKP + W +  +EI      +   E  G  + LII SV   DA  Y  
Sbjct: 31870 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 31929

Query: 366   RAVNKGGVKSTKAELIIMTAPKFNVPPRFR--DTAYFDKGENVVVKIPFTGYPKPKITWY 423
             RA N+GG  S  A L +    K ++P         +  +GE V +KIPF+G P P ITW 
Sbjct: 31930 RATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ 31989

Query: 424   RDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
             +  ++I++ GH+ V  +     L   +     D   Y V A+N  G+D   V++ ++D P
Sbjct: 31990 KGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 32049

Query: 483   DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT 542
             DPP+   V D+  DS+ L W  P  DGGS ITNYIVEK       W+RVG  R T   + 
Sbjct: 32050 DPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVI 32109

Query: 543   GLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGM 582
              L     Y+FRV AEN +G S PS  S+   T  +    M
Sbjct: 32110 NLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 32149

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q3KNY0|IGFN1_MOUSE Immunoglobulin-like and fibronectin type III domain-containing protein 1 OS=Mus musculus GN=Igfn1 PE=1 SV=3

 Score =  201 bits (512), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 170/598 (28%), Positives = 254/598 (42%), Gaps = 59/598 (9%)

Query: 5    LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDR--FKFTVLDDYIIIFIKEIRKED 62
            L    G    VKI +    P++ +  K+G  V   D    +  + D Y  + +  + ++D
Sbjct: 2156 LVFKAGKPVTVKIPFQSRLPVQAAWRKDGNEVVGGDHKGIQLALADGYTWLCLPSVCRKD 2215

Query: 63   AGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT 122
            +G Y+V L +  G V   FT+ +   P PP GPL+V +  +    L W PP+ +GG  + 
Sbjct: 2216 SGRYSVTLRSEGGCVQAEFTLQVIDKPQPPQGPLEVQDCHRAGVCLRWLPPRDNGGQVIQ 2275

Query: 123  HYVVERRDISMPHWICISTTCHD-TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI 181
            HYVVERR      W+ +     D T+F    + +G++Y F V AV   G G  LE    +
Sbjct: 2276 HYVVERRQAGRSTWLKVGEPPSDSTSFTDTSVEQGKKYAFRVRAVTSVGAGDALESEEVL 2335

Query: 182  KAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV 241
             A  P   P PP  P +       + L+W  P   G + I GY I+KH+ GS+ W  VN 
Sbjct: 2336 VA--PEALPGPPSAPAILSASSQSITLTWGAPQGPGSNHILGYLIEKHKKGSNTWMAVNE 2393

Query: 242  AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRN 301
               +  +  +  L +G QYEFRV A   +G   P   S++V  +DPM         P+R+
Sbjct: 2394 QPVSERRYTVVGLRQGCQYEFRVTAVTLSGPGDPGPPSDAVFARDPMRPPG-----PVRD 2448

Query: 302  ANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI---------- 351
                       Q T T     T+SW+       P AR    A+G    L           
Sbjct: 2449 ----------LQVTDTSNTSITVSWM------VPDARDADEAQGYIVELCGSDSHQWSPC 2492

Query: 352  -INSVYGVD--------ADEYVCR--AVNKGGVKSTKAELIIMTAPKFNVPPRF------ 394
             + +V G           + Y  R  AVN GG     +   ++ A    V PRF      
Sbjct: 2493 HVGTVPGTTFTAKGLRPQEGYFVRVTAVNDGGRSQATSLDTLVHAMPATVCPRFLMDSGT 2552

Query: 395  RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNV 454
            +DT     G+++ V + F   P P++TW +D   +       V+       L I  AS  
Sbjct: 2553 KDTLMVRVGDSIRVPLSFEAAPMPEVTWLKDGLPLPKRSVTTVKAGLTQ--LLIPAASLS 2610

Query: 455  DTAPYRVVAENDLGMDSA-IVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNI 513
            D   Y V+  N  G ++     I ++  P  P    +++    ++ + W  P  D    I
Sbjct: 2611 DCGRYTVMLRNLQGKEATHSFFINVAACPQAPGSIYLQENVPGTVTVQWE-PSPDEAQGI 2669

Query: 514  T-NYIVEKREHPMSSWIRVGN-TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
              +Y V  R     SW  V +  R     + G+ PGH+Y FRV A+N  G S PS TS
Sbjct: 2670 PLHYTVLMRSSSHRSWHEVADHVRTNRFTLLGVLPGHEYHFRVLAKNELGVSKPSDTS 2727

Mus musculus (taxid: 10090)

>sp|Q86VF2|IGFN1_HUMAN Immunoglobulin-like and fibronectin type III domain-containing protein 1 OS=Homo sapiens GN=IGFN1 PE=1 SV=2

 Score =  184 bits (467), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 163/595 (27%), Positives = 249/595 (41%), Gaps = 53/595 (8%)

Query: 5    LYIPEGDNTKVKIFYAGDQPMEVSLTKNG-RVVQSDDR-FKFTVLDDYIIIFIKEIRKED 62
            L +  G    VKI +    P++ +  K+G  VV S DR  +  + D Y  + +    ++D
Sbjct: 558  LVVKAGKPVIVKIPFQSHLPIQAAWRKDGAEVVGSSDREAQVDLGDGYTRLCLPSAGRKD 617

Query: 63   AGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT 122
             G Y+V L +  GSV    T+ +   P PP GP++V +  +    L W PP+ +GG  V 
Sbjct: 618  CGQYSVTLRSEGGSVQAELTLQVIDKPDPPQGPMEVQDCHRAGVCLRWRPPRDNGGRTVE 677

Query: 123  HYVVERRDISMPHWICISTTCHD-TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI 181
             YVVERR      W+ +     D TTF    +  G++Y F V AV   G G  LE    +
Sbjct: 678  CYVVERRQAGRSTWLKVGEAPADSTTFTDAHVEPGRKYTFRVRAVTSEGAGEALESEEIL 737

Query: 182  KAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV 241
             A  P   P  P  P +       + L+W  P   G + I GY I++ + GS+ W  VN 
Sbjct: 738  VA--PEALPKAPSAPAILSASSQGITLTWTAPRGPGSAHILGYLIERRKKGSNTWTAVND 795

Query: 242  AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRN 301
                  +  + ++ +G QYEFRV A   +G   P   S++V  +DPM  + P ++   RN
Sbjct: 796  QPVPERRWTVADVRQGCQYEFRVTAVAPSGPGEPGPPSDAVFARDPM--RPPGLV---RN 850

Query: 302  ANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI--FAEGDTYTLIINSVYGVD 359
                   N             T+SW     +    A+ ++      D+   +   V  V 
Sbjct: 851  LQVTDRSNTSI----------TLSWAGPDTQEGDEAQGYVVELCSSDSLQWLPCHVGTVP 900

Query: 360  ADEYVCR-------------AVNKGGVKSTKA------ELIIMTAPKFNVPPRFRDTAYF 400
               Y  +             AVN+GG     A       + +   PKF V    +D    
Sbjct: 901  VTTYTAKGLRPGEGYFVRVTAVNEGGQSQPSALDTLVQAMPVTVCPKFLVDSSTKDLLTV 960

Query: 401  DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
              G+ V V + F   P P++TW +D   +         T +    L I  A   D+  Y 
Sbjct: 961  KVGDTVRVPVSFEAMPMPEVTWLKDGLPLPK--RSVTVTKDGLTQLLIPVAGLSDSGLYT 1018

Query: 461  VVAENDLGMDSA-IVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNI-TNYIV 518
            VV     G + A   +I+++  P  P    +++    ++   W  P  D   ++  +Y V
Sbjct: 1019 VVLRTLQGKEVAHSFRIRVAACPQAPGPIHLQENVPGTVTAEWE-PSPDEAQDVPLHYAV 1077

Query: 519  EKREHPMSSW----IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
              R      W     R+   RFT +   G+ PGH+Y FRV A+N  G S PS TS
Sbjct: 1078 FTRSSAHGPWHEAADRIHTNRFTLL---GILPGHEYHFRVVAKNELGASKPSDTS 1129

Homo sapiens (taxid: 9606)

>sp|Q00872|MYPC1_HUMAN Myosin-binding protein C, slow-type OS=Homo sapiens GN=MYBPC1 PE=1 SV=2

 Score =  176 bits (447), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 162/577 (28%), Positives = 247/577 (42%), Gaps = 58/577 (10%)

Query: 30   TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
            TKNG  VQ  DR K         + I     ED GDY    +  + +V+    +++   P
Sbjct: 465  TKNGLPVQESDRLKVVHKGRIHKLVIANALTEDEGDYV--FAPDAYNVTLPAKVHVIDPP 522

Query: 90   GPPIGPLD----VSEITKHTCTLHWN-----PPK--YDGGLKVTHYVVER-RDISMPHWI 137
               +  LD    V+ I  +   L        PPK  +  G K       R R  S P   
Sbjct: 523  KIILDGLDADNTVTVIAGNKLRLEIPISGEPPPKAMWSRGDKAIMEGSGRIRTESYPD-- 580

Query: 138  CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPV 197
                    +T ++         ++H+   NE G     E    IK K   D P PP  P 
Sbjct: 581  -------SSTLVIDIAERDDSGVYHINLKNEAG-----EAHASIKVKV-VDFPDPPVAPT 627

Query: 198  VTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEG 257
            VT+VG D+  ++W+ P  DGGS I GY+I++ +  S  W R+N  +C  +      +IEG
Sbjct: 628  VTEVGDDWCIMNWEPPAYDGGSPILGYFIERKKKQSSRWMRLNFDLCKETTFEPKKMIEG 687

Query: 258  RQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV---------------PLRNA 302
              YE R++A N  G+S PS  S       P+A  +P  ++               P  + 
Sbjct: 688  VAYEVRIFAVNAIGISKPSMPSRPFV---PLAVTSPPTLLTVDSVTDTTVTMRWRPPDHI 744

Query: 303  NAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADE 362
             A        +    G      S   G       A   I A  D       ++ G+  D 
Sbjct: 745  GAAGLDGYVLEYCFEGSTSAKQSDENGEAAYDLPAEDWIVANKDLIDKTKFTITGLPTDA 804

Query: 363  YV---CRAVNKGGVKSTK--AELI----IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFT 413
             +    +AVN  G    K  ++ I    I+  PK  +P   + T     GE V + IPF 
Sbjct: 805  KIFVRVKAVNAAGASEPKYYSQPILVKEIIEPPKIRIPRHLKQTYIRRVGEAVNLVIPFQ 864

Query: 414  GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAI 473
            G P+P++TW +D   I+     ++  SE   I+ IR A    +  Y +  + D  +++A 
Sbjct: 865  GKPRPELTWKKDGAEIDKN-QINIRNSETDTIIFIRKAERSHSGKYDLQVKVDKFVETAS 923

Query: 474  VKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-G 532
            + IQI DRP PPQ   +ED+  +++AL W  P  DG + IT Y ++K +     W  V  
Sbjct: 924  IDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIE 983

Query: 533  NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
            +   T+  IT L  G++Y FRV++EN+ G S+ +T +
Sbjct: 984  HYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMT 1020

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Homo sapiens (taxid: 9606)

>sp|Q90688|MYPC3_CHICK Myosin-binding protein C, cardiac-type OS=Gallus gallus GN=MYBPC3 PE=1 SV=3

 Score =  162 bits (410), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 192/430 (44%), Gaps = 19/430 (4%)

Query: 148  FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVN 207
            FI++G  +  E ++ V+  N  G     E    I  K   D P PP  P ++ +G D+  
Sbjct: 734  FIIEGAEKEDEGVYRVIVKNPVG-----EDKADITVKV-IDVPDPPEAPKISNIGEDYCT 787

Query: 208  LSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ 267
            + W  P  DGG  + GY +++ +  S  W R+N  +          +IEG  YE R+YA 
Sbjct: 788  VQWQPPTYDGGQPVLGYILERKKKKSYRWMRLNFDLLKELTYEAKRMIEGVVYEMRIYAV 847

Query: 268  NEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWL 327
            N  G+S PS AS       P +      +  + +           +    G     + + 
Sbjct: 848  NSIGMSRPSPASQPFMPIAPPSEPTHFTVEDVSDTTVALKWRPPERIGAGGLDGYIVEYC 907

Query: 328  K-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG------VKSTKAEL 380
            K GS E TP+    +    +  + +I  +   D   +  +A+N  G      +K      
Sbjct: 908  KDGSAEWTPA----LPGLTERTSALIKDLVTGDKLYFRVKAINLAGESGAAIIKEPVTVQ 963

Query: 381  IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS 440
             IM  PK  VP   R T     GE + + IPF G P+PKI+W +D + ++S     +  S
Sbjct: 964  EIMQRPKICVPRHLRQTLVKKVGETINIMIPFQGKPRPKISWMKDGQTLDS-KDVGIRNS 1022

Query: 441  ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLAL 500
                IL IR A    +  Y V  + +   D+  + IQI D+P PPQ   + D+   ++AL
Sbjct: 1023 STDTILFIRKAELHHSGAYEVTLQIENMTDTVAITIQIIDKPGPPQNIKLADVWGFNVAL 1082

Query: 501  VWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENV 559
             W  P  DG + I  Y V+K +     W  V  + R T   ++ L  G++Y FRV++EN+
Sbjct: 1083 EWTPPQDDGNAQILGYTVQKADKKTMEWYTVYDHYRRTNCVVSDLIMGNEYFFRVFSENL 1142

Query: 560  YGRSDPSTTS 569
             G S+ + T+
Sbjct: 1143 CGLSETAATT 1152

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle A bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. May be involved in the early phase of myofibrillogenesis.

Gallus gallus (taxid: 9031)

>sp|Q14324|MYPC2_HUMAN Myosin-binding protein C, fast-type OS=Homo sapiens GN=MYBPC2 PE=1 SV=2

 Score =  149 bits (376), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 137/561 (24%), Positives = 231/561 (41%), Gaps = 44/561 (7%)

Query: 31   KNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT---INITG 87
            KNG  V+   R   + +  +  + I ++R ED GDYT      + S+S       I +  
Sbjct: 473  KNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEY 532

Query: 88   LPG--PPIGPLDVSEITKHTC-------------TLHWNPPKYDGGLKVTHYVVERRDIS 132
            +P   PP   LD S  T                 ++   PP     LK           +
Sbjct: 533  VPKQEPPKIHLDCSGKTSENAIVVVAGNKLRLDVSITGEPPPVATWLKGDEVFTTTEGRT 592

Query: 133  MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
                  I      ++F+++      E  + +   N  G     E +  I  +   D P P
Sbjct: 593  R-----IEKRVDCSSFVIESAQREDEGRYTIKVTNPVG-----EDVASIFLQV-VDVPDP 641

Query: 193  PGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIP 252
            P    +T VG D+  L W+ P+ DGG  + GY +++ + GS  W ++N  +   +     
Sbjct: 642  PEAVRITSVGEDWAILVWEPPMYDGGKPVTGYLVERKKKGSQRWMKLNFEVFTETTYEST 701

Query: 253  NLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQF 312
             +IEG  YE RV+A N  G+S PS  +       P +     I+  + +           
Sbjct: 702  KMIEGILYEMRVFAVNAIGVSQPSMNTKPFMPIAPTSEPLHLIVEDVTDTTTTLKWRPPN 761

Query: 313  QCTITGCPKPTISW-LKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371
            +    G     + + L+GS E  P+    +   G T   +      +    +    VN  
Sbjct: 762  RIGAGGIDGYLVEYCLEGSEEWVPANTEPVERCGFTVKNLPTGARIL----FRVVGVNIA 817

Query: 372  GVKSTKAELI-------IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 424
            G +S  A L        I   PK  +P   R T     GE + + +PF G P+P++ W +
Sbjct: 818  G-RSEPATLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 876

Query: 425  DNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDP 484
                +++    HV TS+   +  +R A+  D+  Y +  + +   D+A ++I++ ++  P
Sbjct: 877  GGAPLDTS-RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAGP 935

Query: 485  PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMAITG 543
            P    V+++   +  + W+AP  DG S I  Y V+K +     W  V    R T+  ++ 
Sbjct: 936  PINVMVKEVWGTNALVEWQAPKDDGNSEIMGYFVQKADKKTMEWFNVYERNRHTSCTVSD 995

Query: 544  LSPGHQYEFRVYAENVYGRSD 564
            L  G++Y FRVY EN+ G SD
Sbjct: 996  LIVGNEYYFRVYTENICGLSD 1016

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Homo sapiens (taxid: 9606)

>sp|P16419|MYPC2_CHICK Myosin-binding protein C, fast-type OS=Gallus gallus GN=MYBPC2 PE=1 SV=3

 Score =  148 bits (373), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 144/563 (25%), Positives = 238/563 (42%), Gaps = 39/563 (6%)

Query: 31   KNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT---INITG 87
            +NG  V+   R   +    +  + I ++R ED GDYT      + S+S       I +  
Sbjct: 465  RNGVEVKPSKRIHISHNGRFHKLVIDDVRPEDEGDYTFIPDGYALSLSAKLNFLEIKVEY 524

Query: 88   LPG--PPIGPLDVS-EITKHT-CTLHWNPPKYD---GGLKVTHYVVERRD---ISMPHWI 137
            +P   PP   LD S +  ++T   +  N  + D    G        +R D    +    +
Sbjct: 525  VPKQEPPKIHLDCSGKAAENTIVVVAGNKVRLDVPISGEPAPTVTWKRGDQLFTATEGRV 584

Query: 138  CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPV 197
             I +    ++F+++      E  + +   N  G       +  +      D P PP    
Sbjct: 585  HIDSQADLSSFVIESAERSDEGRYCITVTNPVGEDSATLHVRVV------DVPDPPQSVR 638

Query: 198  VTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEG 257
            VT VG D+  LSW+ P  DGG  I GY +++ + GS  W ++N  +   +      +IEG
Sbjct: 639  VTSVGEDWAVLSWEAPPFDGGMPITGYLMERKKKGSMRWMKLNFEVFPDTTYESTKMIEG 698

Query: 258  RQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT 317
              YE RV+A N  G+S PS  +       P +     ++  + +  A        +    
Sbjct: 699  VFYEMRVFAVNAIGVSQPSLNTQPFMPIAPTSEPTHVVLEDVTDTTATIKWRPPERIGAG 758

Query: 318  GCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADE---YVCRAVNKGGV 373
            G     + W + GS E   +    +   G T         G+   E   +   +VN  G 
Sbjct: 759  GVDGYLVEWCREGSNEWVAANTELVERCGLT-------ARGLPTGERLLFRVISVNMAGK 811

Query: 374  K--STKAELI----IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
               +T A+ +    I+  PK  +P   R T     GE V + IPF G P+P++TW R+  
Sbjct: 812  SPPATMAQPVTIREIVERPKIRLPRHLRQTYIRRVGEQVNLVIPFQGKPRPQVTWSREGG 871

Query: 428  VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
             + +       TS+  ++  IR A+   +  Y +    D   D A +++++ +RP PPQ 
Sbjct: 872  ALPA--EVQTRTSDVDSVFFIRSAARPLSGNYEMRVRIDNMEDCATLRLRVVERPGPPQA 929

Query: 488  PTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMAITGLSP 546
              V ++   +  L W  P  DG + I+ Y V+K +     W  V  ++R T   ++ L  
Sbjct: 930  VRVMEVWGSNALLQWEPPKDDGNAEISGYTVQKADTRTMEWFTVLEHSRPTRCTVSELVM 989

Query: 547  GHQYEFRVYAENVYGRSDPSTTS 569
            G++Y FRVY+ENV G S    TS
Sbjct: 990  GNEYRFRVYSENVCGTSQEPATS 1012

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Gallus gallus (taxid: 9031)

>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3

 Score =  147 bits (372), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 173/387 (44%), Gaps = 9/387 (2%)

Query: 189   KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
             KP+ PG P   ++  D + L W  P DDG S I  Y ++  +V  + W    +     + 
Sbjct: 17371 KPTAPGTPQPLEIMHDSITLYWKAPEDDGKSEIIEYILEYQDVKEEKW--TEIRKIKDTT 17428

Query: 249   INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNH 308
               I  L    +Y FR  A NE G S PS  S  +++   +  KAP +  PL++  +  + 
Sbjct: 17429 YTISKLKIDTEYVFRSIAVNEVGPSPPSPLSPPIRLVPKVETKAPSVQEPLQDVVSELDK 17488

Query: 309   NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 368
                  C   G P+P ++W K  +     +   I  E       I          Y C A 
Sbjct: 17489 EVTLSCVFGGIPEPKVTWKKNGQVFESRS---IRYENRVAKYTIEKTTIETEATYTCVAT 17545

Query: 369   NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEV 428
             N+ G   T   L +   P   V  ++  T     G  + +     GYP+P +TW+++   
Sbjct: 17546 NEKGSAETSCRLKLQQKPVLEVEDKYL-TQKLRTGSILTIPATVRGYPQPTVTWHKETIE 17604

Query: 429   IESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
              ++     +ET+E  +  T++  +   +  Y+V A N+ G       +Q+ D+P  PQ  
Sbjct: 17605 QKTTKSVTIETTETTSTYTVKKVTREQSGKYKVTATNESGTTYVECTVQVIDKPSRPQSL 17664

Query: 489   TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG--NTRFTTMAITGLSP 546
              ++DI  DS+ L W  P+ DGG +I  Y +EK +   + W++V   N    + A+  LS 
Sbjct: 17665 EIKDIKKDSIVLEWTPPVDDGGLDIEKYTLEKCDVQNNVWMKVSDFNKDIKSYAVQKLSM 17724

Query: 547   GHQYEFRVYAENVYGRSDPSTTSDLIT 573
               QY FRV A N  G S+P T SD +T
Sbjct: 17725 NAQYMFRVVAANPIGESEP-TESDPVT 17750

Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
328710146	8645	PREDICTED: twitchin-like [Acyrthosiphon	0.978	0.066	0.744	0.0
383852204	8627	PREDICTED: twitchin-like [Megachile rotu	0.901	0.061	0.711	0.0
340710318	8715	PREDICTED: twitchin-like [Bombus terrest	0.928	0.062	0.707	0.0
350413804	8700	PREDICTED: twitchin-like [Bombus impatie	0.901	0.061	0.707	0.0
307200525	5935	Titin [Harpegnathos saltator]	0.893	0.088	0.718	0.0
189233817	8838	PREDICTED: similar to CG32019-PA [Tribol	0.952	0.063	0.717	0.0
270014673	8877	hypothetical protein TcasGA2_TC004721 [T	0.952	0.063	0.717	0.0
380026625	8679	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.898	0.061	0.703	0.0
242010244	8829	titin, putative [Pediculus humanus corpo	0.976	0.065	0.704	0.0
328789682	8619	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.898	0.061	0.692	0.0

>gi|328710146|ref|XP_003244179.1| PREDICTED: twitchin-like [Acyrthosiphon pisum]

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/579 (74%), Positives = 493/579 (85%), Gaps = 1/579 (0%)

Query: 1    MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
            MPN++ +PEG+N+K+KIFY+GD   ++ L KNG  +   D FKFT+ DDY+IIF+KE +K
Sbjct: 7064 MPNSINVPEGENSKIKIFYSGDSLEDIVLEKNGTTIPQSDHFKFTIFDDYVIIFLKEAKK 7123

Query: 61   EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
             DA DYTV L N SGS SG+FTINI+G PGPPIGPL VSEITKHTC+L WNPPKYDGGLK
Sbjct: 7124 NDASDYTVTLRNPSGSTSGSFTINISGYPGPPIGPLGVSEITKHTCSLSWNPPKYDGGLK 7183

Query: 121  VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
            +THY+VERRDI+  HWICISTTC DT FIVQGLTEG EY+F ++AVN+NG+ PPLEG+NP
Sbjct: 7184 ITHYIVERRDITSNHWICISTTCKDTHFIVQGLTEGNEYVFRIIAVNDNGLSPPLEGVNP 7243

Query: 181  IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
            IKAKSPYDKPSPPGIP VT++GGDFVNLSW+KP+DDGGSRIQGY IDK E+ SD WQRVN
Sbjct: 7244 IKAKSPYDKPSPPGIPTVTEIGGDFVNLSWEKPIDDGGSRIQGYLIDKREIDSDTWQRVN 7303

Query: 241  VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
             AIC  +QINI NLIEGRQY FRV+AQNEAGLSLPS ASN+V IKDP+ A+ PEII PL 
Sbjct: 7304 AAICVTTQINISNLIEGRQYVFRVFAQNEAGLSLPSQASNTVTIKDPLTAQPPEIIKPLG 7363

Query: 301  NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
               AIQN NAQFQC ITG PKPTI+W KG+REITPSARHH+F EGD++TLIIN VYG D+
Sbjct: 7364 RVQAIQNQNAQFQCVITGVPKPTITWYKGAREITPSARHHMFNEGDSHTLIINGVYGADS 7423

Query: 361  DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
            DEYVCRA NKGG+KST+ EL IMT PK NVPPRFRDTA+FDKGENVV+KIPFTG+PKPKI
Sbjct: 7424 DEYVCRASNKGGIKSTRGELFIMTPPKLNVPPRFRDTAFFDKGENVVIKIPFTGFPKPKI 7483

Query: 421  TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
             WYR+NEVIESG HF VE SERHAILTIRD S  D++PYRV+AENDLG+DSAI+KIQISD
Sbjct: 7484 KWYRENEVIESGSHFAVEVSERHAILTIRDVSKYDSSPYRVLAENDLGVDSAIIKIQISD 7543

Query: 481  RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
             PDPP   ++EDIG DSL L W AP WDGGSNITNY++EKRE PMSSWIRVGNTRFT+ A
Sbjct: 7544 HPDPPFSLSIEDIGQDSLILNWNAPTWDGGSNITNYLIEKREIPMSSWIRVGNTRFTSTA 7603

Query: 541  ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELL 579
            +TGLSPGH+YEFRVYAENVYGRS PS  S ++ T  ELL
Sbjct: 7604 VTGLSPGHEYEFRVYAENVYGRSKPSEVSPVVKT-KELL 7641

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852204|ref|XP_003701618.1| PREDICTED: twitchin-like [Megachile rotundata]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/576 (71%), Positives = 486/576 (84%)

Query: 1    MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
            MP+ LY+ EGDNTK+KI+Y+GDQPM+V+L K+G  V      K+TV D+Y+IIFIK+I+K
Sbjct: 7038 MPDDLYLAEGDNTKIKIYYSGDQPMDVTLKKDGHKVVETSHIKYTVFDEYLIIFIKDIQK 7097

Query: 61   EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
            +DAG Y +++SN SGSVSG+F +NITGLPGPP GPLDV++I KHTCTL W+PPK+DGGL+
Sbjct: 7098 DDAGVYDLSISNDSGSVSGSFNVNITGLPGPPTGPLDVTDINKHTCTLSWHPPKFDGGLR 7157

Query: 121  VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
            VTHYVVERRD+S  HWI +S+ C D +F+VQGLTEGQEYLF VMAVN+NGMGPPLEG NP
Sbjct: 7158 VTHYVVERRDVSHTHWIIVSSFCKDISFMVQGLTEGQEYLFRVMAVNDNGMGPPLEGTNP 7217

Query: 181  IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
            IKAK+P+D P PPG P VT+VGGDFVNLSW+KP  DGGS+IQGYWIDK EVGS  WQRVN
Sbjct: 7218 IKAKAPFDPPGPPGTPKVTEVGGDFVNLSWEKPETDGGSKIQGYWIDKREVGSQTWQRVN 7277

Query: 241  VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
            VAIC P+QIN+ NL+EGRQYEFRV+AQN AGL   S AS SV++ DP AAKAPE+I PL 
Sbjct: 7278 VAICLPTQINVVNLVEGRQYEFRVFAQNAAGLGPESKASTSVKVTDPQAAKAPEVIQPLH 7337

Query: 301  NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
              N +Q HNAQFQC I G PKPTI+W KG+REI   +R++I++EGDT+ LII+ V+G DA
Sbjct: 7338 KVNCVQYHNAQFQCKIVGIPKPTITWFKGAREIVSGSRYNIYSEGDTHYLIIHDVFGEDA 7397

Query: 361  DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
            DEY CRAVNK GVKSTK EL+I T PK NVPPRFRDTA+FDKG NVV+KIPFTGYPKPKI
Sbjct: 7398 DEYFCRAVNKCGVKSTKGELLIKTPPKLNVPPRFRDTAFFDKGVNVVIKIPFTGYPKPKI 7457

Query: 421  TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
            TW R+ E IESGGH+ VE  ERHA+LTI D S +D+ PYR+ AENDLG D+AI+KIQISD
Sbjct: 7458 TWVREGETIESGGHYTVEVKERHAVLTIIDGSRIDSGPYRITAENDLGQDTAIIKIQISD 7517

Query: 481  RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
            RPDPP+FP V+++GHDSLAL W+ P+WDGGSNITNY+VEKREHPM+SWIRVGNTRF TMA
Sbjct: 7518 RPDPPRFPQVDNVGHDSLALSWKPPVWDGGSNITNYLVEKREHPMTSWIRVGNTRFCTMA 7577

Query: 541  ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
            +TGLSPGHQY+FRV AEN+YGRSDPS  + LITT G
Sbjct: 7578 VTGLSPGHQYDFRVCAENIYGRSDPSEVTPLITTKG 7613

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710318|ref|XP_003393739.1| PREDICTED: twitchin-like [Bombus terrestris]

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/578 (70%), Positives = 486/578 (84%)

Query: 1    MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
            MP+ LY+ E DNTK+KI+Y+GDQPM+++L K+GR V      K+TV D+Y+IIFIK+I+K
Sbjct: 7137 MPDVLYLAENDNTKIKIYYSGDQPMDITLKKDGRKVVETSHIKYTVFDEYLIIFIKDIQK 7196

Query: 61   EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
            +DAG Y +++SN SGSVSG+F + ITGLPGPP  PLDV++I KHTCTL W PPKYDGGL+
Sbjct: 7197 DDAGVYDLSISNDSGSVSGSFNVYITGLPGPPTEPLDVTDIDKHTCTLTWRPPKYDGGLR 7256

Query: 121  VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
            VTHYVVERRD+S  HWI +S+ C D +F+VQGLTEGQEYLF VMAVN+NGMGPPLEG NP
Sbjct: 7257 VTHYVVERRDVSHTHWIIVSSFCKDCSFMVQGLTEGQEYLFRVMAVNDNGMGPPLEGTNP 7316

Query: 181  IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
            IKAK+P+D P PPG P VT+VGGDFVNLSW+KP  DGGS+IQGYWIDK EVGS AWQRVN
Sbjct: 7317 IKAKAPFDPPGPPGTPKVTEVGGDFVNLSWEKPESDGGSKIQGYWIDKREVGSQAWQRVN 7376

Query: 241  VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
            V IC P+QINI NLIEGRQYEFRV+AQN AGL   S AS SV+I DP AAKAPE+I+PL 
Sbjct: 7377 VVICLPTQINISNLIEGRQYEFRVFAQNAAGLGPESKASTSVKITDPQAAKAPEVILPLH 7436

Query: 301  NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
              + +QNHNA FQC I G PKPTI+W KG+REI   +R++I++EGDT+ LII+ V+G DA
Sbjct: 7437 KVSCVQNHNAHFQCKIVGIPKPTITWFKGAREIVSGSRYNIYSEGDTHNLIIHDVFGEDA 7496

Query: 361  DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
            DEYVCRAVNK GVKSTK EL+I T PK NVPPRFRDTA+FDKG NVV+KIPFTGYPKPKI
Sbjct: 7497 DEYVCRAVNKCGVKSTKGELLIKTPPKLNVPPRFRDTAFFDKGVNVVIKIPFTGYPKPKI 7556

Query: 421  TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
            TW R+ E IESGGH+ VE  ERHA+LTI D S +D+ PYR+ AEND+G D+AI+KIQISD
Sbjct: 7557 TWVREGETIESGGHYTVEVKERHAVLTIIDGSRIDSGPYRITAENDMGQDTAIIKIQISD 7616

Query: 481  RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
            RPDPP+FP V++IGHDSLAL W+ P+WDGGSNITNY+VEKREHPM+SWIRVGNTRF +MA
Sbjct: 7617 RPDPPRFPQVDNIGHDSLALTWKPPVWDGGSNITNYLVEKREHPMTSWIRVGNTRFCSMA 7676

Query: 541  ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGEL 578
            +TGLSPGHQY+FR+ AEN+YGRSDPS  + LITT G +
Sbjct: 7677 VTGLSPGHQYDFRICAENIYGRSDPSEVTPLITTKGTI 7714

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413804|ref|XP_003490119.1| PREDICTED: twitchin-like [Bombus impatiens]

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/578 (70%), Positives = 486/578 (84%)

Query: 1    MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
            MP+ LY+ E DNTK+KI+Y+GDQPM+++L K+GR V      K+TV D+Y+IIFIK+I+K
Sbjct: 7115 MPDTLYLAENDNTKIKIYYSGDQPMDITLKKDGRKVVETSHIKYTVFDEYLIIFIKDIQK 7174

Query: 61   EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
            +DAG Y +++SN SGSVSG+F + ITGLPGPP  PLDV++I KHTCTL W PPKYDGGL+
Sbjct: 7175 DDAGVYDLSISNDSGSVSGSFNVYITGLPGPPTEPLDVTDIDKHTCTLTWRPPKYDGGLR 7234

Query: 121  VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
            VTHYVVERRD+S  HWI +S+ C D +F+VQGLTEGQEYLF VMAVN+NGMGPPLEG NP
Sbjct: 7235 VTHYVVERRDVSHTHWIIVSSFCKDCSFMVQGLTEGQEYLFRVMAVNDNGMGPPLEGTNP 7294

Query: 181  IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
            IKAK+P+D P PPG P VT+VGGDFVNLSW+KP  DGGS+IQGYWIDK EVGS AWQRVN
Sbjct: 7295 IKAKAPFDPPGPPGTPKVTEVGGDFVNLSWEKPESDGGSKIQGYWIDKREVGSQAWQRVN 7354

Query: 241  VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
            V IC P+QINI NLIEGRQYEFRV+AQN AGL   S AS SV+I DP AAKAPE+I+PL 
Sbjct: 7355 VVICLPTQINISNLIEGRQYEFRVFAQNAAGLGPESKASTSVKITDPQAAKAPEVILPLH 7414

Query: 301  NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
              + +QNHNA FQC I G PKPTI+W KG+REI   +R++I++EGDT+ LII+ V+G DA
Sbjct: 7415 KVSCVQNHNAHFQCKIVGIPKPTITWFKGAREIVSGSRYNIYSEGDTHNLIIHDVFGEDA 7474

Query: 361  DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
            DEYVCRAVNK GVKSTK EL+I T PK NVPPRFRDTA+FDKG NVV+KIPFTGYPKPKI
Sbjct: 7475 DEYVCRAVNKCGVKSTKGELLIKTPPKLNVPPRFRDTAFFDKGVNVVIKIPFTGYPKPKI 7534

Query: 421  TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
            TW R+ E IESGGH+ VE  ERHA+LTI D S +D+ PYR+ AEND+G D+AI+KIQISD
Sbjct: 7535 TWVREGETIESGGHYTVEVKERHAVLTIIDGSRIDSGPYRITAENDMGQDTAIIKIQISD 7594

Query: 481  RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
            RPDPP+FP V++IGHDSLAL W+ P+WDGGSNITNY+VEKREHPM+SWIRVGNTRF +MA
Sbjct: 7595 RPDPPRFPQVDNIGHDSLALTWKPPVWDGGSNITNYLVEKREHPMTSWIRVGNTRFCSMA 7654

Query: 541  ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGEL 578
            +TGLSPGHQY+FR+ AEN+YGRSDPS  + LITT G +
Sbjct: 7655 VTGLSPGHQYDFRICAENIYGRSDPSEVTPLITTKGTI 7692

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200525|gb|EFN80687.1| Titin [Harpegnathos saltator]

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/576 (71%), Positives = 486/576 (84%)

Query: 1    MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
            MP  LY+PE DNTK+KI+Y+GDQPMEV+L K+GR +      K+TV D+Y+IIFIK+I+K
Sbjct: 4344 MPGDLYLPERDNTKIKIYYSGDQPMEVTLKKDGRQIVETTHIKYTVFDEYLIIFIKDIQK 4403

Query: 61   EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
            +DAG Y +++SN SGSVS +F + ITGLPGPPIGPLDVS+I KHTCTL W+PPKYDGGLK
Sbjct: 4404 DDAGTYDLSISNDSGSVSASFNVYITGLPGPPIGPLDVSDIDKHTCTLSWHPPKYDGGLK 4463

Query: 121  VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
            VTHYVVERRDIS  HWI +S+ C DTTF+VQGLTEGQEYLF VMAVN+NGMGPPLEG NP
Sbjct: 4464 VTHYVVERRDISHTHWIIVSSFCKDTTFVVQGLTEGQEYLFRVMAVNDNGMGPPLEGTNP 4523

Query: 181  IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
            IKAK+P+D P PPG P V +VGGDFVNLSW+KP  DGG++IQGYWIDK E+GS AWQRVN
Sbjct: 4524 IKAKAPFDPPGPPGTPKVIEVGGDFVNLSWEKPETDGGAKIQGYWIDKREIGSQAWQRVN 4583

Query: 241  VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
            V+IC P+QINI NLIEGRQYEFRV+AQN AG+S  S AS SV+I DP AAKAPEII PL+
Sbjct: 4584 VSICLPTQINISNLIEGRQYEFRVFAQNVAGISPESMASTSVKIVDPQAAKAPEIIQPLQ 4643

Query: 301  NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
              N +QNHNA FQC I G PKPTI+W KG+REI   +R++I++EG+ + LII+ V+G DA
Sbjct: 4644 KVNCVQNHNAHFQCKIIGTPKPTITWFKGAREIVSGSRYNIYSEGEVHNLIIHDVFGEDA 4703

Query: 361  DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
            DEY CRA NK GVKSTK EL I T PK NVPPRFRDTA+FDKG NV++KIPFTGYPKPKI
Sbjct: 4704 DEYFCRAANKCGVKSTKGELFIKTPPKLNVPPRFRDTAFFDKGVNVIIKIPFTGYPKPKI 4763

Query: 421  TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
            TW R+ EVIESGGH+ VE  ERHA+LTIRD S +D+ PYR+ AENDLG DSAI+KIQISD
Sbjct: 4764 TWVREGEVIESGGHYAVEVKERHAVLTIRDGSRMDSGPYRITAENDLGQDSAIIKIQISD 4823

Query: 481  RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
            RPDPP+FP V++IGHDSLA+ W+ P+WDGGSNITNY+VEKREHPMS+WIR G+TRF T+A
Sbjct: 4824 RPDPPRFPQVDNIGHDSLAVSWKPPVWDGGSNITNYVVEKREHPMSTWIRAGHTRFCTLA 4883

Query: 541  ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
            +TGLSPGHQY+FRV AENVYGRSDPS  + LITT G
Sbjct: 4884 VTGLSPGHQYDFRVCAENVYGRSDPSEVTPLITTKG 4919

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233817|ref|XP_971502.2| PREDICTED: similar to CG32019-PA [Tribolium castaneum]

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/574 (71%), Positives = 493/574 (85%)

Query: 1    MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
            +P  LY+PE DNTK+KI+Y+GDQP++V+LT+NG  +      K+T+ DDYIIIFIK I K
Sbjct: 7261 LPGDLYLPENDNTKIKIYYSGDQPLDVTLTRNGTKIDESAHIKYTIFDDYIIIFIKGINK 7320

Query: 61   EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
            +DAG+Y + + N SGS SG+FT+ ITGLPGPP GPL+ ++ITKHTCTL+W PP YDGGL+
Sbjct: 7321 DDAGNYNLTVKNDSGSASGSFTVYITGLPGPPTGPLETTDITKHTCTLNWKPPSYDGGLR 7380

Query: 121  VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
            +THYVVER+D++  HWI I++ C DT F VQGLTE QEY F VMAVN+NGMGPPLEG NP
Sbjct: 7381 ITHYVVERKDVTGLHWITINSHCKDTNFTVQGLTENQEYFFRVMAVNDNGMGPPLEGANP 7440

Query: 181  IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
            I+AK+P+D PSPPGIP VTQVGGDFVNL W++P +DGG+RIQGYWIDK E GS  WQRVN
Sbjct: 7441 IRAKAPFDPPSPPGIPKVTQVGGDFVNLEWERPENDGGARIQGYWIDKREAGSSTWQRVN 7500

Query: 241  VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
            V++C P+QINI NLIEGR+YEFRV+AQN AG+S PSSASNSV IKDPMAA  PEI+ PL+
Sbjct: 7501 VSLCLPTQINISNLIEGRKYEFRVFAQNVAGISEPSSASNSVVIKDPMAATPPEIVKPLK 7560

Query: 301  NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
            NAN IQNHNAQFQCTITG PKPTI+W KG+REI   +R++I++E D + LIIN V+G DA
Sbjct: 7561 NANCIQNHNAQFQCTITGVPKPTITWYKGAREICSGSRYNIYSEDDEHYLIINDVFGEDA 7620

Query: 361  DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
            DEYVCRAVNK GVKST+AEL+IMTAPK N+PPRFRDTAYFDKGENVV+KIPFTG+PKPKI
Sbjct: 7621 DEYVCRAVNKAGVKSTRAELVIMTAPKLNIPPRFRDTAYFDKGENVVIKIPFTGHPKPKI 7680

Query: 421  TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
            TW R+ EVIESGGH+HVE  +RHAILTIRD S +D+ PYR+ AEN+LG DSAI+KIQISD
Sbjct: 7681 TWVREGEVIESGGHYHVEVKDRHAILTIRDGSKLDSGPYRITAENNLGQDSAIIKIQISD 7740

Query: 481  RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
            RPDPP+FP V++IG DSLAL W+AP+WDGGSNITNY+VE+REHP+S+WIRVGNTR TTMA
Sbjct: 7741 RPDPPRFPVVDNIGTDSLALSWKAPVWDGGSNITNYLVERREHPLSTWIRVGNTRMTTMA 7800

Query: 541  ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            ++GL+PGHQYEFR+YAEN+YGRSD S  S LITT
Sbjct: 7801 VSGLTPGHQYEFRIYAENIYGRSDASEVSTLITT 7834

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014673|gb|EFA11121.1| hypothetical protein TcasGA2_TC004721 [Tribolium castaneum]

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/574 (71%), Positives = 493/574 (85%)

Query: 1    MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
            +P  LY+PE DNTK+KI+Y+GDQP++V+LT+NG  +      K+T+ DDYIIIFIK I K
Sbjct: 7300 LPGDLYLPENDNTKIKIYYSGDQPLDVTLTRNGTKIDESAHIKYTIFDDYIIIFIKGINK 7359

Query: 61   EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
            +DAG+Y + + N SGS SG+FT+ ITGLPGPP GPL+ ++ITKHTCTL+W PP YDGGL+
Sbjct: 7360 DDAGNYNLTVKNDSGSASGSFTVYITGLPGPPTGPLETTDITKHTCTLNWKPPSYDGGLR 7419

Query: 121  VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
            +THYVVER+D++  HWI I++ C DT F VQGLTE QEY F VMAVN+NGMGPPLEG NP
Sbjct: 7420 ITHYVVERKDVTGLHWITINSHCKDTNFTVQGLTENQEYFFRVMAVNDNGMGPPLEGANP 7479

Query: 181  IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
            I+AK+P+D PSPPGIP VTQVGGDFVNL W++P +DGG+RIQGYWIDK E GS  WQRVN
Sbjct: 7480 IRAKAPFDPPSPPGIPKVTQVGGDFVNLEWERPENDGGARIQGYWIDKREAGSSTWQRVN 7539

Query: 241  VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
            V++C P+QINI NLIEGR+YEFRV+AQN AG+S PSSASNSV IKDPMAA  PEI+ PL+
Sbjct: 7540 VSLCLPTQINISNLIEGRKYEFRVFAQNVAGISEPSSASNSVVIKDPMAATPPEIVKPLK 7599

Query: 301  NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
            NAN IQNHNAQFQCTITG PKPTI+W KG+REI   +R++I++E D + LIIN V+G DA
Sbjct: 7600 NANCIQNHNAQFQCTITGVPKPTITWYKGAREICSGSRYNIYSEDDEHYLIINDVFGEDA 7659

Query: 361  DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
            DEYVCRAVNK GVKST+AEL+IMTAPK N+PPRFRDTAYFDKGENVV+KIPFTG+PKPKI
Sbjct: 7660 DEYVCRAVNKAGVKSTRAELVIMTAPKLNIPPRFRDTAYFDKGENVVIKIPFTGHPKPKI 7719

Query: 421  TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
            TW R+ EVIESGGH+HVE  +RHAILTIRD S +D+ PYR+ AEN+LG DSAI+KIQISD
Sbjct: 7720 TWVREGEVIESGGHYHVEVKDRHAILTIRDGSKLDSGPYRITAENNLGQDSAIIKIQISD 7779

Query: 481  RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
            RPDPP+FP V++IG DSLAL W+AP+WDGGSNITNY+VE+REHP+S+WIRVGNTR TTMA
Sbjct: 7780 RPDPPRFPVVDNIGTDSLALSWKAPVWDGGSNITNYLVERREHPLSTWIRVGNTRMTTMA 7839

Query: 541  ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            ++GL+PGHQYEFR+YAEN+YGRSD S  S LITT
Sbjct: 7840 VSGLTPGHQYEFRIYAENIYGRSDASEVSTLITT 7873

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026625|ref|XP_003697047.1| PREDICTED: LOW QUALITY PROTEIN: twitchin-like [Apis florea]

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/576 (70%), Positives = 482/576 (83%)

Query: 1    MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
            MP+ LY+ E DNTK+KI+Y+GDQPM+V+L K+GR V      K+TV D+Y+IIFIK+I K
Sbjct: 7095 MPDVLYLAENDNTKIKIYYSGDQPMDVTLKKDGRKVVETSHIKYTVFDEYLIIFIKDIEK 7154

Query: 61   EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
            +DAG Y V+++N SGSVSG+F + ITGLPGPP  PL+V++I KHTCT+ W PPK+DGG++
Sbjct: 7155 DDAGVYDVSITNDSGSVSGSFNVYITGLPGPPSEPLEVTDIDKHTCTVSWRPPKFDGGVR 7214

Query: 121  VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
            VTHYVVERRD+S  HWI +S+ C D +F+VQGLTEGQEYLF VMAVN+NGMGPPLEG NP
Sbjct: 7215 VTHYVVERRDVSHTHWIIVSSFCKDCSFMVQGLTEGQEYLFRVMAVNDNGMGPPLEGTNP 7274

Query: 181  IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
            IKAK+P+D P PPG P VT+VGGDFVNLSW+KP  DGGS+IQGYWIDK EVGS AW RVN
Sbjct: 7275 IKAKAPFDPPGPPGTPKVTEVGGDFVNLSWEKPESDGGSKIQGYWIDKREVGSQAWVRVN 7334

Query: 241  VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
            V IC P+QINI NLIEGRQYEFRV+AQN AGL   S AS SV+I DP AAKAPE+I PL 
Sbjct: 7335 VIICLPTQINITNLIEGRQYEFRVFAQNAAGLGPESKASTSVKIADPQAAKAPEVIQPLH 7394

Query: 301  NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
              + +QNHNAQFQC I G PKPTI+W KG+REI   +R++I++EGD + LII+ V+G DA
Sbjct: 7395 KVSCVQNHNAQFQCKIIGIPKPTITWFKGAREIVSGSRYNIYSEGDVHNLIIHDVFGEDA 7454

Query: 361  DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
            DEY CRAVNK GVKSTK EL+I T PK NVPPRFRDTA+FDKG NVV+KIPFTGYPKPKI
Sbjct: 7455 DEYFCRAVNKCGVKSTKGELLIKTPPKLNVPPRFRDTAFFDKGVNVVIKIPFTGYPKPKI 7514

Query: 421  TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
            TW R+ E+IESGGH+ VE  ERHA+LTI D + +D+ PYR+ AENDLG DSAI+KIQISD
Sbjct: 7515 TWVREGELIESGGHYTVEVKERHAVLTIIDGNRIDSXPYRITAENDLGQDSAIIKIQISD 7574

Query: 481  RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
            RPDPP+FP V+++GHDSLAL W+ P+WDGGSNITNY+VEKREHPM+SWIRVGNTRF +MA
Sbjct: 7575 RPDPPRFPQVDNVGHDSLALTWKPPVWDGGSNITNYLVEKREHPMTSWIRVGNTRFCSMA 7634

Query: 541  ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
            +TGLSPGHQY+FRV AEN+YGRSDPS  + LITT G
Sbjct: 7635 VTGLSPGHQYDFRVCAENIYGRSDPSEVTPLITTKG 7670

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010244|ref|XP_002425880.1| titin, putative [Pediculus humanus corporis] gi|212509846|gb|EEB13142.1| titin, putative [Pediculus humanus corporis]

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/578 (70%), Positives = 480/578 (83%), Gaps = 1/578 (0%)

Query: 1    MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
            +P  LY+PE +N K+KIFY+GDQPM V+L K GR ++   R + T+ D+Y IIFIKE+ K
Sbjct: 7248 LPGDLYLPEKENAKIKIFYSGDQPMTVTLKKGGRDIEDSSRIRCTIFDEYAIIFIKEVEK 7307

Query: 61   EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
            +D G+Y V   N SG  SG+FT+  TGLPGPP GPL V++ITKHTCTL+W PP ++GGLK
Sbjct: 7308 DDCGNYVVECKNDSGFASGSFTVTTTGLPGPPQGPLGVTDITKHTCTLNWLPPLHNGGLK 7367

Query: 121  VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
            +THYVVER+DIS  HW+ + + C DTTF VQGLTEGQEYLF VMAVNENGMG PLEG NP
Sbjct: 7368 ITHYVVERKDISHNHWVVVYSYCKDTTFTVQGLTEGQEYLFRVMAVNENGMGLPLEGKNP 7427

Query: 181  IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
            IKAK+P+D PS PGIP + +VGG+FVNLSWDKP  DGGSRIQGYWIDK E GS+ WQRVN
Sbjct: 7428 IKAKAPFDAPSAPGIPSIVEVGGNFVNLSWDKPESDGGSRIQGYWIDKREAGSETWQRVN 7487

Query: 241  VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
            +A+C+P+QINI NLIEGRQYEFRV+AQNE GLS PS+ S SV+I DP AAK+PEI+ PLR
Sbjct: 7488 MALCSPNQINISNLIEGRQYEFRVFAQNEGGLSAPSANSTSVKIVDPKAAKSPEIVKPLR 7547

Query: 301  NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
            N NAIQNHNAQFQCTI+G PKPT++W KG+REIT SAR H+FAEG+TYTLIIN VYG DA
Sbjct: 7548 NVNAIQNHNAQFQCTISGTPKPTVTWYKGAREITHSARFHMFAEGETYTLIINDVYGEDA 7607

Query: 361  DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
            DEYVCRAVNK GVKST+AEL IMT PK NVPPRFRDTA+FDKGENV++KIPF GYPKPKI
Sbjct: 7608 DEYVCRAVNKAGVKSTRAELFIMTPPKINVPPRFRDTAFFDKGENVIIKIPFIGYPKPKI 7667

Query: 421  TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
            TW RD E+IESG HF +ET+ERHAILTIRD + +D+  YR+VAENDLG DS I+ IQISD
Sbjct: 7668 TWSRDGEIIESGSHFAIETTERHAILTIRDGNKIDSGSYRLVAENDLGQDSVIINIQISD 7727

Query: 481  RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
            RPDPPQ P  + IG DSLAL W  P WDGGSNITNY +EKRE P+SSWIRVG+TRF TMA
Sbjct: 7728 RPDPPQRPICDSIGVDSLALSWFPPEWDGGSNITNYSIEKRELPLSSWIRVGSTRFNTMA 7787

Query: 541  ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGEL 578
            +TGL+P H+YEFRVYAEN+YG+SDP+ +S ++ T G +
Sbjct: 7788 VTGLAPNHEYEFRVYAENIYGKSDPAVSS-VVKTKGTI 7824

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789682|ref|XP_003251305.1| PREDICTED: LOW QUALITY PROTEIN: twitchin [Apis mellifera]

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/576 (69%), Positives = 479/576 (83%)

Query: 1    MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
            MP+ LY+ E DNTK+KI+Y+GDQPM+V+L K+GR V      K+TV D+Y+IIFIK+I K
Sbjct: 7033 MPDILYLAENDNTKIKIYYSGDQPMDVTLKKDGRKVVETSHIKYTVFDEYLIIFIKDIEK 7092

Query: 61   EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
            +DAG Y V+++N SGSVSG+F + ITGLPGPP  PL+V+++ KHTCT+ W PPK+DGG++
Sbjct: 7093 DDAGVYDVSITNDSGSVSGSFNVCITGLPGPPSEPLEVTDVNKHTCTVSWRPPKFDGGVR 7152

Query: 121  VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
            VTHYVVERRD+S  HWI  S+ C D +F+VQGLTEGQEYLF VMAVN+NGMGPPLEG NP
Sbjct: 7153 VTHYVVERRDVSHAHWIIASSFCKDCSFVVQGLTEGQEYLFRVMAVNDNGMGPPLEGTNP 7212

Query: 181  IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
            +KAK+P+D P PPG P VT+VGGDFVNLSW+KP  DGGS+IQGYWIDK EVGS AW RVN
Sbjct: 7213 VKAKAPFDPPGPPGTPKVTEVGGDFVNLSWEKPETDGGSKIQGYWIDKREVGSQAWVRVN 7272

Query: 241  VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
            V IC P+QIN+ NLIEGRQYEFRV+AQN AGL   S AS SV+I DP AAK PE+I PL 
Sbjct: 7273 VIICLPTQINVTNLIEGRQYEFRVFAQNAAGLGPESKASTSVKIADPQAAKPPEVIQPLH 7332

Query: 301  NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
              + +QNHNA FQC I G P+PTI+W KG+REI   +R++I++EGD + LII+ V+G DA
Sbjct: 7333 KVSCVQNHNAHFQCKIVGVPRPTITWFKGAREIVTGSRYNIYSEGDVHNLIIHDVFGEDA 7392

Query: 361  DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
            DEY CRAVNK GVKSTK EL+I T PK NVPPRFRDTA+FDKG NVV+KIPFTGYPKPKI
Sbjct: 7393 DEYFCRAVNKCGVKSTKGELLIKTPPKLNVPPRFRDTAFFDKGVNVVIKIPFTGYPKPKI 7452

Query: 421  TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
            TW R+ E+IESGGH+ VE  ERHA+LTI D + +D+ PYR+ AENDLG DSAI+KIQISD
Sbjct: 7453 TWVREGELIESGGHYTVEVKERHAVLTIIDGNRIDSGPYRITAENDLGQDSAIIKIQISD 7512

Query: 481  RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
            RPDPP+FP V+++GHDSLAL W+ P+WDGGSNITNY+VEKREHPM+SWIRVGNTRF +MA
Sbjct: 7513 RPDPPRFPQVDNVGHDSLALTWKPPVWDGGSNITNYLVEKREHPMTSWIRVGNTRFCSMA 7572

Query: 541  ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
            +TGLSPGHQY+FRV AEN+YGRSDPS  + LITT G
Sbjct: 7573 VTGLSPGHQYDFRVCAENIYGRSDPSEVTPLITTKG 7608

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
FB|FBgn0005666	8933	bt "bent" [Drosophila melanoga	0.969	0.064	0.633	1.3e-207
WB|WBGene00006759	7158	unc-22 [Caenorhabditis elegans	0.952	0.078	0.388	1.8e-112
MGI|MGI:98864	35	Ttn "titin" [Mus musculus (tax	0.954	16.11	0.322	3e-81
UNIPROTKB|F1N757	34	F1N757 "Uncharacterized protei	0.956	16.61	0.322	1.2e-80
UNIPROTKB|Q8WZ42	34	TTN "Titin" [Homo sapiens (tax	0.947	16.47	0.325	1.6e-80
UNIPROTKB|F1PV45	35	F1PV45 "Uncharacterized protei	0.949	16.02	0.321	1.5e-79
ZFIN|ZDB-GENE-030113-2	32	ttna "titin a" [Danio rerio (t	0.959	17.71	0.308	1.2e-70
ZFIN|ZDB-GENE-030616-413	28	ttnb "titin b" [Danio rerio (t	0.808	17.07	0.326	1.3e-69
FB|FBgn0035410	1427	CG14964 [Drosophila melanogast	0.654	0.271	0.358	1.3e-60
WB|WBGene00006436	18	ttn-1 [Caenorhabditis elegans	0.790	25.94	0.290	1.8e-47

FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)]

 Score = 2029 (719.3 bits), Expect = 1.3e-207, P = 1.3e-207
 Identities = 365/576 (63%), Positives = 445/576 (77%)

Query:     2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV--QSDD-RFKFTVLDDYIIIFIKEI 58
             P+ L +PEGDN+K+KIFY+GDQP+ V L KN  V+   +DD   K  + DDY+ I+I+ I
Sbjct:  7354 PSELKLPEGDNSKIKIFYSGDQPLTVILKKNNEVICDSNDDTHVKVNIFDDYVAIYIRNI 7413

Query:    59 RKEDAGDYXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXDVSEITKHTCTLHWNPPKYDGG 118
              K D G Y              F                +S I K++C L+W PP YDGG
Sbjct:  7414 VKSDGGPYQIEFTNESGSATGEFYVHITGMPSAPTGPMGISYINKNSCMLNWRPPSYDGG 7473

Query:   119 LKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
             LKV+HYV+ER+D+S PHWI +S+TC DT F VQGL E QEY+F VMAVNENGMGPPLEG+
Sbjct:  7474 LKVSHYVIERKDVSSPHWITVSSTCKDTAFNVQGLIENQEYIFRVMAVNENGMGPPLEGL 7533

Query:   179 NPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQR 238
             NPI+AK P D PSPPG P +T++GGDFV+L W+KP  DGG+ IQGYWIDK EVGS+ WQR
Sbjct:  7534 NPIRAKDPIDPPSPPGSPQITEIGGDFVHLEWEKPESDGGAHIQGYWIDKREVGSNTWQR 7593

Query:   239 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP 298
             VN  ICA +QIN  NLIEGRQYEFR++AQN AGLS  SSAS +V+I DP AA  P I+ P
Sbjct:  7594 VNATICAANQINCINLIEGRQYEFRIFAQNVAGLSTESSASQAVKIIDPQAASPPLIVKP 7653

Query:   299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
             LR+AN IQNHNAQF CTI G PKPTISW KG+REI+  AR+H+++EGD + L IN V+G 
Sbjct:  7654 LRDANCIQNHNAQFTCTINGVPKPTISWYKGAREISNGARYHMYSEGDNHFLNINDVFGE 7713

Query:   359 DADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP 418
             DADEYVCRAVNK G KST+A L IMTAPK NVPPRFRDTAYFDKGENVV+KIPFTG+PKP
Sbjct:  7714 DADEYVCRAVNKAGAKSTRATLAIMTAPKLNVPPRFRDTAYFDKGENVVIKIPFTGFPKP 7773

Query:   419 KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
             +I W RD E IESGGH+ VE  ERHA+L IRD S++D+ PYR+ AEN+LG D+AI+++QI
Sbjct:  7774 RIHWVRDGENIESGGHYTVEVKERHAVLIIRDGSHLDSGPYRITAENELGSDTAIIQVQI 7833

Query:   479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTT 538
             SDRPDPP+FP +E IG +SL+L W+AP+WDG S+ITNY VE+REHP+SSWIRVGNTRFT+
Sbjct:  7834 SDRPDPPRFPLIESIGTESLSLSWKAPVWDGCSDITNYYVERREHPLSSWIRVGNTRFTS 7893

Query:   539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
             MA++GL+PG +Y+FR++A+NVYGRSD S TS LI T
Sbjct:  7894 MAVSGLTPGKEYDFRIFADNVYGRSDASDTSTLIKT 7929

GO:0005737 "cytoplasm" evidence=ISS

GO:0004687 "myosin light chain kinase activity" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

WB|WBGene00006759 unc-22 [Caenorhabditis elegans (taxid:6239)]

 Score = 1131 (403.2 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 220/566 (38%), Positives = 319/566 (56%)

Query:     1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD-RFKFTVLDDYIIIFIKEIR 59
             +PN + +P GD  ++KI+++G  P   SL  N   +  D    +    DD+I+I I  + 
Sbjct:  5632 VPNTI-LPSGDLVRLKIYFSGTAPFRHSLVLNREEIDMDHPTIRIVEFDDHILITIPALS 5690

Query:    60 KEDAGDYXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXDVSEITKHTCTLHWNPPKYDGGL 119
               +AG Y              F                +S I   T TL W PP  DGG 
Sbjct:  5691 VREAGRYEYTVSNDSGEATTGFWLNVTGLPEAPQGPLHISNIGPSTATLSWRPPVTDGGS 5750

Query:   120 KVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
             K+T YVVE+RD+S   W+ +++   D  +IV GL E  EY F V A NENG+G PL   +
Sbjct:  5751 KITSYVVEKRDLSKDEWVTVTSNVKDMNYIVTGLFENHEYEFRVSAQNENGIGAPLVSEH 5810

Query:   180 PIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239
             PI A+ P+D P+ P    + QVGGD+V LSW +PL DGG R++GY ++K E   D W R 
Sbjct:  5811 PIIARLPFDPPTSPLNLEIVQVGGDYVTLSWQRPLSDGGGRLRGYIVEKQEEEHDEWFRC 5870

Query:   240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL 299
             N     P+  N+PNLI+GR+Y +RV+A N+AGLS  +    ++  +   + + P+I+ PL
Sbjct:  5871 NQNPSPPNNYNVPNLIDGRKYRYRVFAVNDAGLSDLAELDQTL-FQASGSGEGPKIVSPL 5929

Query:   300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
              + N        F+C I+G P+P   W KG +E+  ++++ +  +GD   LIIN +   D
Sbjct:  5930 SDLNEEVGRCVTFECEISGSPRPEYRWFKGCKELVDTSKYTLINKGDKQVLIINDLTSDD 5989

Query:   360 ADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK 419
             ADEY CRA N  G +ST+A L I T P+  +PP++       KGE + +KIP+  YP+ +
Sbjct:  5990 ADEYTCRATNSSGTRSTRANLRIKTKPRVFIPPKYHGGYEAQKGETIELKIPYKAYPQGE 6049

Query:   420 ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
               W +D E IE+   F + T ++ A L I +AS  D   YRVV EN +G DS  V + ++
Sbjct:  6050 ARWTKDGEKIENNSKFSITTDDKFATLRISNASREDYGEYRVVVENSVGSDSGTVNVTVA 6109

Query:   480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTM 539
             D P+PP+FP +E+I  +++ L W+ P  DGGS +TNY +EKRE    SW     +R+T  
Sbjct:  6110 DVPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYT 6169

Query:   540 AITGLSPGHQYEFRVYAENVYGRSDP 565
              I GL  G QYEFR+ AEN +G+S P
Sbjct:  6170 TIEGLRAGKQYEFRIIAENKHGQSKP 6195

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0031672 "A band" evidence=IDA

MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)]

 Score = 793 (284.2 bits), Expect = 3.0e-81, Sum P(2) = 3.0e-81
 Identities = 185/573 (32%), Positives = 273/573 (47%)

Query:    10 GDNTKVKIFYAGDQPMEVSLTKNG-RVVQSDDRFKFTVLDDYIIIFIKEI-RKEDAGDYX 67
             G   ++ + Y G +P+      +G +++Q+ ++      + Y  + +K + RK  AG Y 
Sbjct: 32432 GSTLRLHVMYIG-RPVPAMTWFHGQKLLQNSEKITIENTEHYTHLVMKNVQRKTHAGKYK 32490

Query:    68 XXXXXXXXXXXXXFXXXXXXXXXXXXXXXDVSEITKHTCTLHWNPPKYDGGLKVTHYVVE 127
                                           +  + K++  + W PP  DGG  +T+YVVE
Sbjct: 32491 VQLSNAFGTVDATLDVEIQDKPDKPTGPIVIEALLKNSVVISWKPPADDGGSWITNYVVE 32550

Query:   128 RRDISM-PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
             + +      W  +S+    TT  +  LTE   Y F V A N  G+  PLE  + +  KSP
Sbjct: 32551 KCEAKEGAEWQLVSSAISVTTCRIVNLTENAGYYFRVSAQNTFGISEPLEVASIVIIKSP 32610

Query:   187 YDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP 246
             ++KP  PG P +T V  D   ++W  P  DGG++I+ Y++++ E   + W  V       
Sbjct: 32611 FEKPGVPGKPTITAVTKDSCVVAWKPPASDGGAKIRNYYLERREKKQNKWIAVTTEEIRE 32670

Query:   247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 306
             +  ++ NLIEG +YEFRV  +N  G S  S  S  V  K  +  +AP     LRN N   
Sbjct: 32671 TVFSVQNLIEGLEYEFRVKCENLGGESEWSEISEPVTPKSDVPIQAPHFKEELRNLNVRY 32730

Query:   307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GDTYTLIINSVYGVDADEYV 364
               NA   C +TG PKP + W +  +EI      +   E  G  + LII SV   DA  Y 
Sbjct: 32731 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQ 32790

Query:   365 CRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD--TAYFDKGENVVVKIPFTGYPKPKITW 422
              RA N+GG  S  A L +    K ++P         +  +GE V +KIPF+G P P ITW
Sbjct: 32791 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITW 32850

Query:   423 YRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
              +  ++I++ GH+ V  +     L   +     D   Y V A+N  G+D   V++ ++D 
Sbjct: 32851 QKGQDLIDNNGHYQVIVTRSFTSLVFSNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 32910

Query:   482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
             PDPP+   V D+  DS+ L W  P  DGGS +TNYIVEK       W+RVG  R T   +
Sbjct: 32911 PDPPRGVKVSDVSRDSVNLTWTEPASDGGSKVTNYIVEKCATTAERWLRVGQARETRYTV 32970

Query:   542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
               L     Y+FRV AEN +G S PS  S+   T
Sbjct: 32971 INLFGKTSYQFRVIAENKFGLSKPSEPSEPTVT 33003

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0003300 "cardiac muscle hypertrophy" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=TAS

GO:0005865 "striated muscle thin filament" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IMP

GO:0007512 "adult heart development" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030017 "sarcomere" evidence=IDA

GO:0030018 "Z disc" evidence=ISO;IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=ISO

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=ISO

GO:0030506 "ankyrin binding" evidence=IPI

GO:0031430 "M band" evidence=ISO;IDA

GO:0031433 "telethonin binding" evidence=ISO

GO:0031672 "A band" evidence=IDA

GO:0031674 "I band" evidence=ISO;IDA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0042805 "actinin binding" evidence=ISO

GO:0043056 "forward locomotion" evidence=IMP

GO:0043621 "protein self-association" evidence=ISO

GO:0045214 "sarcomere organization" evidence=ISO;IMP;TAS

GO:0045859 "regulation of protein kinase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=ISO

GO:0048769 "sarcomerogenesis" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

GO:0051371 "muscle alpha-actinin binding" evidence=ISO

GO:0051592 "response to calcium ion" evidence=ISO

GO:0055002 "striated muscle cell development" evidence=IMP

GO:0055003 "cardiac myofibril assembly" evidence=ISO;IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 791 (283.5 bits), Expect = 1.2e-80, Sum P(2) = 1.2e-80
 Identities = 185/574 (32%), Positives = 272/574 (47%)

Query:    10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-RKEDAGDYXX 68
             G   ++ + Y G     ++  +  +++Q+ +       + Y  + +K + RK  AG Y  
Sbjct: 31586 GSTLRIHVMYIGRPVPAITWFRGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV 31645

Query:    69 XXXXXXXXXXXXFXXXXXXXXXXXXXXXDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128
                                          +  + K++  + W PP  DGG  +T+YVVE+
Sbjct: 31646 QLSNVLGTVDTMLDVEIQDKPDKPTGPIVIEALLKNSVVISWKPPADDGGSWITNYVVEK 31705

Query:   129 RDISM-PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
              +      W  +S+    TT  +  LTE   Y F V A N  G+  PLE  + +  KSP+
Sbjct: 31706 CEAKEGAEWQLVSSAISVTTCRIVNLTENAGYYFRVSAQNMFGISEPLEVSSVVIIKSPF 31765

Query:   188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
             +KP  PG P +T V  D   ++W  P  DGG++I+ Y+++K E   + W  V       +
Sbjct: 31766 EKPGAPGKPTITAVTKDSCVVAWKPPASDGGAKIRNYYLEKREKKQNKWIAVTTDEIRET 31825

Query:   248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
               ++ NLIEG +YEFRV  +N  G S  S  S  V  K  +  +AP     LRN N    
Sbjct: 31826 VFSVQNLIEGLEYEFRVKCENLGGESEWSEISEPVTPKSDVPIQAPHFKEELRNLNVRYQ 31885

Query:   308 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GDTYTLIINSVYGVDADEYVC 365
              NA   C +TG PKP + W +  +EI      +   E  G  + LII SV   DA  Y  
Sbjct: 31886 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 31945

Query:   366 RAVNKGGVKSTKAELIIM-TAP-KFNVPPRFRD--TAYFDKGENVVVKIPFTGYPKPKIT 421
             RA N+GG  S  A L +  T P K ++P         +  +GE + +KIPF+G P P IT
Sbjct: 31946 RATNQGGSVSGTASLEVEDTVPAKIHLPKNLEGMGAVHALRGEVISIKIPFSGKPDPVIT 32005

Query:   422 WYRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVAENDLGMDSAIVKIQISD 480
             W +  ++I++ GH+ V  +     L   +     D   Y V A+N  G+D   V++ ++D
Sbjct: 32006 WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 32065

Query:   481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
              PDPP+   V D+  DS+ L W  P  DGGS +TNYIVEK       WIRVG  R T   
Sbjct: 32066 VPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKVTNYIVEKCATTAERWIRVGQARETRYT 32125

Query:   541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
             +  L     Y+FR+ AEN +G S PS  S+   T
Sbjct: 32126 VINLFGKTSYQFRIIAENKFGLSKPSEPSEPTVT 32159

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048769 "sarcomerogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043056 "forward locomotion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005865 "striated muscle thin filament" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003300 "cardiac muscle hypertrophy" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)]

 Score = 792 (283.9 bits), Expect = 1.6e-80, Sum P(2) = 1.6e-80
 Identities = 185/569 (32%), Positives = 271/569 (47%)

Query:    10 GDNTKVKIFYAGDQPMEVSLTKNG-RVVQSDDRFKFTVLDDYIIIFIKEI-RKEDAGDYX 67
             G   ++ + Y G +P+      +G +++Q+ +       + Y  + +K + RK  AG Y 
Sbjct: 31570 GSTLRLHVMYIG-RPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYK 31628

Query:    68 XXXXXXXXXXXXXFXXXXXXXXXXXXXXXDVSEITKHTCTLHWNPPKYDGGLKVTHYVVE 127
                                           +  + K++  + W PP  DGG  +T+YVVE
Sbjct: 31629 VQLSNVFGTVDAILDVEIQDKPDKPTGPIVIEALLKNSAVISWKPPADDGGSWITNYVVE 31688

Query:   128 RRDISM-PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
             + +      W  +S+    TT  +  LTE   Y F V A N  G+  PLE  + +  KSP
Sbjct: 31689 KCEAKEGAEWQLVSSAISVTTCRIVNLTENAGYYFRVSAQNTFGISDPLEVSSVVIIKSP 31748

Query:   187 YDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP 246
             ++KP  PG P +T V  D   ++W  P  DGG++I+ Y+++K E   + W  V       
Sbjct: 31749 FEKPGAPGKPTITAVTKDSCVVAWKPPASDGGAKIRNYYLEKREKKQNKWISVTTEEIRE 31808

Query:   247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 306
             +  ++ NLIEG +YEFRV  +N  G S  S  S  +  K  +  +AP     LRN N   
Sbjct: 31809 TVFSVKNLIEGLEYEFRVKCENLGGESEWSEISEPITPKSDVPIQAPHFKEELRNLNVRY 31868

Query:   307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GDTYTLIINSVYGVDADEYV 364
               NA   C +TG PKP + W +  +EI      +   E  G  + LII SV   DA  Y 
Sbjct: 31869 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQ 31928

Query:   365 CRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD--TAYFDKGENVVVKIPFTGYPKPKITW 422
              RA N+GG  S  A L +    K ++P         +  +GE V +KIPF+G P P ITW
Sbjct: 31929 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITW 31988

Query:   423 YRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
              +  ++I++ GH+ V  +     L   +     D   Y V A+N  G+D   V++ ++D 
Sbjct: 31989 QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 32048

Query:   482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
             PDPP+   V D+  DS+ L W  P  DGGS ITNYIVEK       W+RVG  R T   +
Sbjct: 32049 PDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTV 32108

Query:   542 TGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
               L     Y+FRV AEN +G S PS  S+
Sbjct: 32109 INLFGKTSYQFRVIAENKFGLSKPSEPSE 32137

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0031430 "M band" evidence=IEA;IDA

GO:0043056 "forward locomotion" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=NAS;TAS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0002020 "protease binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030049 "muscle filament sliding" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0051592 "response to calcium ion" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0048739 "cardiac muscle fiber development" evidence=IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0055003 "cardiac myofibril assembly" evidence=IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0007076 "mitotic chromosome condensation" evidence=IEP

GO:0051015 "actin filament binding" evidence=IDA

GO:0042805 "actinin binding" evidence=IDA;IPI

GO:0050790 "regulation of catalytic activity" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=IMP

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

GO:0035995 "detection of muscle stretch" evidence=TAS

GO:0031433 "telethonin binding" evidence=ISS;IPI

GO:0003300 "cardiac muscle hypertrophy" evidence=IMP

GO:0048769 "sarcomerogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 780 (279.6 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
 Identities = 183/570 (32%), Positives = 269/570 (47%)

Query:    10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-RKEDAGDYXX 68
             G   ++ + Y G     ++     +++Q+ +       + Y  + +K + RK  AG Y  
Sbjct: 32384 GSTLRLHVMYIGRPVPSITWFYGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV 32443

Query:    69 XXXXXXXXXXXXFXXXXXXXXXXXXXXXDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128
                                          +  + K++  + W PP  DGG  +T+YVVE+
Sbjct: 32444 QLSNIFGTVDSILDVEIQDKPDKPTGPLVIEALLKNSVVISWKPPADDGGSWITNYVVEK 32503

Query:   129 RDISM-PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
              +      W  +S+    TT  +  LTE   Y F V A N  G+  PLE  + +  KSP+
Sbjct: 32504 CEAKEGAEWQLVSSAISVTTCRIVNLTENAGYYFRVSAQNTFGISEPLEVASVVIIKSPF 32563

Query:   188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
             +KP  PG P +T +  D   ++W  P  DGG++I+ Y+++K E   + W  V       +
Sbjct: 32564 EKPGAPGKPTITALTKDSCVVAWKPPASDGGAKIRNYYLEKREKKQNKWIAVTTEEIRET 32623

Query:   248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
               ++ NLIEG +YEFRV  +N  G S  S  S     K  +  +AP     LRN N    
Sbjct: 32624 VFSVQNLIEGLEYEFRVKCENLGGESEWSEISEPATPKSDVPIQAPHFKEELRNLNVRYQ 32683

Query:   308 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GDTYTLIINSVYGVDADEYVC 365
              NA   C +TG PKP + W +  +EI      +   E  G  + LII SV   DA  Y  
Sbjct: 32684 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 32743

Query:   366 RAVNKGGVKSTKAELIIM-TAP-KFNVPPRFRD--TAYFDKGENVVVKIPFTGYPKPKIT 421
             RA N+GG  S  A L +  T P K ++P         +  +GE V +KIPF+G P P IT
Sbjct: 32744 RATNQGGSVSGTASLEVEDTVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVIT 32803

Query:   422 WYRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVAENDLGMDSAIVKIQISD 480
             W +  ++I++ GH+ V  +     L   +     D   Y V A+N  G+D   V++ ++D
Sbjct: 32804 WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 32863

Query:   481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
              PDPP+   V D+  DS+ L W  P  DGGS ITNYI+EK       W+RVG  R T   
Sbjct: 32864 VPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIIEKCATTAERWLRVGQARETRYT 32923

Query:   541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
             +  L     Y+FRV AEN +G S PS  S+
Sbjct: 32924 VINLFGKTSYQFRVIAENKFGLSKPSEPSE 32953

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

ZFIN|ZDB-GENE-030113-2 ttna "titin a" [Danio rerio (taxid:7955)]

 Score = 709 (254.6 bits), Expect = 1.2e-70, Sum P(2) = 1.2e-70
 Identities = 179/581 (30%), Positives = 275/581 (47%)

Query:    10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-RKEDAGDYXX 68
             G + ++ + Y G    ++      + +   +       + Y  + I+ + RK +AG Y  
Sbjct: 30276 GTSLRLHVVYIGRPIPQIMWFYGKKPLNPSENVIIENTESYTHLVIRNVQRKTNAGRYKV 30335

Query:    69 XXXXXXXXXXXXFXXXXXXXXXXXXXXXDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128
                                          V  + K +  + W PPK DGG  +T+Y+VE+
Sbjct: 30336 QLSNKFGTVDTVLRVEIQDKPLLPEGPVVVDALLKSSVIISWKPPKDDGGSMITNYIVEK 30395

Query:   129 RDISM-PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
             R+      W  +S+    TT  V  L E   Y F V A N+ G+   LE  + +  KSP+
Sbjct: 30396 REAKEGEQWHLVSSAVSGTTCRVPNLIESSGYYFRVSAQNQYGISESLEIPSVVIIKSPF 30455

Query:   188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
             +KP  P  P V+ V  D   +SW  P  DGG++I+ Y+++K E   + W  V       +
Sbjct: 30456 EKPGVPQRPFVSSVTKDSCVVSWKPPTSDGGAKIKNYFLEKREKKQNKWIAVTTGEIHET 30515

Query:   248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
                   L+EG +YEFRV  +N  G S  S  S  V  K   A +AP     LR+      
Sbjct: 30516 SYTAKGLLEGFEYEFRVKCENIGGESDWSEISEPVIPKSDTALRAPFFKDELRDMCVKYK 30575

Query:   308 HNAQFQCTITGCPKPTISWLKGSREI-TPSARHHIFA-EGDTYTLIINSVYGVDADEYVC 365
              NA F   + G PKP + W K  +EI    A+  +   +G  + L+I++    DA  Y  
Sbjct: 30576 ANATFVTKVVGHPKPVVKWYKNGKEILADGAKIKVQEFKGGYFQLVISNADENDAAAYQI 30635

Query:   366 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRD--TAYFDKGENVVVKIPFTGYPKPKITWY 423
             RA N+ G  ST   L +    K  +P   +     +  +GE V +KIP +G P P +TW 
Sbjct: 30636 RATNQLGSISTSMNLDVEVPAKIYLPLHLQGMGAVHAIRGEVVTIKIPISGKPDPVVTWQ 30695

Query:   424 RDNEVIESGGHFHVE-TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
             +  E+I +  +  V  T    +++ ++     D+  Y + A+N  GMD   V++ ++D P
Sbjct: 30696 KGQEIINNTAYHQVIITRSFTSLVFLKGVQRKDSGYYIICAKNRFGMDKQTVELDVADVP 30755

Query:   483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT---RFTTM 539
             DPP+   V DIG D+L L W +P  DGGS I NYI+EK       WIRV  T   ++T M
Sbjct: 30756 DPPKDVKVSDIGRDTLTLTW-SPGNDGGSEIINYIIEKCPTTGDRWIRVAQTSESQYTVM 30814

Query:   540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLS 580
             ++ G +   +Y+FRV AEN +G SDPS  +D +TT  + L+
Sbjct: 30815 SLFGKT---KYQFRVIAENRFGVSDPSAPTDPVTTKEDKLA 30852

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IMP

GO:0060047 "heart contraction" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-030616-413 ttnb "titin b" [Danio rerio (taxid:7955)]

 Score = 724 (259.9 bits), Expect = 1.3e-69, Sum P(3) = 1.3e-69
 Identities = 159/487 (32%), Positives = 247/487 (50%)

Query:    97 DVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEG 156
             ++ ++TK +  L W  PK DGG ++T Y +E +++S   WI   T    T + +  LT  
Sbjct: 25960 EIMDVTKSSAALAWTKPKDDGGSRITGYFIEYKEVSSDKWIRHETKIISTMYTLSQLTAD 26019

Query:   157 QEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG-IPVVTQVGGDFVNLSWDKPLD 215
              EY F V+ VN+ G   P    + +  K P+DKPS PG I  +T V  D++ ++W+ P  
Sbjct: 26020 AEYQFRVIVVNDIGESEPGPASDSVICKDPFDKPSQPGEIDTMT-VTRDYITINWEAPSC 26078

Query:   216 DGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLP 275
             DGG  + GYWI+  + G  AW++ N       Q     L E  +YEFRV+A+NE G+S P
Sbjct: 26079 DGGKPVLGYWIEYRKSGDSAWKKCNKERTKDKQYTQGGLQEATEYEFRVFAENETGISRP 26138

Query:   276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
                +  ++ K     K P +   +    A     A  +C I G P P I W KG +EI  
Sbjct: 26139 RRTATGIKTKLSAGTK-PALRKEMDEVTAKLGQTATLKCQIIGRPVPEIKWYKGGKEIKE 26197

Query:   336 SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFR 395
               ++   ++G  +TL I++    D   Y C+AVN+ G   T   L++  AP F VP   +
Sbjct: 26198 GRKYAATSDGRNHTLTISTDQQEDEGLYTCKAVNEAGECETSGALVLEAAPLFPVP--LK 26255

Query:   396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASN-V 454
             D  +   G  V + + + G P+PKI W    + +E   +  +E +E++  L +++    +
Sbjct: 26256 DKIFATCGSTVRIHVVYIGRPQPKIMWLYGTKALEPSENVIIENTEQYTHLILKNVQRRI 26315

Query:   455 DTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED-IGHDSLALVWRAPIWDGGSNI 513
             +   YR+   N  G    + +++I D+P  P+ P V D +  +S+ + W+AP  DGGS I
Sbjct: 26316 NGGKYRIRINNHFGAADTVTQVEILDKPAMPEGPLVLDALLKNSVIISWKAPKDDGGSMI 26375

Query:   514 TNYIVEKREHPMSS-WIRVGNT-RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDL 571
             TNYIVEKRE    + W  V ++   T+  I  L     Y FRV A+N YG S+   T   
Sbjct: 26376 TNYIVEKREDKEGAEWELVSSSITGTSCRIPNLVENEGYHFRVSAQNRYGNSESLETPSA 26435

Query:   572 ITTYGEL 578
             I    +L
Sbjct: 26436 ILIKSQL 26442

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0014866 "skeletal myofibril assembly" evidence=IMP

FB|FBgn0035410 CG14964 [Drosophila melanogaster (taxid:7227)]

 Score = 632 (227.5 bits), Expect = 1.3e-60, P = 1.3e-60
 Identities = 141/393 (35%), Positives = 200/393 (50%)

Query:   186 PYDKPSPPGIPVVTQVG-----GDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
             P+ +PSPPG P++T V       D VNL WD+PL DGGS I GY ++   +GS  W R  
Sbjct:     9 PHQRPSPPGRPILTPVALPEQQPDVVNLRWDRPLHDGGSPITGYTVEHRRMGSPHWVRAT 68

Query:   241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK-DPMAAKAPEIIVPL 299
                     + I  L  G +Y+FR +A+N  G S  S  S+ + +     A   P  I  L
Sbjct:    69 PTPVDRCDVCISGLEPGWRYQFRCFAENIVGRSDASELSDPLTVTLQRNAITVPRFIDEL 128

Query:   300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
              + NA+++   +F+  I G P P I+W K   EI  S R  I  + +   L+I+ V   D
Sbjct:   129 VDTNAVEDERIEFRVRILGEPPPEINWFKDGYEIFSSRRTKIVNDNEASVLVIHQVALTD 188

Query:   360 ADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK 419
               E  C A N+ G   TKA L++   PK  +P  + D    +  E + +K+   G P P 
Sbjct:   189 EGEIKCTATNRAGHVITKARLMVQAPPKIRLPRTYEDGLIVEADEVLRLKVGVAGQPPPA 248

Query:   420 ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
             ITW  + EVI  GG F V  +E++++L I +    D   Y V A N LG DS    + ++
Sbjct:   249 ITWLHEGEVIAPGGRFEVSNTEKNSLLKIDNVLREDRGEYMVKAWNRLGEDSTSFLVTVT 308

Query:   480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTM 539
              RP+PP  P +      S  L W AP+ DGG  I NYIVE      + W++   TR  + 
Sbjct:   309 ARPNPPGTPKLNMSFGKSATLSWTAPLDDGGCKIGNYIVEYFRVGWNVWLKAATTRALST 368

Query:   540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLI 572
              +  L  G +Y+FRV AEN YG S+PS  S+L+
Sbjct:   369 TLHDLIEGSEYKFRVKAENPYGLSEPSGESELL 401

GO:0017022 "myosin binding" evidence=ISS

WB|WBGene00006436 ttn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 502 (181.8 bits), Expect = 1.8e-47, Sum P(2) = 1.8e-47
 Identities = 144/495 (29%), Positives = 211/495 (42%)

Query:   100 EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CIST-------------TCHD 145
             ++T+ +    W  P+ +GG ++T Y VER++     W  C  T             T +D
Sbjct: 15391 DVTESSAEFSWKAPENNGGCEITGYNVERKESKNKGWKQCGKTKELKFKADGLEEGTDYD 15450

Query:   146 ---TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP---GIPVVT 199
                +     G     E     +   E       E     + KS  DK S     G P   
Sbjct: 15451 VKVSAVNTMGTGSALEGKITTLKKKEETGKQKSEKSESDEKKSESDKVSELKQIGKPEYV 15510

Query:   200 QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA-WQRVNVAICAPSQINIPNLIEGR 258
                   + L W    D+       Y +   E  S   W  V   I   S   I  L EG 
Sbjct: 15511 SSTATSIALKWTSDNDE-----VTYTVQMKEANSKRPWAVVAKEISECSA-TIAQLKEGT 15564

Query:   259 QYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITG 318
              Y FRV AQN+ G ++ S  S S++ KD   +K P       +  A++N   +     TG
Sbjct: 15565 SYLFRVIAQNKTGQTVTSEQSESIECKDTTESKKPAFTNAPTDLTAVKNGKTKITAEFTG 15624

Query:   319 CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 378
              P P I W K  +EI    R  I       +L I  +   D  EY     N  G      
Sbjct: 15625 HPAPEIHWFKNKKEIFSGKRQWIENIAGATSLTIGEMREDDEGEYKIVVKNTAGSVEHSC 15684

Query:   379 ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN-EVIESGGHFHV 437
             +L +   P+ N   R+  T  FDKGE V +++ F+G P+P++ W  +N +VIE      +
Sbjct: 15685 KLTMDQLPEINRVDRYASTLVFDKGETVKLRLSFSGRPQPEVIWIDNNGKVIEESRKMKI 15744

Query:   438 ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDS 497
             E +  + +LTI    + D   + +  +N  G D   + IQ++DRP  P  P VED   DS
Sbjct: 15745 EKTVLNTVLTINSIDSQDQGEFALKIKNRCGEDKYAIGIQVTDRPAAPGKPAVEDQNVDS 15804

Query:   498 LALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAE 557
             + L W AP  DGGS + NY VE       +W +   T+   + +  L PG  Y FRV A+
Sbjct: 15805 VRLRWAAPTNDGGSPVRNYTVEMCTEKGKTWTKAEVTKQAFITLFNLVPGESYRFRVRAD 15864

Query:   558 NVYGRSDPSTTSDLI 572
             N +G+S+PS  S+L+
Sbjct: 15865 NTFGQSEPSDESELV 15879

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0031672 "A band" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	591
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-25
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	9e-21
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	4e-20
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	5e-19
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	3e-16
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	3e-15
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	5e-15
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	1e-14
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-13
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	1e-12
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-12
smart00409	85	smart00409, IG, Immunoglobulin	6e-12
smart00410	85	smart00410, IG_like, Immunoglobulin like	8e-12
smart00409	85	smart00409, IG, Immunoglobulin	8e-12
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	1e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-10
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	2e-10
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	3e-10
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	8e-10
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-08
smart00409	85	smart00409, IG, Immunoglobulin	2e-08
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	3e-08
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	5e-08
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	5e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	7e-08
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-07
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	3e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	4e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	6e-07
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	7e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	8e-07
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	1e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	2e-06
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	4e-06
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	5e-06
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	7e-06
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	8e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	1e-05
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	1e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	3e-05
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	3e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	3e-05
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	3e-05
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	4e-05
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	6e-05
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	6e-05
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	7e-05
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	8e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	9e-05
cd05864	70	cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l	9e-05
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	3e-04
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	0.001
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	0.002
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	0.002
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	0.002
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.002
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.002
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	0.003
cd05855	79	cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-	0.003

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 98.9 bits (247), Expect = 4e-25
 Identities = 32/90 (35%), Positives = 47/90 (52%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
           P+     ++    +  +A+F CT+TG P PT+SW K  + +  S R  +  EG TYTL I
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           ++V   D  +Y C A N  G     AEL +
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 86.8 bits (215), Expect = 9e-21
 Identities = 39/94 (41%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRF--TTM 539
           P PP    V D+   S+ L W  P  D G  IT Y+VE RE     W  V  T    T+ 
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPE-DDGGPITGYVVEYREKGSGDWKEVEVTPGSETSY 59

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            +TGL PG +YEFRV A N  G S PS +  + T
Sbjct: 60  TLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 84.9 bits (210), Expect = 4e-20
 Identities = 38/91 (41%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           PSPP    VT V    V LSW  P DDGG  I GY ++  E GS  W+ V V   + +  
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEVEVTPGSETSY 59

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
            +  L  G +YEFRV A N  G S PS +  
Sbjct: 60  TLTGLKPGTEYEFRVRAVNGGGESPPSESVT 90

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 81.8 bits (202), Expect = 5e-19
 Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTT 147
           P PP   L V+++T  + TL W PP+ DGG  +T YVVE R+     W     T   +T+
Sbjct: 1   PSPPTN-LRVTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEVEVTPGSETS 58

Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI 181
           + + GL  G EY F V AVN  G  PP E +   
Sbjct: 59  YTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVT 92

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 73.4 bits (180), Expect = 3e-16
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK-VTHYVVERRDISMPHWICISTTCHDTT 147
           P PP   L V+++T  + TL W PP  DG    +  Y VE R+     W  ++ T   T+
Sbjct: 1   PSPPSN-LRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEG-SEWKEVNVTPSSTS 58

Query: 148 FIVQGLTEGQEYLFHVMAVNENGMG 172
           + + GL  G EY F V AVN  G G
Sbjct: 59  YTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 70.7 bits (173), Expect = 3e-15
 Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGG-SRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           PSPP    VT V    V LSW+ P DDG    I GY ++  E GS+ W+ VNV   + + 
Sbjct: 1   PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSE-WKEVNV-TPSSTS 58

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLS 273
             +  L  G +YEFRV A N AG  
Sbjct: 59  YTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 69.9 bits (172), Expect = 5e-15
 Identities = 20/74 (27%), Positives = 41/74 (55%)

Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAE 464
           +V +++P +G P P +TW +D + ++  G   +ET+     L I++A   D+  Y +  +
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK 60

Query: 465 NDLGMDSAIVKIQI 478
           N  G  SA + +++
Sbjct: 61  NPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 69.2 bits (169), Expect = 1e-14
 Identities = 35/84 (41%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGG-SNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
           P PP    V D+   S+ L W  P  DG    I  Y VE RE   S W  V  T  +T  
Sbjct: 1   PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEG-SEWKEVNVTPSSTSY 59

Query: 541 -ITGLSPGHQYEFRVYAENVYGRS 563
            +TGL PG +YEFRV A N  G  
Sbjct: 60  TLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
           PKF   P+        +GE+       TG P P ++W++D + + S   F V        
Sbjct: 1   PKFTQKPK---DVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT 57

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           LTI +    D   Y  VA N  G   A  ++ +
Sbjct: 58  LTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 34/87 (39%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH---PMSSWIRVGNTRFTTM 539
             P   TV D+   SL L W  P   G   IT Y VE R          I V  T  T+ 
Sbjct: 1   SAPTNLTVTDVTSTSLTLSWSPP--PGNGPITGYEVEYRPVNGGEEWKEITVPGTT-TSY 57

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPS 566
            +TGL PG +YE RV A N  G   PS
Sbjct: 58  TLTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 61.4 bits (149), Expect = 6e-12
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 309 NAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRA 367
           +    C  +G P P ++W K G + +  S R  +   G T TL I++V   D+  Y C A
Sbjct: 11  SVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAA 70

Query: 368 VNKGGVKSTKAELII 382
            N  G  S+   L +
Sbjct: 71  TNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 61.4 bits (149), Expect = 6e-12
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 309 NAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRA 367
           +    C  +G P P ++W K G + +  S R  +   G T TL I++V   D+  Y C A
Sbjct: 11  SVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAA 70

Query: 368 VNKGGVKSTKAELII 382
            N  G  S+   L +
Sbjct: 71  TNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 61.0 bits (148), Expect = 8e-12
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDN-EVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
           GE+V +    +G P P++TWY+   +++   G F V  S   + LTI + +  D+  Y  
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTC 68

Query: 462 VAENDLGMDSAIVKIQI 478
            A N  G  S+   + +
Sbjct: 69  AATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 61.0 bits (148), Expect = 8e-12
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDN-EVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
           GE+V +    +G P P++TWY+   +++   G F V  S   + LTI + +  D+  Y  
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTC 68

Query: 462 VAENDLGMDSAIVKIQI 478
            A N  G  S+   + +
Sbjct: 69  AATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGS-DAWQRVNVAICAPSQI 249
           S P    VT V    + LSW  P   G   I GY ++   V   + W+ + V     +  
Sbjct: 1   SAPTNLTVTDVTSTSLTLSWSPP--PGNGPITGYEVEYRPVNGGEEWKEITVPG-TTTSY 57

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPS 276
            +  L  G +YE RV A N AG   PS
Sbjct: 58  TLTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY----TLIINSVYGVDADEYVC 365
               C  +G P PTI+WLK  + +  S    + +   T     TL I++V   D+  Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 366 RAVNKGGVKSTKAE 379
            A N  G  S    
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
           +     F C   G P+P I+W KG  +++   RH + + G   TL I+ V   D  +Y C
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYEC 57

Query: 366 RAVNKGGVKSTKAELII 382
           +AVN  G + T A+L +
Sbjct: 58  QAVNIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI-SMPHWICISTTCHDTTFI 149
                L V+++T  + TL W+PP  +G   +T Y VE R +     W  I+     T++ 
Sbjct: 1   SAPTNLTVTDVTSTSLTLSWSPPPGNG--PITGYEVEYRPVNGGEEWKEITVPGTTTSYT 58

Query: 150 VQGLTEGQEYLFHVMAVNENGMGPP 174
           + GL  G EY   V AVN  G GPP
Sbjct: 59  LTGLKPGTEYEVRVQAVNGAGEGPP 83

Length = 84

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 55.3 bits (134), Expect = 8e-10
 Identities = 20/65 (30%), Positives = 33/65 (50%)

Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
          GD    VS  K+G+ ++S DRFK T       + I  ++ +D G YT   +NS+G    +
Sbjct: 26 GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEAS 85

Query: 81 FTINI 85
            + +
Sbjct: 86 AELTV 90

Length = 90

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 16/70 (22%), Positives = 34/70 (48%)

Query: 14 KVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS 73
          ++++  +G     V+ +K+G+ ++   R +         + IK   + D+G YT+ L N 
Sbjct: 3  RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNP 62

Query: 74 SGSVSGTFTI 83
          +G  S T  +
Sbjct: 63 AGEKSATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG-RVVQSDDRFKFTVLDDYIIIFIKEIRK 60
          P ++ + EG++  +    +G  P EV+  K G +++    RF  +       + I  +  
Sbjct: 1  PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 61 EDAGDYTVNLSNSSGSVSGTFTINI 85
          ED+G YT   +NSSGS S   T+ +
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG-RVVQSDDRFKFTVLDDYIIIFIKEIRK 60
          P ++ + EG++  +    +G  P EV+  K G +++    RF  +       + I  +  
Sbjct: 1  PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 61 EDAGDYTVNLSNSSGSVSGTFTINI 85
          ED+G YT   +NSSGS S   T+ +
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 27/93 (29%), Positives = 42/93 (45%)

Query: 393 RFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDAS 452
           +F +      GE+V +    TG      TW +  + I+ G    +E +E  + LTI +  
Sbjct: 5   QFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQ 64

Query: 453 NVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
                 Y +  EN LG   A V + + D+PDPP
Sbjct: 65  QEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP 97

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 50.7 bits (121), Expect = 5e-08
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 398 AYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH---FHVETSERHAILTIRDASNV 454
           A  + G++V +     G+P+P +TW +D E IESG     F+ + SE    +TI D   +
Sbjct: 13  ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSE----MTILDVDKL 68

Query: 455 DTAPYRVVAENDLGMDSAIVKIQI 478
           D A Y  +AEN  G   A + +++
Sbjct: 69  DEAEYTCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 49.8 bits (119), Expect = 5e-08
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 313 QCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG 372
           +C     PKPTISW KG+  +T S+R  I+ +G   +L I +V   D  +Y C A N  G
Sbjct: 7   ECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFG 63

Query: 373 VKSTKAELII 382
             ++   L +
Sbjct: 64  KANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 49.4 bits (117), Expect = 7e-08
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGH----FHVETSERHAILTIRDASNVDTAPYRV 461
           V +    +G P P ITW ++ + + S           TS   + LTI + +  D+  Y  
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 462 VAENDLGMDSAIVK 475
           VA N  G  SA V 
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 22/73 (30%), Positives = 33/73 (45%)

Query: 310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
           A  +C   G P P ++WLK   +ITP     +    +   L I++V   D   Y C A N
Sbjct: 1   ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKN 60

Query: 370 KGGVKSTKAELII 382
           + GV    + L +
Sbjct: 61  EAGVDEDISSLFV 73

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVI-ESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
           G  + + +P +G P P +TW R ++   E+ G   VE+ +  +   I  A   D   Y +
Sbjct: 10  GNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTI 69

Query: 462 VAENDLGMDSAIVKIQI 478
              N +G D A + +++
Sbjct: 70  TVTNPVGEDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
            +FQC + G P PT+ W K   E+ P  R  I    D  +L I +V   D   Y C A N
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGEL-PKGRAEIL---DDKSLKIRNVTAGDEGSYTCEAEN 56

Query: 370 KGGVKSTKAELII 382
             G     A L +
Sbjct: 57  MVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
           + +C  +G P+PTI+WLK  +      R   +      +TLI+ SV   D+ +Y C   N
Sbjct: 13  RLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVEN 72

Query: 370 KGG 372
           K G
Sbjct: 73  KYG 75

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370
           Q  C+  G P+PTI+W K   ++T S + HI  EG    L I  V   D   Y C A N 
Sbjct: 2   QIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNT 58

Query: 371 GGVKSTKAEL 380
            G  S    L
Sbjct: 59  IGYASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
           G++V +  P  G P P ITW +D + +     F    S     LTI+  S  D+  Y  V
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYTCV 57

Query: 463 AENDLG 468
           AEN  G
Sbjct: 58  AENSAG 63

Length = 63

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 410 IPFT--GYPKPKITWYRDNEVIESGGHFHVE-------TSERHAILTIRDASNVDTAPYR 460
           IPFT  G PKP +TWY +  V+    +   E        +E H  L   + ++V+   Y 
Sbjct: 3   IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYT 62

Query: 461 VVAENDLGMDSAIV 474
           +VA N+ G DS  +
Sbjct: 63  LVASNEYGQDSKSI 76

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
           NA A    +    C   G P+PT++W K    I      + F E D   + I  V  +D 
Sbjct: 12  NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNE-DGSEMTILDVDKLDE 70

Query: 361 DEYVCRAVNKGG 372
            EY C A NK G
Sbjct: 71  AEYTCIAENKAG 82

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 11/80 (13%)

Query: 309 NAQFQCTITGCPKPTISWLK-GSREI-------TPSARHHIFAEGDTYTLIINSVYGVDA 360
              FQC  TG P+P I W K GS+ +         S+R  +   GD   L I +V   D 
Sbjct: 3   TVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGD---LTITNVQRSDV 59

Query: 361 DEYVCRAVNKGGVKSTKAEL 380
             Y+C+ +N  G   TKA L
Sbjct: 60  GYYICQTLNVAGSILTKAYL 79

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 408 VKIP--FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
           V++P     YP P+I WY++ ++I                LTI+D +  D   Y VV  N
Sbjct: 1   VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK----SGHSLTIKDVTEEDAGNYTVVLTN 56

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 312 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADE--YVCRAVN 369
           F+C +TG P PT+ W+K    + PS    I  E +   L +     V +DE  Y C A N
Sbjct: 4   FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGL-----VKSDEGFYQCIAEN 58

Query: 370 KGGVKSTKAELII 382
             G     A+LII
Sbjct: 59  DVGNVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 1  MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV-LDDYIIIFIKEIR 59
          +P+ + I EG    +     GD   EVS  KN + +   D +   V    Y  + IK + 
Sbjct: 7  LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVS 66

Query: 60 KEDAGDYTVNLSNSSGSVSGTFTINI 85
           ED+G Y + + N  G  +   T+++
Sbjct: 67 SEDSGKYGIVVKNKYGGETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 408 VKIPFT--GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
           V+IP +  G P+P ITW +D   +   G FH+        L IRD    D   Y  VA N
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHI---SPEGYLAIRDVGVADQGRYECVARN 57

Query: 466 DLGMDS 471
            +G  S
Sbjct: 58  TIGYAS 63

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
           +  +    C   G P P I+WLK  + +  S R          TL I SV   D+  Y C
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVA----SGSTLTIKSVSLEDSGLYTC 56

Query: 366 RAVNKGG 372
            A N  G
Sbjct: 57  VAENSAG 63

Length = 63

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 311 QFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
           +F+C   G P PT+ WLK  +E     R          ++LI+ SV   D   Y C   N
Sbjct: 13  KFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 72

Query: 370 KGG 372
           + G
Sbjct: 73  EYG 75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 14/83 (16%), Positives = 32/83 (38%)

Query: 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 455
           +     +G    ++    G P PK+ W     ++       +ET+     L + + ++  
Sbjct: 8   NATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSET 67

Query: 456 TAPYRVVAENDLGMDSAIVKIQI 478
                  AEN +G  +  V++ +
Sbjct: 68  QTTVTCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 24/62 (38%), Positives = 29/62 (46%)

Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370
           +F C  TG P P I+W      +  SAR  I +EG   TL I  V   D   Y C A+N 
Sbjct: 5   EFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINT 64

Query: 371 GG 372
            G
Sbjct: 65  RG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 13/92 (14%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
            P +          +  +    C+  G P P  +W K    ++ S               
Sbjct: 1   KPVLTPS--PTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQN----------GFF 48

Query: 352 INSVYGVDADEYVCRAVNKGGVK-STKAELII 382
             +V   D+  Y C A N GG K S    L +
Sbjct: 49  TPNVSAEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARH---HIFAEGD--TYTL 350
           I  L N  A++       C   G P P I+W + +R  +   +     I   G     +L
Sbjct: 5   ITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSL 64

Query: 351 IINSVYGVDADEYVCRAVNKGGVKS 375
            +  V   DA  Y C A N+ G   
Sbjct: 65  TLKDVQLTDAGRYDCEASNRIGGDQ 89

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 22/81 (27%), Positives = 35/81 (43%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
              I+   R+    +  +A+F C + G P PT++W++  + I  S RH I +     T  
Sbjct: 3   PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62

Query: 352 INSVYGVDADEYVCRAVNKGG 372
           I+ V   D   Y     N  G
Sbjct: 63  ISKVQMSDEGNYTVVVENSEG 83

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 314 CTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYGVDADEYVCRAVNKGG 372
           CT+ G P P +SWLK  + +  S  +++   +G   +L I  V   D+ +Y     NK G
Sbjct: 23  CTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 310 AQFQCTITGCPKPTISWLKGSREITPSARH---HIFAEGDTYTLIINSVYGVDADEYVCR 366
           A+ +C  TG P P I+W K      P+AR    H+  E D +   I  V   D   Y C 
Sbjct: 1   ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVF--FIVDVKIEDTGVYSCT 58

Query: 367 AVNKGGVKSTKAELIIM 383
           A N  G  S  A L ++
Sbjct: 59  AQNTAGSISANATLTVL 75

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 313 QCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG 372
           +C     PKP  SW KG+  +  ++R  I+ +G   +L I ++  +D   Y C A N  G
Sbjct: 7   ECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRG 63

Query: 373 VKSTKAELII 382
             ++   L +
Sbjct: 64  KANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query: 316 ITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS 375
           I+G P PT++W K  + +  S R  I     + +L+I +    D+ +Y     N  G KS
Sbjct: 8   ISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKS 67

Query: 376 TKAELII 382
               + +
Sbjct: 68  ATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 16/95 (16%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
            P     P         +GE+V +     G P P  TWY+D   +          S    
Sbjct: 1   KPVLTPSP-----TVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPL----------SSSQN 45

Query: 445 ILTIRDASNVDTAPYRVVAEND-LGMDSAIVKIQI 478
                + S  D+  Y  VA N   G  S  V + +
Sbjct: 46  GFFTPNVSAEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 408 VKIP--FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
           VKIP  + GYP P++ WY++ ++I         T +R   LTI + +  D   Y VV  N
Sbjct: 1   VKIPVKYYGYPPPEVKWYKNGQLIVLN-----HTFKRGVHLTIYEVTEKDAGNYTVVLTN 55

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 19 YAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYI----IIFIKEIRKEDAGDYTVNLSNSS 74
           +G  P  ++  KNG+ + S    +             + I  +  ED+G YT   SNS+
Sbjct: 7  ASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66

Query: 75 GSVSGTFT 82
          G+VS + T
Sbjct: 67 GTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 20/71 (28%), Positives = 30/71 (42%)

Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
           +GE+        G P P +TW R+ ++I S     + ++E  +   I      D   Y V
Sbjct: 17  EGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTV 76

Query: 462 VAENDLGMDSA 472
           V EN  G   A
Sbjct: 77  VVENSEGKQEA 87

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 315 TITGCPKPTISWLKGSREITPS--ARHHIFAEGDTYT-LIINSVYGVDADEYVCRAVNKG 371
             +  P     W K  +E+      R+         + L IN     D+ EY C   N  
Sbjct: 7   ATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENIL 66

Query: 372 GVKSTKAEL 380
           G  +  A +
Sbjct: 67  GNDTVTANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 314 CTITGCPKPTISWLKGSREITPSARHHIFAEGDTY-TLIINSVYGVDADEYVCRAVNKGG 372
           CT+ G P P + W K  ++I  S  + +  E   Y +L I  V   D+ +Y     NK G
Sbjct: 23  CTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 17/66 (25%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 414 GYPKPKITWYRDNEVIESGGHFHVET-SERHAILTIRDASNVDTAPYRVVAENDLGMDSA 472
           G P P++ W+++++ IE   H+ V+    ++A LTI+  ++ D+  Y +  +N  G ++ 
Sbjct: 27  GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86

Query: 473 IVKIQI 478
            V + +
Sbjct: 87  DVTVSV 92

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 318 GCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-S 375
           G P+PT+SW K G      + R  I  +G+   L+I      D   Y C A N  G + S
Sbjct: 23  GHPEPTVSWRKDGQPLNLDNERVRIVDDGN---LLIAEARKSDEGTYKCVATNMVGERES 79

Query: 376 TKAELII 382
             A L +
Sbjct: 80  AAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 310 AQFQCTITGCPKPTISWLKGSREI-----TPSARHHIFAEGDTYTLII--NSVYGVDADE 362
           A   C   G P PTI WLK  + +      P +   +   G  + L +        D   
Sbjct: 19  ATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78

Query: 363 YVCRAVNKGGVKSTKA 378
           YVC A N  G   ++ 
Sbjct: 79  YVCVAHNSLGEAVSRN 94

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 406 VVVKIPFTGYPKPKITWYRD-NEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAE 464
           V ++    G+P+P   W+RD   + +  G++ V + ER   LT+R A   D+  Y   A 
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERT--LTLRSAGPDDSGLYYCCAH 58

Query: 465 NDLG 468
           N  G
Sbjct: 59  NAFG 62

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 17/66 (25%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 414 GYPKPKITWYRDNEVIESGGHFHVET-SERHAILTIRDASNVDTAPYRVVAENDLGMDSA 472
           G P P+++W ++++ +    H++V+    ++A LTI+  S+ D+  Y +V +N  G ++ 
Sbjct: 27  GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86

Query: 473 IVKIQI 478
            V + +
Sbjct: 87  DVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143263 cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-like) of Trk receptor TrkB

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 410 IPFT--GYPKPKITWYRDNEVIESGGHF----HV-ETSERHAILTIRDASNVDTAPYRVV 462
           IPFT  G PKP + W+ +  ++    +     HV   +E H  L + + ++++   Y +V
Sbjct: 3   IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLV 62

Query: 463 AENDLGMD 470
           A+N+ G D
Sbjct: 63  AKNEYGED 70

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	591
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4194|consensus	873		99.93
PHA02785	326	IL-beta-binding protein; Provisional	99.91
PHA02785	326	IL-beta-binding protein; Provisional	99.88
KOG4194|consensus	873		99.88
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.83
KOG3515|consensus	741		99.82
PHA02826	227	IL-1 receptor-like protein; Provisional	99.79
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.76
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.74
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.72
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.7
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.69
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.69
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.69
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.68
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.68
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.67
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.67
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.66
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.66
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.66
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.65
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.65
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.64
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.64
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.63
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.63
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.63
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.62
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.62
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.62
KOG3515|consensus	741		99.62
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.61
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.61
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.61
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.61
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.61
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.6
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.6
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.6
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.59
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.59
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.59
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.59
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.59
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.58
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.58
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.57
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.57
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.57
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.56
PHA02826	227	IL-1 receptor-like protein; Provisional	99.55
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.55
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.55
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.55
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.55
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.55
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.55
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.55
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.55
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.54
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.54
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.54
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.54
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.54
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.53
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.53
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.53
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.53
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.53
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.53
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.52
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.52
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.52
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.52
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.51
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.51
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.5
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.5
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.5
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.5
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.5
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.49
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.49
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.49
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.49
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.49
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.48
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.48
KOG0613|consensus	1205		99.47
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.47
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.47
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.47
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.47
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.47
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.46
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.46
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.46
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.46
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.46
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.46
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.46
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.45
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.45
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.45
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.45
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.45
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.44
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.44
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.44
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.44
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.43
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.43
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.43
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.43
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.43
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.42
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.42
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.42
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.42
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.41
KOG0196|consensus	996		99.41
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.41
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.41
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.4
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.4
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.39
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.39
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.39
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.39
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.38
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.38
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.38
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.37
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.37
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.37
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.36
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.36
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.36
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.36
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.36
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.36
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.35
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.35
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.35
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.34
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.34
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.34
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.33
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.32
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.31
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.31
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.31
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.31
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.3
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.3
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.3
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.3
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.29
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.29
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.29
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.28
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.28
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.28
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.28
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.28
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.27
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.26
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.24
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.24
smart00409	86	IG Immunoglobulin.	99.24
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.24
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.24
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.23
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.23
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.23
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.22
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.22
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.2
KOG0196|consensus	996		99.18
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.17
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.17
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.16
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.16
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.14
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.14
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.14
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.13
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.13
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.13
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.13
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.13
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.13
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.12
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.11
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.09
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.08
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.05
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.03
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.02
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.02
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.0
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.0
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.0
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.0
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.98
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.95
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.93
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.91
PHA03376	221	BARF1; Provisional	98.91
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.89
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.87
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.86
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.85
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.85
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.84
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.84
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.82
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.82
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.82
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.82
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.81
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.81
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.81
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.79
smart00409	86	IG Immunoglobulin.	98.78
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.78
KOG4258|consensus	1025		98.78
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.77
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.77
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.77
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.76
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.75
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.75
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.74
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.74
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.74
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.72
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.72
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.71
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.71
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.71
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.71
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.69
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.66
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	98.64
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.64
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.61
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.6
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.59
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.59
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.57
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.57
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.57
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.57
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.54
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.52
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.51
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.51
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.5
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.48
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.47
KOG0613|consensus	1205		98.45
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.45
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.44
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.43
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.42
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.42
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.41
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.4
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.39
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.38
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.38
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.36
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.36
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.36
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.33
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.31
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.31
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.31
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.3
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.26
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.26
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	98.26
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.25
PHA03376	221	BARF1; Provisional	98.25
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.21
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.2
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.2
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.19
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.12
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.11
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.09
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.09
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.03
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.03
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.03
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.0
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.0
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.0
KOG4802|consensus	516		97.98
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.95
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.95
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.93
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.92
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.91
smart00407	75	IGc1 Immunoglobulin C-Type.	97.9
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.89
PHA03271	490	envelope glycoprotein C; Provisional	97.88
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.86
KOG4367|consensus	699		97.84
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.83
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.82
smart00406	81	IGv Immunoglobulin V-Type.	97.81
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.78
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.78
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.76
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.75
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.74
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.73
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.71
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.71
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.7
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.69
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.69
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.66
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.66
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.64
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.63
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.62
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	97.58
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.58
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.57
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.46
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.46
PHA03270	466	envelope glycoprotein C; Provisional	97.46
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.43
PHA03273	486	envelope glycoprotein C; Provisional	97.43
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.42
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.41
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.4
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.4
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.4
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.39
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.39
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.31
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.3
PHA03269	566	envelope glycoprotein C; Provisional	97.27
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.25
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.25
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.21
smart00406	81	IGv Immunoglobulin V-Type.	97.16
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.15
smart00407	75	IGc1 Immunoglobulin C-Type.	97.14
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.14
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.13
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.13
PHA02633	63	hypothetical protein; Provisional	97.1
KOG4802|consensus	516		97.05
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	96.99
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.98
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.95
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.92
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.9
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.87
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.83
PHA02982	251	hypothetical protein; Provisional	96.8
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.79
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.76
PHA02982	251	hypothetical protein; Provisional	96.75
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.73
KOG4258|consensus	1025		96.67
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.57
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	96.54
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.49
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.45
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	96.44
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.43
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.41
KOG4367|consensus	699		96.34
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.27
KOG4152|consensus	830		96.22
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.19
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.13
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.12
KOG1480|consensus	909		96.11
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.98
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.88
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	95.87
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	95.86
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.8
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.78
PHA03052	69	Hypothetical protein; Provisional	95.76
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	95.68
PHA02914	500	Immunoglobulin-like domain protein; Provisional	95.5
PHA03270	466	envelope glycoprotein C; Provisional	95.44
KOG4597|consensus	560		95.35
PHA02633	63	hypothetical protein; Provisional	95.13
PHA03042	286	CD47-like protein; Provisional	95.04
KOG1480|consensus	909		95.04
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	94.6
PHA03271	490	envelope glycoprotein C; Provisional	94.44
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	94.35
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.32
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.22
KOG4597|consensus	560		94.01
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	93.53
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	93.21
PHA03273	486	envelope glycoprotein C; Provisional	93.1
COG4733	952	Phage-related protein, tail component [Function un	93.09
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	92.93
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	92.82
PHA02914	500	Immunoglobulin-like domain protein; Provisional	92.7
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	92.64
KOG4152|consensus	830		92.44
PHA03042	286	CD47-like protein; Provisional	92.3
KOG1026|consensus	774		92.02
PHA03189	348	UL14 tegument protein; Provisional	91.91
PLN02533	427	probable purple acid phosphatase	91.54
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	91.34
PHA03269	566	envelope glycoprotein C; Provisional	90.9
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	90.35
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	90.18
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	89.95
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	89.9
COG4733	952	Phage-related protein, tail component [Function un	88.74
PRK14081	667	triple tyrosine motif-containing protein; Provisio	87.68
PF11141	66	DUF2914: Protein of unknown function (DUF2914); In	87.17
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	86.73
PHA02865	338	MHC-like TNF binding protein; Provisional	86.31
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	82.4
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	80.36
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	80.13

>KOG3513|consensus

Probab=100.00  E-value=2.3e-58  Score=441.32  Aligned_cols=547  Identities=23%  Similarity=0.290  Sum_probs=401.4

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccC-CCCceEEEEEEEcCCeee-EEEEEEEEecCCC
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR-KEDAGDYTVNLSNSSGSV-SGTFTINITGLPG   90 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~n~~g~~-~~~~~l~v~~~p~   90 (591)
                      +.|.|.+.|+|.|+++|+|||..+......++...++  +|.|.+.. ..|.|.|+|.|.|..|.. +..+.|.....+.
T Consensus        60 v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G--~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~  137 (1051)
T KOG3513|consen   60 VTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVLGG--TLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPK  137 (1051)
T ss_pred             EEEEEEecCCCCceeEEEECCeecccccccceeeecC--ceEecCCcchhhcceeEEEeecccceeeccceeeccccccc
Confidence            9999999999999999999999887664444444433  67788777 789999999999999998 5568888888777


Q ss_pred             CCCCCc-ceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEE--EEeecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425         91 PPIGPL-DVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC--ISTTCHDTTFIVQGLTEGQEYLFHVMAVN  167 (591)
Q Consensus        91 ~p~~~~-~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~y~~~~~a~n  167 (591)
                      .+.... .+....+..+.|.|.||.   +.+-..|.+-...........  -........+-+..+...+...|.|.|.+
T Consensus       138 F~~e~~~~v~v~eG~~~~L~C~pP~---~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~  214 (1051)
T KOG3513|consen  138 FKKEERSPVEVEEGDGVVLPCNPPA---HFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATF  214 (1051)
T ss_pred             CccccCCcEEEEeCCceEEeCCCCC---CCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEc
Confidence            664322 345567888999999988   333334444332221111000  11234566788888888888999999987


Q ss_pred             cCCCCCCCCccCcccc-cCC---CCCCCCCCC--CeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEe
Q psy12425        168 ENGMGPPLEGINPIKA-KSP---YDKPSPPGI--PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV  241 (591)
Q Consensus       168 ~~g~~~~~~~~~~~~~-~~~---~~~p~~~~~--~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~  241 (591)
                      ..-..........+.. ...   ...|..+..  .......|..+.|.|.+-..+- ..+.++     ..+...+..-..
T Consensus       215 ~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~-P~i~W~-----k~~g~~~~~r~~  288 (1051)
T KOG3513|consen  215 PSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPT-PQIKWR-----KVDGKPPPRRAT  288 (1051)
T ss_pred             hhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCC-CcEEEE-----eCCCCCCCccee
Confidence            4322111111111111 000   011111111  1566678999999999853222 122222     223323333333


Q ss_pred             eecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCC
Q psy12425        242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK  321 (591)
Q Consensus       242 ~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~  321 (591)
                      .......|.|.++..+|+|.|+|.|.|..|..   .....+.+.     .+|.++..+++..+..|+++.|.|.+.|.|.
T Consensus       289 ~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~---~~~~~v~v~-----a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~  360 (1051)
T KOG3513|consen  289 YSNYGKVLKIPNVQYEDAGEYECIAENSRGSA---THSGHVTVY-----APPYWLQKPQDTEADTGSNVTLECKASGKPN  360 (1051)
T ss_pred             eeccccEEEecccCcCCCeEEEEEEecccccc---eeeEEEEEe-----cCchhhcccceeEecCCCCeEEEEEecCCCC
Confidence            34456789999999999999999999999843   245566665     6899999999999999999999999999999


Q ss_pred             CeeEEecCCccCCCCCc---eEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecC-CcccCCCCcccc
Q psy12425        322 PTISWLKGSREITPSAR---HHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA-PKFNVPPRFRDT  397 (591)
Q Consensus       322 ~~v~W~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~-p~~~~~~~~~~~  397 (591)
                      |.+.|++||..+....+   +.+ .+|   .|+|.++...|+|.|.|.|+|..|.....+.|.|... |.+... .....
T Consensus       361 p~v~WlkNg~pl~~~~r~~~~~i-~~g---~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~-p~~~~  435 (1051)
T KOG3513|consen  361 PTVKWLKNGEPLEPAERDPRYKI-DDG---TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLN-PVERK  435 (1051)
T ss_pred             CceEEeeCCeecCccCCCcceEE-eCC---EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCC-ccceE
Confidence            99999999999886665   544 333   7999999999999999999999999999999999987 554443 34455


Q ss_pred             eeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCC---------
Q psy12425        398 AYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG---------  468 (591)
Q Consensus       398 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g---------  468 (591)
                      ..+..|..+.+.|...+.|.|.++|.+++..+..++++.+..   ..+|.|.+++.+|+|.|+|.|.|..|         
T Consensus       436 ~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e---dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~  512 (1051)
T KOG3513|consen  436 VMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE---DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLI  512 (1051)
T ss_pred             EEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC---CCcEEecccCcccCcEEEEEEEcccCccceEEEEE
Confidence            667899999999999999999999999988666667776653   33444444444444444444444444         


Q ss_pred             --------------------------------------------------------------------------------
Q psy12425        469 --------------------------------------------------------------------------------  468 (591)
Q Consensus       469 --------------------------------------------------------------------------------  468 (591)
                                                                                                      
T Consensus       513 Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y  592 (1051)
T KOG3513|consen  513 VKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKY  592 (1051)
T ss_pred             EecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceE
Confidence                                                                                            


Q ss_pred             ---------ccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec--eeee-
Q psy12425        469 ---------MDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG--NTRF-  536 (591)
Q Consensus       469 ---------~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~--~~~~-  536 (591)
                               +.+..+.+.|.++|.||.++.+...+.+++.|+|++.. |+.++|..|.++.+......|+.+.  .... 
T Consensus       593 ~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~-dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~  671 (1051)
T KOG3513|consen  593 TCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGS-DNNSPIEKYTIQFRTPFPGKWKAVTTVPGNIT  671 (1051)
T ss_pred             EEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCC-CCCCCceEEeEEecCCCCCcceEeeECCCccc
Confidence                     44444455556788999999999999999999999655 6667899999999999889998773  1111 


Q ss_pred             --eEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCCCCce
Q psy12425        537 --TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPIS  587 (591)
Q Consensus       537 --~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~~~  587 (591)
                        .+.++.+|.|...|+|||+|.|.+|.|++|.++..++|.+++|...|.++.
T Consensus       672 ~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~  724 (1051)
T KOG3513|consen  672 GDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVK  724 (1051)
T ss_pred             CccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCcccc
Confidence              357788999999999999999999999999999999999999999887663

>KOG3513|consensus

Probab=100.00  E-value=4.4e-45  Score=350.53  Aligned_cols=556  Identities=20%  Similarity=0.242  Sum_probs=380.9

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      +|.++....|+.+.|.|.+.|+|.|+|.|+|.+... ...+....  ....+|.|.+++.+|+|.|+|.|.|..|.....
T Consensus       247 ~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~-~~~r~~~~--~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~  323 (1051)
T KOG3513|consen  247 FPETETALKGQSVKLECFALGNPTPQIKWRKVDGKP-PPRRATYS--NYGKVLKIPNVQYEDAGEYECIAENSRGSATHS  323 (1051)
T ss_pred             CCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCC-CCcceeee--ccccEEEecccCcCCCeEEEEEEecccccceee
Confidence            366788999999999999999999999999987742 22233332  334589999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCC-ceEEEEeecCcceEEEcCCcCCcEE
Q psy12425         81 FTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP-HWICISTTCHDTTFIVQGLTEGQEY  159 (591)
Q Consensus        81 ~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~y  159 (591)
                      +.|.|...|.....+..+....+..+++.|...    |.+-..|.+........ .-..-........+.|.+|+..+.+
T Consensus       324 ~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~----g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg  399 (1051)
T KOG3513|consen  324 GHVTVYAPPYWLQKPQDTEADTGSNVTLECKAS----GKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSG  399 (1051)
T ss_pred             EEEEEecCchhhcccceeEecCCCCeEEEEEec----CCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCe
Confidence            999999999888776677777888999999743    33444454433321111 0000012346678999999999999


Q ss_pred             EEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEE
Q psy12425        160 LFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV  239 (591)
Q Consensus       160 ~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~  239 (591)
                      .|+|.|.|..|..-.+....+...  .+..+..|..-.+....+..+.|.|.+-..+.  +.    +.+...+...-...
T Consensus       400 ~YQC~A~Nk~G~i~anA~L~V~a~--~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~--p~----~~W~k~~~~~~~~~  471 (1051)
T KOG3513|consen  400 VYQCIAENKYGTIYANAELKVLAS--APVFPLNPVERKVMAVVGGTVTIDCKPFASPK--PK----VSWLKGGEKLLQSG  471 (1051)
T ss_pred             EEEeeeecccceEeeeeEEEEEcc--CCCCCCCccceEEEEEeCCeEEEeeccCCCCc--ce----EEEEcCCcccccCc
Confidence            999999999998666554333322  12334444555667778899999999743222  11    22222222111112


Q ss_pred             EeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC
Q psy12425        240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC  319 (591)
Q Consensus       240 ~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~  319 (591)
                      ......+++|.|.+++.+|+|.|+|.|.|..|...   ....+.+.     .++.+...++...+..|+.+.|.|++.-.
T Consensus       472 r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~---~~~~L~Vk-----d~tri~~~P~~~~v~~g~~v~l~Ce~shD  543 (1051)
T KOG3513|consen  472 RIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAE---STGNLIVK-----DATRITLAPSNTDVKVGESVTLTCEASHD  543 (1051)
T ss_pred             eEEECCCCcEEecccCcccCcEEEEEEEcccCccc---eEEEEEEe-----cCceEEeccchhhhccCceEEEEeecccC
Confidence            23334678999999999999999999999999764   44555665     57888888899999999999999999755


Q ss_pred             C--CCeeEEecCCccCCCC---CceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCC-
Q psy12425        320 P--KPTISWLKGSREITPS---ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR-  393 (591)
Q Consensus       320 p--~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~-  393 (591)
                      +  ...+.|.++|..+...   ..+......+...|+|.++...|+|.|.|+|.......+..+.+.|..+|..+.... 
T Consensus       544 ~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~  623 (1051)
T KOG3513|consen  544 PSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHV  623 (1051)
T ss_pred             CCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeE
Confidence            4  4578999999866432   233332222224699999999999999999998777777778888876653221000 


Q ss_pred             ------------------------------------cccceee---cCCC------------eEEEEEee-----eccCC
Q psy12425        394 ------------------------------------FRDTAYF---DKGE------------NVVVKIPF-----TGYPK  417 (591)
Q Consensus       394 ------------------------------------~~~~~~~---~~g~------------~~~l~c~~-----~~~p~  417 (591)
                                                          +.....+   ..|+            .-.|+..+     .|.|.
T Consensus       624 ~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS  703 (1051)
T KOG3513|consen  624 DDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPS  703 (1051)
T ss_pred             eeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCC
Confidence                                                0000000   1111            11122221     12222


Q ss_pred             C-----------------------------eEEEeeCCeEeee--ccceEEEe---------------cCCeeEEEEec-
Q psy12425        418 P-----------------------------KITWYRDNEVIES--GGHFHVET---------------SERHAILTIRD-  450 (591)
Q Consensus       418 ~-----------------------------~v~W~~~~~~~~~--~~~~~~~~---------------~~~~~~l~i~~-  450 (591)
                      +                             .|+|.--......  +-.|.+..               +-+...+.+.+ 
T Consensus       704 ~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~  783 (1051)
T KOG3513|consen  704 PPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNE  783 (1051)
T ss_pred             CCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCC
Confidence            2                             3455321110011  11122111               11123444443 


Q ss_pred             -cCCCcceeEEEEEEcCCCccceEEEEEec----CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC
Q psy12425        451 -ASNVDTAPYRVVAENDLGMDSAIVKIQIS----DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM  525 (591)
Q Consensus       451 -~~~~~~g~y~c~a~n~~g~~~~~~~~~v~----~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~  525 (591)
                       ..+...+..++.|.|..|.+..+..+.+.    .||.+|..+.+...+.+.+.|+|++|..++| .+++|+|.|.....
T Consensus       784 st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~~~~~nG-~l~gY~v~Y~~~~~  862 (1051)
T KOG3513|consen  784 STEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKPPLWDNG-KLTGYEVKYWKINE  862 (1051)
T ss_pred             CCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecCcCccCC-ccceeEEEEEEcCC
Confidence             44477889999999999999766666554    4678999999999999999999999888884 88999999987654


Q ss_pred             Cce---EEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccC
Q psy12425        526 SSW---IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSG  581 (591)
Q Consensus       526 ~~~---~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~  581 (591)
                      ..-   ......+.++..|.||.+++.|.|.|+|.|.+|.|++|..... +|..++|+.
T Consensus       863 ~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~-tt~k~pPs~  920 (1051)
T KOG3513|consen  863 KEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENV-TTKKAPPSQ  920 (1051)
T ss_pred             CcccccceeecCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccceec-cccCCCCcc
Confidence            321   1112367789999999999999999999999999999987655 666667775

>KOG4221|consensus

Probab=100.00  E-value=1.9e-42  Score=330.66  Aligned_cols=553  Identities=18%  Similarity=0.224  Sum_probs=383.1

Q ss_pred             eecCCeEEEEEEeccC--CCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCC-----CCceEEEEEEEcC-Ceee-
Q psy12425          7 IPEGDNTKVKIFYAGD--QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK-----EDAGDYTVNLSNS-SGSV-   77 (591)
Q Consensus         7 v~~G~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-----~d~g~Y~c~~~n~-~g~~-   77 (591)
                      +.+|..+.|.|.+...  +.+.|.|.|||..+......+.....++ +|.|.++..     -|+|.|+|.|.-. .|+. 
T Consensus        51 ~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg-Sl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~  129 (1381)
T KOG4221|consen   51 AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG-SLYISSVLASKHNKVDEGVYQCLATVEDVGSIL  129 (1381)
T ss_pred             cccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCC-ceeEeeecccccccccCceEEEEEEccccceee
Confidence            3789999999998543  4789999999988766522222222222 677777776     7899999999866 4554 


Q ss_pred             EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCc
Q psy12425         78 SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ  157 (591)
Q Consensus        78 ~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~  157 (591)
                      +..+.|.+...+..-..+.......+.++.+.|..-.    .+...-.+...+. -..|..-.....+..+.|.++++++
T Consensus       130 Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~----e~~p~i~w~kn~~-pl~~~~r~i~lpsG~L~I~~~qp~d  204 (1381)
T KOG4221|consen  130 SRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNA----EPVPTIMWLKNDQ-PLPLDSRVIVLPSGALEISGLQPSD  204 (1381)
T ss_pred             cceEEEEecccCccccCccceeEecCCcEEEEEEEcC----ccCceeEEecccc-cccCCCcEEEcCCCcEEecccccCC
Confidence            5668888888777766666777778888888885322    2222111111111 0112111113456789999999999


Q ss_pred             EEEEEEEEEccCCCCCCCCccCcccccCCC-----CCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecC
Q psy12425        158 EYLFHVMAVNENGMGPPLEGINPIKAKSPY-----DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG  232 (591)
Q Consensus       158 ~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~  232 (591)
                      .|.|||.+.+...... +..........+.     ..+..|  -......|+.+.|.|.....+.  +...|........
T Consensus       205 ~g~yrc~vt~g~~~r~-S~~a~ltv~s~~~~~~~~~fl~~p--~~~~v~~g~~v~leCvvs~~p~--p~v~Wlrng~~i~  279 (1381)
T KOG4221|consen  205 TGEYRCVVTGGASQRT-SNEAELTVLSDPGALNKLVFLDEP--SNAVVVEGDDVVLECVVSGVPK--PSVKWLRNGEKIS  279 (1381)
T ss_pred             CceEEEEEecCCcCCc-cceeEEEecCCcccccceeeecCC--CccccccCCcEEEEEEecCCCC--CceEEeeCCeeee
Confidence            9999999997544332 2221111111110     011111  1234456888999998754332  2333332222221


Q ss_pred             CCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEE
Q psy12425        233 SDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQF  312 (591)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l  312 (591)
                      -..   ..........|.|.+++..|.|.|+|+|.|.....   ..+..+++.     .+|.+...+....+.++..+.|
T Consensus       280 ~ds---~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~i---dasaev~V~-----a~P~~~~~p~~l~A~e~~die~  348 (1381)
T KOG4221|consen  280 VDS---YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSI---DASAEVTVL-----APPGFTKAPTTLVAHESMDIEF  348 (1381)
T ss_pred             ecc---eEEEEecccceEEeccccccCceEEEEecCCCccc---ccceEEEEE-----cCCCCCCCCcceeeeeccceeE
Confidence            111   11222346789999999999999999999843322   244556665     5688888888888999999999


Q ss_pred             EEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCC-
Q psy12425        313 QCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP-  391 (591)
Q Consensus       313 ~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~-  391 (591)
                      .|.+.|.|.+.+.|+|+|..+..++..++...+.   |.|..+...|.|.|.|.+.|..|.....+.+.+...|..... 
T Consensus       349 ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~  425 (1381)
T KOG4221|consen  349 ECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSD  425 (1381)
T ss_pred             eCCCCCCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccC
Confidence            9999999999999999998887766666654442   899999999999999999999999998888877655433211 


Q ss_pred             --CCcccceeecCCCeEEEEEeee-----ccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEE
Q psy12425        392 --PRFRDTAYFDKGENVVVKIPFT-----GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAE  464 (591)
Q Consensus       392 --~~~~~~~~~~~g~~~~l~c~~~-----~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~  464 (591)
                        +.......+..-+..-+.|.+.     +.+.+.++|+........ .+. +........+++.++++...|.++|.|.
T Consensus       426 ~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~r-er~-~~tss~g~~~tv~nl~p~t~Y~~rv~A~  503 (1381)
T KOG4221|consen  426 LLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVR-ERL-QNTSSPGIQVTVQNLSPLTMYFFRVRAK  503 (1381)
T ss_pred             ccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchh-hhh-eeccCCceEEEeeecccceeEEEEEecc
Confidence              1112233333344444445443     344557777664322211 111 1122223778899999999999999999


Q ss_pred             cCCCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCc
Q psy12425        465 NDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGL  544 (591)
Q Consensus       465 n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l  544 (591)
                      |..|....+..+.|..+|++|..+++...+..++.+.|++|.+.+ ++|++|++.|...+.+.|..+.+ +...++|++|
T Consensus       504 n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n-~~I~~yk~~ys~~~~~~~~~~~~-n~~e~ti~gL  581 (1381)
T KOG4221|consen  504 NEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGN-GPITGYKLFYSEDDTGKELRVEN-NATEYTINGL  581 (1381)
T ss_pred             CcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCC-CCceEEEEEEEcCCCCceEEEec-CccEEEeecC
Confidence            999999999999999999888778888889999999999997655 49999999999886677666543 4479999999


Q ss_pred             ccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCCCCceee
Q psy12425        545 SPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISLI  589 (591)
Q Consensus       545 ~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~~~~~  589 (591)
                      .+.+.|.|+|+|.|++|.|..|....+ .|....|+.||.++.+.
T Consensus       582 ~k~TeY~~~vvA~N~~G~g~sS~~i~V-~Tlsd~PsaPP~Nl~le  625 (1381)
T KOG4221|consen  582 EKYTEYSIRVVAYNSAGSGVSSADITV-RTLSDVPSAPPQNLSLE  625 (1381)
T ss_pred             CCccceEEEEEEecCCCCCCCCCceEE-EeccCCCCCCCcceEEE
Confidence            999999999999999999999998755 66667999999888875

>KOG4222|consensus

Probab=100.00  E-value=2.3e-42  Score=328.04  Aligned_cols=547  Identities=22%  Similarity=0.310  Sum_probs=381.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC--CceeEEEeCCe-EEEEEcc--cCCCCceEEEEEEEcCCee
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD--DRFKFTVLDDY-IIIFIKE--IRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~-~~l~i~~--~~~~d~g~Y~c~~~n~~g~   76 (591)
                      |.++.|..|+.++|.|.+.|.|+|++.|+|+|+.+..+  ...++...+.. .-|.+..  ....|.|.|.|.+.|..|.
T Consensus        38 p~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~  117 (1281)
T KOG4222|consen   38 PHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGE  117 (1281)
T ss_pred             chhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccce
Confidence            66788999999999999999999999999999755443  22233332221 2222211  1123899999999999998


Q ss_pred             eEE-EEEEEEecCCC-CCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCce---EEEEeecCcceEEEc
Q psy12425         77 VSG-TFTINITGLPG-PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW---ICISTTCHDTTFIVQ  151 (591)
Q Consensus        77 ~~~-~~~l~v~~~p~-~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~---~~~~~~~~~~~~~i~  151 (591)
                      .-+ ...|.+...++ .-..|..+....+..+.+.|.+|.   +.+..  .+.|...+...+   ...........+.|.
T Consensus       118 avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~---ghpep--tvSw~Kdg~pl~~~~~~~~~lisgG~LlIs  192 (1281)
T KOG4222|consen  118 AVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPR---GHPEP--TVSWVKDGKPLDHYDVPIIALISGGNLLIS  192 (1281)
T ss_pred             eeecCceEEEEEechhcccCcccccccccceeEEeccCCC---CCCCC--cceeecCCCccccccceeEEEecCCcEEEe
Confidence            733 35555554443 233445567778899999999877   22221  112222222222   111224567889999


Q ss_pred             CCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeec
Q psy12425        152 GLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEV  231 (591)
Q Consensus       152 ~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~  231 (591)
                      +++..+.+.|.|.+.|..|.-.......  ........-..|....+.  -+..+.+.|.....+.  +-..+.-   ..
T Consensus       193 nvrksD~GtY~CVatNmvG~ReS~~A~l--sv~e~P~f~~rp~~~~v~--~g~~~~f~c~v~GdP~--P~Vrwkk---~~  263 (1281)
T KOG4222|consen  193 NVRKSDEGTYACVATNMVGERESIPARL--SVQEKPWFWKRPKDLAVL--VGAAAEFDCRVGGDPQ--PTVRWKK---DD  263 (1281)
T ss_pred             ccccCCCceeeeeeccccccccccccee--eeccCCccccccccceee--cccccccccccCCCCC--Cceeeec---cC
Confidence            9999999999999999999755543221  111111122222222221  2223555555432221  1111100   11


Q ss_pred             CCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEE
Q psy12425        232 GSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQ  311 (591)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  311 (591)
                      +.....+.. ...+..++.|....+.|+|.|.|.|.|..|.-..   ...+++.     .+|.+...+.+..+..|..++
T Consensus       264 ~~~P~~ry~-i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~a---sa~ltV~-----apP~f~kkp~dq~v~lg~~vt  334 (1281)
T KOG4222|consen  264 PSLPRSRYS-ILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEA---SATLTVQ-----APPSFGKKPRDQKVALGGTVT  334 (1281)
T ss_pred             CCCCcccee-eeeccccccccccCCCcccceeeecccccccccc---ccceEEe-----cCcccccccCccccccCceEE
Confidence            111111111 1224478899999999999999999999987653   3445554     688898888888899999999


Q ss_pred             EEEEEcCCCCCeeEEecCCccCC--------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        312 FQCTITGCPKPTISWLKGSREIT--------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       312 l~c~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      |.|.+.|.|.|.+.|.+.+....        ...+..+...+   +|+|.+++..|.|.|.|...+..|.......+.+.
T Consensus       335 ~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt  411 (1281)
T KOG4222|consen  335 FPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQT  411 (1281)
T ss_pred             eeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEEEE
Confidence            99999999999999998765332        22334444444   79999999999999999999988887665555554


Q ss_pred             cC------C-cccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcc
Q psy12425        384 TA------P-KFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDT  456 (591)
Q Consensus       384 ~~------p-~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~  456 (591)
                      ..      | .+...+   ...++..+..+.|.|.+.+.|.+.+.|++++..+...+.....  .....|.|.++...|.
T Consensus       412 ~~~~~~rPpp~i~~g~---~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~--~~~~~l~i~dl~~~Dt  486 (1281)
T KOG4222|consen  412 DVLTDSRPPPIIEQGP---ANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQ--QEIGSLRIRDLKGPDT  486 (1281)
T ss_pred             eeeccCCCCceeeecc---cccccccCcccccChhhhCCCCCCchhhhcccccccCCcccce--eeeceeeeeeeecCCC
Confidence            32      1 122222   2344566899999999999999999999999887654432222  2357899999999999


Q ss_pred             eeEEEEEEcCCCccceEEEEEecC---------------CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEee
Q psy12425        457 APYRVVAENDLGMDSAIVKIQISD---------------RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKR  521 (591)
Q Consensus       457 g~y~c~a~n~~g~~~~~~~~~v~~---------------~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~  521 (591)
                      |.|+|.|.+..|+.+.++.+.|.+               .|++|....+..++.++++|+|.+....++.++.+|++++.
T Consensus       487 G~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieaf  566 (1281)
T KOG4222|consen  487 GRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAF  566 (1281)
T ss_pred             cceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHh
Confidence            999999999999999999988863               35677777888999999999999866556788999999876


Q ss_pred             eC-CCCceEEe-ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccc
Q psy12425        522 EH-PMSSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELL  579 (591)
Q Consensus       522 ~~-~~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p  579 (591)
                      .. -...|... .....+.+.|.+|.|++.|.|.|+|.|..|.+.+|..+..+++.++.+
T Consensus       567 s~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~  626 (1281)
T KOG4222|consen  567 SPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADA  626 (1281)
T ss_pred             hhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCCh
Confidence            44 45778776 567778999999999999999999999999999999888877776544

>KOG4221|consensus

Probab=100.00  E-value=1.9e-39  Score=310.23  Aligned_cols=533  Identities=17%  Similarity=0.232  Sum_probs=367.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.+.++.+|+.+.|+|.+.|.|.|+|.|.|||+.|..+. +++...+. ..|.|.+++..|+|.|+|+|.|..-...++.
T Consensus       244 p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~g~-~slliS~a~~~dSg~YtC~Atn~~D~idasa  321 (1381)
T KOG4221|consen  244 PSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLVGG-SSLLISNATDDDSGKYTCRATNTNDSIDASA  321 (1381)
T ss_pred             CCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEecc-cceEEeccccccCceEEEEecCCCcccccce
Confidence            678899999999999999999999999999999998776 56655543 3899999999999999999999877888899


Q ss_pred             EEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEec--CCCceEEEEeecCcceEEEcCCcCCcEE
Q psy12425         82 TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI--SMPHWICISTTCHDTTFIVQGLTEGQEY  159 (591)
Q Consensus        82 ~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~y  159 (591)
                      .|+|..+|..+..|..........+.+.|...    +.++..+.+.....  ....|.++..   ...+.|.++-..+.+
T Consensus       322 ev~V~a~P~~~~~p~~l~A~e~~die~ec~~~----g~p~p~v~w~kNgd~~ipsdy~ki~~---~~~lrIlgi~~sdeg  394 (1381)
T KOG4221|consen  322 EVTVLAPPGFTKAPTTLVAHESMDIEFECPVS----GKPIPTVRWYKNGDRIIPSDYFKIVG---GGNLRILGIVKSDEG  394 (1381)
T ss_pred             EEEEEcCCCCCCCCcceeeeeccceeEeCCCC----CCCcceEEEEecCcccCcccceEecC---CCCcEEEEEecccch
Confidence            99999999999988777776666677776532    23555555544321  1234554432   222777777778888


Q ss_pred             EEEEEEEccCCCCCCCCccCccccc---CCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCcc
Q psy12425        160 LFHVMAVNENGMGPPLEGINPIKAK---SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAW  236 (591)
Q Consensus       160 ~~~~~a~n~~g~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~  236 (591)
                      .|.|.+.|..|..........+...   .....|..|..+.+...+...+.++|..|. ..+..+..|.+.+..... .|
T Consensus       395 ~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~-~~~g~i~~~~v~~~~~~~-~r  472 (1381)
T KOG4221|consen  395 FYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPA-QISGNISTYTVFYKVEGD-VR  472 (1381)
T ss_pred             hhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCcc-ccCCCcceEEEEEecCCc-hh
Confidence            9999999999876554433222211   112345556666677777888999999877 445567778877776544 33


Q ss_pred             EEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEE
Q psy12425        237 QRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI  316 (591)
Q Consensus       237 ~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~  316 (591)
                      .+...........++.+|.+...|.|+|.|.|..|.+..+   ..+.+..+..  +|..        ...+..-.++|.+
T Consensus       473 er~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS---~pLkV~t~pE--gp~~--------~~a~ats~~ti~v  539 (1381)
T KOG4221|consen  473 ERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESS---APLKVTTQPE--GPVQ--------LQAYATSPTTILV  539 (1381)
T ss_pred             hhheeccCCceEEEeeecccceeEEEEEeccCcccCCccC---CceEEecCCC--CCcc--------ccccccCcceEEE
Confidence            3433333333788999999999999999999999988644   3333332221  2211        2333444556666


Q ss_pred             cCCCCC----eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCC
Q psy12425        317 TGCPKP----TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP  392 (591)
Q Consensus       317 ~~~p~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~  392 (591)
                      .+.|++    .|.|++....... ....+..+.+..+++|.++.+.+.|.|.|+|.|..|.+..+..+.|......+..|
T Consensus       540 ~WepP~~~n~~I~~yk~~ys~~~-~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaP  618 (1381)
T KOG4221|consen  540 TWEPPPFGNGPITGYKLFYSEDD-TGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAP  618 (1381)
T ss_pred             EecCCCCCCCCceEEEEEEEcCC-CCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCC
Confidence            666655    7889885444332 22334444555689999999999999999999999999999999988766655444


Q ss_pred             CcccceeecCCCeEEEEEeeeccCCCeEEEee------CCeEee---------eccceEEE-ecCCeeEEEEeccCCCcc
Q psy12425        393 RFRDTAYFDKGENVVVKIPFTGYPKPKITWYR------DNEVIE---------SGGHFHVE-TSERHAILTIRDASNVDT  456 (591)
Q Consensus       393 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~------~~~~~~---------~~~~~~~~-~~~~~~~l~i~~~~~~~~  456 (591)
                      ...            |+..+.......|.|.-      +|....         ....+.-. ...+...+.+.+|++...
T Consensus       619 P~N------------l~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~  686 (1381)
T KOG4221|consen  619 PQN------------LSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQ  686 (1381)
T ss_pred             Ccc------------eEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCce
Confidence            321            22222333334455532      222111         11111111 222456677888999999


Q ss_pred             eeEEEEEEcCCCccceEEEEEecCC--------CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCce
Q psy12425        457 APYRVVAENDLGMDSAIVKIQISDR--------PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW  528 (591)
Q Consensus       457 g~y~c~a~n~~g~~~~~~~~~v~~~--------p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~  528 (591)
                      |.+++.|.|..|.+..+..+...++        |.+|..+.+. ...+++.+.|.||...+ ..+.+|++.|++..+...
T Consensus       687 Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~-~g~~si~vsW~Pp~~~~-~~vrgY~ig~r~g~~~p~  764 (1381)
T KOG4221|consen  687 YRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHVH-PGSNSIVVSWTPPPHPN-IVVRGYKIGYRPGSGIPD  764 (1381)
T ss_pred             EEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeeec-cCceeEEEEeCCCCChh-hhhcceEEeeecccCCCC
Confidence            9999999999998877776666543        2344433333 36789999999986432 467899999975444332


Q ss_pred             --EEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEE
Q psy12425        529 --IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT  573 (591)
Q Consensus       529 --~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~  573 (591)
                        ..........|.|..|.++..|.++++|.|..|.|.+......++
T Consensus       765 ~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR  811 (1381)
T KOG4221|consen  765 TGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTR  811 (1381)
T ss_pred             CccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeec
Confidence              122455667999999999999999999999999999886654433

>KOG4222|consensus

Probab=100.00  E-value=4.2e-30  Score=245.26  Aligned_cols=562  Identities=18%  Similarity=0.193  Sum_probs=349.1

Q ss_pred             CceeeeecCCeEEEEEEe-ccCCCceEEEEECCEEeecCCceeEE-EeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFT-VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |+++.+..|+.+.|+|.- .|.|-+.|+|.|+|+++...+.-.+. ..++  .|.|.++...|+|.|.|++.|..|..++
T Consensus       138 prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG--~LlIsnvrksD~GtY~CVatNmvG~ReS  215 (1281)
T KOG4222|consen  138 PRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG--NLLISNVRKSDEGTYACVATNMVGERES  215 (1281)
T ss_pred             cccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC--cEEEeccccCCCceeeeeeccccccccc
Confidence            567889999999999975 67899999999999998743222222 2232  7999999999999999999999998855


Q ss_pred             E-EEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcE
Q psy12425         80 T-FTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQE  158 (591)
Q Consensus        80 ~-~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  158 (591)
                      . .+|+|.+.|..-..+.......+..+.+.|....    .+...-++.+....- .-....-..+..++.+....+.++
T Consensus       216 ~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~G----dP~P~Vrwkk~~~~~-P~~ry~i~~d~qtl~i~r~tp~de  290 (1281)
T KOG4222|consen  216 IPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGG----DPQPTVRWKKDDPSL-PRSRYSILDDTQTLRIDRVTPTDE  290 (1281)
T ss_pred             ccceeeeccCCccccccccceeecccccccccccCC----CCCCceeeeccCCCC-CccceeeeeccccccccccCCCcc
Confidence            4 9999999998766554444445555777775432    222222332211111 000011122336677888899999


Q ss_pred             EEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeec-CC---C
Q psy12425        159 YLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEV-GS---D  234 (591)
Q Consensus       159 y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~-~~---~  234 (591)
                      +.|-|.|.|..|.-..+..   .++..+...-..|..  ....-+..+++.|+....+.  +..-|..+.... ..   .
T Consensus       291 g~y~C~a~n~vG~l~asa~---ltV~apP~f~kkp~d--q~v~lg~~vt~pc~~~gnP~--PavfW~keg~q~llf~~~p  363 (1281)
T KOG4222|consen  291 GTYVCPAENLVGGLEASAT---LTVQAPPSFGKKPRD--QKVALGGTVTFPCETLGNPP--PAVFWLKEGSQDLLFSASP  363 (1281)
T ss_pred             cceeeeccccccccccccc---eEEecCcccccccCc--cccccCceEEeeeecCCCCC--cceEEeccCcceecccCCC
Confidence            9999999999987666543   222222211111211  12234667888888753322  222222211100 00   0


Q ss_pred             ccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEE
Q psy12425        235 AWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQC  314 (591)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c  314 (591)
                      .-............|+|.+++..|.|.|.|...+..|..........+.+.. ....+|.+...+.+.+...+..+.|.|
T Consensus       364 ~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~-~~rPpp~i~~g~~nQtl~v~s~a~l~c  442 (1281)
T KOG4222|consen  364 PSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLT-DSRPPPIIEQGPANQTLPVGSTASLPC  442 (1281)
T ss_pred             CCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeec-cCCCCceeeecccccccccCcccccCh
Confidence            0000111122345899999999999999999998888665432222222221 113466777777788888899999999


Q ss_pred             EEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcc------
Q psy12425        315 TITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF------  388 (591)
Q Consensus       315 ~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~------  388 (591)
                      .+.+.|.+.+.|.+++-.+..........  ..++|+|.++...|.|.|+|.|.+..|....++.|.|...-.-      
T Consensus       443 ~atg~P~p~i~wl~dg~~v~~~d~~~s~~--~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~  520 (1281)
T KOG4222|consen  443 SATGAPTPNISWLKDGCNVMNPDSRISQQ--EIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRC  520 (1281)
T ss_pred             hhhCCCCCCchhhhcccccccCCccccee--eeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccC
Confidence            99999999999999987776544322221  1237999999999999999999999999999999988653221      


Q ss_pred             ------cCCCCcccceee-cCCCeEEEEEeeecc--CCC----eEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCc
Q psy12425        389 ------NVPPRFRDTAYF-DKGENVVVKIPFTGY--PKP----KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD  455 (591)
Q Consensus       389 ------~~~~~~~~~~~~-~~g~~~~l~c~~~~~--p~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  455 (591)
                            +.++.  ....+ ..+..+.|.+.....  --|    .+..+-.+  + .......-..-..+...|+.+.+..
T Consensus       521 ~D~S~~pS~p~--~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~--~-~etw~~ta~~v~~t~~~I~gL~P~~  595 (1281)
T KOG4222|consen  521 EDPSALPSPPG--TPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPD--L-GETWQTTAGRVKTTTYAIRGLKPNL  595 (1281)
T ss_pred             CChhhCCCCCC--CCccccCCCceEEecccCCCCCCccccchhHHHHhhhh--h-cccccccccccccceeeecCcCccc
Confidence                  11111  11111 233444444432211  000    00000000  0 0001111112246788999999999


Q ss_pred             ceeEEEEEEcCCCccce-EEEEEecCCC-CCC---------------CCCe---eeeecCCeeEEEeeccccCCCcceee
Q psy12425        456 TAPYRVVAENDLGMDSA-IVKIQISDRP-DPP---------------QFPT---VEDIGHDSLALVWRAPIWDGGSNITN  515 (591)
Q Consensus       456 ~g~y~c~a~n~~g~~~~-~~~~~v~~~p-~~p---------------~~~~---~~~~~~~~v~l~W~~p~~~~~~~~~~  515 (591)
                      .|.+.|+|.|..|-+.- ...-.+...| ++.               ..++   ....+..++.+.|..+...+...|.+
T Consensus       596 sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g  675 (1281)
T KOG4222|consen  596 SYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQG  675 (1281)
T ss_pred             eeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecccCcccccc
Confidence            99999999999996521 1111122111 111               1111   22356788999999876555668899


Q ss_pred             EEEEeeeCCC--CceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCCcC---CCCCCCcceEEeccccccCCCCCc
Q psy12425        516 YIVEKREHPM--SSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVYGR---SDPSTTSDLITTYGELLSGMEAPI  586 (591)
Q Consensus       516 y~v~~~~~~~--~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~---~~~s~~~~~~~t~~~~p~~~~~~~  586 (591)
                      |+|.|+....  .+|...  -.....++.+.+|.|++.|+|.++-+-..|.   |.+|.... +.|.+++|+.++..+
T Consensus       676 ~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~-alt~e~~PSapp~~~  752 (1281)
T KOG4222|consen  676 YRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKT-ALTLEEPPSAPPQGV  752 (1281)
T ss_pred             eEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCccccc-ccccccCCCCCCCCc
Confidence            9999997654  344443  2334468889999999999999999888554   55565544 456667888887664

>KOG4194|consensus

Probab=99.93  E-value=2.3e-24  Score=192.92  Aligned_cols=222  Identities=21%  Similarity=0.432  Sum_probs=183.4

Q ss_pred             ceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEE
Q psy12425        247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW  326 (591)
Q Consensus       247 ~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W  326 (591)
                      ..+.+.++...++|.|+|.+.|..|......  ..+++.     ..|.|...|.+.+...|+...|.|.+.|.|.|.|.|
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk--~KltV~-----~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIaw  646 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQK--AKLTVN-----QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAW  646 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhhe--eEEEee-----ccCccccCcccceeecccceeeeeeccCCCCcceee
Confidence            4678999999999999999999999765433  444443     679999999999999999999999999999999999


Q ss_pred             ecCCcc-CCCC--CceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCC
Q psy12425        327 LKGSRE-ITPS--ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKG  403 (591)
Q Consensus       327 ~~~~~~-~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g  403 (591)
                      .|+|.. .+..  .+..+..+.+  .+.|.+++.+|.|.|+|.|.|.+|..+..+++.|...|.+..|.   ....+..|
T Consensus       647 qkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL---~~~~V~~g  721 (873)
T KOG4194|consen  647 QKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPL---EDQLVVVG  721 (873)
T ss_pred             hhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccc---cceEEEec
Confidence            997665 4433  3444444443  78999999999999999999999999999999999998877663   34556789


Q ss_pred             CeEEEEEeeeccCC-CeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        404 ENVVVKIPFTGYPK-PKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       404 ~~~~l~c~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      +++.|.|.+.+.|. |.+.|+|.+.++.-..+..+  .++..-|++.+...+|+|.|+|...|..|.....+.+.+...+
T Consensus       722 et~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f--~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~  799 (873)
T KOG4194|consen  722 ETLVLQCLAEGAPADPRLEWFKEDKPILITERHTF--PDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKK  799 (873)
T ss_pred             ceEEEEEecCCCCCCccccccCCCCceEEeecccC--CCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecC
Confidence            99999999999887 99999999988865443332  3467888999999999999999999999988777666665444

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.91  E-value=1.4e-21  Score=175.76  Aligned_cols=261  Identities=16%  Similarity=0.188  Sum_probs=164.0

Q ss_pred             eeeecCCeEEEEEEe-----ccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          5 LYIPEGDNTKVKIFY-----AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      ..+.+|+.+.|.|.+     .|.|.+++.|+|+|...   .+ .+ ...+...|.|.++..+|+|.|+|.+.|..|....
T Consensus        36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~-~~-~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~  110 (326)
T PHA02785         36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DR-II-PIDNGSNMLILNPTQSDSGIYICITKNETYCDMM  110 (326)
T ss_pred             hhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ce-EE-EccCCceEEEcccCcccCeEEEEEEECCCcceEE
Confidence            346789999999997     68889999999998532   11 12 2223346889999999999999999999988888


Q ss_pred             EEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEE
Q psy12425         80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY  159 (591)
Q Consensus        80 ~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  159 (591)
                      ++.|+|.....+...+               .           .|.                         ..+..+...
T Consensus       111 s~~L~V~~~~~~~~~~---------------~-----------~~~-------------------------~~~~~g~~~  139 (326)
T PHA02785        111 SLNLTIVSVSESNIDL---------------I-----------SYP-------------------------QIVNERSTG  139 (326)
T ss_pred             EEEEEEEecCCCccce---------------e-----------ecc-------------------------ceecccCcE
Confidence            8888887542110000               0           000                         001123334


Q ss_pred             EEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEE
Q psy12425        160 LFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV  239 (591)
Q Consensus       160 ~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~  239 (591)
                      .+.|......                              ...+..+.|+|....     .+          ..   .+.
T Consensus       140 ~i~C~~~~~~------------------------------~~~~~~~~i~W~k~~-----~~----------~~---~r~  171 (326)
T PHA02785        140 EMVCPNINAF------------------------------IASNVNADIIWSGHR-----RL----------RN---KRL  171 (326)
T ss_pred             EEECCChhhc------------------------------ccCCCCceEEEccCC-----cc----------CC---cce
Confidence            4555311000                              001222678886421     10          00   011


Q ss_pred             EeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC-CCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcC
Q psy12425        240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS-SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITG  318 (591)
Q Consensus       240 ~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~  318 (591)
                      .  ......|.|.++...|.|.|+|.|.|..|..... .....+.+..  ...+|.+.. +....+..|+.+.|.|.+.|
T Consensus       172 ~--~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~--~~~pp~~~~-p~~~~~~~G~~v~L~C~a~g  246 (326)
T PHA02785        172 K--QRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD--RIIPPTMQL-PEGVVTSIGSNLTIACRVSL  246 (326)
T ss_pred             E--ecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec--cCCCceecC-CCcEEecCCCcEEEEEEEEC
Confidence            1  1134679999999999999999999987643211 1122233322  234555433 35666778999999999999


Q ss_pred             CCCC---eeEEecCCccCCCCC-----ceEEEE-----eC---CeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        319 CPKP---TISWLKGSREITPSA-----RHHIFA-----EG---DTYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       319 ~p~~---~v~W~~~~~~~~~~~-----~~~~~~-----~~---~~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      .|.+   .+.|+++|..+....     ++....     ++   ....|.|.+++.+|.|.|+|.|.|..|..
T Consensus       247 ~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        247 RPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             CCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence            8864   799999998775421     222211     00   13479999999999999999999987443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.88  E-value=2.5e-20  Score=167.72  Aligned_cols=209  Identities=17%  Similarity=0.206  Sum_probs=143.0

Q ss_pred             ceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEE-----EcCCCC
Q psy12425        247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT-----ITGCPK  321 (591)
Q Consensus       247 ~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~-----~~~~p~  321 (591)
                      ..+.|.++...|+|.|+|.|.|..|...   .+..+++...   .+|.+.....+..+.+|..+.|.|.     ..+.|.
T Consensus        82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~---~s~~L~V~~~---~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~  155 (326)
T PHA02785         82 SNMLILNPTQSDSGIYICITKNETYCDM---MSLNLTIVSV---SESNIDLISYPQIVNERSTGEMVCPNINAFIASNVN  155 (326)
T ss_pred             ceEEEcccCcccCeEEEEEEECCCcceE---EEEEEEEEec---CCCccceeeccceecccCcEEEECCChhhcccCCCC
Confidence            3577889999999999999999876533   2334444321   1122221223344678999999997     246788


Q ss_pred             CeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeee----eEEEEec---CCcccCCCCc
Q psy12425        322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK----AELIIMT---APKFNVPPRF  394 (591)
Q Consensus       322 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~----~~l~v~~---~p~~~~~~~~  394 (591)
                      +.+.|+++.. + ...++.....   ..|.|.+++.+|.|.|+|.|.|..|.....    +.|.|..   +|.+..+   
T Consensus       156 ~~i~W~k~~~-~-~~~r~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p---  227 (326)
T PHA02785        156 ADIIWSGHRR-L-RNKRLKQRTP---GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLP---  227 (326)
T ss_pred             ceEEEccCCc-c-CCcceEecCC---CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCC---
Confidence            9999987542 2 2334333222   279999999999999999999988865432    3444432   2222222   


Q ss_pred             ccceeecCCCeEEEEEeeeccCCC---eEEEeeCCeEeeecc-----ceEEEec--------CCeeEEEEeccCCCccee
Q psy12425        395 RDTAYFDKGENVVVKIPFTGYPKP---KITWYRDNEVIESGG-----HFHVETS--------ERHAILTIRDASNVDTAP  458 (591)
Q Consensus       395 ~~~~~~~~g~~~~l~c~~~~~p~~---~v~W~~~~~~~~~~~-----~~~~~~~--------~~~~~l~i~~~~~~~~g~  458 (591)
                       ....+..|+.+.|.|.+.|.|.+   .+.|++||..+....     ++.....        .....|+|.+++.+|.|.
T Consensus       228 -~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~  306 (326)
T PHA02785        228 -EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATT  306 (326)
T ss_pred             -CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCee
Confidence             34556779999999999998864   899999998875321     2222111        014679999999999999


Q ss_pred             EEEEEEcCCCcc
Q psy12425        459 YRVVAENDLGMD  470 (591)
Q Consensus       459 y~c~a~n~~g~~  470 (591)
                      |+|.|.|..|..
T Consensus       307 Y~C~A~n~~~~~  318 (326)
T PHA02785        307 FTCMAFTIPSIS  318 (326)
T ss_pred             eEEEEEeccCce
Confidence            999999988543

>KOG4194|consensus

Probab=99.88  E-value=4.9e-21  Score=171.91  Aligned_cols=265  Identities=19%  Similarity=0.216  Sum_probs=193.2

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcC--CCCCeeEEecCCccCCC-----CCceEEE-EeC-------CeEEEEEcc
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITG--CPKPTISWLKGSREITP-----SARHHIF-AEG-------DTYTLIINS  354 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~--~p~~~v~W~~~~~~~~~-----~~~~~~~-~~~-------~~~~l~i~~  354 (591)
                      ...|.+...|..+.+..|+.++|+|.+.+  ..+.++.|.++......     ...+... .+|       -...|.+.+
T Consensus       501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n  580 (873)
T KOG4194|consen  501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN  580 (873)
T ss_pred             CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence            45788888888888899999999999977  56678999997653221     1111100 111       123689999


Q ss_pred             eecccceEEEEEEEeCCcce-eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeE-eeec
Q psy12425        355 VYGVDADEYVCRAVNKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEV-IESG  432 (591)
Q Consensus       355 ~~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~-~~~~  432 (591)
                      +...|+|.|.|.+.|..|.. +..+.+.|...|.+...|   .......|..+.|.|.+.|.|.|+|.|.++|.. ....
T Consensus       581 Vt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP---~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA  657 (873)
T KOG4194|consen  581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTP---EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAA  657 (873)
T ss_pred             eecccCceEEEEEecccCcchhheeEEEeeccCccccCc---ccceeecccceeeeeeccCCCCcceeehhcCCCCCchh
Confidence            99999999999999999988 667899999999988766   345678899999999999999999999998765 5544


Q ss_pred             cceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCee-eeecCCeeEEEeeccccCCCc
Q psy12425        433 GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTV-EDIGHDSLALVWRAPIWDGGS  511 (591)
Q Consensus       433 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~-~~~~~~~v~l~W~~p~~~~~~  511 (591)
                      ...++.+......+.|.++..+|.|.|+|.|.|.+|.-+..+.++|.+.|.....+.- .-+-..++.|.|.....    
T Consensus       658 ~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~----  733 (873)
T KOG4194|consen  658 RERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGA----  733 (873)
T ss_pred             hhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCC----
Confidence            5556666667788999999999999999999999999999999999988754333321 12346788899985221    


Q ss_pred             ceeeEEEEeeeCCCCc-eE--EeceeeeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425        512 NITNYIVEKREHPMSS-WI--RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR  562 (591)
Q Consensus       512 ~~~~y~v~~~~~~~~~-~~--~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~  562 (591)
                      +.. =++.|...+..- ..  .........+++.+..-.+.+.|+|.-.|..|.
T Consensus       734 ~a~-pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~  786 (873)
T KOG4194|consen  734 PAD-PRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGT  786 (873)
T ss_pred             CCC-ccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccc
Confidence            110 122222222110 00  112334457777777788889999999888884

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.83  E-value=1.4e-19  Score=130.88  Aligned_cols=93  Identities=22%  Similarity=0.403  Sum_probs=87.0

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      .|+++.+.+|+++.|.|.+.|.|++++.|+|+|..|..+.++++...+..+.|.|.++.++|+|.|+|.|.|..|....+
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~   85 (98)
T cd05762           6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ   85 (98)
T ss_pred             CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence            37889999999999999999999999999999999988878888877778899999999999999999999999999999


Q ss_pred             EEEEEecCCCCCC
Q psy12425         81 FTINITGLPGPPI   93 (591)
Q Consensus        81 ~~l~v~~~p~~p~   93 (591)
                      +.|.|.+.|.+|.
T Consensus        86 ~~l~V~~~P~pP~   98 (98)
T cd05762          86 VNLTVVDKPDPPA   98 (98)
T ss_pred             EEEEEecCCCCCC
Confidence            9999999998873

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG3515|consensus

Probab=99.82  E-value=5.5e-18  Score=160.41  Aligned_cols=554  Identities=13%  Similarity=0.115  Sum_probs=296.3

Q ss_pred             eeecCCeEEEEEEeccCC-CceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-EEEEE
Q psy12425          6 YIPEGDNTKVKIFYAGDQ-PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS-GTFTI   83 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-~~~~l   83 (591)
                      -+.+|+.|.|.|.+.++| .+.|.|++.++.+.  .++...   ...+|......++.-+.|.|++.|..+... ....+
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l   92 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYATI---ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMIL   92 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCcccc--cccccc---cCCceeeecchhhhhhhhhhhhcccccCceecceee
Confidence            578999999999998854 56999999988776  333222   123788888888889999999999966553 34667


Q ss_pred             EEecCCCCCCCCcceEEecCceEEEEecC-CCCCCCcceeeEEEEEEecCCC------ceEEEEee-cCcceEEEcCCcC
Q psy12425         84 NITGLPGPPIGPLDVSEITKHTCTLHWNP-PKYDGGLKVTHYVVERRDISMP------HWICISTT-CHDTTFIVQGLTE  155 (591)
Q Consensus        84 ~v~~~p~~p~~~~~~~~~~~~~~~l~w~~-p~~~~~~~~~~y~~~~~~~~~~------~~~~~~~~-~~~~~~~i~~l~~  155 (591)
                      .+...|..-..........+..+.+.|.. ........+.++..........      .+...... .....+.+.....
T Consensus        93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rk  172 (741)
T KOG3515|consen   93 DVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRK  172 (741)
T ss_pred             ccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEe
Confidence            77776654433344556677888999942 2211111222222222221111      11122222 2345566666677


Q ss_pred             CcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCC-CeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCC
Q psy12425        156 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGI-PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD  234 (591)
Q Consensus       156 ~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~  234 (591)
                      +..+.|+|.|.+..-..........+....+......... ..-....+..+.|.|............+|.....-... 
T Consensus       173 a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~-  251 (741)
T KOG3515|consen  173 ADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSES-  251 (741)
T ss_pred             cCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhh-
Confidence            8889999999985433333222222222211111111111 11223457778888865433333334433221111000 


Q ss_pred             ccEEEEeeecCCceeeecCcc------cCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCe-EEeeccccceecc
Q psy12425        235 AWQRVNVAICAPSQINIPNLI------EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPE-IIVPLRNANAIQN  307 (591)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~------~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~g  307 (591)
                        ....   ......++....      ....-...|.+.| .+     ..+..+.+.     .+|. ............|
T Consensus       252 --sl~~---~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~-----~~~~~tav~-----~~~~~~~Ist~~~~ls~g  315 (741)
T KOG3515|consen  252 --SLLS---QEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LL-----AASQITAVQ-----VKPTAVPISTSDSGLSSG  315 (741)
T ss_pred             --hccc---CCCCCCcccccccccccccchhhhhhccccC-cc-----ccceeeecc-----cccccccccCcccccccc
Confidence              0000   011112222222      2233345588877 11     122223322     1121 1122233447788


Q ss_pred             ccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEE--EeC--CeEEEEEcceecccceEEEEEEEeCCcceeee--eEE
Q psy12425        308 HNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIF--AEG--DTYTLIINSVYGVDADEYVCRAVNKGGVKSTK--AEL  380 (591)
Q Consensus       308 ~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~--~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~--~~l  380 (591)
                      ....+.|.. ..+|...+.|+++...........-.  ..+  ....+.+......+.|.|+|.|.+..+....+  ..+
T Consensus       316 ~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l  395 (741)
T KOG3515|consen  316 RSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLL  395 (741)
T ss_pred             cccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceec
Confidence            999999886 55788899999965443322211110  011  12356677788899999999999987655444  334


Q ss_pred             EEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeE
Q psy12425        381 IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY  459 (591)
Q Consensus       381 ~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y  459 (591)
                      .+..+|.......  ..+...+.+.....-.+.+. +.+.+.|.+++..+.....-............+.++...|.|.|
T Consensus       396 ~~l~~p~~L~~~~--~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y  473 (741)
T KOG3515|consen  396 PVLPSPAFLVRHK--TAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSY  473 (741)
T ss_pred             cccCCchhhhhcc--cceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcc
Confidence            4444443322111  12222334443333333344 46689999998888765554444444455555667889999999


Q ss_pred             EEEEEcCCCccceEEEEEecCCCC-CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe------c
Q psy12425        460 RVVAENDLGMDSAIVKIQISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV------G  532 (591)
Q Consensus       460 ~c~a~n~~g~~~~~~~~~v~~~p~-~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~------~  532 (591)
                      .|.|.|..|.....+.+.+.+.|. -+....+.....+++.+.+...  ++. .-..+.-..+.......+..      .
T Consensus       474 ~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~--~~~-~~~~m~~~~r~ge~~~~~~~~~~~~~~  550 (741)
T KOG3515|consen  474 GLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQD--EQP-QDQQMHHEPRSGEPPSDQIDQDAPQQQ  550 (741)
T ss_pred             eeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeecc--ccc-cchhhhcccccCCCCcccccccccccc
Confidence            999999999998888877776553 3333444445566655555421  121 11222222221111110110      1


Q ss_pred             eeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCCCCceee
Q psy12425        533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISLI  589 (591)
Q Consensus       533 ~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~~~~~  589 (591)
                      ......+.+.+-.....|++.|.+-|   .++++.-..+.+...+.-....+|..+.
T Consensus       551 ~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~pA~~~~~l~~~s~~~v~~~tp~~~~  604 (741)
T KOG3515|consen  551 LMAHAQLLVSGNSSLQASETACVVDG---SSPPAGLSLVLKAYSALIVTVRTPNMYT  604 (741)
T ss_pred             cCCccceeecccccccccceEEeecC---CCCccccceEEEecccccccccCCceee
Confidence            12334666666666777888888866   4555555555555544444444555443

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.79  E-value=5.7e-18  Score=141.94  Aligned_cols=159  Identities=16%  Similarity=0.262  Sum_probs=117.3

Q ss_pred             cccceeccccEEEEEEEcCCC-----------CCeeEEecCCccC--C-CCCc--eE-EE-E--eCCeEEEEEcceeccc
Q psy12425        300 RNANAIQNHNAQFQCTITGCP-----------KPTISWLKGSREI--T-PSAR--HH-IF-A--EGDTYTLIINSVYGVD  359 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p-----------~~~v~W~~~~~~~--~-~~~~--~~-~~-~--~~~~~~l~i~~~~~~d  359 (591)
                      ....+.+|+++.|.|.+.+.|           .+.+.|++++...  . .+.+  .. +. .  ......|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            345678999999999987644           4589999986431  1 0111  00 00 0  1123489999999999


Q ss_pred             ceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeec-----cCCCeEEEeeCCeEeeeccc
Q psy12425        360 ADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG-----YPKPKITWYRDNEVIESGGH  434 (591)
Q Consensus       360 ~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-----~p~~~v~W~~~~~~~~~~~~  434 (591)
                      +|.|+|.|.|..|.....+.|.|..++         ....+..|+.+.|.|.+.+     .|.|+++|++++..+....+
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~---------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r  180 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSGT---------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR  180 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecCC---------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence            999999999988887777777774321         1234578999999999863     46799999999999876666


Q ss_pred             eEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        435 FHVETSERHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       435 ~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      +.+.  .....|.|.+++.+|+|.|+|.|....+.
T Consensus       181 ~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~~g  213 (227)
T PHA02826        181 IQLR--NNNSTLVIKSATHDDSGIYTCNLRFNKNS  213 (227)
T ss_pred             EEEe--CCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence            5544  34568999999999999999999986543

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.76  E-value=1.3e-17  Score=120.01  Aligned_cols=85  Identities=27%  Similarity=0.443  Sum_probs=76.6

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEe-CCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL-DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      ||+.+++.+|+++.|.|.+.|.|.|.+.|+|+|..+....++++... +...+|.|.+++.+|+|.|+|.|.|..|....
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            68999999999999999999999999999999999988877777654 44578999999999999999999999999888


Q ss_pred             EEEEEE
Q psy12425         80 TFTINI   85 (591)
Q Consensus        80 ~~~l~v   85 (591)
                      .+.|.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            887764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.74  E-value=5.9e-17  Score=114.00  Aligned_cols=83  Identities=17%  Similarity=0.404  Sum_probs=74.7

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      +.+.+.+|+++.|.|.+.|.|.|.+.|+|++..+... .++.+....+.+.|.|.++.++|+|.|+|.|.|..|....++
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~   82 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL   82 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence            5788999999999999999999999999999999764 467776666778999999999999999999999999998888


Q ss_pred             EEEE
Q psy12425         82 TINI   85 (591)
Q Consensus        82 ~l~v   85 (591)
                      .|.|
T Consensus        83 ~l~V   86 (86)
T cd05894          83 FVKV   86 (86)
T ss_pred             EEEC
Confidence            8765

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.72  E-value=9.6e-17  Score=116.03  Aligned_cols=90  Identities=29%  Similarity=0.477  Sum_probs=83.5

Q ss_pred             cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      ....+..|+.+.|.|.+.|.|.+.+.|+++|..+..+.++.+...+..+.|+|.++...|+|.|+|.|.|..|.....+.
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~   87 (98)
T cd05762           8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN   87 (98)
T ss_pred             cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence            34567899999999999999999999999999998777888877777899999999999999999999999999999999


Q ss_pred             EEecCCCCCC
Q psy12425        476 IQISDRPDPP  485 (591)
Q Consensus       476 ~~v~~~p~~p  485 (591)
                      |.|.++|.+|
T Consensus        88 l~V~~~P~pP   97 (98)
T cd05762          88 LTVVDKPDPP   97 (98)
T ss_pred             EEEecCCCCC
Confidence            9999999988

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.70  E-value=3.3e-16  Score=113.00  Aligned_cols=84  Identities=20%  Similarity=0.274  Sum_probs=71.6

Q ss_pred             ceeeeecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeC-----CeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425          3 NALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLD-----DYIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      ..+++.+|+++.|.|.+.| .|+|.+.|+|||..|....+..+...+     ...+|.|.++.++|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            3688999999999999999 899999999999999865443333221     2478999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy12425         77 VSGTFTINIT   86 (591)
Q Consensus        77 ~~~~~~l~v~   86 (591)
                      .+..+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9998888875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.69  E-value=8.2e-16  Score=111.18  Aligned_cols=84  Identities=30%  Similarity=0.511  Sum_probs=80.0

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.+.|+++|..+..+.++.+...+...+|.|.++..+|+|.|+|.|.|..|..+..+
T Consensus         7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~   86 (90)
T PF07679_consen    7 PKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV   86 (90)
T ss_dssp             SSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence            67899999999999999999999999999999999999999999988999999999999999999999999999999988


Q ss_pred             EEEE
Q psy12425         82 TINI   85 (591)
Q Consensus        82 ~l~v   85 (591)
                      .|.|
T Consensus        87 ~l~V   90 (90)
T PF07679_consen   87 NLTV   90 (90)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            8876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.69  E-value=4.6e-16  Score=111.99  Aligned_cols=82  Identities=26%  Similarity=0.470  Sum_probs=74.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.|.|.|.+.|+|+|..+....++.+.......+|.|.+++.+|+|.|.|.|.|..|..+..+
T Consensus        10 p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   89 (92)
T cd05747          10 PRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQF   89 (92)
T ss_pred             CccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEE
Confidence            67899999999999999999999999999999998877788877666678999999999999999999999999988877


Q ss_pred             EE
Q psy12425         82 TI   83 (591)
Q Consensus        82 ~l   83 (591)
                      .|
T Consensus        90 ~l   91 (92)
T cd05747          90 TL   91 (92)
T ss_pred             Ee
Confidence            65

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.69  E-value=6.4e-16  Score=109.42  Aligned_cols=83  Identities=23%  Similarity=0.454  Sum_probs=71.8

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCEEeecC-CceeEEEe--CC--eEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVL--DD--YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN   84 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~--~~--~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~   84 (591)
                      |+.+.|.|.+.|.|++.+.|+|++..+..+ .++.+...  +.  ..+|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            899999999999999999999999988654 35554432  22  26899999999999999999999999999999999


Q ss_pred             EecCCCCC
Q psy12425         85 ITGLPGPP   92 (591)
Q Consensus        85 v~~~p~~p   92 (591)
                      |.+.|.+|
T Consensus        81 V~~~P~~P   88 (88)
T cd05735          81 VQEPPDPP   88 (88)
T ss_pred             EeCCCCCC
Confidence            99998876

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.68  E-value=5.1e-16  Score=111.12  Aligned_cols=85  Identities=24%  Similarity=0.435  Sum_probs=75.0

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeC-CeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLD-DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      +|..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+....++.+.... ...+|.|.+++.+|+|.|.|.|.|..|....
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV   86 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence            688999999999999999999999999999999998877766655433 3458999999999999999999999999988


Q ss_pred             EEEEEE
Q psy12425         80 TFTINI   85 (591)
Q Consensus        80 ~~~l~v   85 (591)
                      ++.|.|
T Consensus        87 ~~~v~~   92 (92)
T cd05891          87 DVTVSV   92 (92)
T ss_pred             EEEEEC
Confidence            888765

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.68  E-value=7.2e-16  Score=110.47  Aligned_cols=84  Identities=18%  Similarity=0.224  Sum_probs=72.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |+++.+.+|+.+.|.|.+.|.|.|.+.|+++|..+................|.|.++..+|.|.|+|.|.|..|....++
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~   86 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV   86 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence            67788999999999999999999999999999988665443344444567999999999999999999999999998888


Q ss_pred             EEEE
Q psy12425         82 TINI   85 (591)
Q Consensus        82 ~l~v   85 (591)
                      .|.|
T Consensus        87 ~L~v   90 (90)
T cd04972          87 QVTV   90 (90)
T ss_pred             EEeC
Confidence            8764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.67  E-value=5.4e-16  Score=109.94  Aligned_cols=81  Identities=17%  Similarity=0.231  Sum_probs=69.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+.+.|.|.+.|.|.|.++|+|++..+....++  ...  ...|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   83 (88)
T cd05851           8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SMS--GAVLKIFNIQPEDEGTYECEAENIKGKDKHQA   83 (88)
T ss_pred             cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ecC--CCEEEECcCChhhCEEEEEEEEcCCCceEEEE
Confidence            56788999999999999999999999999999887654332  222  24799999999999999999999999998888


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .|.|.
T Consensus        84 ~l~V~   88 (88)
T cd05851          84 RVYVQ   88 (88)
T ss_pred             EEEEC
Confidence            88773

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.67  E-value=6.4e-16  Score=104.75  Aligned_cols=73  Identities=25%  Similarity=0.394  Sum_probs=62.3

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeC-CeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLD-DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      |.|.|.+.|.|.|.|.|+|+|..+..+ .++.+...+ +..+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            579999999999999999999998753 555554433 3358999999999999999999999999998888765

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.66  E-value=7e-16  Score=104.34  Aligned_cols=73  Identities=21%  Similarity=0.233  Sum_probs=64.1

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      |+++.|.|.+.|.|.|.|.|+|++..+..+.++.+..  + .+|.|.+++++|.|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~--~-g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD--D-GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC--C-CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            7899999999999999999999999887766665532  2 37999999999999999999999999999888764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.66  E-value=1.4e-15  Score=108.86  Aligned_cols=85  Identities=24%  Similarity=0.303  Sum_probs=69.9

Q ss_pred             CCceeeeecCCeEEEEEEeccCCC-ceEEEEE-CCEEeec-CCceeEEEe-CCeEEEEEcccCCCCceEEEEEEEcCC-e
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQP-MEVSLTK-NGRVVQS-DDRFKFTVL-DDYIIIFIKEIRKEDAGDYTVNLSNSS-G   75 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~n~~-g   75 (591)
                      .|....+.+|++++|.|.+.|.|. |.++|++ ++..+.. +.++.+... +...+|.|.+++++|+|.|+|.|.|.. |
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g   85 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG   85 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence            377889999999999999999984 7999998 7877655 334444332 234789999999999999999999996 8


Q ss_pred             eeEEEEEEEE
Q psy12425         76 SVSGTFTINI   85 (591)
Q Consensus        76 ~~~~~~~l~v   85 (591)
                      ..+.++.|.|
T Consensus        86 ~~~~s~~l~v   95 (96)
T cd05865          86 ESEATVNVKI   95 (96)
T ss_pred             cEEEEEEEEE
Confidence            8888888876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.66  E-value=6.6e-16  Score=105.90  Aligned_cols=74  Identities=20%  Similarity=0.230  Sum_probs=64.3

Q ss_pred             cCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425          9 EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      +|+++.|.|.+.|.|.|.+.|+|+|..+....+..+.   ...+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            6999999999999999999999999988766554432   2238999999999999999999999999988888765

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.65  E-value=2e-15  Score=103.77  Aligned_cols=74  Identities=22%  Similarity=0.449  Sum_probs=67.4

Q ss_pred             eEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         12 NTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        12 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      ++.|.|.+.|.|.|.+.|+|+|..+..+.++.+...+....|.|.++.++|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            47899999999999999999999997777777777777889999999999999999999999999988888765

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.65  E-value=2.5e-15  Score=106.35  Aligned_cols=83  Identities=17%  Similarity=0.224  Sum_probs=71.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEE-CCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTK-NGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~   79 (591)
                      |.++.+.+|+++.|.|.+.|.|. .+.|++ ++..+..+.++.+...+...+|.|.++..+|+|.|+|.|.|..|.. ..
T Consensus         7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   85 (92)
T cd05866           7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA   85 (92)
T ss_pred             ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence            67889999999999999999998 999998 5777776677777666666799999999999999999999999886 55


Q ss_pred             EEEEEE
Q psy12425         80 TFTINI   85 (591)
Q Consensus        80 ~~~l~v   85 (591)
                      ++.|.+
T Consensus        86 ~i~l~~   91 (92)
T cd05866          86 TVVLEI   91 (92)
T ss_pred             EEEEEE
Confidence            576665

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.64  E-value=1.7e-15  Score=102.91  Aligned_cols=73  Identities=27%  Similarity=0.402  Sum_probs=61.9

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeC-CeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLD-DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      |+|.|.+.|.|.|.|.|+|++..+..+ .++.+...+ ...+|.|.+++++|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            579999999999999999999998754 455554433 2347999999999999999999999999998888765

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.64  E-value=2.2e-15  Score=106.36  Aligned_cols=80  Identities=16%  Similarity=0.209  Sum_probs=70.7

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+....++.+  .+  ..|.|.+++.+|+|.|+|.|.|..|....++
T Consensus         6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   81 (85)
T cd05728           6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EA--GDLRITKLSLSDSGMYQCVAENKHGTIYASA   81 (85)
T ss_pred             CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eC--CEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence            7889999999999999999999999999999999876655543  22  3799999999999999999999999998888


Q ss_pred             EEEE
Q psy12425         82 TINI   85 (591)
Q Consensus        82 ~l~v   85 (591)
                      .|.|
T Consensus        82 ~l~V   85 (85)
T cd05728          82 ELAV   85 (85)
T ss_pred             EEEC
Confidence            8765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.63  E-value=3.7e-15  Score=107.90  Aligned_cols=83  Identities=17%  Similarity=0.123  Sum_probs=70.4

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEe------CCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL------DDYIIIFIKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      ..++..|+.+.|.|.+.|.|+|.+.|+|||++|..+.+......      ...++|.|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            56789999999999999999999999999999986654322211      123689999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy12425         78 SGTFTINIT   86 (591)
Q Consensus        78 ~~~~~l~v~   86 (591)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.63  E-value=4.4e-15  Score=108.26  Aligned_cols=84  Identities=15%  Similarity=0.267  Sum_probs=68.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEE--CCEEeec-----CCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTK--NGRVVQS-----DDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~--~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      ++++.+.+|++++|.|.+.|.|.|.+.|+|  ++..+..     +.++.+.......+|.|.+++.+|+|.|.|.|.|..
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   87 (98)
T cd05870           8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI   87 (98)
T ss_pred             eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence            467899999999999999999999999999  4554432     234555444455789999999999999999999999


Q ss_pred             eeeEEEEEEEE
Q psy12425         75 GSVSGTFTINI   85 (591)
Q Consensus        75 g~~~~~~~l~v   85 (591)
                      |....++.|.|
T Consensus        88 G~~~~~~~l~~   98 (98)
T cd05870          88 GGHQKSMYLDI   98 (98)
T ss_pred             CcceeEEEEeC
Confidence            99888887764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.63  E-value=5.7e-15  Score=107.38  Aligned_cols=84  Identities=18%  Similarity=0.228  Sum_probs=71.5

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      .++.+..|+++.|.|.+.|.|.|.+.|+|+|..+.... .++....+...|.|.+++.+|.|.|+|.|.|..|.....+.
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE-EKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH   89 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC-CEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            45678999999999999999999999999999887651 22333344558999999999999999999999999999999


Q ss_pred             EEEec
Q psy12425         83 INITG   87 (591)
Q Consensus        83 l~v~~   87 (591)
                      |.|..
T Consensus        90 L~V~~   94 (95)
T cd05730          90 LKVFA   94 (95)
T ss_pred             EEEEe
Confidence            88864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.62  E-value=8.2e-15  Score=104.25  Aligned_cols=82  Identities=21%  Similarity=0.422  Sum_probs=69.3

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCce-eEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRF-KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      .+.|.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.+. .+.......+|.|.++.++|+|.|+|.|.|..|....++.
T Consensus         3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05857           3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   82 (85)
T ss_pred             cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence            456899999999999999999999999999998766443 2223334568999999999999999999999999988888


Q ss_pred             EEE
Q psy12425         83 INI   85 (591)
Q Consensus        83 l~v   85 (591)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05857          83 LDV   85 (85)
T ss_pred             EEC
Confidence            765

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.62  E-value=8.9e-15  Score=102.67  Aligned_cols=79  Identities=19%  Similarity=0.287  Sum_probs=65.5

Q ss_pred             CeEEEEEEeccCCCc--eEEEEECCEEeecC---Cce-eEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425         11 DNTKVKIFYAGDQPM--EVSLTKNGRVVQSD---DRF-KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN   84 (591)
Q Consensus        11 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~---~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~   84 (591)
                      ++++|.|.+.|+|.|  .+.|+|||+.+...   .++ ++....+..+|.|.+++..|+|.|+|.|.|..|..++++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            579999999999876  68999999988653   233 223333456999999999999999999999999999999999


Q ss_pred             EecCC
Q psy12425         85 ITGLP   89 (591)
Q Consensus        85 v~~~p   89 (591)
                      |..+|
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.62  E-value=5.1e-15  Score=101.68  Aligned_cols=76  Identities=17%  Similarity=0.205  Sum_probs=62.9

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT   86 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~   86 (591)
                      |+++.|.|.+.|.|.|+|.|+|+|+++...........+ ...|.|.++++.|+|.|+|.|.|..|...+++.|.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~-~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVD-GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEec-CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            789999999999999999999999998644221111122 2378999999999999999999999999999998873

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>KOG3515|consensus

Probab=99.62  E-value=1.7e-13  Score=130.47  Aligned_cols=543  Identities=15%  Similarity=0.035  Sum_probs=277.2

Q ss_pred             eeecCCeEEEEEEec--cCCCceEEEEECCEEeecCC--ceeEE------EeCCeEEEEEcccCCCCceEEEEEEEcCCe
Q psy12425          6 YIPEGDNTKVKIFYA--GDQPMEVSLTKNGRVVQSDD--RFKFT------VLDDYIIIFIKEIRKEDAGDYTVNLSNSSG   75 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~--~~p~~~v~W~~~~~~~~~~~--~~~~~------~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g   75 (591)
                      ....+..+.+.|.+.  +.|.+.+.|..++.......  +..+.      .......|.+.....++.|.|+|.|.|...
T Consensus       108 ~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s  187 (741)
T KOG3515|consen  108 FQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNS  187 (741)
T ss_pred             hhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccC
Confidence            456788999999653  47888999999886553321  11111      112235688888889999999999988532


Q ss_pred             ---eeEEEEEEEEecCCCCCCC--Ccc-eEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeec-CcceE
Q psy12425         76 ---SVSGTFTINITGLPGPPIG--PLD-VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC-HDTTF  148 (591)
Q Consensus        76 ---~~~~~~~l~v~~~p~~p~~--~~~-~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~  148 (591)
                         ..-....+.+.........  ... -.-..+..+.+.|..-........++|.-......+.......... .....
T Consensus       188 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~  267 (741)
T KOG3515|consen  188 PGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTL  267 (741)
T ss_pred             ccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccc
Confidence               2233344444433222111  001 0112456788888543322233344444322211110000000000 00011


Q ss_pred             EEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccc-cCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEE
Q psy12425        149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA-KSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID  227 (591)
Q Consensus       149 ~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~  227 (591)
                      .+..-..+..-.+.|.+.| .+...     ..+.. ..+...+..  ........+.+..+.|..........+.+|.-.
T Consensus       268 ~~~~~r~~~~~~~kc~a~n-~~~~~-----~~tav~~~~~~~~Is--t~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~  339 (741)
T KOG3515|consen  268 VLRVGRQDLQAQLKCKASN-LLAAS-----QITAVQVKPTAVPIS--TSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDT  339 (741)
T ss_pred             cccccccchhhhhhccccC-ccccc-----eeeeccccccccccc--CcccccccccccccceeccCCCCccceeeeccC
Confidence            1111111223345688876 11100     01111 011111111  112224556777777776655554455555411


Q ss_pred             eeecCCCccEEE--EeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEE-eeccccce
Q psy12425        228 KHEVGSDAWQRV--NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEII-VPLRNANA  304 (591)
Q Consensus       228 ~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~-~~~~~~~~  304 (591)
                      ....+...-.+.  .........+.+......+.+.|.|.|-+.... ..++....+.+.     .+|.++ .....+..
T Consensus       340 ~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~-~~sss~~~l~~l-----~~p~~L~~~~~~v~~  413 (741)
T KOG3515|consen  340 KMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA-HSSSSSFLLPVL-----PSPAFLVRHKTAVVA  413 (741)
T ss_pred             cccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccc-cccccceecccc-----CCchhhhhcccceee
Confidence            111111000000  000011234556667788999999999887632 222233333322     334433 33333444


Q ss_pred             eccccEEEEEEEcCCC-CCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        305 IQNHNAQFQCTITGCP-KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       305 ~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      .+.+.....-.+.++| .+.+.|.+.+.++.......+..-...-...+.++...|.|.|.|.|.|..|.......+.+.
T Consensus       414 ~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~  493 (741)
T KOG3515|consen  414 MEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVH  493 (741)
T ss_pred             ccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccc
Confidence            5554444443333544 467999988877765544322211111134466789999999999999999988888778888


Q ss_pred             cCCcccCCCCcccceeecCCCeEEEEEeeeccCC--CeEEEeeCCeEeeecc--ceEEEecCCeeEEEEeccCCCcceeE
Q psy12425        384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK--PKITWYRDNEVIESGG--HFHVETSERHAILTIRDASNVDTAPY  459 (591)
Q Consensus       384 ~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y  459 (591)
                      +.|.+....   .......++.+.+.|..+..+.  -.+.|.+.++......  ............+.+.......+|.|
T Consensus       494 ~sp~~~~~~---~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  570 (741)
T KOG3515|consen  494 TSPHNHHLQ---DQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASET  570 (741)
T ss_pred             cCCcccccc---cccccCCCCcccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccce
Confidence            877765322   2233466777999999876653  4789999887653221  11122223467778887877888999


Q ss_pred             EEEEEcCCCccceEEEEEecCCCC---CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC---CceEE-e-
Q psy12425        460 RVVAENDLGMDSAIVKIQISDRPD---PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM---SSWIR-V-  531 (591)
Q Consensus       460 ~c~a~n~~g~~~~~~~~~v~~~p~---~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~---~~~~~-~-  531 (591)
                      .|.+.+..--+.....+.+..++.   .+..+.........+++++.+    .+.+...|.....+...   ..... . 
T Consensus       571 ~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~a----~~~~~~~~~~~k~p~~~~~~~~~~~~~~  646 (741)
T KOG3515|consen  571 ACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCVA----SGVPSTSFTTAKTPLQTTEGPHIREKAT  646 (741)
T ss_pred             EEeecCCCCccccceEEEecccccccccCCceeeeccCccccccccee----cccccceeecccCCCcccCCceEEEeee
Confidence            999999322333444444443331   111122221122234444421    22233344333322110   00000 0 


Q ss_pred             --ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCc
Q psy12425        532 --GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS  569 (591)
Q Consensus       532 --~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~  569 (591)
                        ......+..+-+..++..|.+.|.+.|..|.+..+...
T Consensus       647 ~~~~~~s~~~~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~  686 (741)
T KOG3515|consen  647 QQGQTHSSSEWILNHIDGSDYENGCTTQNLLGSDHVSGAI  686 (741)
T ss_pred             eccccccccccccCCcchhhhcceeeecccCCCcccccee
Confidence              12233345556677888999999999999987766543

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.61  E-value=6.8e-15  Score=101.98  Aligned_cols=76  Identities=21%  Similarity=0.270  Sum_probs=66.8

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      |+++.|.|.+.|.|.|.+.|++++..+....++.+...++...|.|.+++.+|.|.|+|.|.|..|.......+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            7899999999999999999999999887777777776666789999999999999999999999998866654443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.61  E-value=8.2e-15  Score=101.07  Aligned_cols=74  Identities=14%  Similarity=0.277  Sum_probs=62.6

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCEEeecCCce-eEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRF-KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      |+++.|.|.+.|.|.|.++|+|+|..+...... ++...  ...|.|.+++++|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS--SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee--CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            789999999999999999999999988664321 22222  237999999999999999999999999988888877

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.61  E-value=5.5e-15  Score=102.51  Aligned_cols=79  Identities=24%  Similarity=0.333  Sum_probs=67.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.+. .+.+.|+|||.+|....++++.  +  ..|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--G--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--C--CEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence            788999999999999999986 5689999999999776666553  3  2799999999999999999999998877766


Q ss_pred             EEEE
Q psy12425         82 TINI   85 (591)
Q Consensus        82 ~l~v   85 (591)
                      .|.|
T Consensus        76 ~v~V   79 (79)
T cd04973          76 SVNV   79 (79)
T ss_pred             EEeC
Confidence            6654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.61  E-value=8.7e-15  Score=100.09  Aligned_cols=73  Identities=26%  Similarity=0.357  Sum_probs=61.8

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecC-CceeEEEe-CCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVL-DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      ++|.|.+.|.|.|.|.|+|++..+... .++.+... .+..+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            579999999999999999999998754 45555433 33458999999999999999999999999988888764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.61  E-value=5.2e-15  Score=97.04  Aligned_cols=66  Identities=23%  Similarity=0.389  Sum_probs=57.0

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT   86 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~   86 (591)
                      +.|.|.+.|.|.|.++|+|||+.|...        .....|.|.++..+|+|.|+|.|.|..|..+.++.+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            579999999999999999999998632        134589999999999999999999999988777777664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.60  E-value=1.5e-14  Score=102.43  Aligned_cols=83  Identities=23%  Similarity=0.436  Sum_probs=71.4

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEec----CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETS----ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      |+.+.|.|.+.|.|++.+.|++++..+... .++.+...    ...+.|.|.++...|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            678999999999999999999999888643 34544421    2237899999999999999999999999999999999


Q ss_pred             ecCCCCCC
Q psy12425        478 ISDRPDPP  485 (591)
Q Consensus       478 v~~~p~~p  485 (591)
                      |.++|.+|
T Consensus        81 V~~~P~~P   88 (88)
T cd05735          81 VQEPPDPP   88 (88)
T ss_pred             EeCCCCCC
Confidence            99999887

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.60  E-value=1.3e-14  Score=98.28  Aligned_cols=71  Identities=24%  Similarity=0.289  Sum_probs=61.3

Q ss_pred             eEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         12 NTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        12 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      ++.|.|.+.|.|.|.+.|+|+|..+....++++...+   .|.|.+++++|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999999999999999999988777666554332   5788899999999999999999999999888765

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.60  E-value=1.1e-14  Score=103.20  Aligned_cols=87  Identities=25%  Similarity=0.440  Sum_probs=74.0

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCC
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      +|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.  ..+  ..|.|.++..+|+|.|+|.|.|..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~~~--~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--MSG--AVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--cCC--CEEEECcCChhhCEEEEEEEEcCC
Confidence            4777788888889999999999999999999999999988776543332  222  379999999999999999999999


Q ss_pred             cceeeeeEEEE
Q psy12425        372 GVKSTKAELII  382 (591)
Q Consensus       372 g~~~~~~~l~v  382 (591)
                      |.....+.|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd05851          77 GKDKHQARVYV   87 (88)
T ss_pred             CceEEEEEEEE
Confidence            99988888776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.59  E-value=1.4e-14  Score=102.88  Aligned_cols=80  Identities=15%  Similarity=0.288  Sum_probs=66.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~~   80 (591)
                      |.++.+.+|++++|.|.+.|. .|.+.|+|++..+... +..  ...+..+|.|.+++++|+|.|+|.|.|..|.. +..
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~   85 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQ--LSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP   85 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEE--EeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence            456789999999999999999 9999999999987543 333  33444589999999999999999999999986 445


Q ss_pred             EEEEE
Q psy12425         81 FTINI   85 (591)
Q Consensus        81 ~~l~v   85 (591)
                      +.|.|
T Consensus        86 ~~L~V   90 (91)
T cd05740          86 YILNV   90 (91)
T ss_pred             EEEEe
Confidence            76766

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.59  E-value=9.6e-15  Score=104.32  Aligned_cols=81  Identities=21%  Similarity=0.302  Sum_probs=69.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+......+    .....|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus         8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   83 (88)
T cd04968           8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQG   83 (88)
T ss_pred             CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEE
Confidence            778899999999999999999999999999987665543322    1234899999999999999999999999998888


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .|.|.
T Consensus        84 ~l~V~   88 (88)
T cd04968          84 RIYVQ   88 (88)
T ss_pred             EEEEC
Confidence            88763

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.59  E-value=2.5e-14  Score=100.65  Aligned_cols=82  Identities=24%  Similarity=0.493  Sum_probs=71.8

Q ss_pred             ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+...+..+.|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            456788999999999999999999999999988653 4566666667889999999999999999999999999888887


Q ss_pred             EEe
Q psy12425        476 IQI  478 (591)
Q Consensus       476 ~~v  478 (591)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.59  E-value=1.3e-14  Score=106.01  Aligned_cols=84  Identities=17%  Similarity=0.193  Sum_probs=69.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC-----CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-----DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      +.+..+.+|+++.|.|.+.|.|.|.+.|++++..+...     .++.+........|.|.+++.+|+|.|.|.|.|..|.
T Consensus         8 ~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   87 (96)
T cd05732           8 LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG   87 (96)
T ss_pred             cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC
Confidence            45788999999999999999999999999998766543     2333333344579999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy12425         77 VSGTFTINI   85 (591)
Q Consensus        77 ~~~~~~l~v   85 (591)
                      .+.++.|.|
T Consensus        88 ~~~s~~l~v   96 (96)
T cd05732          88 DQQSMYLEV   96 (96)
T ss_pred             cEEEEEEeC
Confidence            988887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.59  E-value=1.9e-14  Score=104.67  Aligned_cols=84  Identities=18%  Similarity=0.229  Sum_probs=67.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC-----CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-----DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      |....+..|+.++|.|.+.|.|.|.++|++++..+...     .++.+........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         9 ~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   88 (97)
T cd05869           9 ENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQ   88 (97)
T ss_pred             cCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCC
Confidence            44455666899999999999999999999999877543     2233333334468999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy12425         77 VSGTFTINI   85 (591)
Q Consensus        77 ~~~~~~l~v   85 (591)
                      .+.++.|.|
T Consensus        89 ~~~~~~l~v   97 (97)
T cd05869          89 DSQSMYLEV   97 (97)
T ss_pred             eeEEEEEEC
Confidence            998888765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.58  E-value=1.3e-14  Score=99.18  Aligned_cols=73  Identities=19%  Similarity=0.233  Sum_probs=64.1

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      |+++.|.|.+.|.|.+.++|+|++..+....++.+.  .+ .+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~--~~-~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW--PD-GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC--CC-CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            789999999999999999999999998777666543  22 37999999999999999999999999998888765

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.58  E-value=1.6e-14  Score=100.21  Aligned_cols=76  Identities=14%  Similarity=0.146  Sum_probs=64.1

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT   86 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~   86 (591)
                      |+++.|.|.+.|.|.|.+.|+++|..+...... .........|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   76 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV   76 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence            789999999999999999999999988765432 1222333589999999999999999999999999998888773

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.57  E-value=3.9e-14  Score=101.89  Aligned_cols=83  Identities=23%  Similarity=0.518  Sum_probs=72.3

Q ss_pred             cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEec-CCeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425        396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS-ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  474 (591)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++..+|+|.|+|.|.|..|.....+
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV   88 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence            456678999999999999999999999999999987777776644 4467899999999999999999999999988887


Q ss_pred             EEEe
Q psy12425        475 KIQI  478 (591)
Q Consensus       475 ~~~v  478 (591)
                      .|.|
T Consensus        89 ~v~v   92 (92)
T cd05737          89 TVSV   92 (92)
T ss_pred             EEeC
Confidence            7754

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.57  E-value=2.4e-14  Score=97.05  Aligned_cols=70  Identities=11%  Similarity=0.144  Sum_probs=58.8

Q ss_pred             EEEEeccCCCceEEEEECCEEeecCCceeEE--E---eCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425         15 VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFT--V---LDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN   84 (591)
Q Consensus        15 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~---~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~   84 (591)
                      |.|.+.|.|.|+|+|+|||+.|..+.+....  .   ......|.|.++...|+|.|+|.|.|..|....++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            7899999999999999999999877654332  1   12346899999999999999999999999988887765

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.57  E-value=3.1e-14  Score=102.48  Aligned_cols=89  Identities=26%  Similarity=0.462  Sum_probs=78.5

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCC
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      ||.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+...+...+|.|.++..+|+|.|+|.|.|..
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   82 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE   82 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence            67777788888999999999999999999999999999988877777777766667799999999999999999999999


Q ss_pred             cceeeeeEE
Q psy12425        372 GVKSTKAEL  380 (591)
Q Consensus       372 g~~~~~~~l  380 (591)
                      |.......|
T Consensus        83 G~~~~~~~l   91 (92)
T cd05747          83 GKQEAQFTL   91 (92)
T ss_pred             CCEeEEEEe
Confidence            987766554

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.56  E-value=3.7e-14  Score=97.96  Aligned_cols=71  Identities=17%  Similarity=0.251  Sum_probs=59.6

Q ss_pred             EEEEeccCCCceEEEEECCEEeecCCceeEEEe-------CCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         15 VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL-------DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        15 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      |.|.+.|.|.|.|+|+|||+.|..+.+......       .....|.|.+++.+|+|.|+|.|.|..|..+.++.|..
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            789999999999999999999987765443322       22457999999999999999999999999988887754

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.55  E-value=2.5e-13  Score=114.14  Aligned_cols=112  Identities=15%  Similarity=0.176  Sum_probs=84.7

Q ss_pred             CCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEc-----CC
Q psy12425        245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-----GC  319 (591)
Q Consensus       245 ~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~-----~~  319 (591)
                      ....|.|.+++..|+|.|.|.|.|..|..   .....+.+..     +      ..+..+.+|+.+.|.|.+.     +.
T Consensus        96 r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~---~~~i~L~V~~-----~------~~~~~~~~G~~v~L~C~~~~~~~~~~  161 (227)
T PHA02826         96 RSENLWIGNVINIDEGIYICTISSGNICE---ESTIRLTFDS-----G------TINYQFNSGKDSKLHCYGTDGISSTF  161 (227)
T ss_pred             CCCeEEECCCChHHCEEEEEEEEECCcce---EEEEEEEEec-----C------CccceEecCCCEEEEeeCCCCccccC
Confidence            35689999999999999999999976542   2333344421     1      1234567899999999985     34


Q ss_pred             CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425        320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       320 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      |.|.+.|++++..+....++.+..++  .+|.|.+++.+|+|.|+|.|....+
T Consensus       162 p~p~I~WyKng~~l~~~~r~~~~~~~--~~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        162 KDYTLTWYKNGNIVLYTDRIQLRNNN--STLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             CCceEEEEECCEECCCCCCEEEeCCC--CEEEECcCCHHhCEEEEEEEEEeEC
Confidence            67899999999998766666554333  3899999999999999999988643

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.55  E-value=7.8e-14  Score=100.79  Aligned_cols=90  Identities=28%  Similarity=0.564  Sum_probs=83.2

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      |.|...+.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+..++|.|.++..+|+|.|+|.|.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            56777788899999999999999999999999999999999988899999888999999999999999999999999999


Q ss_pred             ceeeeeEEEE
Q psy12425        373 VKSTKAELII  382 (591)
Q Consensus       373 ~~~~~~~l~v  382 (591)
                      .....+.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            8888877765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.55  E-value=4e-14  Score=97.60  Aligned_cols=79  Identities=19%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             CeEEEEEEeccC--CCceEEEEECCEEeecC---CceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425         11 DNTKVKIFYAGD--QPMEVSLTKNGRVVQSD---DRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN   84 (591)
Q Consensus        11 ~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~---~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~   84 (591)
                      +++.|.|.+.++  +.+.|.|+|||+.|...   .++.... ......|+|.+++..|+|.|+|.|.|..+..+.++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            578999999874  47899999999999632   2333211 12345899999999999999999999999999999999


Q ss_pred             EecCC
Q psy12425         85 ITGLP   89 (591)
Q Consensus        85 v~~~p   89 (591)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99776

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.55  E-value=2.3e-14  Score=95.53  Aligned_cols=69  Identities=30%  Similarity=0.468  Sum_probs=57.3

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT   86 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~   86 (591)
                      +.|.|.+.|.|.|.+.|+|||+++....++  .   ....|.|.++.++|+|.|+|.|.|..|..+...++.+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            479999999999999999999999765332  1   23479999999999999999999999988776665553

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.55  E-value=3.2e-14  Score=96.10  Aligned_cols=70  Identities=27%  Similarity=0.465  Sum_probs=59.4

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT   86 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~   86 (591)
                      +.|.|.+.|.|.|.+.|+|||..+..+.++.    ....+|.|.+++.+|+|.|+|.|.|..|..+.++.+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            5799999999999999999999997764332    233589999999999999999999999988887777664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.55  E-value=4.9e-14  Score=97.20  Aligned_cols=73  Identities=16%  Similarity=0.285  Sum_probs=58.7

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCC-ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE--EEEEEEEec
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDD-RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS--GTFTINITG   87 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~--~~~~l~v~~   87 (591)
                      ++|.|.+.|.|.|.++|+|+|..+.... ++.+  ......|.|.+++++|+|.|.|.|.|..|...  ..+.|.|.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d   76 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSV--SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID   76 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEE--eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence            5899999999999999999999986653 2333  23335899999999999999999999999874  346666653

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.55  E-value=5.6e-14  Score=101.49  Aligned_cols=84  Identities=19%  Similarity=0.311  Sum_probs=70.3

Q ss_pred             cceeecCCCeEEEEEeeec-cCCCeEEEeeCCeEeeeccceEEEecC-----CeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        396 DTAYFDKGENVVVKIPFTG-YPKPKITWYRDNEVIESGGHFHVETSE-----RHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      ....+..|+.+.|.|.+.| .|+|.+.|+|+|.++.......+...+     ..+.|.|..+..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4566788999999999999 899999999999998754443333221     2578999999999999999999999999


Q ss_pred             cceEEEEEec
Q psy12425        470 DSAIVKIQIS  479 (591)
Q Consensus       470 ~~~~~~~~v~  479 (591)
                      .+..+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9988888774

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.55  E-value=7.3e-14  Score=98.89  Aligned_cols=79  Identities=18%  Similarity=0.299  Sum_probs=64.3

Q ss_pred             CeEEEEEEeccCCCc--eEEEEECCEEeecCC---cee-EEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425         11 DNTKVKIFYAGDQPM--EVSLTKNGRVVQSDD---RFK-FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN   84 (591)
Q Consensus        11 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~   84 (591)
                      +++.|.|.+.|.|.+  .+.|+|+|..+....   +++ ........+|.|.+++..|+|.|+|.|.|..|..+.++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            578999999998877  679999999886442   221 22223446899999999999999999999999999999999


Q ss_pred             EecCC
Q psy12425         85 ITGLP   89 (591)
Q Consensus        85 v~~~p   89 (591)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.55  E-value=4.6e-14  Score=95.70  Aligned_cols=73  Identities=23%  Similarity=0.466  Sum_probs=61.5

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeee-ccceEEEecC-CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIES-GGHFHVETSE-RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      +.|.|.+.|.|.|.+.|++++..+.. ..++.+...+ ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47999999999999999999998874 3455554433 3458999999999999999999999999988888764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.54  E-value=1.1e-13  Score=102.40  Aligned_cols=101  Identities=27%  Similarity=0.435  Sum_probs=78.4

Q ss_pred             ecCCcccCCCCcccceee-cCCCeEEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEec----CCeeEEEEeccC-CCc
Q psy12425        383 MTAPKFNVPPRFRDTAYF-DKGENVVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETS----ERHAILTIRDAS-NVD  455 (591)
Q Consensus       383 ~~~p~~~~~~~~~~~~~~-~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~-~~~  455 (591)
                      .++|.+..++.+...... ..|..+.|.|.+.|.|.+.+.|+++|..+... .++.+...    ...+.|+|.++. ..|
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            456777776664333222 46789999999999999999999999988643 34443321    124789999997 589


Q ss_pred             ceeEEEEEEcCCCccceEEEEEecCCCC
Q psy12425        456 TAPYRVVAENDLGMDSAIVKIQISDRPD  483 (591)
Q Consensus       456 ~g~y~c~a~n~~g~~~~~~~~~v~~~p~  483 (591)
                      .|.|+|.|.|..|.....+.|.+..+|+
T Consensus        82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~p~  109 (109)
T cd05773          82 YALFTCTAHNSLGEDSLDIQLVSTSRPD  109 (109)
T ss_pred             CEEEEEEEEeCCccCcEEEEEEecCCCC
Confidence            9999999999999999999999988774

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.54  E-value=2.9e-14  Score=101.78  Aligned_cols=82  Identities=16%  Similarity=0.210  Sum_probs=66.8

Q ss_pred             CceeeeecCCeEEEEEEecc-----CCCceEEEEECCEEeecC--CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSD--DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      ++...+.+|+++.|.|.+.|     .|.+.|.|+|++..+...  .+.++...  ...|.|.++..+|+|.|.|.+.|..
T Consensus         6 ~~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~   83 (94)
T cd05756           6 DKKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNST   83 (94)
T ss_pred             eeEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCC
Confidence            56778999999999999998     688999999999765322  22333332  3489999999999999999999999


Q ss_pred             eeeEEEEEEEE
Q psy12425         75 GSVSGTFTINI   85 (591)
Q Consensus        75 g~~~~~~~l~v   85 (591)
                      |..+..+.|.|
T Consensus        84 g~~~~~~~L~v   94 (94)
T cd05756          84 YCMKVSISLTV   94 (94)
T ss_pred             ccEEEEEEEEC
Confidence            99988888765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.54  E-value=1.1e-13  Score=102.32  Aligned_cols=82  Identities=20%  Similarity=0.180  Sum_probs=68.0

Q ss_pred             cCCeEEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeC----CeEEEEEcccC-CCCceEEEEEEEcCCeeeEEEEE
Q psy12425          9 EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLD----DYIIIFIKEIR-KEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~----~~~~l~i~~~~-~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      .|.+++|.|.+.|.|.+.+.|+|||..+... .++.+....    ...+|.|.++. .+|.|.|+|.|.|..|.....+.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            5689999999999999999999999998643 344433221    13689999997 59999999999999999999999


Q ss_pred             EEEecCCC
Q psy12425         83 INITGLPG   90 (591)
Q Consensus        83 l~v~~~p~   90 (591)
                      |.|...|+
T Consensus       102 L~~~~~p~  109 (109)
T cd05773         102 LVSTSRPD  109 (109)
T ss_pred             EEecCCCC
Confidence            99998774

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.54  E-value=6.7e-14  Score=96.81  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=65.4

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT   86 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~   86 (591)
                      +.|.|.+.|.|.|.+.|+|++..+....+.++...++...|.|.+++.+|.|.|+|.|.|..|..+..+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            47999999999999999999999877655566656666789999999999999999999999999999988885

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.54  E-value=3.3e-14  Score=95.79  Aligned_cols=68  Identities=19%  Similarity=0.317  Sum_probs=59.0

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI   83 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l   83 (591)
                      |.|.|.+.|.|.|.+.|+|+|..+....++.+..   ...|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            5799999999999999999999987766655432   2389999999999999999999999998887766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.53  E-value=1.1e-13  Score=99.08  Aligned_cols=83  Identities=20%  Similarity=0.269  Sum_probs=66.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEE-CCEEeecCCceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcCCee-eE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTK-NGRVVQSDDRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNSSGS-VS   78 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~-~~   78 (591)
                      |..+.+.+|+++.|.|.+.|.|. .+.|++ ++..+....++.+.. .....+|.|.+++.+|+|.|+|.|.|..|. .+
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~   85 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESE   85 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcce
Confidence            77899999999999999999874 999998 677666555554433 234579999999999999999999998654 46


Q ss_pred             EEEEEEE
Q psy12425         79 GTFTINI   85 (591)
Q Consensus        79 ~~~~l~v   85 (591)
                      .++.|.|
T Consensus        86 ~sv~l~~   92 (92)
T cd04977          86 ATVNLKI   92 (92)
T ss_pred             eEEEEEC
Confidence            6666653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.53  E-value=9.1e-14  Score=95.53  Aligned_cols=74  Identities=27%  Similarity=0.616  Sum_probs=66.7

Q ss_pred             eEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       405 ~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      .+.|.|.+.|.|.|.+.|+++|..+....++.+...+....|.|.++...|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            36899999999999999999999987777777777777899999999999999999999999999988887764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.53  E-value=1.3e-13  Score=99.01  Aligned_cols=76  Identities=18%  Similarity=0.399  Sum_probs=60.6

Q ss_pred             Cceeeee---cCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccC-CCCceEEEEEEEcCCeee
Q psy12425          2 PNALYIP---EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR-KEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         2 p~~~~v~---~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~n~~g~~   77 (591)
                      |.++.+.   +|+++.|.|.+.|.|.|.|+|+|||..+......++...++  .|.|.++. .+|+|.|+|.|.|..|..
T Consensus         8 p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~N~~G~~   85 (94)
T cd05848           8 PDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLATNSIGSI   85 (94)
T ss_pred             CCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEEcCCCeE
Confidence            4555554   57999999999999999999999999997554444443333  68898885 699999999999999987


Q ss_pred             EE
Q psy12425         78 SG   79 (591)
Q Consensus        78 ~~   79 (591)
                      .+
T Consensus        86 ~S   87 (94)
T cd05848          86 LS   87 (94)
T ss_pred             Ee
Confidence            44

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.53  E-value=8.6e-14  Score=93.03  Aligned_cols=68  Identities=18%  Similarity=0.276  Sum_probs=56.6

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEE
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI   83 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l   83 (591)
                      |++++|.|.+.|.|.|.|+|+|++..+....+...    ....|.|.++.  |+|.|+|.|.|..|..+.++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            78999999999999999999999998866544322    22378999874  7999999999999998887765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.53  E-value=4.8e-14  Score=95.36  Aligned_cols=73  Identities=27%  Similarity=0.542  Sum_probs=64.5

Q ss_pred             cccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       307 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      |+.+.|.|.+.|.|.|.+.|++++..+....++.+..++   +|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            678999999999999999999999888777777775555   7999999999999999999999999988877764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.53  E-value=2e-13  Score=98.15  Aligned_cols=80  Identities=21%  Similarity=0.378  Sum_probs=62.1

Q ss_pred             CceeeeecC---CeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccC-CCCceEEEEEEEcCCeee
Q psy12425          2 PNALYIPEG---DNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR-KEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         2 p~~~~v~~G---~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~n~~g~~   77 (591)
                      |.++.+.+|   ++++|.|.+.|.|.+.|+|++||..+......++...++  .|.|.++. ..|+|.|+|.|.|..|..
T Consensus         8 P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~   85 (94)
T cd05850           8 PSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAINRCGTV   85 (94)
T ss_pred             CCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEEcCcCcE
Confidence            566766666   589999999999999999999999987543333333332  68888865 599999999999999987


Q ss_pred             EE-EEEE
Q psy12425         78 SG-TFTI   83 (591)
Q Consensus        78 ~~-~~~l   83 (591)
                      .+ .+.|
T Consensus        86 ~s~~a~l   92 (94)
T cd05850          86 VSREANL   92 (94)
T ss_pred             EEEEEEE
Confidence            54 4544

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.52  E-value=7.2e-14  Score=96.26  Aligned_cols=74  Identities=20%  Similarity=0.407  Sum_probs=58.2

Q ss_pred             EEEEEEeccCCCceEEEEECCEEe-ecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVV-QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT   86 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~   86 (591)
                      +.|.|.+.|.|.|.++|+|+|... ......++........|.|.+++++|+|.|+|.|.|..|.....+.|.|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   75 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL   75 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence            479999999999999999998643 22222223333333489999999999999999999999999888888873

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.52  E-value=1.4e-13  Score=98.23  Aligned_cols=80  Identities=24%  Similarity=0.353  Sum_probs=66.0

Q ss_pred             CceeeeecCCeEEEEEEe-ccCCCceEEEEECCEEeecC-CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-
Q psy12425          2 PNALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS-   78 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-   78 (591)
                      |..+.+.+|+++.|.|.+ .|.|.+.+.|+|+|..+... .++.+.  . ...|.|.+++.+|+|.|+|.|.|..|... 
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~--~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV--D-DGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc--c-CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            788999999999999998 78999999999999988764 333332  2 24799999999999999999999999864 


Q ss_pred             EEEEEE
Q psy12425         79 GTFTIN   84 (591)
Q Consensus        79 ~~~~l~   84 (591)
                      ..+.|.
T Consensus        80 ~~~~l~   85 (86)
T cd05724          80 AAARLS   85 (86)
T ss_pred             eeEEEE
Confidence            345554

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.52  E-value=6.7e-14  Score=94.80  Aligned_cols=70  Identities=19%  Similarity=0.300  Sum_probs=58.9

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      +.|.|.+.|.|.|.+.|+|++..+.... ...  .....+|.|.+++.+|.|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-eeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            5799999999999999999998775442 222  233458999999999999999999999999988888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.52  E-value=1.6e-13  Score=99.61  Aligned_cols=83  Identities=20%  Similarity=0.315  Sum_probs=64.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEccc-----CCCCceEEEEEEEcC-Ce
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-----RKEDAGDYTVNLSNS-SG   75 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~Y~c~~~n~-~g   75 (591)
                      |.+..+.+|+++.|.|.+.|.|.|.+.|+|||..+....+.+.....+. .|.|.++     .+.|.|.|+|.|.|. .|
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G   84 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG-SLLITSVVHSKHNKPDEGFYQCVAQNDSLG   84 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC-eEEEeeeeccCCCCCcCEEEEEEEECCccC
Confidence            6788899999999999999999999999999999876543222222222 4666666     689999999999999 88


Q ss_pred             ee-EEEEEEEE
Q psy12425         76 SV-SGTFTINI   85 (591)
Q Consensus        76 ~~-~~~~~l~v   85 (591)
                      .. +..+.|.|
T Consensus        85 ~~~s~~~~l~v   95 (95)
T cd05722          85 SIVSRTARLTV   95 (95)
T ss_pred             cEEEeeeEEeC
Confidence            87 44566654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.51  E-value=6.3e-14  Score=96.06  Aligned_cols=74  Identities=35%  Similarity=0.671  Sum_probs=63.6

Q ss_pred             ccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       306 ~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      +|+.+.|.|.+.|.|.|.+.|++++..+....++.+...+   +|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            5889999999999999999999999888765555544333   7999999999999999999999999888777754

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.51  E-value=1.2e-13  Score=97.91  Aligned_cols=80  Identities=19%  Similarity=0.429  Sum_probs=66.6

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEE
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI   83 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l   83 (591)
                      .+.+..|+++.|.|.+.|.|.|.+.|+|++..+.......  ......+|.|.+++++|+|.|.|.|.|..|.....+.|
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v   80 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV   80 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence            4678899999999999999999999999998876543322  22344689999999999999999999999988887777


Q ss_pred             EE
Q psy12425         84 NI   85 (591)
Q Consensus        84 ~v   85 (591)
                      .|
T Consensus        81 ~v   82 (82)
T cd05856          81 DV   82 (82)
T ss_pred             eC
Confidence            54

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.50  E-value=1.3e-13  Score=94.93  Aligned_cols=70  Identities=10%  Similarity=0.191  Sum_probs=58.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |.++.|.+|+++.|.|.+.|.|.| .|.|+|||.++...  ..    .....|.|.++  .|+|.|.|.|.|..|...+
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA----PSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC----CCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            788999999999999999999999 79999999988641  11    12247888887  4789999999999997654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.50  E-value=1.9e-13  Score=99.04  Aligned_cols=84  Identities=20%  Similarity=0.313  Sum_probs=69.5

Q ss_pred             cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEec------CCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS------ERHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      ....+..|..+.|.|.+.|.|.|.+.|+++|.++...........      ...+.|.|.++..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          11 QLEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             ceEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            345667899999999999999999999999999875544322211      23478999999999999999999999999


Q ss_pred             cceEEEEEec
Q psy12425        470 DSAIVKIQIS  479 (591)
Q Consensus       470 ~~~~~~~~v~  479 (591)
                      .+.++.|.|.
T Consensus        91 ~~~t~~l~V~  100 (101)
T cd05859          91 KSYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9888888764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.50  E-value=1.7e-13  Score=98.04  Aligned_cols=76  Identities=20%  Similarity=0.251  Sum_probs=60.1

Q ss_pred             CCeEEEEEEeccCCCceEEEEEC----CEEeecCCceeEE--E-------eCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKN----GRVVQSDDRFKFT--V-------LDDYIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~----~~~~~~~~~~~~~--~-------~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      |++++|.|.+.|.|.|.|+|+|+    |..+....+....  .       ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999984    4444433221111  1       112368999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy12425         77 VSGTFTINI   85 (591)
Q Consensus        77 ~~~~~~l~v   85 (591)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            988888887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.50  E-value=1.8e-13  Score=93.05  Aligned_cols=73  Identities=25%  Similarity=0.471  Sum_probs=60.8

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEecC-CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETSE-RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+...+ ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            479999999999999999999988643 445554433 3347999999999999999999999999988887764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.50  E-value=1.9e-13  Score=97.97  Aligned_cols=77  Identities=19%  Similarity=0.268  Sum_probs=63.3

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCEEee--------cCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQ--------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |+++.|.|.+.|.|.|.+.|+|+|..+.        ...++.+  ..+ ..|.|.+++.+|+|.|.|.|.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v--~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV--SQT-GDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE--CCC-CeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            7899999999999999999999986531        1233333  222 3799999999999999999999999999999


Q ss_pred             EEEEecCC
Q psy12425         82 TINITGLP   89 (591)
Q Consensus        82 ~l~v~~~p   89 (591)
                      .|.|....
T Consensus        78 ~l~V~~~~   85 (90)
T cd05726          78 YLEVTDVI   85 (90)
T ss_pred             EEEEeecc
Confidence            99998743

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.49  E-value=5.8e-13  Score=95.40  Aligned_cols=82  Identities=17%  Similarity=0.289  Sum_probs=68.7

Q ss_pred             ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++...|.|.|+|.|.|..|.....+.|
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L   88 (90)
T cd04972           9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV   88 (90)
T ss_pred             CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence            34478999999999999999999999999988765444333334456789999999999999999999999998888777


Q ss_pred             Ee
Q psy12425        477 QI  478 (591)
Q Consensus       477 ~v  478 (591)
                      .+
T Consensus        89 ~v   90 (90)
T cd04972          89 TV   90 (90)
T ss_pred             eC
Confidence            54

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.49  E-value=3.6e-13  Score=94.52  Aligned_cols=79  Identities=24%  Similarity=0.354  Sum_probs=65.5

Q ss_pred             CeEEEEEeeeccCCC--eEEEeeCCeEeeec---cceE-EEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        404 ENVVVKIPFTGYPKP--KITWYRDNEVIESG---GHFH-VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       404 ~~~~l~c~~~~~p~~--~v~W~~~~~~~~~~---~~~~-~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      +.+.|.|.+.|.|.|  .+.|+++|..+...   .++. +........|+|.+++..|+|.|+|.|.|..|..+.++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            368999999999987  58999999887542   2332 23334567999999999999999999999999999999999


Q ss_pred             ecCCC
Q psy12425        478 ISDRP  482 (591)
Q Consensus       478 v~~~p  482 (591)
                      |..+|
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98876

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.49  E-value=4.7e-13  Score=97.60  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=67.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEeecC--CceeEEEe----CCeEEEEEcccCCC-CceEEEEEEEcC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSD--DRFKFTVL----DDYIIIFIKEIRKE-DAGDYTVNLSNS   73 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~-d~g~Y~c~~~n~   73 (591)
                      |..+.+.+|+++.|.|.+.|.|.| .|.|++++..+...  .++.+...    +...+|.|.+++.+ |.|.|.|.|.|.
T Consensus         8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758           8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence            456779999999999999999998 69999999988654  45555433    22368999999995 489999999999


Q ss_pred             CeeeEEEEEE
Q psy12425         74 SGSVSGTFTI   83 (591)
Q Consensus        74 ~g~~~~~~~l   83 (591)
                      .|.....+.|
T Consensus        88 ~G~~~~~~~L   97 (98)
T cd05758          88 FGSGTAIISL   97 (98)
T ss_pred             CCcccEEEEe
Confidence            9998877765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.49  E-value=2.1e-13  Score=93.26  Aligned_cols=72  Identities=18%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EEEEEEEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTFTINI   85 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~~~~l~v   85 (591)
                      ++|.|.+.|.|.|.|.|+|++..+......++....+ ..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~-g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRS-GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCC-cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            5799999999999999999999886432223333333 369999999999999999999999986 55577765

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.49  E-value=4.5e-13  Score=99.31  Aligned_cols=84  Identities=20%  Similarity=0.368  Sum_probs=63.7

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC----CceeEEE-eCCeEEEEEc--ccCCCCceEEEEEEEcCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD----DRFKFTV-LDDYIIIFIK--EIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~~~~~-~~~~~~l~i~--~~~~~d~g~Y~c~~~n~~   74 (591)
                      |.++.+.+|+++.|.|.+.|.|.|.+.|+|+|..+...    ....+.. .+....+.|.  .+..+|+|.|+|.|.|..
T Consensus         8 p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~   87 (100)
T cd07693           8 PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSL   87 (100)
T ss_pred             CceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccc
Confidence            67889999999999999999999999999999988762    1222222 2222333333  347899999999999999


Q ss_pred             ee-eEEEEEEEE
Q psy12425         75 GS-VSGTFTINI   85 (591)
Q Consensus        75 g~-~~~~~~l~v   85 (591)
                      |. .+..+.|.|
T Consensus        88 G~~~s~~~~l~v   99 (100)
T cd07693          88 GEAVSRNASLEV   99 (100)
T ss_pred             cceecceEEEEe
Confidence            99 466677765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.48  E-value=2.6e-13  Score=96.92  Aligned_cols=77  Identities=16%  Similarity=0.232  Sum_probs=59.4

Q ss_pred             CCeEEEEEEeccCCCceEEEEECC----EEeecCCc--eeEEE-------eCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNG----RVVQSDDR--FKFTV-------LDDYIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~----~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      |+.++|.|.+.|.|.|+|+|+|++    ..+.....  .....       .+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999999999999963    33322211  11111       123358999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy12425         77 VSGTFTINIT   86 (591)
Q Consensus        77 ~~~~~~l~v~   86 (591)
                      ...++.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9888888873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.48  E-value=4.2e-13  Score=92.28  Aligned_cols=73  Identities=21%  Similarity=0.341  Sum_probs=60.2

Q ss_pred             CCeEEEEEEeccCCCceEEEEE-CCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTK-NGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+....  .+ .+|.|..+..+|.|.|+|.|.|..|..+..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~--~~-~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY--DN-GTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe--cC-CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7899999999999999999997 67766555444332  22 37999999999999999999999999888887764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG0613|consensus

Probab=99.47  E-value=3e-12  Score=127.22  Aligned_cols=546  Identities=18%  Similarity=0.195  Sum_probs=293.2

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC---CceeE---EEeCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD---DRFKF---TVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      .+.+.+|....|.-++.|.|.+.-.|-.++..+...   ..+..   ....-..++-+.+-..+|.+.|...-.+..+ .
T Consensus        49 v~~~~e~~~a~~~~rv~~~~r~~~~~~s~~~~~~~~~pa~~~~~~~~~~~~l~~t~~v~~~~ad~~~~~~~e~~~~i~-~  127 (1205)
T KOG0613|consen   49 VLQVKEGETALLTGRVDGEPRPELIWGSSGIEIDMMVPATEYSLVTHMNTELGSTWAVGDEYADDRPIHLVERKALID-V  127 (1205)
T ss_pred             ceeccCCcceeeeeeeccccccCCCCcccccchhhcccccccccccccccccccccccccccccccccccccccccCC-c
Confidence            356778888888888888777666665554322110   00010   0111112333333444445444444433333 2


Q ss_pred             EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeec-CcceEEEcCCcCC
Q psy12425         78 SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC-HDTTFIVQGLTEG  156 (591)
Q Consensus        78 ~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~  156 (591)
                      .....+.-...|..|.............+...|..+..+++.....|+++.+..++..|....... ......+  ....
T Consensus       128 ~~~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~~--a~~e  205 (1205)
T KOG0613|consen  128 VPSPEVCQQEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDTD--AHYE  205 (1205)
T ss_pred             cccchhhhhcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCcceec--cccc
Confidence            333333334445555444445556677788899999999999999999999998888877654422 2222222  2133


Q ss_pred             cEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeee-cCCCc
Q psy12425        157 QEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHE-VGSDA  235 (591)
Q Consensus       157 ~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~-~~~~~  235 (591)
                      ..+.+.|.+.+..+...+..      ......+...+........+...+.+.|..+..+....+.+|.++... .+...
T Consensus       206 ~~v~~v~s~gqp~~~~~~~~------~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t  279 (1205)
T KOG0613|consen  206 SRVRAVVSAGQPEPLERWEI------LGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNT  279 (1205)
T ss_pred             eeEEEEEecCCCccchhhhh------cccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCcc
Confidence            44555555544333222211      111122333333333333444456677766543333344445444333 23333


Q ss_pred             cEEEEeeecCCceeeecCcccCCcEEEEEEE--EcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEE
Q psy12425        236 WQRVNVAICAPSQINIPNLIEGRQYEFRVYA--QNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQ  313 (591)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a--~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~  313 (591)
                      |...+.........+.  +.....+.++|.+  .-..|...+..........  ..+..|........+....+..+.+.
T Consensus       280 ~~i~~~~~~~~~s~t~--~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa--~~~~~~v~~~~~~~v~a~d~~~v~m~  355 (1205)
T KOG0613|consen  280 KTIQNDGPEPELSWTV--ADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAA--RPPEVPVGLVRNLSVTARDNTLVEMP  355 (1205)
T ss_pred             ccccccCCccccceee--ecccCCcccceeeeEEeeccccccCchhhhhhcc--CCccccccccccceeccccCcceeec
Confidence            3333222111111111  1122222333322  2222332222222111111  11122333333345566778899999


Q ss_pred             EEEcCCCCCe-eEEecCCccCCCCC--ceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccC
Q psy12425        314 CTITGCPKPT-ISWLKGSREITPSA--RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNV  390 (591)
Q Consensus       314 c~~~~~p~~~-v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~  390 (591)
                      |...+.+.+. +.|+++......+.  ..........+.+.+..+.+.+.+.|.|.|.|..|.........+...+....
T Consensus       356 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~  435 (1205)
T KOG0613|consen  356 TALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQ  435 (1205)
T ss_pred             ccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCC
Confidence            9999988876 99998766554443  23333444566889999999999999999999999887666666665554444


Q ss_pred             CCCcccce----eecCCCeEEEEEeeeccCCC--eEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEE
Q psy12425        391 PPRFRDTA----YFDKGENVVVKIPFTGYPKP--KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAE  464 (591)
Q Consensus       391 ~~~~~~~~----~~~~g~~~~l~c~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~  464 (591)
                      +..+....    .+..-+.+.+.|...+.+.+  .++|++++....  ........+....|.+.-....+.+.|.....
T Consensus       436 ~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s--~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~  513 (1205)
T KOG0613|consen  436 PPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLS--DRSVTLTRDVLTSLLLKVASLSDGAQYTRALR  513 (1205)
T ss_pred             CccccccccccccccCCcccccccCCCCccccceeEeeccCCcccc--cccccccccchhhheeeccCCCccchhhhhhh
Confidence            43332221    22334778889998888855  455555543322  22222233456677777788888888876665


Q ss_pred             cCCCccce--EEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEc
Q psy12425        465 NDLGMDSA--IVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT  542 (591)
Q Consensus       465 n~~g~~~~--~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~  542 (591)
                      ...|..-.  ...+.- ..+.+|..+.-...-.....|.|.+-..+.+..-..|.....  ..+.|+.......+..++.
T Consensus       514 ~~~~k~~~~~~~~l~~-~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~--qlg~~~~~~~r~gtt~t~~  590 (1205)
T KOG0613|consen  514 TLQGKPVPSLDRKLPA-AKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR--QLGVWRVPESRPGTTETIG  590 (1205)
T ss_pred             ccCCCCCCcccccccc-cccCCcccccccccCCCCcccccCCCcccccccchhhhhhhh--hccCCcccccCCCcccccc
Confidence            55554422  222211 122333222222233456677777533233322234443333  3355555533333899999


Q ss_pred             CcccCceEEEEEEEEcCCcCCCCCC
Q psy12425        543 GLSPGHQYEFRVYAENVYGRSDPST  567 (591)
Q Consensus       543 ~l~~~~~Y~~~v~A~n~~G~~~~s~  567 (591)
                      +..+++.|.+++.+.+..|.+.++.
T Consensus       591 ~~~p~~~~~~t~~~k~~~gE~~ps~  615 (1205)
T KOG0613|consen  591 SILPGHEYHVTIKAKNELGESRPSS  615 (1205)
T ss_pred             cccccccceeehhhhhcccccCCCC
Confidence            9999999999999999999999885

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.47  E-value=2.1e-13  Score=92.13  Aligned_cols=69  Identities=19%  Similarity=0.285  Sum_probs=57.7

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      ++|.|.+.|.|.|.+.|+|++..+... ++.+.   ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            579999999999999999998876443 44443   2347999999999999999999999999888887764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.47  E-value=4.2e-13  Score=92.99  Aligned_cols=76  Identities=28%  Similarity=0.358  Sum_probs=64.9

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      |+.+.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++..+|.|.|+|.|.|..|.......+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            6789999999999999999999998887666666666666789999999999999999999999998765554443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.47  E-value=2.6e-13  Score=89.03  Aligned_cols=65  Identities=22%  Similarity=0.506  Sum_probs=56.0

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      +.|.|.+.|.|.|.+.|+|+|..+..        ......|.|.++..+|+|.|+|.|.|..|..+..+.+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~--------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISG--------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcc--------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            47899999999999999999988852        124679999999999999999999999998777766654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.47  E-value=6.5e-13  Score=96.82  Aligned_cols=90  Identities=27%  Similarity=0.465  Sum_probs=70.1

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecC--CccCCC-----CCceEEEEeCCeEEEEEcceecccceEEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREITP-----SARHHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      +|.+.. +.+..+.+|+.+.|.|.+.|.|.|.+.|+++  +..+..     ..++.+.......+|.|.++..+|+|.|+
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            355543 5678899999999999999999999999984  333321     23455544445568999999999999999


Q ss_pred             EEEEeCCcceeeeeEEEE
Q psy12425        365 CRAVNKGGVKSTKAELII  382 (591)
Q Consensus       365 c~a~n~~g~~~~~~~l~v  382 (591)
                      |.|.|..|....++.|.|
T Consensus        81 C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          81 CEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeccCCcceeEEEEeC
Confidence            999999998887776653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.47  E-value=8.9e-13  Score=93.33  Aligned_cols=85  Identities=26%  Similarity=0.389  Sum_probs=69.7

Q ss_pred             EeeccccceeccccEEEEEEEcCCCCCeeEEec-CCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      ...+.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.+..++...+|.|.++..+|+|.|+|.|.|..|..
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            34556777899999999999999998 999997 4666666667777667777899999999999999999999999876


Q ss_pred             -eeeeEEE
Q psy12425        375 -STKAELI  381 (591)
Q Consensus       375 -~~~~~l~  381 (591)
                       ..+..|.
T Consensus        83 ~~~~i~l~   90 (92)
T cd05866          83 QEATVVLE   90 (92)
T ss_pred             EEEEEEEE
Confidence             3444443

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.46  E-value=3.7e-13  Score=89.65  Aligned_cols=69  Identities=23%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN   84 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~   84 (591)
                      +.|.|.+.|.|.|++.|+|+|.++..... ++...  ..+|.|.+++.+|+|.|+|.|.|..........++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVD--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeC--CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            47999999999999999999999876522 22222  24799999999999999999999876655554443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.46  E-value=4.4e-13  Score=92.81  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=58.4

Q ss_pred             EEEEEEecc-CCCceEEEEECCEEeecCCcee---EEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425         13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFK---FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus        13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      +.|.|.+.| .|.+.+.|+|+|+.+....+..   +.......+|.|.+++.+|.|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            479999999 9999999999999987664433   333445578999999999999999999999998877654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.46  E-value=8.4e-13  Score=95.96  Aligned_cols=82  Identities=32%  Similarity=0.564  Sum_probs=69.0

Q ss_pred             ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+... .++.  .......|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYS--FNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH   89 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEE--EeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            456788999999999999999999999999888654 3332  2344567999999999999999999999999988888


Q ss_pred             EEecC
Q psy12425        476 IQISD  480 (591)
Q Consensus       476 ~~v~~  480 (591)
                      |.|..
T Consensus        90 L~V~~   94 (95)
T cd05730          90 LKVFA   94 (95)
T ss_pred             EEEEe
Confidence            87753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.46  E-value=1.4e-12  Score=93.45  Aligned_cols=85  Identities=24%  Similarity=0.375  Sum_probs=66.8

Q ss_pred             eccccceeccccEEEEEEEcCCCC-CeeEEec-CCccCCC-CCceEEEEe-CCeEEEEEcceecccceEEEEEEEeCC-c
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPK-PTISWLK-GSREITP-SARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNKG-G  372 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~a~n~~-g  372 (591)
                      .+....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. ..++.+..+ +...+|.|.+++.+|+|.|+|.|.|.. |
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g   85 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG   85 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence            345556889999999999999995 7999998 6766654 334444333 335689999999999999999999996 7


Q ss_pred             ceeeeeEEEE
Q psy12425        373 VKSTKAELII  382 (591)
Q Consensus       373 ~~~~~~~l~v  382 (591)
                      ....++.|.|
T Consensus        86 ~~~~s~~l~v   95 (96)
T cd05865          86 ESEATVNVKI   95 (96)
T ss_pred             cEEEEEEEEE
Confidence            7777777765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.46  E-value=6.2e-13  Score=90.92  Aligned_cols=73  Identities=23%  Similarity=0.406  Sum_probs=60.7

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeec-cceEEEec-CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESG-GHFHVETS-ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+... .....|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            479999999999999999999988743 44554433 34457999999999999999999999999988887764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.46  E-value=1.1e-12  Score=93.90  Aligned_cols=83  Identities=23%  Similarity=0.517  Sum_probs=70.7

Q ss_pred             cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecC-CeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425        396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE-RHAILTIRDASNVDTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  474 (591)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   88 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV   88 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence            4567789999999999999999999999999988776666554433 345899999999999999999999999998888


Q ss_pred             EEEe
Q psy12425        475 KIQI  478 (591)
Q Consensus       475 ~~~v  478 (591)
                      .|.|
T Consensus        89 ~v~~   92 (92)
T cd05891          89 TVSV   92 (92)
T ss_pred             EEEC
Confidence            7764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.46  E-value=3.3e-13  Score=93.04  Aligned_cols=67  Identities=22%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCC----CCceEEEEEEEcCCeeeEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK----EDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~c~~~n~~g~~~~   79 (591)
                      ++|.|.+.|.|.|+|+|+|||..+......++........|.|..+..    +|+|.|+|.|.|..|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            579999999999999999999988654433444444455888888754    7899999999999998644

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.45  E-value=1.1e-12  Score=93.75  Aligned_cols=86  Identities=24%  Similarity=0.402  Sum_probs=70.0

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      +.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.......  .  ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~--~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (88)
T cd04968           2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--M--SGAVLKIPNIQFEDEGTYECEAENIKG   77 (88)
T ss_pred             CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--E--eCCEEEECCCCcccCEEEEEEEEECCC
Confidence            445555677778999999999999999999999999877665443332  1  223799999999999999999999999


Q ss_pred             ceeeeeEEEE
Q psy12425        373 VKSTKAELII  382 (591)
Q Consensus       373 ~~~~~~~l~v  382 (591)
                      .......|.|
T Consensus        78 ~~~~~~~l~V   87 (88)
T cd04968          78 KDTHQGRIYV   87 (88)
T ss_pred             cEEEEEEEEE
Confidence            9888877766

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.45  E-value=5.8e-13  Score=90.20  Aligned_cols=71  Identities=34%  Similarity=0.585  Sum_probs=61.2

Q ss_pred             cEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        309 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       309 ~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      .+.|.|.+.|.|.|.+.|++++..+....++.+..++   .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999999999999999999888776666665555   4888899999999999999999999888877754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.45  E-value=4.4e-13  Score=91.62  Aligned_cols=70  Identities=29%  Similarity=0.374  Sum_probs=58.5

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      +.|.|.+.|.|.|.+.|+|++..+... +...  ......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC-ceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            579999999999999999999877543 2222  233458999999999999999999999999988888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.45  E-value=1e-12  Score=94.25  Aligned_cols=84  Identities=13%  Similarity=0.226  Sum_probs=63.1

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECC--------EEeecCCceeEEEe-CCeEEEEEcccCCCCceEEEEEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--------RVVQSDDRFKFTVL-DDYIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--------~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      +++++.+.+|+++.|.|.+.+.|.+.+.|++.+        .....+.|+.+... ....+|.|.+++.+|+|.|.|.+.
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            478999999999999999999999999998633        22223445554322 345799999999999999999998


Q ss_pred             cCCeeeEEEEEEEE
Q psy12425         72 NSSGSVSGTFTINI   85 (591)
Q Consensus        72 n~~g~~~~~~~l~v   85 (591)
                      +..+. .....|.|
T Consensus        83 t~~~~-~~~~~l~v   95 (95)
T cd07701          83 TMPVK-TSKAYLTV   95 (95)
T ss_pred             eecCc-cEEEEEEC
Confidence            75333 44555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.45  E-value=1.3e-12  Score=95.01  Aligned_cols=91  Identities=23%  Similarity=0.400  Sum_probs=69.2

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCC-----CceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-----ARHHIFAEGDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      .|.+...+.......|+.+.|.|.+.|.|.|.+.|++++..+...     .++.+........|.|.++..+|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            355554444444455899999999999999999999987665432     233333344456899999999999999999


Q ss_pred             EEeCCcceeeeeEEEE
Q psy12425        367 AVNKGGVKSTKAELII  382 (591)
Q Consensus       367 a~n~~g~~~~~~~l~v  382 (591)
                      |.|..|.....+.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999888777654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.44  E-value=1.6e-12  Score=92.89  Aligned_cols=78  Identities=23%  Similarity=0.255  Sum_probs=60.1

Q ss_pred             CceeeeecCC---eEEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeCCeEEEEEcccC-CCCceEEEEEEEcCCee
Q psy12425          2 PNALYIPEGD---NTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIR-KEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         2 p~~~~v~~G~---~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~n~~g~   76 (591)
                      |.++.+.+|.   .+.|.|.+.|.|.|.++|+|++..+... .++  ...+  ..|.|.++. .+|+|.|+|.|.|..|.
T Consensus         8 P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~--~~~~--g~L~I~~~~~~~D~G~Y~C~A~N~~G~   83 (93)
T cd05849           8 PIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRY--SMVG--GNLVINNPDKYKDAGRYVCIVSNIYGK   83 (93)
T ss_pred             CCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeE--EEEC--CEEEECcCCcCCCCEEEEEEEEeCcce
Confidence            5555555544   8999999999999999999999988543 333  2223  379999985 68999999999999998


Q ss_pred             eEE-EEEE
Q psy12425         77 VSG-TFTI   83 (591)
Q Consensus        77 ~~~-~~~l   83 (591)
                      ..+ .+.|
T Consensus        84 ~~s~~a~l   91 (93)
T cd05849          84 VRSREATL   91 (93)
T ss_pred             EEEccEEE
Confidence            744 3544

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.44  E-value=8.4e-13  Score=90.62  Aligned_cols=71  Identities=21%  Similarity=0.251  Sum_probs=52.9

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCC----CCceEEEEEEEcCCeeeEEE-EEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK----EDAGDYTVNLSNSSGSVSGT-FTI   83 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~c~~~n~~g~~~~~-~~l   83 (591)
                      +.|.|.+.|.|.|+|+|+|+|..+.......+.......+|.|..+..    .|.|.|+|.|.|..|...+. +.|
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            579999999999999999999987544333333333334777777764    37899999999999987553 443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.44  E-value=4.8e-13  Score=94.43  Aligned_cols=82  Identities=27%  Similarity=0.483  Sum_probs=69.3

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceee
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST  376 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~  376 (591)
                      ..+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++... .+   .|.|.++..+|+|.|+|.|.|..|....
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~-~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE-AG---DLRITKLSLSDSGMYQCVAENKHGTIYA   79 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe-CC---EEEEeeCCHHHCEEEEEEEECCCCeEEE
Confidence            4456777899999999999999999999999999988766555442 22   6999999999999999999999998887


Q ss_pred             eeEEEE
Q psy12425        377 KAELII  382 (591)
Q Consensus       377 ~~~l~v  382 (591)
                      ++.|.|
T Consensus        80 ~~~l~V   85 (85)
T cd05728          80 SAELAV   85 (85)
T ss_pred             EEEEEC
Confidence            777654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.44  E-value=8.4e-13  Score=91.05  Aligned_cols=79  Identities=19%  Similarity=0.289  Sum_probs=64.8

Q ss_pred             CeEEEEEeeec--cCCCeEEEeeCCeEeee---ccceEEEec-CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        404 ENVVVKIPFTG--YPKPKITWYRDNEVIES---GGHFHVETS-ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       404 ~~~~l~c~~~~--~p~~~v~W~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      +.+.|.|.+.+  .+++.+.|++||..+..   +.+|..... .....|.|.+++..|+|.|+|.|.|..+..+.++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            35789999976  45889999999999962   224433221 3456899999999999999999999999999999999


Q ss_pred             ecCCC
Q psy12425        478 ISDRP  482 (591)
Q Consensus       478 v~~~p  482 (591)
                      |..||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99877

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.43  E-value=9.4e-13  Score=90.42  Aligned_cols=74  Identities=22%  Similarity=0.310  Sum_probs=60.8

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeCCeEeeeccce-EEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHF-HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      |+.+.|.|.+.|.|.|+|.|+++|.++...... ....  ....|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            578899999999999999999999988543211 1111  2347899999999999999999999999998888876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.43  E-value=1.5e-12  Score=89.34  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=51.3

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccC---C-CCceEEEEEEEcCCeeeEEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR---K-EDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~---~-~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      +.|.|.+.|.|.|.|+|+|+|..+......++.......+|.|..+.   + +|+|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            57999999999999999999997744323233333334588888764   2 46999999999999987443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.43  E-value=1.1e-12  Score=89.07  Aligned_cols=72  Identities=21%  Similarity=0.534  Sum_probs=58.8

Q ss_pred             EEEEeeeccCCCeEEEeeCCeEeeeccceEE--E---ecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHV--E---TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       407 ~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~--~---~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      .+.|.+.|.|.|+|+|+++|..+..+.....  .   .......|.|.++...|+|.|+|.|.|..|..+.++.+..
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f   78 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF   78 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence            3679999999999999999999976554322  1   1234578999999999999999999999999888877653

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.43  E-value=1.1e-12  Score=92.43  Aligned_cols=75  Identities=23%  Similarity=0.365  Sum_probs=57.9

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCE---E--eecCC-ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEE
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGR---V--VQSDD-RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI   83 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~---~--~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l   83 (591)
                      |+++.|.|.+.|.|.|.+.|+|++.   .  +.... ..++.. ....+|.|.+++++|+|.|.|.|.|..|.....+.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL   79 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence            7899999999999999999999742   1  11111 111211 123589999999999999999999999999888887


Q ss_pred             EE
Q psy12425         84 NI   85 (591)
Q Consensus        84 ~v   85 (591)
                      .|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            65

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.43  E-value=8.1e-13  Score=90.35  Aligned_cols=73  Identities=34%  Similarity=0.555  Sum_probs=63.8

Q ss_pred             cccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       307 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      |+.+.|.|.+.|.|.+.+.|++++..+....++.+..++   +|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            678999999999999999999999988777777665444   6999999999999999999999999888777654

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.42  E-value=1.8e-12  Score=94.72  Aligned_cols=90  Identities=26%  Similarity=0.447  Sum_probs=70.5

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCC-----CceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-----ARHHIFAEGDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      +|.+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...     .++.+........|.|.++..+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            45554 345677899999999999999999999999987655432     233333334456899999999999999999


Q ss_pred             EEeCCcceeeeeEEEE
Q psy12425        367 AVNKGGVKSTKAELII  382 (591)
Q Consensus       367 a~n~~g~~~~~~~l~v  382 (591)
                      |.|..|....++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999999877776653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.42  E-value=2.1e-12  Score=91.80  Aligned_cols=80  Identities=18%  Similarity=0.375  Sum_probs=66.0

Q ss_pred             eecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccce-EEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        399 YFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF-HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       399 ~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      .+..|+.+.|.|.+.|.|.|.+.|+++|..+...... .+........|.|.++.++|+|.|+|.|.|..|....++.|.
T Consensus         5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   84 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence            3578999999999999999999999999988655432 122223456799999999999999999999999988888776


Q ss_pred             e
Q psy12425        478 I  478 (591)
Q Consensus       478 v  478 (591)
                      |
T Consensus        85 v   85 (85)
T cd05857          85 V   85 (85)
T ss_pred             C
Confidence            4

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.42  E-value=1.6e-12  Score=89.85  Aligned_cols=72  Identities=28%  Similarity=0.598  Sum_probs=59.2

Q ss_pred             EEEEeeeccCCCeEEEeeCCeEeeeccceEEEe-------cCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHVET-------SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       407 ~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      .+.|.+.|.|.|.++|+++|..+..........       ......|.|.++...|.|.|+|.|.|..|..+..+.+.+
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            368999999999999999999997665433221       123568999999999999999999999999988877654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.42  E-value=1.8e-12  Score=89.39  Aligned_cols=74  Identities=27%  Similarity=0.377  Sum_probs=61.2

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeCCeEeeeccce-EEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHF-HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      |+.+.|.|.+.|.|.|.+.|+++|..+...... ....  ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            678999999999999999999999887643211 1111  3467999999999999999999999999888887766

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.41  E-value=8.4e-13  Score=88.93  Aligned_cols=68  Identities=32%  Similarity=0.603  Sum_probs=58.7

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      +.|.|.+.|.|.|.+.|++++..+....++.+.   ....|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS---PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEEC---CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            479999999999999999999888766665543   24689999999999999999999999998877765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>KOG0196|consensus

Probab=99.41  E-value=1.7e-11  Score=115.39  Aligned_cols=214  Identities=22%  Similarity=0.293  Sum_probs=148.6

Q ss_pred             ceEEEEEEEcCCeeeEE-EEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCc------
Q psy12425         63 AGDYTVNLSNSSGSVSG-TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH------  135 (591)
Q Consensus        63 ~g~Y~c~~~n~~g~~~~-~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~------  135 (591)
                      .|.=.|...+..-.... ....--+.+|++|.+  .+..+.+.++.|.|.+|.+.+|..-..|.+..+.-....      
T Consensus       305 ega~~C~C~~gyyRA~~Dp~~mpCT~PPSaP~n--lis~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~C  382 (996)
T KOG0196|consen  305 EGATSCTCENGYYRADSDPPSMPCTRPPSAPRN--LISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPC  382 (996)
T ss_pred             CCCCcccccCCcccCCCCCCCCCCCCCCCccce--eeeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccC
Confidence            34444555444333321 133333445556654  234578999999999999999988888998775432111      


Q ss_pred             -----eEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCC-CCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEE
Q psy12425        136 -----WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM-GPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLS  209 (591)
Q Consensus       136 -----~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~  209 (591)
                           +..-........+.+.+|.+.++|+|.+.|.|.... +........+...+....|++...+.......++++|+
T Consensus       383 g~~V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitls  462 (996)
T KOG0196|consen  383 GDNVRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLS  462 (996)
T ss_pred             CCCceECCCCCCcccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEe
Confidence                 111111345678999999999999999999986543 22223344455555666777777888889999999999


Q ss_pred             EecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcc
Q psy12425        210 WDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN  280 (591)
Q Consensus       210 w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~  280 (591)
                      |..|..+++ .+..|.+.|.+..... ..........+..+|.+|.+++.|.|+++|++..|.+..+....
T Consensus       463 W~~p~~png-~ildYEvky~ek~~~e-~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~  531 (996)
T KOG0196|consen  463 WSEPDQPNG-VILDYEVKYYEKDEDE-RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHE  531 (996)
T ss_pred             cCCCCCCCC-cceeEEEEEeeccccc-cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCcee
Confidence            999987765 5888999999885422 22223334567889999999999999999999999987765433

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.41  E-value=1.6e-12  Score=90.23  Aligned_cols=75  Identities=25%  Similarity=0.263  Sum_probs=62.9

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      |+.+.|.|.+.|.|.|.+.|+++|..+...... .........|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            678999999999999999999999888654332 122234578999999999999999999999999988887776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.41  E-value=2.3e-12  Score=91.17  Aligned_cols=79  Identities=20%  Similarity=0.298  Sum_probs=64.7

Q ss_pred             CeEEEEEeeeccCCC--eEEEeeCCeEeeecc---ceE-EEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        404 ENVVVKIPFTGYPKP--KITWYRDNEVIESGG---HFH-VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       404 ~~~~l~c~~~~~p~~--~v~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      +.+.|.|.+.|.|.|  .+.|+++|..+....   .+. .........|.|.+++..|+|.|+|.|.|..|..+.++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            367899999999988  679999999876332   222 22233567899999999999999999999999999999999


Q ss_pred             ecCCC
Q psy12425        478 ISDRP  482 (591)
Q Consensus       478 v~~~p  482 (591)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98876

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.40  E-value=1.8e-12  Score=92.75  Aligned_cols=83  Identities=17%  Similarity=0.222  Sum_probs=65.0

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCC--ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCe-eeE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG-SVS   78 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g-~~~   78 (591)
                      |..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+....  +.++....  ..|.|.+++++|+|.|.|.|.+..+ ...
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~   79 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTL   79 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeE
Confidence            67889999999999999986 888999999998776542  22333332  2599999999999999999987654 446


Q ss_pred             EEEEEEEec
Q psy12425         79 GTFTINITG   87 (591)
Q Consensus        79 ~~~~l~v~~   87 (591)
                      .++.|.|.+
T Consensus        80 ~~~~l~V~~   88 (89)
T cd04979          80 ATYSLNVLE   88 (89)
T ss_pred             eEEEEEEec
Confidence            668887764

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.40  E-value=1.3e-12  Score=89.41  Aligned_cols=61  Identities=16%  Similarity=0.230  Sum_probs=52.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCC-ceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQP-MEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      |+...+.+|++++|+|.+.+.|. ..+.|+|||..+..          ....|.|.++ .+|+|.|+|.|.|.
T Consensus         7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            67789999999999999998775 57999999998732          2237899999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.39  E-value=6.4e-12  Score=87.02  Aligned_cols=69  Identities=22%  Similarity=0.309  Sum_probs=57.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      |.++.+.+|+++.|.|.+. .+.+++.|++||..|..+.. ++...++  .|.|.+++.+|+|.|+|.|.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~-r~~~~~~--~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESA-KYLLYRD--GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCc-eEEEECC--cEEEeCCCHHHCEEEEEEEEecc
Confidence            7889999999999999986 46789999999999977632 2233333  69999999999999999998764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.39  E-value=1.7e-12  Score=86.50  Aligned_cols=68  Identities=28%  Similarity=0.592  Sum_probs=56.2

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      +.|.|.+.|.|.|.+.|+++|.++.....+  .   ....|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            368999999999999999999998654322  1   2457999999999999999999999998876666554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.39  E-value=3.4e-12  Score=89.44  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=58.6

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCEEeecCC----ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCe--eeEEEEEE
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD----RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG--SVSGTFTI   83 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g--~~~~~~~l   83 (591)
                      |++++|.|.+.+.|.+.+.|+++++......    +..+.......+|.|.+++.+|+|.|.|.|.|..+  ....++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            8999999999999999999999876432211    11111122257899999999999999999998876  55777888


Q ss_pred             EEe
Q psy12425         84 NIT   86 (591)
Q Consensus        84 ~v~   86 (591)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            775

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.39  E-value=1.6e-12  Score=87.75  Aligned_cols=69  Identities=25%  Similarity=0.488  Sum_probs=58.2

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      +.|.|.+.|.|.|.+.|+++|..+....++.    .....|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            4689999999999999999999887654332    23578999999999999999999999998877766654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.38  E-value=2.2e-12  Score=91.12  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=59.8

Q ss_pred             CCeEEEEEEeccC--CCceEEEEECCEEeecCCc---eeE--EEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425         10 GDNTKVKIFYAGD--QPMEVSLTKNGRVVQSDDR---FKF--TVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus        10 G~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~---~~~--~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      |+++.|.|.+.|.  |.+.+.|++++..+.....   ...  .......+|.|.+++.+|+|.|+|.|.|..|..+.+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            8999999999998  8899999998865532211   011  11123468999999999999999999999999888888


Q ss_pred             EEE
Q psy12425         83 INI   85 (591)
Q Consensus        83 l~v   85 (591)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.38  E-value=3.6e-12  Score=88.12  Aligned_cols=74  Identities=22%  Similarity=0.390  Sum_probs=63.2

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEec
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS  479 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~  479 (591)
                      +.|.|.+.|.|.|.+.|++++..+.......+........|.|.++...|.|.|+|.|.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            36899999999999999999998865544444444556789999999999999999999999999999998875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.38  E-value=6e-12  Score=93.24  Aligned_cols=91  Identities=26%  Similarity=0.441  Sum_probs=68.1

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCC----C-ceEEEEeCCeEEEEEc--ceecccceEEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS----A-RHHIFAEGDTYTLIIN--SVYGVDADEYV  364 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~----~-~~~~~~~~~~~~l~i~--~~~~~d~g~y~  364 (591)
                      +|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...    . ......++....+.+.  .+..+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            477777788888999999999999999999999999999887651    2 2222334433333332  34689999999


Q ss_pred             EEEEeCCcc-eeeeeEEEE
Q psy12425        365 CRAVNKGGV-KSTKAELII  382 (591)
Q Consensus       365 c~a~n~~g~-~~~~~~l~v  382 (591)
                      |.|.|..|. .+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 455666655

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.37  E-value=7.2e-12  Score=89.96  Aligned_cols=76  Identities=22%  Similarity=0.371  Sum_probs=58.4

Q ss_pred             Cceeeeec---CCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCC-CCceEEEEEEEcCCeee
Q psy12425          2 PNALYIPE---GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK-EDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         2 p~~~~v~~---G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~c~~~n~~g~~   77 (591)
                      |.++.+.+   |+++.|.|.+.|+|.+.++|+|++..+......++...++  .|.|.++.. +|+|.|+|.|.|..|..
T Consensus         8 p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~N~~G~~   85 (91)
T cd04967           8 PDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLASNIVGTV   85 (91)
T ss_pred             CCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEEcCCCEE
Confidence            45555544   4679999999999999999999999885443333433333  688988874 89999999999999986


Q ss_pred             EE
Q psy12425         78 SG   79 (591)
Q Consensus        78 ~~   79 (591)
                      .+
T Consensus        86 ~S   87 (91)
T cd04967          86 LS   87 (91)
T ss_pred             Ee
Confidence            44

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.37  E-value=1.4e-11  Score=87.86  Aligned_cols=71  Identities=15%  Similarity=0.255  Sum_probs=56.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEe--------ecCCceeEEEeC-CeEEEEEcccCCCCceEEEEEEEc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV--------QSDDRFKFTVLD-DYIIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      -.++++.+|+++.|.|.+.+.|.+.|.|+|++..+        ....|+.+.... ...+|.|.+++.+|+|.|+|.+..
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            35789999999999999999999999999977533        123444433322 357999999999999999999976

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.37  E-value=1.2e-11  Score=88.23  Aligned_cols=82  Identities=20%  Similarity=0.400  Sum_probs=67.4

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeE-EEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKF-TVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      .+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+........ ........|.|.++..+|.|.|.|.+.|..|..+.++.
T Consensus         3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~   82 (85)
T cd05729           3 LHAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK   82 (85)
T ss_pred             eeEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence            46788999999999999999999999999998865543332 22334468999999999999999999999999888777


Q ss_pred             EEE
Q psy12425         83 INI   85 (591)
Q Consensus        83 l~v   85 (591)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05729          83 VDV   85 (85)
T ss_pred             EeC
Confidence            764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.36  E-value=5.6e-12  Score=87.05  Aligned_cols=70  Identities=17%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             EEEEEEecc-CCCceEEEEECCEEeecC----CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425         13 TKVKIFYAG-DQPMEVSLTKNGRVVQSD----DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus        13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      +.|+|.+.+ .|.+.+.|+|+|+.+...    .++.+........|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999875 688999999999988643    2233333445578999999999999999999999998877654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.36  E-value=6.1e-12  Score=84.09  Aligned_cols=68  Identities=25%  Similarity=0.458  Sum_probs=55.0

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      |+.+.|.|.+.|.|.|.|.|++++..+.....+..    ....|.|.++.  |.|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            57899999999999999999999988755443321    23478888874  7899999999999987776655

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.36  E-value=4.2e-12  Score=86.01  Aligned_cols=70  Identities=24%  Similarity=0.518  Sum_probs=57.0

Q ss_pred             EEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       310 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      +.|.|.+.|.|.|.+.|++++..+..... ...  ....+|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-eEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            46899999999999999999877654322 222  22348999999999999999999999999888777766

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.36  E-value=1.1e-11  Score=89.11  Aligned_cols=82  Identities=24%  Similarity=0.368  Sum_probs=61.3

Q ss_pred             CeEEeecccccee---ccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEccee-cccceEEEEEEE
Q psy12425        293 PEIIVPLRNANAI---QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY-GVDADEYVCRAV  368 (591)
Q Consensus       293 p~~~~~~~~~~~~---~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~a~  368 (591)
                      |.|+..+.++.+.   +|+.+.|.|.+.|.|.|.+.|++++..+...........++  .|.|.++. ..|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence            4455555554333   47899999999999999999999998886544333332222  68888875 699999999999


Q ss_pred             eCCcceee
Q psy12425        369 NKGGVKST  376 (591)
Q Consensus       369 n~~g~~~~  376 (591)
                      |..|....
T Consensus        80 N~~G~~~S   87 (94)
T cd05848          80 NSIGSILS   87 (94)
T ss_pred             cCCCeEEe
Confidence            99997743

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.36  E-value=4.4e-12  Score=87.45  Aligned_cols=71  Identities=30%  Similarity=0.561  Sum_probs=56.9

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeecc-ceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc--ceEEEEEe
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGG-HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD--SAIVKIQI  478 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~--~~~~~~~v  478 (591)
                      +.|.|.+.|.|.|.+.|+++|..+.... .+.+  ......|.|.++.++|.|.|.|.|.|..|..  +..+.|.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSV--SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEE--eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            4799999999999999999999886543 3333  2345689999999999999999999999986  34555554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.36  E-value=4.7e-12  Score=89.70  Aligned_cols=77  Identities=21%  Similarity=0.220  Sum_probs=63.9

Q ss_pred             CCceeeeecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      .|+.+.+.+|++++|.|.+.+ .|.+.+.|++++..+....      ......|.|.+++.+|+|.|.|.|.|..|....
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc------cccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            378899999999999999975 7889999999987653321      112348999999999999999999999999888


Q ss_pred             EEEE
Q psy12425         80 TFTI   83 (591)
Q Consensus        80 ~~~l   83 (591)
                      ++.|
T Consensus        81 ~~~l   84 (85)
T cd05754          81 TATL   84 (85)
T ss_pred             EEEE
Confidence            7765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.35  E-value=7.2e-12  Score=89.07  Aligned_cols=78  Identities=17%  Similarity=0.266  Sum_probs=63.8

Q ss_pred             ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEE
Q psy12425        397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVK  475 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~  475 (591)
                      ...+.+|+.+.|.|.+.|. .|.+.|++++..+... ++.+  ......|.|.+++.+|.|.|.|.|.|..|.. +..+.
T Consensus        12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~   87 (91)
T cd05740          12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQL--SNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI   87 (91)
T ss_pred             ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEE--eCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence            3457889999999999999 9999999999887543 3332  3345689999999999999999999999985 55666


Q ss_pred             EEe
Q psy12425        476 IQI  478 (591)
Q Consensus       476 ~~v  478 (591)
                      |.|
T Consensus        88 L~V   90 (91)
T cd05740          88 LNV   90 (91)
T ss_pred             EEe
Confidence            655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.35  E-value=3.9e-12  Score=87.59  Aligned_cols=73  Identities=23%  Similarity=0.326  Sum_probs=56.7

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeee-ccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIES-GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      +.|.|.+.|.|.|.+.|++++..... .....+........|.|.++..+|+|.|.|.|.|..|..+..+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            36899999999999999999864321 11112222234458999999999999999999999999888888776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.35  E-value=2.1e-11  Score=86.60  Aligned_cols=82  Identities=22%  Similarity=0.327  Sum_probs=67.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEeecC--CceeEEEe----CCeEEEEEcccCCCC-ceEEEEEEEcC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSD--DRFKFTVL----DDYIIIFIKEIRKED-AGDYTVNLSNS   73 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~Y~c~~~n~   73 (591)
                      ++...+.+|+++.|.|.+.+.|.| .|.|.+++..|..+  .++.+...    +..++|.|.++...| .|.|.|.|.|.
T Consensus         8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~   87 (98)
T cd05898           8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS   87 (98)
T ss_pred             CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence            356789999999999999777765 67999888877554  56666554    356899999998877 79999999999


Q ss_pred             CeeeEEEEEE
Q psy12425         74 SGSVSGTFTI   83 (591)
Q Consensus        74 ~g~~~~~~~l   83 (591)
                      .|.....+.|
T Consensus        88 ~G~d~~~i~L   97 (98)
T cd05898          88 FGSGTAIIQL   97 (98)
T ss_pred             CccceEEEEe
Confidence            9999887765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.34  E-value=9.9e-12  Score=88.92  Aligned_cols=76  Identities=18%  Similarity=0.355  Sum_probs=58.7

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeC----CeEeeeccc--eEEEe-------cCCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRD----NEVIESGGH--FHVET-------SERHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~----~~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      |+.+.|.|.+.|.|.|.+.|+++    +..+..+..  ..+..       ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    443332221  11111       122468999999999999999999999999


Q ss_pred             cceEEEEEe
Q psy12425        470 DSAIVKIQI  478 (591)
Q Consensus       470 ~~~~~~~~v  478 (591)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            988888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.34  E-value=1.3e-11  Score=88.14  Aligned_cols=80  Identities=24%  Similarity=0.336  Sum_probs=59.3

Q ss_pred             CeEEeeccccceec---cccEEEEEEEcCCCCCeeEEecCCccCCC-CCceEEEEeCCeEEEEEccee-cccceEEEEEE
Q psy12425        293 PEIIVPLRNANAIQ---NHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEGDTYTLIINSVY-GVDADEYVCRA  367 (591)
Q Consensus       293 p~~~~~~~~~~~~~---g~~~~l~c~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~a  367 (591)
                      |.|...+.+..+.+   +..+.|.|.+.|.|.|.+.|++++..+.. ..++.+ ..+   .|.|.++. ..|+|.|+|.|
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-~~g---~L~I~~~~~~~D~G~Y~C~A   77 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-VGG---NLVINNPDKYKDAGRYVCIV   77 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-ECC---EEEECcCCcCCCCEEEEEEE
Confidence            44555555443333   34799999999999999999999887753 334433 333   69998885 68999999999


Q ss_pred             EeCCcceee
Q psy12425        368 VNKGGVKST  376 (591)
Q Consensus       368 ~n~~g~~~~  376 (591)
                      .|..|....
T Consensus        78 ~N~~G~~~s   86 (93)
T cd05849          78 SNIYGKVRS   86 (93)
T ss_pred             EeCcceEEE
Confidence            999997743

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.34  E-value=9.5e-12  Score=89.10  Aligned_cols=77  Identities=32%  Similarity=0.538  Sum_probs=62.9

Q ss_pred             cccEEEEEEEcCCCCCeeEEecCCccC--------CCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeee
Q psy12425        307 NHNAQFQCTITGCPKPTISWLKGSREI--------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA  378 (591)
Q Consensus       307 g~~~~l~c~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~  378 (591)
                      |+.+.|.|.+.|.|.|.+.|++++..+        ....++.+..++   .|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            678999999999999999999987643        123344443333   699999999999999999999999999999


Q ss_pred             EEEEecCC
Q psy12425        379 ELIIMTAP  386 (591)
Q Consensus       379 ~l~v~~~p  386 (591)
                      .|.|....
T Consensus        78 ~l~V~~~~   85 (90)
T cd05726          78 YLEVTDVI   85 (90)
T ss_pred             EEEEeecc
Confidence            99987643

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.33  E-value=2.4e-11  Score=87.46  Aligned_cols=80  Identities=24%  Similarity=0.390  Sum_probs=60.1

Q ss_pred             CeEEeeccccceecc---ccEEEEEEEcCCCCCeeEEecCCccCCCCC--ceEEEEeCCeEEEEEccee-cccceEEEEE
Q psy12425        293 PEIIVPLRNANAIQN---HNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTYTLIINSVY-GVDADEYVCR  366 (591)
Q Consensus       293 p~~~~~~~~~~~~~g---~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~  366 (591)
                      |.+...+.+..+.+|   +.+.|.|.+.|.|.|.+.|++++..+....  ++.+ ..+   .|.|.++. ..|+|.|+|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~g---~L~I~~~~~~~D~G~Y~C~   77 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-VAG---NLVINNPQKARDAGSYQCL   77 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-ECC---eEEEccCCccCcCEEEEEE
Confidence            445555555554444   689999999999999999999998886433  3333 233   68888765 5999999999


Q ss_pred             EEeCCcceee
Q psy12425        367 AVNKGGVKST  376 (591)
Q Consensus       367 a~n~~g~~~~  376 (591)
                      |.|..|....
T Consensus        78 A~N~~G~~~s   87 (94)
T cd05850          78 AINRCGTVVS   87 (94)
T ss_pred             EEcCcCcEEE
Confidence            9999997743

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.32  E-value=7.6e-12  Score=84.49  Aligned_cols=69  Identities=23%  Similarity=0.407  Sum_probs=57.0

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      +.|.|.+.|.|.|.+.|++++..+.. .++.+.   ....|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC-CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            47999999999999999999876643 334333   3457999999999999999999999999888777754

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.31  E-value=1.3e-11  Score=85.51  Aligned_cols=77  Identities=19%  Similarity=0.341  Sum_probs=62.9

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeE
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE  379 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~  379 (591)
                      ....+.+|+.+.|.|.+.+. .+.+.|+++|..+....++.+.  +.  +|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~   76 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFS   76 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence            34567899999999999986 5689999999998776666553  22  7999999999999999999999887766555


Q ss_pred             EE
Q psy12425        380 LI  381 (591)
Q Consensus       380 l~  381 (591)
                      +.
T Consensus        77 v~   78 (79)
T cd04973          77 VN   78 (79)
T ss_pred             Ee
Confidence            54

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.31  E-value=1.3e-11  Score=84.43  Aligned_cols=70  Identities=27%  Similarity=0.516  Sum_probs=56.8

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeee--ccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEEEe
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIES--GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQI  478 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v  478 (591)
                      +.|.|.+.|.|.|.+.|++++..+..  ..++...   ....|.|.+++..|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            46999999999999999999988763  3343332   34569999999999999999999999985 66666665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.31  E-value=8e-12  Score=86.14  Aligned_cols=65  Identities=23%  Similarity=0.420  Sum_probs=52.3

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCC----CcceeEEEEEEcCCCcc
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASN----VDTAPYRVVAENDLGMD  470 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~c~a~n~~g~~  470 (591)
                      +.|.|.+.|.|.|.++|++++..+.......+........|.|..+..    +|+|.|.|.|.|..|..
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA   69 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence            478999999999999999999988644333334444567888988754    68999999999999975

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.31  E-value=2.2e-11  Score=83.72  Aligned_cols=73  Identities=26%  Similarity=0.454  Sum_probs=59.1

Q ss_pred             CCeEEEEEeeeccCCCeEEEee-CCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        403 GENVVVKIPFTGYPKPKITWYR-DNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....++.+.   ....|.|..+..+|.|.|+|.|.|..|..+..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY---DNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe---cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6789999999999999999997 56655544433332   2457999999999999999999999999888777654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.30  E-value=1.5e-11  Score=87.05  Aligned_cols=77  Identities=18%  Similarity=0.212  Sum_probs=61.2

Q ss_pred             ceeeeecCCeEEEEEEecc-----CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425          3 NALYIPEGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      ....+.+|.++.|.|...+     .|.|.+.|+||++++....+. +.   ....|.|.++..+|+|.|+|.|.|..+..
T Consensus         3 ~~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~   78 (92)
T cd05757           3 YKQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGK   78 (92)
T ss_pred             ceEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence            3567999999999998754     257899999999998765433 22   33489999999999999999999988776


Q ss_pred             EEEEEE
Q psy12425         78 SGTFTI   83 (591)
Q Consensus        78 ~~~~~l   83 (591)
                      ...++.
T Consensus        79 ~~~~t~   84 (92)
T cd05757          79 QYNVTR   84 (92)
T ss_pred             EEEEEE
Confidence            554443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.30  E-value=1.1e-11  Score=84.63  Aligned_cols=70  Identities=21%  Similarity=0.424  Sum_probs=57.9

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      +.|.|.+.|.|.|.+.|++++..+.... .  ........|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-T--KFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-e--eEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4689999999999999999987764321 1  22234568999999999999999999999999888888776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.30  E-value=1.8e-11  Score=87.43  Aligned_cols=76  Identities=21%  Similarity=0.378  Sum_probs=57.9

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeCC----eEeeecc-ce-EEE-------ecCCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRDN----EVIESGG-HF-HVE-------TSERHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~~----~~~~~~~-~~-~~~-------~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      |+.+.|.|.+.|.|.|.|+|++++    ..+.... .+ ...       .......|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            578999999999999999999964    2222111 11 111       1123457999999999999999999999999


Q ss_pred             cceEEEEEe
Q psy12425        470 DSAIVKIQI  478 (591)
Q Consensus       470 ~~~~~~~~v  478 (591)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            988888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.30  E-value=4.1e-11  Score=87.33  Aligned_cols=88  Identities=26%  Similarity=0.378  Sum_probs=68.0

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCC--CceEEEEe----CCeEEEEEcceeccc-ceEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPS--ARHHIFAE----GDTYTLIINSVYGVD-ADEY  363 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y  363 (591)
                      ||.+.. +....+..|+.+.|.|.+.|.|.| .+.|++++..+...  .++.+...    +...+|.|.++..+| .|.|
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            455543 345668899999999999999999 69999998877643  45665543    234589999999955 8999


Q ss_pred             EEEEEeCCcceeeeeEE
Q psy12425        364 VCRAVNKGGVKSTKAEL  380 (591)
Q Consensus       364 ~c~a~n~~g~~~~~~~l  380 (591)
                      +|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999987666544

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.29  E-value=1.4e-11  Score=85.25  Aligned_cols=70  Identities=26%  Similarity=0.499  Sum_probs=57.7

Q ss_pred             EEEEEeeec-cCCCeEEEeeCCeEeeeccceE---EEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        406 VVVKIPFTG-YPKPKITWYRDNEVIESGGHFH---VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       406 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      +.|.|.+.| .|.|.+.|++++..+.......   +........|.|.++..+|.|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 9999999999999887544332   334455789999999999999999999999998766553

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.29  E-value=9.8e-12  Score=88.86  Aligned_cols=83  Identities=40%  Similarity=0.630  Sum_probs=69.5

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCc-eEEe-ceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS-WIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~-~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      ++|.++.+..++.+++.|+|++|. +++..+.+|.|.++...... |... .......+.|.+|.|++.|.|+|+|.|..
T Consensus         1 s~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~   79 (85)
T PF00041_consen    1 SAPENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD   79 (85)
T ss_dssp             SSSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred             CcCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence            367889999999999999999886 56679999999999877665 5444 33344589999999999999999999999


Q ss_pred             cCCCCC
Q psy12425        561 GRSDPS  566 (591)
Q Consensus       561 G~~~~s  566 (591)
                      |.|++|
T Consensus        80 g~g~~S   85 (85)
T PF00041_consen   80 GEGPPS   85 (85)
T ss_dssp             EEEEEE
T ss_pred             cCcCCC
Confidence            988764

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.29  E-value=1.7e-11  Score=84.09  Aligned_cols=66  Identities=20%  Similarity=0.339  Sum_probs=50.5

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCC----cceeEEEEEEcCCCccc
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNV----DTAPYRVVAENDLGMDS  471 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~----~~g~y~c~a~n~~g~~~  471 (591)
                      +.|.|.+.|.|.|+++|++++..+.......+........|.|..+...    |.|.|+|.|.|..|...
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence            4799999999999999999998874333323333344567888777643    78999999999999863

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.28  E-value=5.2e-11  Score=85.25  Aligned_cols=83  Identities=22%  Similarity=0.353  Sum_probs=62.4

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEec-CCccCCCCCceEEEEe-CCeEEEEEcceecccceEEEEEEEeCCcc-e
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNKGGV-K  374 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~a~n~~g~-~  374 (591)
                      .+....+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.+... +...+|+|.+++.+|+|.|+|.|.|..|. .
T Consensus         6 ~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~   84 (92)
T cd04977           6 VPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTES   84 (92)
T ss_pred             ecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcc
Confidence            345567889999999999999975 999997 5555554445444433 34568999999999999999999998654 3


Q ss_pred             eeeeEEE
Q psy12425        375 STKAELI  381 (591)
Q Consensus       375 ~~~~~l~  381 (591)
                      ..++.|.
T Consensus        85 ~~sv~l~   91 (92)
T cd04977          85 EATVNLK   91 (92)
T ss_pred             eeEEEEE
Confidence            4444443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.28  E-value=4.4e-11  Score=86.78  Aligned_cols=84  Identities=15%  Similarity=0.255  Sum_probs=61.4

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEe--------ecCCceeEEE-eCCeEEEEEcccCCCCceEEEEEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV--------QSDDRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      +++++.+.+|++++|.|.+.+.+.+.+.|++.+..+        ....|+.+.. .+....|.|.+++.+|+|.|.|.+.
T Consensus         3 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~   82 (95)
T cd05717           3 VTQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY   82 (95)
T ss_pred             cCCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence            467899999999999999988888999998633211        1224554422 2345689999999999999999998


Q ss_pred             cCCeeeEEEEEEEE
Q psy12425         72 NSSGSVSGTFTINI   85 (591)
Q Consensus        72 n~~g~~~~~~~l~v   85 (591)
                      +... .+..+.|+|
T Consensus        83 ~~~~-~~~~~~~~v   95 (95)
T cd05717          83 TMPV-QTAKATVTV   95 (95)
T ss_pred             cCCC-ceEEEEEEC
Confidence            7653 355555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.28  E-value=2.8e-11  Score=85.57  Aligned_cols=77  Identities=23%  Similarity=0.399  Sum_probs=63.2

Q ss_pred             ecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        400 FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       400 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      ...|+.+.|.|.+.|.|.|.+.|++++..+.......  .......|.|.++..+|+|.|.|.|.|..|..+..+.|.|
T Consensus         6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             ccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            4669999999999999999999999998775433322  2234578999999999999999999999998877776653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.28  E-value=1.8e-11  Score=85.18  Aligned_cols=70  Identities=20%  Similarity=0.304  Sum_probs=52.5

Q ss_pred             EEEEEEeccCCCceEEEEECCEEee--------cCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EEEEEE
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQ--------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTFTI   83 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~~~~l   83 (591)
                      |+|.|.+.|.|.|.+.|+|++....        ...++.+  .. ..+|.|.+++.+|+|.|.|.|.|..|.. +.++.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~--~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL--LS-NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE--ec-CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            5799999999999999999743211        1233332  22 2479999999999999999999999977 555665


Q ss_pred             EE
Q psy12425         84 NI   85 (591)
Q Consensus        84 ~v   85 (591)
                      .|
T Consensus        78 ~~   79 (79)
T cd05734          78 TV   79 (79)
T ss_pred             eC
Confidence            53

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.28  E-value=2.6e-11  Score=83.25  Aligned_cols=65  Identities=22%  Similarity=0.410  Sum_probs=49.2

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCC----CcceeEEEEEEcCCCcc
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASN----VDTAPYRVVAENDLGMD  470 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~c~a~n~~g~~  470 (591)
                      +.|.|.+.|.|.|.+.|++++..+.......+........|.|..+..    +|.|.|+|.|.|..|..
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA   69 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence            468999999999999999999876432222223333457888887642    46899999999999976

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.27  E-value=3.1e-11  Score=86.11  Aligned_cols=78  Identities=28%  Similarity=0.524  Sum_probs=62.4

Q ss_pred             cccceeccccEEEEEEE-cCCCCCeeEEecCCccCCCC-CceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee-e
Q psy12425        300 RNANAIQNHNAQFQCTI-TGCPKPTISWLKGSREITPS-ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS-T  376 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~-~  376 (591)
                      .+..+.+|+.+.|.|.+ .|.|.+.+.|++++..+... .++.+...+   +|.|.++..+|+|.|+|.|.|..|... .
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   80 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDG---NLLIAEARKSDEGTYKCVATNMVGERESA   80 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCC---EEEEeECCcccCEEEEEEEEeccCceeee
Confidence            45667899999999998 79999999999998887653 344443333   799999999999999999999998764 3


Q ss_pred             eeEE
Q psy12425        377 KAEL  380 (591)
Q Consensus       377 ~~~l  380 (591)
                      .+.|
T Consensus        81 ~~~l   84 (86)
T cd05724          81 AARL   84 (86)
T ss_pred             eEEE
Confidence            3443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.26  E-value=4.9e-11  Score=86.51  Aligned_cols=82  Identities=27%  Similarity=0.412  Sum_probs=62.1

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCc--eEEEEeCCeEEEEEcce-----ecccceEEEEEEEe
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR--HHIFAEGDTYTLIINSV-----YGVDADEYVCRAVN  369 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~g~y~c~a~n  369 (591)
                      ..+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  +.+..++   ++.|.++     .+.|.|.|+|.|.|
T Consensus         4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            344566678899999999999999999999999988865433  3333333   4666665     58899999999999


Q ss_pred             C-Ccce-eeeeEEE
Q psy12425        370 K-GGVK-STKAELI  381 (591)
Q Consensus       370 ~-~g~~-~~~~~l~  381 (591)
                      . .|.. +..+.|.
T Consensus        81 ~~~G~~~s~~~~l~   94 (95)
T cd05722          81 DSLGSIVSRTARLT   94 (95)
T ss_pred             CccCcEEEeeeEEe
Confidence            9 8876 4444443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.24  E-value=5.1e-11  Score=84.23  Aligned_cols=72  Identities=13%  Similarity=0.230  Sum_probs=55.7

Q ss_pred             eeeecCCeEEEEEEeccCCCceEEEEECCEEeec--------------CCceeEEE---eCCeEEEEEcccCCCCceEEE
Q psy12425          5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQS--------------DDRFKFTV---LDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      +.+.+|++|+|.|.+.+.+.+.+.|+++++....              ..|+.+..   ..+..+|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            6789999999999999999999999987743211              12222222   334578999999999999999


Q ss_pred             EEEEcCCee
Q psy12425         68 VNLSNSSGS   76 (591)
Q Consensus        68 c~~~n~~g~   76 (591)
                      |.+.|..+.
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999987655

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>smart00410 IG_like Immunoglobulin like

Probab=99.24  E-value=2.6e-10  Score=81.88  Aligned_cols=84  Identities=30%  Similarity=0.499  Sum_probs=71.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC-CEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN-GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+....++.........+|.|.+++..|+|.|.|.+.+..+.....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00410        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            5678999999999999999888899999998 888876666666665556799999999999999999999888877666


Q ss_pred             EEEEE
Q psy12425         81 FTINI   85 (591)
Q Consensus        81 ~~l~v   85 (591)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00410       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            76665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.24  E-value=2.6e-10  Score=81.88  Aligned_cols=84  Identities=30%  Similarity=0.499  Sum_probs=71.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC-CEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN-GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.+.+.+.+.|+++ +..+....++.........+|.|.+++..|+|.|.|.+.+..+.....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00409        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            5678999999999999999888899999998 888876666666665556799999999999999999999888877666


Q ss_pred             EEEEE
Q psy12425         81 FTINI   85 (591)
Q Consensus        81 ~~l~v   85 (591)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00409       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            76665

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.24  E-value=3.1e-11  Score=86.25  Aligned_cols=80  Identities=21%  Similarity=0.333  Sum_probs=63.0

Q ss_pred             ceeecCCCeEEEEEeeec-----cCCCeEEEeeCCeEeeec--cceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        397 TAYFDKGENVVVKIPFTG-----YPKPKITWYRDNEVIESG--GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      ...+.+|+.+.|.|.+.+     .|.+.|.|++++..+...  ....+..  ....|.|.++..+|+|.|.|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            345678999999999998     689999999998764321  1122222  2468999999999999999999999999


Q ss_pred             cceEEEEEe
Q psy12425        470 DSAIVKIQI  478 (591)
Q Consensus       470 ~~~~~~~~v  478 (591)
                      ....+.|.|
T Consensus        86 ~~~~~~L~v   94 (94)
T cd05756          86 MKVSISLTV   94 (94)
T ss_pred             EEEEEEEEC
Confidence            888877764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.24  E-value=4.3e-11  Score=84.21  Aligned_cols=76  Identities=25%  Similarity=0.343  Sum_probs=56.8

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeCCe---Ee-eeccce-EEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRDNE---VI-ESGGHF-HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~~~---~~-~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      |+.+.|.|.+.|.|.|.+.|++++.   .+ .....+ ..........|.|.++..+|+|.|.|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            6789999999999999999999742   11 111110 001112346899999999999999999999999988888776


Q ss_pred             e
Q psy12425        478 I  478 (591)
Q Consensus       478 v  478 (591)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.23  E-value=4e-11  Score=82.56  Aligned_cols=70  Identities=20%  Similarity=0.433  Sum_probs=55.6

Q ss_pred             eccccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS  375 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~  375 (591)
                      .++++.+.+|+.+.|.|.+.|.|.| .|.|++++..+...  ..    .....|.|.++  .|.|.|.|.|.|..|...
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~   74 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA----PSPSVLNVPGL--NETSKFSCEAHNAKGVTT   74 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC----CCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence            3456778999999999999999999 79999999887541  11    12236888877  478999999999999664

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.23  E-value=6.8e-11  Score=78.85  Aligned_cols=65  Identities=22%  Similarity=0.307  Sum_probs=51.1

Q ss_pred             EEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeee
Q psy12425        310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK  377 (591)
Q Consensus       310 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~  377 (591)
                      +.|.|.+.|.|.|.+.|++++..+..... ....++  .+|.|.++..+|+|.|+|.|.|........
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~   65 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVDG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKN   65 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeCC--CEEEECcCCHHHCEEEEEEEEccccceEee
Confidence            46899999999999999999988765422 122233  379999999999999999999976554433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.23  E-value=4.5e-11  Score=83.38  Aligned_cols=73  Identities=15%  Similarity=0.143  Sum_probs=57.3

Q ss_pred             eeeeecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-EEE
Q psy12425          4 ALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS-GTF   81 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-~~~   81 (591)
                      ...|.+|++++|.|.+.+ .+.+.+.|+|+|..+...        .....|.|.+++.+|+|.|+|.+.+..|... ..+
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~   79 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPV   79 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCceecCCCE
Confidence            446999999999999854 567789999999876421        1234799999999999999999999988653 334


Q ss_pred             EEE
Q psy12425         82 TIN   84 (591)
Q Consensus        82 ~l~   84 (591)
                      .|.
T Consensus        80 ~i~   82 (83)
T cd05753          80 SIT   82 (83)
T ss_pred             EEE
Confidence            444

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.22  E-value=3.4e-10  Score=88.82  Aligned_cols=116  Identities=14%  Similarity=0.200  Sum_probs=81.7

Q ss_pred             EEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCC
Q psy12425        349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDN  426 (591)
Q Consensus       349 ~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~  426 (591)
                      +|.|.+++..|+|.|.|.+.+..|.......|.|..+|.+...+.   ......|..+.|.|.+.|. |. +.|.|++++
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~---~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g   78 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLE---KLVSMIEEPQTLICHIAGYYPLDVQVEWTREP   78 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCC---CceeecCCcEEEEEEECCCCCCCeEEEEEECC
Confidence            689999999999999999999888888889999999888765442   2223368889999999986 54 489999998


Q ss_pred             eEeee-----cc-c---eEEEecC---CeeEEEEeccCCCcceeEEEEEEcCC
Q psy12425        427 EVIES-----GG-H---FHVETSE---RHAILTIRDASNVDTAPYRVVAENDL  467 (591)
Q Consensus       427 ~~~~~-----~~-~---~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~  467 (591)
                      .....     .. .   .....++   -.+.|.+..-..++...|+|.+.+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          79 PGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            54211     11 0   1111111   13455665555556779999998764

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.22  E-value=3.2e-11  Score=84.74  Aligned_cols=72  Identities=17%  Similarity=0.155  Sum_probs=56.3

Q ss_pred             ceeeeecCCeEEEEEEe-ccCCCceEEEEECCEEee--cCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425          3 NALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQ--SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      +++.|.+|+.+.|.|.. .|.|.+.|.|++++.++.  .+.+. +.. .....|.|.+++.+|+|.|.|.|.|....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~-~~~-~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR-FVS-QTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe-EEe-CCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            46789999999999976 678999999999987642  22332 222 22348999999999999999999987543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.20  E-value=3.6e-10  Score=79.26  Aligned_cols=83  Identities=18%  Similarity=0.293  Sum_probs=68.2

Q ss_pred             eeeeecCCeEEEEEEeccCCCce-EEEEECCEEeecCCceeEEEeC-----CeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPME-VSLTKNGRVVQSDDRFKFTVLD-----DYIIIFIKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      .++|.+|+++.|.|.+.+.|+|+ +.|.+++..+.......+....     -.+.|.|.+++.+|.|.|+|.|.|..+..
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            57899999999999999999997 9999998866544332222222     23789999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy12425         78 SGTFTINIT   86 (591)
Q Consensus        78 ~~~~~l~v~   86 (591)
                      +.++.|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            888888875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>KOG0196|consensus

Probab=99.18  E-value=4.8e-10  Score=105.95  Aligned_cols=134  Identities=25%  Similarity=0.306  Sum_probs=105.8

Q ss_pred             CeeEEEEeccCCCcceeEEEEEEcCCCcc----ceEEEEEec---CCCCCCCCCeeeeecCCeeEEEeeccccCCCccee
Q psy12425        442 RHAILTIRDASNVDTAPYRVVAENDLGMD----SAIVKIQIS---DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNIT  514 (591)
Q Consensus       442 ~~~~l~i~~~~~~~~g~y~c~a~n~~g~~----~~~~~~~v~---~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~  514 (591)
                      ....+.+.+|.+...|+|.+.|.|.+..-    .....+.+.   ..|++...+++...+.++++|+|..|..++| .+.
T Consensus       396 t~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png-~il  474 (996)
T KOG0196|consen  396 TETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNG-VIL  474 (996)
T ss_pred             ccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCC-cce
Confidence            46789999999999999999999987533    223334333   3566667788888899999999998876666 699


Q ss_pred             eEEEEeeeCCCCce-EEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEecc
Q psy12425        515 NYIVEKREHPMSSW-IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG  576 (591)
Q Consensus       515 ~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~  576 (591)
                      .|++.|.+...... ........+..+|.+|.|++.|.|+|+|+..+|.|..|....+.|.+.
T Consensus       475 dYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~  537 (996)
T KOG0196|consen  475 DYEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS  537 (996)
T ss_pred             eEEEEEeeccccccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence            99999998753222 223445567899999999999999999999999999999987766664

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.17  E-value=2.4e-10  Score=81.12  Aligned_cols=79  Identities=15%  Similarity=0.249  Sum_probs=58.7

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECC--EEe----ecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEE-cCCee
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--RVV----QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS-NSSGS   76 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~-n~~g~   76 (591)
                      .+.+.+|+++.|.|.. +.|.+.+.|+|.+  ...    ....++.  ..+  ..|.|.+++++|+|.|.|.+. |..+.
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~--~~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~   79 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI--HTE--RGLLLRSLQRSDAGVYTCTAVEHSFSQ   79 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE--Eec--CeEEEeeCChhHCEEEEEEEEccCCeE
Confidence            4678999999999997 4888999999843  221    1222332  222  369999999999999999998 56666


Q ss_pred             eEEEEEEEEec
Q psy12425         77 VSGTFTINITG   87 (591)
Q Consensus        77 ~~~~~~l~v~~   87 (591)
                      ....++|.|..
T Consensus        80 ~~~~~~l~v~~   90 (91)
T cd05871          80 TLAKYTLHVIE   90 (91)
T ss_pred             EEEEEEEEEec
Confidence            67778888764

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.17  E-value=7e-10  Score=78.32  Aligned_cols=71  Identities=15%  Similarity=0.273  Sum_probs=56.9

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEe--------ecCCceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV--------QSDDRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      +++++.+|+++.|+|.+.+.....+.|++.+..+        ..+.|+.... .+...+|.|.+++.+|+|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            5799999999999999988766778888766432        3456776654 455678999999999999999999753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.16  E-value=1.9e-10  Score=79.40  Aligned_cols=70  Identities=21%  Similarity=0.494  Sum_probs=55.5

Q ss_pred             EEEEEeeec-cCCCeEEEeeCCeEeeecc----ceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        406 VVVKIPFTG-YPKPKITWYRDNEVIESGG----HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       406 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      +.|+|.+.+ .|.+.+.|+++|..+....    ++.+........|.|.++...|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            468999875 6888999999998885322    233333445688999999999999999999999998876654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.16  E-value=1.5e-10  Score=81.72  Aligned_cols=76  Identities=21%  Similarity=0.257  Sum_probs=59.1

Q ss_pred             CCeEEEEEeeecc--CCCeEEEeeCCeEeeeccc---eEE--EecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        403 GENVVVKIPFTGY--PKPKITWYRDNEVIESGGH---FHV--ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       403 g~~~~l~c~~~~~--p~~~v~W~~~~~~~~~~~~---~~~--~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      |+.+.|.|.+.+.  |.+.+.|.+++..+.....   ...  ........|+|.+++..|+|.|+|.|.|..|..+.+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6789999999999  8899999987765432111   011  11123578999999999999999999999999988888


Q ss_pred             EEe
Q psy12425        476 IQI  478 (591)
Q Consensus       476 ~~v  478 (591)
                      |.+
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.14  E-value=2.4e-10  Score=76.25  Aligned_cols=63  Identities=25%  Similarity=0.389  Sum_probs=52.0

Q ss_pred             cCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCe
Q psy12425          9 EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG   75 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g   75 (591)
                      +|+++.|.|.+.+.|.+.+.|++++..+..  ...  .......|.|.+++..|.|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNR--LSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCE--EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            589999999998899999999999988862  222  223445899999999999999999988754

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.14  E-value=4.3e-10  Score=79.19  Aligned_cols=72  Identities=32%  Similarity=0.537  Sum_probs=58.5

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee-eEEEEE
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS-VSGTFT   82 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~-~~~~~~   82 (591)
                      +..+.+|+++.|.|.+.+.|...+.|++++..+.....          .|.|..+..+|.|.|+|.+.+..+. .+..+.
T Consensus         8 ~~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~   77 (80)
T PF13895_consen    8 PQSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN   77 (80)
T ss_dssp             SSEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence            46789999999999999998899999999988763321          1777889999999999999996653 355566


Q ss_pred             EEE
Q psy12425         83 INI   85 (591)
Q Consensus        83 l~v   85 (591)
                      |.|
T Consensus        78 v~V   80 (80)
T PF13895_consen   78 VTV   80 (80)
T ss_dssp             EEE
T ss_pred             eeC
Confidence            665

...

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.14  E-value=4.7e-10  Score=80.50  Aligned_cols=81  Identities=25%  Similarity=0.376  Sum_probs=57.8

Q ss_pred             CeEEeecccccee---ccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEccee-cccceEEEEEEE
Q psy12425        293 PEIIVPLRNANAI---QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY-GVDADEYVCRAV  368 (591)
Q Consensus       293 p~~~~~~~~~~~~---~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~a~  368 (591)
                      |.|...+.+..+.   .+..+.|.|.+.|.|.|.+.|++++..+...........++  .|.|.++. .+|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence            4445444544333   34679999999999999999999998874322222222222  68888876 489999999999


Q ss_pred             eCCccee
Q psy12425        369 NKGGVKS  375 (591)
Q Consensus       369 n~~g~~~  375 (591)
                      |..|...
T Consensus        80 N~~G~~~   86 (91)
T cd04967          80 NIVGTVL   86 (91)
T ss_pred             cCCCEEE
Confidence            9999764

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.13  E-value=4.4e-10  Score=78.76  Aligned_cols=77  Identities=21%  Similarity=0.284  Sum_probs=57.7

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeCCeEeeecc----ceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCC--ccceEEEE
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRDNEVIESGG----HFHVETSERHAILTIRDASNVDTAPYRVVAENDLG--MDSAIVKI  476 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g--~~~~~~~~  476 (591)
                      |+.+.|.|.+.+.|.+.+.|.+++.......    ...+........|.|.+++.+|+|.|.|.|.|..+  ..+.++.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            6789999999999999999998775432111    11111222367899999999999999999999876  55677777


Q ss_pred             Eec
Q psy12425        477 QIS  479 (591)
Q Consensus       477 ~v~  479 (591)
                      .|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.13  E-value=2.5e-10  Score=79.46  Aligned_cols=69  Identities=28%  Similarity=0.563  Sum_probs=51.3

Q ss_pred             EEEEEEEcCCCCCeeEEecCCccCC--------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeeeEE
Q psy12425        310 AQFQCTITGCPKPTISWLKGSREIT--------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL  380 (591)
Q Consensus       310 ~~l~c~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~l  380 (591)
                      +.|.|.+.|.|.|.+.|++++....        ...++.+..++   +|.|.++..+|+|.|.|.|.|..|.. +..+.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG---SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC---eEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            4799999999999999998643211        22334333333   79999999999999999999999976 444444


Q ss_pred             E
Q psy12425        381 I  381 (591)
Q Consensus       381 ~  381 (591)
                      .
T Consensus        78 ~   78 (79)
T cd05734          78 T   78 (79)
T ss_pred             e
Confidence            3

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.13  E-value=2e-10  Score=78.58  Aligned_cols=66  Identities=15%  Similarity=0.336  Sum_probs=53.0

Q ss_pred             eEEeeccccceeccccEEEEEEEcCCCC-CeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        294 EIIVPLRNANAIQNHNAQFQCTITGCPK-PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       294 ~~~~~~~~~~~~~g~~~~l~c~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+...+....+.+|+.+.|.|.+.+.|. ..+.|++++..+..          ....|.|.++ .+|+|.|+|.|.|.
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            4455556677899999999999999876 47999999877621          1236889999 99999999999874

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.13  E-value=1.4e-09  Score=77.29  Aligned_cols=88  Identities=25%  Similarity=0.399  Sum_probs=67.9

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCC--CceEEEEe----CCeEEEEEcceeccc-ceEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPS--ARHHIFAE----GDTYTLIINSVYGVD-ADEY  363 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y  363 (591)
                      ||.+ .......+.+|+.+.|.|.+.+.|.| .|.|..++..+..+  .++.+...    +...+|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            4555 44466778999999999999888876 57887776666443  46666543    467799999998767 7999


Q ss_pred             EEEEEeCCcceeeeeEE
Q psy12425        364 VCRAVNKGGVKSTKAEL  380 (591)
Q Consensus       364 ~c~a~n~~g~~~~~~~l  380 (591)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999988766554

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.13  E-value=6e-10  Score=78.34  Aligned_cols=80  Identities=15%  Similarity=0.234  Sum_probs=60.5

Q ss_pred             eeeeecCCeEEEEEEec-----------cCCCceEEEEECCEEeecCCc-----eeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          4 ALYIPEGDNTKVKIFYA-----------GDQPMEVSLTKNGRVVQSDDR-----FKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~-----------~~p~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      .+.+.+|+.+.|.|...           ......+.|+|++..+.....     .++...++  .|.|..+..+|+|.|.
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~   86 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYT   86 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEE
Confidence            56799999999999961           123458999999755544321     24444444  8999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEE
Q psy12425         68 VNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        68 c~~~n~~g~~~~~~~l~v   85 (591)
                      |.++|.......++.|+|
T Consensus        87 C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          87 CVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEECCCCcceEEEEEEEC
Confidence            999999877777776654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.13  E-value=4.1e-10  Score=79.15  Aligned_cols=78  Identities=12%  Similarity=0.118  Sum_probs=58.4

Q ss_pred             CCeEEEEEEeccCC--CceEEEEECCEEeecC---CceeE---EEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425         10 GDNTKVKIFYAGDQ--PMEVSLTKNGRVVQSD---DRFKF---TVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus        10 G~~~~l~C~~~~~p--~~~v~W~~~~~~~~~~---~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |+++.|.|.+.+++  ...+.|.+++..+...   ...+.   .......+|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            89999999998755  4578999887643211   11011   1122357899999999999999999999999888888


Q ss_pred             EEEEec
Q psy12425         82 TINITG   87 (591)
Q Consensus        82 ~l~v~~   87 (591)
                      .|.|.+
T Consensus        81 ~~~V~~   86 (86)
T cd05862          81 IVIVHE   86 (86)
T ss_pred             EEEEeC
Confidence            888863

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.12  E-value=2e-10  Score=80.55  Aligned_cols=71  Identities=10%  Similarity=0.178  Sum_probs=56.9

Q ss_pred             ceeeeecCCeEEEEEE-eccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCce-EEEEEEEcCCe
Q psy12425          3 NALYIPEGDNTKVKIF-YAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG-DYTVNLSNSSG   75 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~c~~~n~~g   75 (591)
                      +.+.|.+|+.+.|.|. ..|.|.|.|.|++++...-.. ..++....+ ..|.|.+++++|.| .|.|.|.|...
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~-GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQN-GNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCC-ceEEEEEEehhhCCCCeEEEEEcccc
Confidence            5789999999999997 689999999999887553332 234444443 48999999999999 89999998753

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.11  E-value=1.2e-09  Score=77.94  Aligned_cols=80  Identities=23%  Similarity=0.438  Sum_probs=64.6

Q ss_pred             eecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEE-EecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        399 YFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV-ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       399 ~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      .+..|..+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++..+|.|.|.|.|.|..|....++.|.
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            456799999999999999999999999988764443332 2234456899999999999999999999999987777665


Q ss_pred             e
Q psy12425        478 I  478 (591)
Q Consensus       478 v  478 (591)
                      +
T Consensus        85 v   85 (85)
T cd05729          85 V   85 (85)
T ss_pred             C
Confidence            3

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.09  E-value=6e-10  Score=78.55  Aligned_cols=73  Identities=18%  Similarity=0.239  Sum_probs=56.2

Q ss_pred             eeeeecCCeEEEEEEe-cc----CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425          4 ALYIPEGDNTKVKIFY-AG----DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~-~~----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      +..+.+|.+..|.|.- .+    .+.+.+.||||++++....+ ++....+...|.|.++.++|+|.|+|.+.+..|..
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~-~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNE-KFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCc-ceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            4568899999999973 22    46779999999999875532 22232234479999999999999999999987654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.08  E-value=1.4e-09  Score=78.10  Aligned_cols=81  Identities=17%  Similarity=0.338  Sum_probs=59.5

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecCC--------ccCCCCCceEEEEe-CCeEEEEEcceecccceEEEEEEEeC
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKGS--------REITPSARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--------~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      +++.+.+|+++.|.|.+.+.|.+.+.|++.+        .......++.+... ....+|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            4667899999999999999999999998632        22223445555333 35578999999999999999999874


Q ss_pred             CcceeeeeEEE
Q psy12425        371 GGVKSTKAELI  381 (591)
Q Consensus       371 ~g~~~~~~~l~  381 (591)
                      .+ ....+.|.
T Consensus        85 ~~-~~~~~~l~   94 (95)
T cd07701          85 PV-KTSKAYLT   94 (95)
T ss_pred             cC-ccEEEEEE
Confidence            32 24444443

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.05  E-value=2.2e-09  Score=74.50  Aligned_cols=67  Identities=22%  Similarity=0.417  Sum_probs=54.7

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCC-ceEEEEeCCeEEEEEcceecccceEEEEEEEeCC
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA-RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      .+..+..|+++.|.|.+.+ +.+.+.|++++..+.... ++.+ .++   .|.|.+++..|+|.|+|.|.+..
T Consensus         4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~~---~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YRD---GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-ECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence            4566889999999999864 678999999999887653 4433 333   59999999999999999998864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.03  E-value=7.3e-10  Score=73.66  Aligned_cols=61  Identities=21%  Similarity=0.329  Sum_probs=47.0

Q ss_pred             CCeEEEEEEe-ccCCCceEEEEECCEEeecCCceeEEEeCCe--EEEEEcccCCCCceEEEEEE
Q psy12425         10 GDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDY--IIIFIKEIRKEDAGDYTVNL   70 (591)
Q Consensus        10 G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~c~~   70 (591)
                      |++++|.|.+ .+.+...+.|+|++..+..............  ..|.|.+++.+|+|.|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            8999999999 7788899999999876544433333322222  13999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.02  E-value=2.2e-09  Score=75.94  Aligned_cols=76  Identities=24%  Similarity=0.343  Sum_probs=60.1

Q ss_pred             ccccceeccccEEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeee
Q psy12425        299 LRNANAIQNHNAQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK  377 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~  377 (591)
                      +....+..|+.++|.|.+.+ .|.+.+.|++++..+....   . .  ....|.|.++..+|+|.|.|.|.|..|....+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~-~--~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~   81 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---M-D--FNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT   81 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---c-c--cCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence            34566789999999999975 7888999999876653321   1 1  12379999999999999999999999988777


Q ss_pred             eEE
Q psy12425        378 AEL  380 (591)
Q Consensus       378 ~~l  380 (591)
                      +.|
T Consensus        82 ~~l   84 (85)
T cd05754          82 ATL   84 (85)
T ss_pred             EEE
Confidence            655

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.02  E-value=7.5e-09  Score=73.92  Aligned_cols=70  Identities=13%  Similarity=0.193  Sum_probs=55.3

Q ss_pred             cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEee--------eccceEEEec-CCeeEEEEeccCCCcceeEEEEEEc
Q psy12425        396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIE--------SGGHFHVETS-ERHAILTIRDASNVDTAPYRVVAEN  465 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n  465 (591)
                      ....+..|+++.|.|.+.+.|.+.+.|++++..+.        ...++.+... .....|.|.++..+|+|.|+|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            45667899999999999999999999998775431        2234443322 2467999999999999999999988

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.00  E-value=5.3e-09  Score=73.45  Aligned_cols=85  Identities=18%  Similarity=0.373  Sum_probs=68.6

Q ss_pred             ccceeecCCCeEEEEEeeeccCCCe-EEEeeCCeEeeeccceEEEecC-----CeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        395 RDTAYFDKGENVVVKIPFTGYPKPK-ITWYRDNEVIESGGHFHVETSE-----RHAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       395 ~~~~~~~~g~~~~l~c~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      .....+..|+.+.|.|.++++|.|+ +.|.+++..+.......+....     ..+.|.|..+..++.|.|+|.|.|..+
T Consensus        10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            3556789999999999999999998 9999988765432221122211     358899999999999999999999999


Q ss_pred             ccceEEEEEec
Q psy12425        469 MDSAIVKIQIS  479 (591)
Q Consensus       469 ~~~~~~~~~v~  479 (591)
                      ..+.++.|.+.
T Consensus        90 ~~s~tF~l~v~  100 (101)
T cd05860          90 SASVTFNVYVN  100 (101)
T ss_pred             eEEEEEEEEEe
Confidence            99999988875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.00  E-value=3.3e-09  Score=72.90  Aligned_cols=77  Identities=12%  Similarity=0.181  Sum_probs=58.8

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee--EEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV--SGT   80 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~--~~~   80 (591)
                      +.++|.+|+++.|.|...+. .+.+.|+++|..+..+.++.....    -|.|..+++.|+|.|.|.+.- .|-.  ...
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~E-~gf~~~~~~   77 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSEE-EGFQQLVAS   77 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEec-CCCeEEEEE
Confidence            57899999999999999865 669999999999876655544322    377999999999999999873 3433  333


Q ss_pred             EEEEE
Q psy12425         81 FTINI   85 (591)
Q Consensus        81 ~~l~v   85 (591)
                      ..|.|
T Consensus        78 y~l~v   82 (85)
T cd05872          78 YSLNV   82 (85)
T ss_pred             EEEEE
Confidence            44444

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.00  E-value=2.2e-09  Score=76.68  Aligned_cols=81  Identities=17%  Similarity=0.358  Sum_probs=58.9

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCC--ceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcc-eee
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV-KST  376 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~-~~~  376 (591)
                      ..+.+..|+.+.|.|.+.+ |.+.+.|++++..+....  ...+....  ..|.|.++..+|+|.|+|.|.+..+. ...
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence            3456788999999999987 888999999987765432  11222221  24999999999999999999876543 345


Q ss_pred             eeEEEEe
Q psy12425        377 KAELIIM  383 (591)
Q Consensus       377 ~~~l~v~  383 (591)
                      +..|.|.
T Consensus        81 ~~~l~V~   87 (89)
T cd04979          81 TYSLNVL   87 (89)
T ss_pred             EEEEEEe
Confidence            5666654

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.00  E-value=2.1e-09  Score=76.19  Aligned_cols=77  Identities=16%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             eeecCCCeEEEEEeeec-----cCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425        398 AYFDKGENVVVKIPFTG-----YPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA  472 (591)
Q Consensus       398 ~~~~~g~~~~l~c~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~  472 (591)
                      ..+..|....|.|...+     +|.|.+.|++++.++...... +.   ....|.|.++..+|+|.|+|.|.|..|....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            45677999999998753     257899999999988754433 22   5678999999999999999999999888766


Q ss_pred             EEEEEe
Q psy12425        473 IVKIQI  478 (591)
Q Consensus       473 ~~~~~v  478 (591)
                      .+...+
T Consensus        81 ~~t~t~   86 (92)
T cd05757          81 NVTRTI   86 (92)
T ss_pred             EEEEEE
Confidence            554443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.98  E-value=1.2e-08  Score=80.11  Aligned_cols=116  Identities=13%  Similarity=0.281  Sum_probs=75.4

Q ss_pred             eeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CC-CeeE
Q psy12425        248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PK-PTIS  325 (591)
Q Consensus       248 ~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~  325 (591)
                      +|.|.+++..|+|.|.|.+.+..|..   .....+.+.     .+|.+...+.......|..+.|.|.+.|. |. +.|.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~---~~~~~l~v~-----~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~   73 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQA---QQIIQLSVS-----EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVE   73 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcce---eeEEEEEEe-----cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEE
Confidence            58899999999999999998865543   234455554     46777665555445578899999999995 54 5899


Q ss_pred             EecCCccCCC----CCceE---EE--EeCC---eEEEEEcceecccceEEEEEEEeCC
Q psy12425        326 WLKGSREITP----SARHH---IF--AEGD---TYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       326 W~~~~~~~~~----~~~~~---~~--~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      |++++.....    .....   ..  .++.   ...|.+..-...+...|+|.+.+..
T Consensus        74 W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          74 WTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             EEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            9998754221    01111   11  1221   1245555444445678999997753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>TIGR00864 PCC polycystin cation channel protein

Probab=98.95  E-value=0.0002  Score=79.58  Aligned_cols=263  Identities=16%  Similarity=0.094  Sum_probs=144.9

Q ss_pred             CcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeecc-c-cceeccccEEEEEEEcCCCCCeeEEecCCccCCC
Q psy12425        258 RQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR-N-ANAIQNHNAQFQCTITGCPKPTISWLKGSREITP  335 (591)
Q Consensus       258 ~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~-~-~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~  335 (591)
                      ..|.+++.|.|..|...   .+..+.+..+..  ...+..... . ..+..|..+.|.-.+.........|..++..-..
T Consensus      1754 G~y~VtVta~N~vss~~---~s~~V~VqepV~--GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~ 1828 (2740)
T TIGR00864      1754 GLHLVTMKAFNELGSAN---ASEEVDVQEPIS--GLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM 1828 (2740)
T ss_pred             ceEEEEEEEEccccccc---eeEEEEEEeccc--cceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc
Confidence            45777888899988553   345555554332  122221111 1 1344577777777754333447778776433111


Q ss_pred             CCceEEEEeCCeEEEEEcceecccceEEEEE--EEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeee
Q psy12425        336 SARHHIFAEGDTYTLIINSVYGVDADEYVCR--AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFT  413 (591)
Q Consensus       336 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~--a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~  413 (591)
                               +....     .+..+.|.|+..  |.|..+....+..+.|+.+..-....  .....+..|+.++|.+...
T Consensus      1829 ---------gk~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~--as~~~~~~n~~v~fsa~l~ 1892 (2740)
T TIGR00864      1829 ---------GKHAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELK--ASKKIAAIGEKVEFQILLA 1892 (2740)
T ss_pred             ---------cceeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEe--cccccccCCCEEEEEEEec
Confidence                     11111     345677877765  88999988888888888876432211  1223456799999999998


Q ss_pred             ccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeeee-
Q psy12425        414 GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED-  492 (591)
Q Consensus       414 ~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~-  492 (591)
                      ..+...+.|..++..-.      +...+.  . ....-..-..|..++.|.|.++.......+.|..+   ...+.+.. 
T Consensus      1893 ~GS~Vtf~w~fGdgs~~------~~t~~~--t-~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~---V~gL~I~~~ 1960 (2740)
T TIGR00864      1893 AGSAVNFRLQIGGAAPE------VLQPGP--R-FSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEA---VRGLQIPDC 1960 (2740)
T ss_pred             CCCceEEEEEeCCCCce------eecCCC--e-EEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEe---ccceEecCC
Confidence            88888999987643211      111111  1 11223344567888999999999887777777543   22232211 


Q ss_pred             -------ecCCeeEEEeeccccCCCcceeeEEEEeeeC---CCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425        493 -------IGHDSLALVWRAPIWDGGSNITNYIVEKREH---PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR  562 (591)
Q Consensus       493 -------~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~  562 (591)
                             .........++     .|.++ .|.+++...   ++..|...  +....|+..   ....|.++|+|.|.+|.
T Consensus      1961 c~~~~~~g~~~tF~A~v~-----~g~~V-~f~W~f~~~~~~g~~~~~~~--G~~vty~~~---~~G~~~I~v~A~N~l~s 2029 (2740)
T TIGR00864      1961 CAAGIATGEEKNFTANVQ-----RGKPV-AFAWTFDLHHLHGDSLVIHM--GKDVSYTAE---AAGLLEIQLGAFNALGA 2029 (2740)
T ss_pred             cccceecCceEEEEEEEe-----cCCce-EEEEEeeecccCCCcceeec--CCceEEccC---CCcEEEEEEEEEcccCc
Confidence                   11112222232     23232 355543321   12222222  222344432   34479999999999997


Q ss_pred             CC
Q psy12425        563 SD  564 (591)
Q Consensus       563 ~~  564 (591)
                      ..
T Consensus      2030 ~n 2031 (2740)
T TIGR00864      2030 EN 2031 (2740)
T ss_pred             cc
Confidence            53

Note: this model has been restricted to the amino half because for technical reasons.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.93  E-value=6.3e-09  Score=70.35  Aligned_cols=65  Identities=8%  Similarity=-0.003  Sum_probs=48.9

Q ss_pred             EEEEEEecc-CCCceEEEEECCEEeecCCceeEE--EeCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425         13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFT--VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus        13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      +.|+|...+ +|++.|.||||+++|.........  ......+|.|.....+|.+.|+|.|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            789999865 899999999999999653211000  00123479999999999999999999997754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.91  E-value=8.9e-09  Score=77.23  Aligned_cols=73  Identities=21%  Similarity=0.267  Sum_probs=57.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCE---E---e--------ecCCceeEEEe--CCeEEEEEcccCCCCceE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGR---V---V--------QSDDRFKFTVL--DDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~---~---~--------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~   65 (591)
                      |..+.+.+|++|.|.|.+.+.+...+.|+|...   .   +        ....|+.+...  ....+|.|.+++.+|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~   84 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV   84 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence            678999999999999999887888999998531   1   0        12244544432  356899999999999999


Q ss_pred             EEEEEEcCC
Q psy12425         66 YTVNLSNSS   74 (591)
Q Consensus        66 Y~c~~~n~~   74 (591)
                      |.|.+.+..
T Consensus        85 Y~C~~~~~~   93 (109)
T cd04983          85 YFCALSESG   93 (109)
T ss_pred             EEEEEecCC
Confidence            999998764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PHA03376 BARF1; Provisional

Probab=98.91  E-value=1.2e-07  Score=73.18  Aligned_cols=123  Identities=15%  Similarity=0.284  Sum_probs=80.6

Q ss_pred             ccceeccccEEEEEEEc---CCCCCeeEEecCCc-----------------cCCCCCceEEEEeCCeEEEEEcceecccc
Q psy12425        301 NANAIQNHNAQFQCTIT---GCPKPTISWLKGSR-----------------EITPSARHHIFAEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~---~~p~~~v~W~~~~~-----------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  360 (591)
                      .+....|+.+.|+|...   ..+...|.|++.+.                 +.....+..+..+.+..+|.|.+++..|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            34567899999999975   23556799999432                 11112234455566888999999999999


Q ss_pred             eEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCC
Q psy12425        361 DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN  426 (591)
Q Consensus       361 g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~  426 (591)
                      |.|+|..............|.+..+-...+...   ......-+..++.|.+.|.|.|.++|.-+.
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~---~~dFp~~~~~~i~C~sggfP~P~~~Wle~~  162 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSE---RSQFPDFSVLTVTCTVNAFPHPHVQWLMPE  162 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeeecceEEEEec---cccCCCCCeeEEEEecCCcCCchheecccc
Confidence            999999987654444444444433222221110   001122566789999889999999998764

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.89  E-value=1e-08  Score=71.53  Aligned_cols=65  Identities=12%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             cceeccccEEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        302 ANAIQNHNAQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      ..+.+|+.+.|.|.+.+ .+...+.|++++..+...        .....|.|.+++.+|+|.|+|.|.+..|..
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            35789999999999854 566789999988765321        123479999999999999999999988855

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.87  E-value=1.8e-08  Score=70.62  Aligned_cols=73  Identities=14%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             eEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeC-C----eEEEEEcccCCCCceEEEEEEEcCCeee--EEEEEE
Q psy12425         12 NTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLD-D----YIIIFIKEIRKEDAGDYTVNLSNSSGSV--SGTFTI   83 (591)
Q Consensus        12 ~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~-~----~~~l~i~~~~~~d~g~Y~c~~~n~~g~~--~~~~~l   83 (591)
                      .++|.|.+.| .|.+.++|+|+|+.+...........+ .    ...|.|.....+|.|.|+|.|.|..-..  ..+++|
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            4789999987 688899999999988644221111111 1    2468888877888899999999875433  444444


Q ss_pred             E
Q psy12425         84 N   84 (591)
Q Consensus        84 ~   84 (591)
                      .
T Consensus        81 ~   81 (82)
T cd05759          81 D   81 (82)
T ss_pred             c
Confidence            3

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.86  E-value=8.9e-09  Score=72.50  Aligned_cols=73  Identities=18%  Similarity=0.215  Sum_probs=57.2

Q ss_pred             cceeecCCCeEEEEEee-eccCCCeEEEeeCCeEe--eeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        396 DTAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVI--ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      ....+.+|..+.|.|.. .|.|.+.+.|++++..+  ..+.+..  .....+.|.+.+++..|.|.|.|.|.|.....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~--~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRF--VSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeE--EeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            34557889999999976 68899999999998754  2222222  23357899999999999999999999987654

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.85  E-value=3.9e-08  Score=72.94  Aligned_cols=77  Identities=14%  Similarity=0.236  Sum_probs=55.1

Q ss_pred             CCceeeeecCCeEEEEEEeccC----CCceEEEE---------------ECCEEeec-C----CceeEEE--eCCeEEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGD----QPMEVSLT---------------KNGRVVQS-D----DRFKFTV--LDDYIIIF   54 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~----p~~~v~W~---------------~~~~~~~~-~----~~~~~~~--~~~~~~l~   54 (591)
                      +|..+.+..|+.+.|.|.+...    +...|.|.               ++|+.... .    +|..+..  ..+..+|.
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            4778999999999999999653    34689993               34444321 1    2333321  12346899


Q ss_pred             EcccCCCCceEEEEEEEcCCeee
Q psy12425         55 IKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus        55 i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      |.+++.+|.|.|+|.+.|..+..
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCCcC
Confidence            99999999999999999886533

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.85  E-value=2.8e-08  Score=74.43  Aligned_cols=76  Identities=20%  Similarity=0.390  Sum_probs=52.9

Q ss_pred             CCceeeeecCCeEEEEEEeccCC----CceEEEEEC----CE--Ee---e------cCCce--eEEE----eCCeEEEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQ----PMEVSLTKN----GR--VV---Q------SDDRF--KFTV----LDDYIIIFI   55 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~----~~--~~---~------~~~~~--~~~~----~~~~~~l~i   55 (591)
                      +|+.+++.+|++++|.|.+...+    ...|.|++-    +.  .+   .      ...++  ++..    ..+..+|.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            58899999999999999986533    346999751    21  11   0      11122  2221    123468999


Q ss_pred             cccCCCCceEEEEEEEcCCee
Q psy12425         56 KEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus        56 ~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      .+++.+|+|.|.|.+.|..+.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCCC
Confidence            999999999999999987653

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.84  E-value=1.6e-08  Score=67.21  Aligned_cols=63  Identities=35%  Similarity=0.578  Sum_probs=51.9

Q ss_pred             CCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       402 ~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      +|+.+.|.|.+.+.+.+.+.|++++..+.  ..  .........|.|.++...|.|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ES--NRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC--CC--CEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            37889999999899999999999988776  11  12223567899999999999999999999865

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.84  E-value=2e-08  Score=71.05  Aligned_cols=71  Identities=18%  Similarity=0.320  Sum_probs=52.9

Q ss_pred             ceeccccEEEEEEEcCCCCCeeEEecCCccC-C-------------CCCceEEEE---eCCeEEEEEcceecccceEEEE
Q psy12425        303 NAIQNHNAQFQCTITGCPKPTISWLKGSREI-T-------------PSARHHIFA---EGDTYTLIINSVYGVDADEYVC  365 (591)
Q Consensus       303 ~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~-~-------------~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~c  365 (591)
                      .+..|+.++|.|.+.+.+.+.+.|++++... .             ...+.....   .++.++|+|.+++.+|+|.|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            4678999999999999999999998654221 1             111222222   3445789999999999999999


Q ss_pred             EEEeCCcc
Q psy12425        366 RAVNKGGV  373 (591)
Q Consensus       366 ~a~n~~g~  373 (591)
                      .+.|..+.
T Consensus        83 ~v~~~~~~   90 (94)
T cd07690          83 EVEDKKEE   90 (94)
T ss_pred             EECCccce
Confidence            99887654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.82  E-value=5e-08  Score=72.43  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             cCCeEEEEEEeccCC------CceEEEEECC-----E-Ee--ecC--------CceeEEE---eCCeEEEEEcccCCCCc
Q psy12425          9 EGDNTKVKIFYAGDQ------PMEVSLTKNG-----R-VV--QSD--------DRFKFTV---LDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p------~~~v~W~~~~-----~-~~--~~~--------~~~~~~~---~~~~~~l~i~~~~~~d~   63 (591)
                      .|++|+|.|.+...+      .+.|.|+|..     . .+  ..+        .+.++..   .....+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            499999999997643      5699999862     1 11  011        1112221   23457999999999999


Q ss_pred             eEEEEEEEcCCeeeEEEEEEEEec
Q psy12425         64 GDYTVNLSNSSGSVSGTFTINITG   87 (591)
Q Consensus        64 g~Y~c~~~n~~g~~~~~~~l~v~~   87 (591)
                      |.|.|.+.+..+..+..+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999877778888888864

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.82  E-value=1.9e-08  Score=75.21  Aligned_cols=72  Identities=17%  Similarity=0.165  Sum_probs=54.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCE--E---e----------e---cCCceeEEEeC-CeEEEEEcccCCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGR--V---V----------Q---SDDRFKFTVLD-DYIIIFIKEIRKED   62 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~--~---~----------~---~~~~~~~~~~~-~~~~l~i~~~~~~d   62 (591)
                      |..+.+.+|++++|.|.+.+ +...+.|||...  .   |          .   ...++...... ...+|.|.+++++|
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D   83 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED   83 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence            67899999999999999987 778899999531  1   1          0   01344433322 45789999999999


Q ss_pred             ceEEEEEEEcCC
Q psy12425         63 AGDYTVNLSNSS   74 (591)
Q Consensus        63 ~g~Y~c~~~n~~   74 (591)
                      +|.|.|.+.+..
T Consensus        84 sg~Y~Ca~~~~~   95 (110)
T cd05899          84 SAVYLCASSLGG   95 (110)
T ss_pred             CEEEEEEeeCCC
Confidence            999999998653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.82  E-value=2.9e-08  Score=73.63  Aligned_cols=72  Identities=14%  Similarity=0.200  Sum_probs=53.9

Q ss_pred             CceeeeecCCeEEEEEEeccCC-CceEEEEECC--E---Eee---------cCCceeEEEeCCeEEEEEcccCCCCceEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ-PMEVSLTKNG--R---VVQ---------SDDRFKFTVLDDYIIIFIKEIRKEDAGDY   66 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y   66 (591)
                      |..+.+.+|++|+|.|.+.+.. ...+.|+|..  +   .|.         ...++.....+....|.|.+++++|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y   86 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY   86 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence            7788999999999999997654 6789999842  1   111         01344444444557899999999999999


Q ss_pred             EEEEEcC
Q psy12425         67 TVNLSNS   73 (591)
Q Consensus        67 ~c~~~n~   73 (591)
                      .|.+.+.
T Consensus        87 ~Ca~~~~   93 (106)
T cd04980          87 YCQQYGT   93 (106)
T ss_pred             EEEEeCC
Confidence            9998754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.82  E-value=1.5e-08  Score=71.19  Aligned_cols=70  Identities=21%  Similarity=0.362  Sum_probs=56.4

Q ss_pred             cccceeccccEEEEEE-EcCCCCCeeEEecCCcc-CCCCCceEEEEeCCeEEEEEcceecccce-EEEEEEEeCCc
Q psy12425        300 RNANAIQNHNAQFQCT-ITGCPKPTISWLKGSRE-ITPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRAVNKGG  372 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~-~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~a~n~~g  372 (591)
                      +.+.+.+|+.+.|.|. ..|.|.|.|.|++++.. +....++.+..+|   .|.|.++...|.| .|.|.|.|...
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEcccc
Confidence            5567899999999997 69999999999987654 3334455554455   7999999999999 79999998753

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.81  E-value=6e-08  Score=71.34  Aligned_cols=79  Identities=14%  Similarity=0.311  Sum_probs=55.7

Q ss_pred             cCCeEEEEEEeccCC------------CceEEEEEC--CE---Ee---------ecC--CceeEEE---eCCeEEEEEcc
Q psy12425          9 EGDNTKVKIFYAGDQ------------PMEVSLTKN--GR---VV---------QSD--DRFKFTV---LDDYIIIFIKE   57 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p------------~~~v~W~~~--~~---~~---------~~~--~~~~~~~---~~~~~~l~i~~   57 (591)
                      .|++|+|.|.+....            .+.|.|+|-  |+   .+         ..+  +|+.+..   ..+..+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            499999999997532            468999984  21   11         111  2333332   23557999999


Q ss_pred             cCCCCceEEEEEEEcCCeeeEEEEEEEEec
Q psy12425         58 IRKEDAGDYTVNLSNSSGSVSGTFTINITG   87 (591)
Q Consensus        58 ~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~   87 (591)
                      ++.+|+|.|+|.+.+.....+..+.|.|..
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999997766667777777753

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.81  E-value=3e-08  Score=69.70  Aligned_cols=77  Identities=16%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             CCeEEEEEeeeccCC--CeEEEeeCCeEeeec---cc---eEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425        403 GENVVVKIPFTGYPK--PKITWYRDNEVIESG---GH---FHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       403 g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~---~~---~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  474 (591)
                      |+.+.|.|.+.+.+.  ..+.|..++......   ..   .........+.|.|.+++..|+|.|+|.|.|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            678999999987664  478998877543211   11   0011123467899999999999999999999999888888


Q ss_pred             EEEec
Q psy12425        475 KIQIS  479 (591)
Q Consensus       475 ~~~v~  479 (591)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            87764

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.81  E-value=5.4e-08  Score=70.55  Aligned_cols=80  Identities=14%  Similarity=0.360  Sum_probs=56.9

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecCCccC--------CCCCceEEEE-eCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREI--------TPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      +++.+.+|+.+.|.|.+.+.+.+.+.|++.+...        ....++.+.. .+...+|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            3566889999999999998888999998632211        1224554432 234568999999999999999999876


Q ss_pred             CcceeeeeEE
Q psy12425        371 GGVKSTKAEL  380 (591)
Q Consensus       371 ~g~~~~~~~l  380 (591)
                      .. ....+.|
T Consensus        85 ~~-~~~~~~~   93 (95)
T cd05717          85 PV-QTAKATV   93 (95)
T ss_pred             CC-ceEEEEE
Confidence            43 3444444

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.79  E-value=5.9e-08  Score=68.18  Aligned_cols=70  Identities=29%  Similarity=0.589  Sum_probs=53.6

Q ss_pred             cceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcc-eeeeeEE
Q psy12425        302 ANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV-KSTKAEL  380 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~-~~~~~~l  380 (591)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..+...        ..  .+.+..+..+|.|.|+|.+.+..+. .+..+.|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------~~--~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v   78 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------QN--GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV   78 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------SS--EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------ee--eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence            55789999999999999999999999987554421        11  1777899999999999999996653 2444444


Q ss_pred             E
Q psy12425        381 I  381 (591)
Q Consensus       381 ~  381 (591)
                      .
T Consensus        79 ~   79 (80)
T PF13895_consen   79 T   79 (80)
T ss_dssp             E
T ss_pred             e
Confidence            4

...

>smart00409 IG Immunoglobulin

Probab=98.78  E-value=1.5e-07  Score=67.23  Aligned_cols=82  Identities=26%  Similarity=0.554  Sum_probs=66.3

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecC-CccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE  379 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~  379 (591)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....++.........+|.|.++...|+|.|.|.+.+..+.......
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            34567899999999999988899999998 77776556666666655678999999999999999999988777655555


Q ss_pred             EEE
Q psy12425        380 LII  382 (591)
Q Consensus       380 l~v  382 (591)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            544

>smart00410 IG_like Immunoglobulin like

Probab=98.78  E-value=1.5e-07  Score=67.23  Aligned_cols=82  Identities=26%  Similarity=0.554  Sum_probs=66.3

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecC-CccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE  379 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~  379 (591)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....++.........+|.|.++...|+|.|.|.+.+..+.......
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            34567899999999999988899999998 77776556666666655678999999999999999999988777655555


Q ss_pred             EEE
Q psy12425        380 LII  382 (591)
Q Consensus       380 l~v  382 (591)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            544

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>KOG4258|consensus

Probab=98.78  E-value=3.1e-07  Score=87.89  Aligned_cols=136  Identities=14%  Similarity=0.234  Sum_probs=92.1

Q ss_pred             EEecCceEEEEecCCCCCCCcceeeEEEEEEec--------------CCCceEEEEee--------cCcceEEEcCCcCC
Q psy12425         99 SEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI--------------SMPHWICISTT--------CHDTTFIVQGLTEG  156 (591)
Q Consensus        99 ~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~--------------~~~~~~~~~~~--------~~~~~~~i~~l~~~  156 (591)
                      .....+++.++|..-...+.....+|.+.+.+.              +...|......        ....-+.+.+|.|.
T Consensus       497 ~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~  576 (1025)
T KOG4258|consen  497 TVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPW  576 (1025)
T ss_pred             EEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCcc
Confidence            445678899999765544455667788877654              23345443321        12235778999999


Q ss_pred             cEEEEEEEEEccCCC-CCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc
Q psy12425        157 QEYLFHVMAVNENGM-GPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA  235 (591)
Q Consensus       157 ~~y~~~~~a~n~~g~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~  235 (591)
                      +.|-|-|.+....-. ......+.....++....|.+|...-....+.+.+.|+|.+|..+++ .++.|.+.+.......
T Consensus       577 TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG-~lt~Ylv~wer~~~~~  655 (1025)
T KOG4258|consen  577 TQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNG-NLTHYLVVWERQAEDG  655 (1025)
T ss_pred             ceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCC-ceeEEEEEEEeccCCc
Confidence            999999988732211 11114445666677778899998887777777889999999987765 6888888777655443

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.77  E-value=8.4e-08  Score=70.41  Aligned_cols=76  Identities=17%  Similarity=0.256  Sum_probs=52.9

Q ss_pred             CCeEEEEEEeccC---CCceEEEEECCE--Ee---------e------cCCceeEEE---eCCeEEEEEcccCCCCceEE
Q psy12425         10 GDNTKVKIFYAGD---QPMEVSLTKNGR--VV---------Q------SDDRFKFTV---LDDYIIIFIKEIRKEDAGDY   66 (591)
Q Consensus        10 G~~~~l~C~~~~~---p~~~v~W~~~~~--~~---------~------~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y   66 (591)
                      |++|+|.|.+...   ....+.|+|...  .+         .      ...|..+..   ..+..+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            8899999998632   234688988541  11         1      012333321   13447899999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEE
Q psy12425         67 TVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        67 ~c~~~n~~g~~~~~~~l~v   85 (591)
                      .|.+.+..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999988777777777776

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.77  E-value=3.9e-08  Score=65.28  Aligned_cols=61  Identities=20%  Similarity=0.463  Sum_probs=48.4

Q ss_pred             cccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEEEeCCeE--EEEEcceecccceEEEEEE
Q psy12425        307 NHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFAEGDTY--TLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       307 g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~c~a  367 (591)
                      |+.+.|.|.+ .+.+...+.|.+++..............+...  .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6889999999 88888999999998877655444444333322  3999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.77  E-value=2.3e-08  Score=71.45  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=51.5

Q ss_pred             eeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      ..|.+|++|+|.|... .+...+.|+|+|......   .....+....|.|.+++++|+|.|+|...+.
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            4688999999999886 778899999998754321   1112344568999999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.76  E-value=3.9e-08  Score=73.24  Aligned_cols=71  Identities=21%  Similarity=0.316  Sum_probs=53.9

Q ss_pred             eeeecCCeEEEEEEeccC-CCceEEEEECCE-----Ee------------ecCCceeEEEeC--CeEEEEEcccCCCCce
Q psy12425          5 LYIPEGDNTKVKIFYAGD-QPMEVSLTKNGR-----VV------------QSDDRFKFTVLD--DYIIIFIKEIRKEDAG   64 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~-p~~~v~W~~~~~-----~~------------~~~~~~~~~~~~--~~~~l~i~~~~~~d~g   64 (591)
                      +.+.+|++++|.|.+.+. +...+.|+|...     .+            ....|+.+....  ...+|+|.+++.+|+|
T Consensus         1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            578999999999999876 678999998432     11            112344444433  5679999999999999


Q ss_pred             EEEEEEEcCCe
Q psy12425         65 DYTVNLSNSSG   75 (591)
Q Consensus        65 ~Y~c~~~n~~g   75 (591)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999987664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.75  E-value=1.2e-07  Score=70.41  Aligned_cols=79  Identities=22%  Similarity=0.257  Sum_probs=56.8

Q ss_pred             cCCeEEEEEEeccCC------CceEEEEECCE------E--eec----------CCceeEEE-eCCeEEEEEcccCCCCc
Q psy12425          9 EGDNTKVKIFYAGDQ------PMEVSLTKNGR------V--VQS----------DDRFKFTV-LDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p------~~~v~W~~~~~------~--~~~----------~~~~~~~~-~~~~~~l~i~~~~~~d~   63 (591)
                      .|++|+|.|.+...|      ...|.|+|...      .  +..          ..|+.+.. .....+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            599999999987653      45799998531      1  110          12333221 12346899999999999


Q ss_pred             eEEEEEEEcCCeeeEEEEEEEEec
Q psy12425         64 GDYTVNLSNSSGSVSGTFTINITG   87 (591)
Q Consensus        64 g~Y~c~~~n~~g~~~~~~~l~v~~   87 (591)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999888888888888763

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.75  E-value=5.9e-08  Score=70.15  Aligned_cols=78  Identities=17%  Similarity=0.285  Sum_probs=56.4

Q ss_pred             ecCCeEEEEEEecc-CCCceEEEEECCEEeec-------------CCc--eeEEEeCCeEEEEEcccCCCCceEEEEEEE
Q psy12425          8 PEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQS-------------DDR--FKFTVLDDYIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus         8 ~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~-------------~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      ..|++|+|.|.... .....+.|+|....+..             ..+  .++....+..+|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999999865 55668999986532210             111  234444556899999999999999999999


Q ss_pred             cCCeee-EEEEEEEE
Q psy12425         72 NSSGSV-SGTFTINI   85 (591)
Q Consensus        72 n~~g~~-~~~~~l~v   85 (591)
                      +..|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            887665 55566665

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.74  E-value=8.5e-08  Score=69.93  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=52.0

Q ss_pred             eeeecCCeEEEEEEeccC--CCceEEEEECCE--E---e---------ecCCceeEEEeCCeEEEEEcccCCCCceEEEE
Q psy12425          5 LYIPEGDNTKVKIFYAGD--QPMEVSLTKNGR--V---V---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTV   68 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~--p~~~v~W~~~~~--~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c   68 (591)
                      +.|.+|++|+|.|.+.+.  ....+.|||...  .   |         ....++..........|.|.+++++|+|.|.|
T Consensus         1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C   80 (98)
T cd04984           1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC   80 (98)
T ss_pred             CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence            468999999999999765  556799998431  1   1         01235555555567889999999999999999


Q ss_pred             EEEcC
Q psy12425         69 NLSNS   73 (591)
Q Consensus        69 ~~~n~   73 (591)
                      .+.+.
T Consensus        81 ~~~~~   85 (98)
T cd04984          81 QVWDS   85 (98)
T ss_pred             EEccC
Confidence            98753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.74  E-value=5.8e-08  Score=68.94  Aligned_cols=77  Identities=12%  Similarity=0.165  Sum_probs=55.2

Q ss_pred             eeecCCCeEEEEEeeeccCCCeEEEeeCCe--Eee----eccceEEEecCCeeEEEEeccCCCcceeEEEEEE-cCCCcc
Q psy12425        398 AYFDKGENVVVKIPFTGYPKPKITWYRDNE--VIE----SGGHFHVETSERHAILTIRDASNVDTAPYRVVAE-NDLGMD  470 (591)
Q Consensus       398 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~~----~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~-n~~g~~  470 (591)
                      ....+|+.+.|.|.. +.|.|.+.|++.+.  ...    ...++..    ....|.|.+++++|+|.|.|.|. |..+..
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~   80 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH----TERGLLLRSLQRSDAGVYTCTAVEHSFSQT   80 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE----ecCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence            456789999999997 58899999998432  111    1223322    23569999999999999999998 566655


Q ss_pred             ceEEEEEec
Q psy12425        471 SAIVKIQIS  479 (591)
Q Consensus       471 ~~~~~~~v~  479 (591)
                      ...+.|.|.
T Consensus        81 ~~~~~l~v~   89 (91)
T cd05871          81 LAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEe
Confidence            566666654

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.74  E-value=1.9e-07  Score=66.06  Aligned_cols=70  Identities=14%  Similarity=0.338  Sum_probs=55.7

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecCCccC--------CCCCceEEEE-eCCeEEEEEcceecccceEEEEEEEe
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREI--------TPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      +++.+.+|+++.|+|.+.+.....+.|++.+..+        ....++.+.. ++..++|.|.+++.+|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            4567889999999999998877778887655332        3455676665 56788999999999999999999865

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.72  E-value=9.4e-08  Score=72.10  Aligned_cols=75  Identities=20%  Similarity=0.406  Sum_probs=52.1

Q ss_pred             CCceeeeecCCeEEEEEEeccCC----CceEEEEECC------EEee----------cCCce--eEEE----eCCeEEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQ----PMEVSLTKNG------RVVQ----------SDDRF--KFTV----LDDYIIIF   54 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~~------~~~~----------~~~~~--~~~~----~~~~~~l~   54 (591)
                      .|..+.+.+|++++|.|.+....    ...+.|++..      ..+.          ...++  ++..    ..+..+|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            48899999999999999986532    2569998632      1110          11121  1222    12347899


Q ss_pred             EcccCCCCceEEEEEEEcCCe
Q psy12425         55 IKEIRKEDAGDYTVNLSNSSG   75 (591)
Q Consensus        55 i~~~~~~d~g~Y~c~~~n~~g   75 (591)
                      |.+++.+|+|.|.|.+.|...
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCC
Confidence            999999999999999997754

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.72  E-value=2e-07  Score=67.76  Aligned_cols=86  Identities=44%  Similarity=0.691  Sum_probs=68.7

Q ss_pred             CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEecee--eeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT--RFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       482 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      |.+|.++.+.....+++.|+|+++.... ..+..|.+.+.......|......  ....+.+.+|.|++.|.|+|+|.+.
T Consensus         1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~   79 (93)
T cd00063           1 PSPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG   79 (93)
T ss_pred             CcCCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECC
Confidence            4567777777777899999999875433 357799999987765677766543  6789999999999999999999999


Q ss_pred             CcCCCCCCC
Q psy12425        560 YGRSDPSTT  568 (591)
Q Consensus       560 ~G~~~~s~~  568 (591)
                      .|.|.++..
T Consensus        80 ~~~~~~s~~   88 (93)
T cd00063          80 GGESPPSES   88 (93)
T ss_pred             CccCCCccc
Confidence            888877663

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.71  E-value=1.7e-07  Score=69.41  Aligned_cols=79  Identities=15%  Similarity=0.229  Sum_probs=56.2

Q ss_pred             cCCeEEEEEEeccCC----------CceEEEEEC--CEEe------------ecC--CceeEE---EeCCeEEEEEcccC
Q psy12425          9 EGDNTKVKIFYAGDQ----------PMEVSLTKN--GRVV------------QSD--DRFKFT---VLDDYIIIFIKEIR   59 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p----------~~~v~W~~~--~~~~------------~~~--~~~~~~---~~~~~~~l~i~~~~   59 (591)
                      .|++|+|.|.+...+          ...|.|+|.  ++..            ...  +|+.+.   ......+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            389999999997643          367999985  2110            111  232232   12345789999999


Q ss_pred             CCCceEEEEEEEcCCeeeEEEEEEEEec
Q psy12425         60 KEDAGDYTVNLSNSSGSVSGTFTINITG   87 (591)
Q Consensus        60 ~~d~g~Y~c~~~n~~g~~~~~~~l~v~~   87 (591)
                      .+|+|.|.|.+.......+..+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999998777778888888864

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.71  E-value=1.7e-07  Score=68.64  Aligned_cols=76  Identities=16%  Similarity=0.250  Sum_probs=53.5

Q ss_pred             CeEEEEEEeccCC---CceEEEEECCEE---------------eecCCceeEEEeC---CeEEEEEcccCCCCceEEEEE
Q psy12425         11 DNTKVKIFYAGDQ---PMEVSLTKNGRV---------------VQSDDRFKFTVLD---DYIIIFIKEIRKEDAGDYTVN   69 (591)
Q Consensus        11 ~~~~l~C~~~~~p---~~~v~W~~~~~~---------------~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~c~   69 (591)
                      ++|+|.|.+...+   ...|.|+|....               +....+.++...+   ...+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5799999997644   457999995421               1111123333322   357999999999999999999


Q ss_pred             EEc-CCeeeEEEEEEEEe
Q psy12425         70 LSN-SSGSVSGTFTINIT   86 (591)
Q Consensus        70 ~~n-~~g~~~~~~~l~v~   86 (591)
                      +.+ ..|.....+.|.|.
T Consensus        81 v~~~~~g~~~~~~~l~V~   98 (98)
T cd05718          81 FATFPQGNRQKVTTLTVL   98 (98)
T ss_pred             EEeCCCCcEEEEEEEEeC
Confidence            874 66777888888773

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.71  E-value=1e-07  Score=69.17  Aligned_cols=82  Identities=13%  Similarity=0.168  Sum_probs=55.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCE-----Ee---ecC---------CceeEEEeCCeEEEEEcccCCCCce
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGR-----VV---QSD---------DRFKFTVLDDYIIIFIKEIRKEDAG   64 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~-----~~---~~~---------~~~~~~~~~~~~~l~i~~~~~~d~g   64 (591)
                      |.+..+.+|+++.|.|.....+-..+.|+|+..     .|   ...         .+.+..... +.+|.|.+++.+|+|
T Consensus         5 ~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-ngSL~I~~v~~~D~G   83 (105)
T cd05774           5 LVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-NGSLLIQNVTQKDTG   83 (105)
T ss_pred             ccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-CCcEEEecCCcccCE
Confidence            345668899999999987555556999999631     11   000         011112222 238999999999999


Q ss_pred             EEEEEEEcCC-eeeEEEEEEE
Q psy12425         65 DYTVNLSNSS-GSVSGTFTIN   84 (591)
Q Consensus        65 ~Y~c~~~n~~-g~~~~~~~l~   84 (591)
                      .|.|.+.+.. ......+.+.
T Consensus        84 ~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          84 FYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEEEEeCCccEEEEEEEEE
Confidence            9999999887 3445555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.71  E-value=8.5e-08  Score=72.64  Aligned_cols=71  Identities=13%  Similarity=0.189  Sum_probs=55.2

Q ss_pred             CceeeeecCCeEEEEEEecc--CCCceEEEEEC--CEE----e--e-----------cCCceeEEEeC--CeEEEEEccc
Q psy12425          2 PNALYIPEGDNTKVKIFYAG--DQPMEVSLTKN--GRV----V--Q-----------SDDRFKFTVLD--DYIIIFIKEI   58 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~--~~~----~--~-----------~~~~~~~~~~~--~~~~l~i~~~   58 (591)
                      |..+.+.+|++|+|.|.+.+  .+.+.+.|+|.  |..    +  .           ...|+.+....  ....|+|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            67889999999999999977  67889999994  211    0  0           12455555444  5689999999


Q ss_pred             CCCCceEEEEEEEc
Q psy12425         59 RKEDAGDYTVNLSN   72 (591)
Q Consensus        59 ~~~d~g~Y~c~~~n   72 (591)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.69  E-value=2.8e-07  Score=70.12  Aligned_cols=84  Identities=19%  Similarity=0.376  Sum_probs=59.6

Q ss_pred             CceeeeecCCeEEEEEEec-cCCCceEEEEECCE-----Eee--------------cCCceeEEEe--CCeEEEEEcccC
Q psy12425          2 PNALYIPEGDNTKVKIFYA-GDQPMEVSLTKNGR-----VVQ--------------SDDRFKFTVL--DDYIIIFIKEIR   59 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~~~-----~~~--------------~~~~~~~~~~--~~~~~l~i~~~~   59 (591)
                      |..+.+.+|+++.|.|... ......+.|++...     .+.              ...+..+...  ....+|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            6789999999999999998 55677999998321     111              0123333333  235799999999


Q ss_pred             CCCceEEEEEEEcCC-eeeEEEEEEEE
Q psy12425         60 KEDAGDYTVNLSNSS-GSVSGTFTINI   85 (591)
Q Consensus        60 ~~d~g~Y~c~~~n~~-g~~~~~~~l~v   85 (591)
                      .+|+|.|.|.+.... ......+.|.|
T Consensus        88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   88 PSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            999999999998773 23344455554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.66  E-value=1.5e-07  Score=68.01  Aligned_cols=74  Identities=18%  Similarity=0.313  Sum_probs=51.7

Q ss_pred             CCeEEEEEEeccCCCceEEEEECCEEe-----e-----------cCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNGRVV-----Q-----------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~~~~-----~-----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      |++|+|.|.+...+...+.|+|+....     .           ...+.++....+ .+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEcC
Confidence            899999999987777799999976321     1           011112333333 68999999999999999999887


Q ss_pred             Ceee-EEEEEEE
Q psy12425         74 SGSV-SGTFTIN   84 (591)
Q Consensus        74 ~g~~-~~~~~l~   84 (591)
                      .|.. ...+.|.
T Consensus        80 ~~~~~~~~~~l~   91 (92)
T cd05741          80 NGVTENAKFFLR   91 (92)
T ss_pred             CCcEEEEEEEEE
Confidence            6443 3334443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=98.64  E-value=2.6e-07  Score=65.76  Aligned_cols=77  Identities=36%  Similarity=0.719  Sum_probs=65.2

Q ss_pred             cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCc-eEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCC
Q psy12425         96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH-WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP  173 (591)
Q Consensus        96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~  173 (591)
                      +.+......++.|+|.+|. .++..+..|.|.+....... +...........+.+.+|.+++.|.|+++|.+..|.+.
T Consensus         6 l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g~g~   83 (85)
T PF00041_consen    6 LSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDGEGP   83 (85)
T ss_dssp             EEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTEEEE
T ss_pred             eEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCcCcC
Confidence            6777789999999999987 66778999999999887766 66665566666999999999999999999999888654

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.64  E-value=1.8e-07  Score=66.13  Aligned_cols=74  Identities=14%  Similarity=0.145  Sum_probs=54.7

Q ss_pred             eecCCCeEEEEEee-e----ccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceE
Q psy12425        399 YFDKGENVVVKIPF-T----GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAI  473 (591)
Q Consensus       399 ~~~~g~~~~l~c~~-~----~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~  473 (591)
                      .+..|....|.|.- .    ..+.+.+.|++++.++......... ..+...|.|.++..+|+|.|+|.|.+..|.....
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~   84 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-LKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN   84 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-cCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence            34668889999973 2    3467799999999988644322222 1234579999999999999999999998765433

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.61  E-value=2.8e-07  Score=63.44  Aligned_cols=69  Identities=14%  Similarity=0.316  Sum_probs=56.6

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      +...+..|..+.|.|...+. .+.+.|++++..+..+.++.....|    |.|..+.+.|+|.|.|.+. ..|..
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~   72 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQ   72 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCe
Confidence            35668899999999999876 5599999999988776677666666    8899999999999999986 33444

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.60  E-value=4.9e-07  Score=70.63  Aligned_cols=85  Identities=19%  Similarity=0.250  Sum_probs=63.0

Q ss_pred             eeeeecCCeEEEEEEec-cCCCceEEEEECCEEe----------ecC--Ccee-EEEeCCeEEEEEcccCCCCceEEEEE
Q psy12425          4 ALYIPEGDNTKVKIFYA-GDQPMEVSLTKNGRVV----------QSD--DRFK-FTVLDDYIIIFIKEIRKEDAGDYTVN   69 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~~~~~----------~~~--~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~c~   69 (591)
                      .++|.+|++|.|.|... +...+.|.|+|..+.+          .++  +|.. +........|+|.+++.+|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            57899999999999984 6678899999964322          221  3444 23334457999999999999999999


Q ss_pred             EE-cCCe-eeEEEEEEEEecC
Q psy12425         70 LS-NSSG-SVSGTFTINITGL   88 (591)
Q Consensus        70 ~~-n~~g-~~~~~~~l~v~~~   88 (591)
                      .. -..| ..+....|.|...
T Consensus       104 F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEecCCCCCceeEEEEEEEch
Confidence            85 3445 6677788888764

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.59  E-value=2.4e-07  Score=62.71  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             EEEEEeee-ccCCCeEEEeeCCeEeeeccceEEEec---CCeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        406 VVVKIPFT-GYPKPKITWYRDNEVIESGGHFHVETS---ERHAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       406 ~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      +.|+|... |.|.+++.|++++.++..... .....   ...+.|.+.....+|.+.|+|.|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            68999985 789999999999999864321 11111   124578999999999999999999998865

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.59  E-value=6.4e-07  Score=65.62  Aligned_cols=79  Identities=13%  Similarity=0.163  Sum_probs=55.1

Q ss_pred             cCCeEEEEEEeccCC-------CceEEEEECC-----EE------------eecCCceeEEEeC-----CeEEEEEcccC
Q psy12425          9 EGDNTKVKIFYAGDQ-------PMEVSLTKNG-----RV------------VQSDDRFKFTVLD-----DYIIIFIKEIR   59 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p-------~~~v~W~~~~-----~~------------~~~~~~~~~~~~~-----~~~~l~i~~~~   59 (591)
                      .|++|.|.|.+.-.|       .+.|.|.|..     +.            +..+-+.++....     ...+|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            388999999976322       4789998741     11            1112222333322     35799999999


Q ss_pred             CCCceEEEEEEEcCCeeeEEEEEEEEec
Q psy12425         60 KEDAGDYTVNLSNSSGSVSGTFTINITG   87 (591)
Q Consensus        60 ~~d~g~Y~c~~~n~~g~~~~~~~l~v~~   87 (591)
                      .+|+|.|+|.+.......+..+.|.|..
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999998776677788888763

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.57  E-value=6.8e-07  Score=62.64  Aligned_cols=67  Identities=18%  Similarity=0.247  Sum_probs=47.8

Q ss_pred             EEEEEeeec-cCCCeEEEeeCCeEeeeccceEEEe-cC----CeeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425        406 VVVKIPFTG-YPKPKITWYRDNEVIESGGHFHVET-SE----RHAILTIRDASNVDTAPYRVVAENDLGMDSA  472 (591)
Q Consensus       406 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~  472 (591)
                      +.|.|.+.| .|.+.+.|+++|..+.......... .+    ..+.|.+.....++.+.|+|.|.|.......
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~   74 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGK   74 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCc
Confidence            689999987 6889999999998875432211111 11    1356778877788899999999998755533

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.57  E-value=9.8e-07  Score=66.82  Aligned_cols=73  Identities=18%  Similarity=0.262  Sum_probs=52.1

Q ss_pred             CCceeeeecCCeEEEEEEeccCC------CceEEEEECCE-----E-ee---------c--CCceeEE--EeCCeEEEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQ------PMEVSLTKNGR-----V-VQ---------S--DDRFKFT--VLDDYIIIFI   55 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p------~~~v~W~~~~~-----~-~~---------~--~~~~~~~--~~~~~~~l~i   55 (591)
                      .|..+.+.+|++|+|.|.+....      ...+.|+|...     . +.         .  .+|+.+.  .....++|+|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            48899999999999999885321      35689998531     1 10         0  1233332  2344589999


Q ss_pred             cccCCCCceEEEEEEEcC
Q psy12425         56 KEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus        56 ~~~~~~d~g~Y~c~~~n~   73 (591)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>TIGR00864 PCC polycystin cation channel protein

Probab=98.57  E-value=0.003  Score=70.78  Aligned_cols=274  Identities=14%  Similarity=0.136  Sum_probs=146.6

Q ss_pred             cEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCc
Q psy12425        259 QYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR  338 (591)
Q Consensus       259 ~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~  338 (591)
                      .|.+++.|.|..+...   .+..+.+.++    .-.+........+..|+.++|++.....+...+.|..++.....   
T Consensus      1841 ~ytV~L~AsN~vs~~~---~s~~~~VQe~----I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~--- 1910 (2740)
T TIGR00864      1841 TFAIRLNASNAVSGKS---ASREFFAEEP----IFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEV--- 1910 (2740)
T ss_pred             EEEEEEEEEcccCcce---eeeeEEEEEe----cceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCcee---
Confidence            4555677889886543   4455555521    11233333444577899999999988877889999775432110   


Q ss_pred             eEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCc-ccCCCCcccceeecCCCeEEEEEeeeccCC
Q psy12425        339 HHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK-FNVPPRFRDTAYFDKGENVVVKIPFTGYPK  417 (591)
Q Consensus       339 ~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~-~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~  417 (591)
                         ...+....   ..-..-..+.....|.|..+.......+.|..+-. ..+....  ...+..|+...|...+....+
T Consensus      1911 ---~t~~~t~~---HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c--~~~~~~g~~~tF~A~v~~g~~ 1982 (2740)
T TIGR00864      1911 ---LQPGPRFS---HSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCC--AAGIATGEEKNFTANVQRGKP 1982 (2740)
T ss_pred             ---ecCCCeEE---eecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCc--ccceecCceEEEEEEEecCCc
Confidence               01111111   12223344566777999988887777777765421 1111110  112467899999999877777


Q ss_pred             CeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeee-----e
Q psy12425        418 PKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE-----D  492 (591)
Q Consensus       418 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~-----~  492 (591)
                      ..+.|+..-..+..+..  +...+..-.+...   ..-.+..++.|.|..|..+....+.|+.+...   ..+.     .
T Consensus      1983 V~f~W~f~~~~~~g~~~--~~~~G~~vty~~~---~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~---~~L~~~p~~~ 2054 (2740)
T TIGR00864      1983 VAFAWTFDLHHLHGDSL--VIHMGKDVSYTAE---AAGLLEIQLGAFNALGAENITLQLEAQDALMD---AALQAGPQDC 2054 (2740)
T ss_pred             eEEEEEeeecccCCCcc--eeecCCceEEccC---CCcEEEEEEEEEcccCcccccEEEEEEeheee---EEEeecCcce
Confidence            78999865333322222  1112223333332   22345567778999999887777777765421   1111     0


Q ss_pred             ecCCeeEEE--eeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCc
Q psy12425        493 IGHDSLALV--WRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS  569 (591)
Q Consensus       493 ~~~~~v~l~--W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~  569 (591)
                      .....+.+.  +.+    + +.-..|.+.+-+.....   ..+.....+  .-.++|+ |.++|.|.|..........+
T Consensus      2055 ~~n~~v~f~~~~~~----~-~~~v~~~WDFGDGt~~~---~T~~~~~sH--tY~r~G~-Y~V~V~a~N~VS~~~a~~~i 2122 (2740)
T TIGR00864      2055 FTNKMAQFEAATSP----K-PNFMACHWDFGDGSAGQ---DTDEPRAEH--EYLHPGD-YRVQVNASNLVSFFSAHAEI 2122 (2740)
T ss_pred             ecCceEEEEEEEcc----C-CCcEEEEEEecCCCCcc---ccCCceeEE--EecCCcc-EEEEEEEEcceeeeeeEEEE
Confidence            111222222  321    1 12234555544322111   111111122  2256664 99999999999865444433

Note: this model has been restricted to the amino half because for technical reasons.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.57  E-value=7.7e-07  Score=64.79  Aligned_cols=75  Identities=12%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             CeEEEEEEeccCC---CceEEEEECCE-----Ee---e--------cC--CceeEEE--eCCeEEEEEcccCCCCceEEE
Q psy12425         11 DNTKVKIFYAGDQ---PMEVSLTKNGR-----VV---Q--------SD--DRFKFTV--LDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus        11 ~~~~l~C~~~~~p---~~~v~W~~~~~-----~~---~--------~~--~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      .+|+|.|......   ...|.|+|...     .+   .        ..  +|.++..  .....+|+|.+++.+|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~   80 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK   80 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence            3689999996543   44899998321     11   0        01  3444432  223568999999999999999


Q ss_pred             EEEEc-CCeeeEEEEEEEE
Q psy12425         68 VNLSN-SSGSVSGTFTINI   85 (591)
Q Consensus        68 c~~~n-~~g~~~~~~~l~v   85 (591)
                      |.+.+ ..|..+..+.|.|
T Consensus        81 C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEeCCCCCeeeEEEEEe
Confidence            99987 6676677777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.54  E-value=1.3e-06  Score=59.40  Aligned_cols=74  Identities=5%  Similarity=0.034  Sum_probs=49.5

Q ss_pred             EEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeC---CeEEEEEcccCCCCceEEEEEEEcCCee-eEEEEEEEEe
Q psy12425         13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLD---DYIIIFIKEIRKEDAGDYTVNLSNSSGS-VSGTFTINIT   86 (591)
Q Consensus        13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~c~~~n~~g~-~~~~~~l~v~   86 (591)
                      +.|.|.+.| .|++.|.|+|+++++............   ..++|.|..-..+|...|+|+|.|..-. ......|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            689999977 899999999999998654221111111   1256777655566666899999886422 3444556554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.52  E-value=8.1e-07  Score=62.80  Aligned_cols=79  Identities=14%  Similarity=0.213  Sum_probs=56.1

Q ss_pred             ccceeccccEEEEEEEc-----------CCCCCeeEEecCCccCCCCCc-----eEEEEeCCeEEEEEcceecccceEEE
Q psy12425        301 NANAIQNHNAQFQCTIT-----------GCPKPTISWLKGSREITPSAR-----HHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~-----------~~p~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      ...+.+|+.+.|.|...           ......+.|+|++........     ..+...+.  .|.|.++..+|+|.|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~   86 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYT   86 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEE
Confidence            35578999999999961           122347999998755443331     23333343  7999999999999999


Q ss_pred             EEEEeCCcceeeeeEEE
Q psy12425        365 CRAVNKGGVKSTKAELI  381 (591)
Q Consensus       365 c~a~n~~g~~~~~~~l~  381 (591)
                      |.+.|.......++.|.
T Consensus        87 C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          87 CVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EEECCCCcceEEEEEEE
Confidence            99999876666555554

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.51  E-value=2.1e-06  Score=62.86  Aligned_cols=78  Identities=17%  Similarity=0.284  Sum_probs=55.5

Q ss_pred             CCeEEEEEEeccCC-----------CceEEEEEC-----CE-----Ee----------ecC--CceeEEEe---CCeEEE
Q psy12425         10 GDNTKVKIFYAGDQ-----------PMEVSLTKN-----GR-----VV----------QSD--DRFKFTVL---DDYIII   53 (591)
Q Consensus        10 G~~~~l~C~~~~~p-----------~~~v~W~~~-----~~-----~~----------~~~--~~~~~~~~---~~~~~l   53 (591)
                      |++++|.|.+.-.|           .+.|.|++-     |+     .+          ...  +|..+...   .+..+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            78999999997433           348999873     11     11          111  23333211   234799


Q ss_pred             EEcccCCCCceEEEEEEEcCCeeeEEEEEEEEec
Q psy12425         54 FIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITG   87 (591)
Q Consensus        54 ~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~   87 (591)
                      .|.+++.+|+|.|+|.+.+.....+..+.|.|..
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999999999888888888888763

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.51  E-value=6.2e-07  Score=67.83  Aligned_cols=72  Identities=15%  Similarity=0.223  Sum_probs=53.7

Q ss_pred             CceeeeecCCeEEEEEEeccC-CCceEEEEECC--EE---e---------ecCCceeEEE--eCCeEEEEEcccCCCCce
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD-QPMEVSLTKNG--RV---V---------QSDDRFKFTV--LDDYIIIFIKEIRKEDAG   64 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g   64 (591)
                      |..+.+.+|++|+|.|.+... ....+.|+|..  ..   +         ...+|+.+..  ..+..+|.|.+++.+|+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg   85 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA   85 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence            678899999999999998753 56789999832  11   1         1124555542  345689999999999999


Q ss_pred             EEEEEEEcC
Q psy12425         65 DYTVNLSNS   73 (591)
Q Consensus        65 ~Y~c~~~n~   73 (591)
                      .|.|.+...
T Consensus        86 ~Y~C~~~~~   94 (116)
T cd07706          86 KYFCALSTL   94 (116)
T ss_pred             EEEEEEECC
Confidence            999999753

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.50  E-value=3.8e-07  Score=65.39  Aligned_cols=68  Identities=16%  Similarity=0.096  Sum_probs=48.4

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      ....|.+|++|+|.|.... +...+.|+|+|...................|.|..++++|+|.|+|...
T Consensus         8 p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           8 PSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            3456899999999998864 5678999998865321100000112234589999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.48  E-value=3e-07  Score=63.55  Aligned_cols=73  Identities=27%  Similarity=0.472  Sum_probs=47.9

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCC-CCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCP-KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      |.+...........+. +.|.|.+.+.+ .+.+.|+......   ............+|.|.++..+|.|.|+|.|.|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSF---NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEE---EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCce---eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            5555554444333344 99999999987 8899999110000   011111222344899999999999999999987

...

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.47  E-value=3.1e-07  Score=63.51  Aligned_cols=61  Identities=18%  Similarity=0.210  Sum_probs=42.5

Q ss_pred             cCCeEEEEEEeccCC-CceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEc
Q psy12425          9 EGDNTKVKIFYAGDQ-PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      .+..+.|.|.+.+.+ .+.++|+ +......  ............|.|.++..+|.|.|+|.|.|
T Consensus        14 ~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   14 SGGSVTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             TTEEEEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eceeEEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            333399999999876 8899999 1111111  11112223446899999999999999999986

...

>KOG0613|consensus

Probab=98.45  E-value=1.9e-05  Score=80.30  Aligned_cols=263  Identities=18%  Similarity=0.133  Sum_probs=161.6

Q ss_pred             eEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC
Q psy12425        197 VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS  276 (591)
Q Consensus       197 ~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s  276 (591)
                      .........+-..|..+..+++.....|.++.+..+...|..............  ...    |...+++.-..|.....
T Consensus       147 ~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~--~a~----~e~~v~~v~s~gqp~~~  220 (1205)
T KOG0613|consen  147 ESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDT--DAH----YESRVRAVVSAGQPEPL  220 (1205)
T ss_pred             cceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCccee--ccc----cceeEEEEEecCCCccc
Confidence            334445566777898888888888999999999888877765544332222222  222    33333333333443321


Q ss_pred             CCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEccee
Q psy12425        277 SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY  356 (591)
Q Consensus       277 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  356 (591)
                      .. ....      ...+.+...+.......+....|.|.+.+.+.+.+.|+.+.......       .-+..+..+.+-.
T Consensus       221 ~~-~~~~------g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~  286 (1205)
T KOG0613|consen  221 ER-WEIL------GELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDG  286 (1205)
T ss_pred             hh-hhhc------ccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccC
Confidence            11 1111      11222223334445667888899999988888888887654332221       1122256666777


Q ss_pred             cccceEEEEEEEeCCcceeeeeEEEEec----------------CCcccCCCCcccceeecCCCeEEEEEeeeccCCCe-
Q psy12425        357 GVDADEYVCRAVNKGGVKSTKAELIIMT----------------APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK-  419 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~-  419 (591)
                      +...+.|+|...+..+.....+...+..                +|................+..+.+.|...+.+.|. 
T Consensus       287 ~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~  366 (1205)
T KOG0613|consen  287 PEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDE  366 (1205)
T ss_pred             CccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCch
Confidence            7777888888887777665544433321                11111111112233456778899999999998886 


Q ss_pred             EEEeeCCeEeeecc--ceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEec
Q psy12425        420 ITWYRDNEVIESGG--HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS  479 (591)
Q Consensus       420 v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~  479 (591)
                      +.|++++.......  ...+........+.+.++.+.+.+.|.|.|.|..|.........+.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs  428 (1205)
T KOG0613|consen  367 AQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVS  428 (1205)
T ss_pred             heeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcc
Confidence            99999887665544  3334445567889999999999999999999999987544444443

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.45  E-value=2.7e-06  Score=61.07  Aligned_cols=76  Identities=16%  Similarity=0.253  Sum_probs=51.4

Q ss_pred             CeEEEEEEecc-CCC---ceEEEEECC----EEe-----------ecC--CceeEEE-eCCeEEEEEcccCCCCceEEEE
Q psy12425         11 DNTKVKIFYAG-DQP---MEVSLTKNG----RVV-----------QSD--DRFKFTV-LDDYIIIFIKEIRKEDAGDYTV   68 (591)
Q Consensus        11 ~~~~l~C~~~~-~p~---~~v~W~~~~----~~~-----------~~~--~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c   68 (591)
                      ..|+|.|.+.. .|.   .+|.|.|-.    ..+           ...  +|..+.. .-...+|.|.+++.+|+|.|+|
T Consensus         1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C   80 (99)
T cd05886           1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC   80 (99)
T ss_pred             CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence            36899999974 222   269998841    111           111  2333221 1123689999999999999999


Q ss_pred             EEEc-CCeeeEEEEEEEEe
Q psy12425         69 NLSN-SSGSVSGTFTINIT   86 (591)
Q Consensus        69 ~~~n-~~g~~~~~~~l~v~   86 (591)
                      .+.+ ..|..+..+.|.|.
T Consensus        81 ~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          81 EFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             EEEeCCCCCeEEEEEEEEC
Confidence            9998 67877888888873

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.44  E-value=1.8e-06  Score=64.72  Aligned_cols=72  Identities=14%  Similarity=0.256  Sum_probs=54.5

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecCCcc--C------------CCCCceEEEEe--CCeEEEEEcceecccceEE
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSRE--I------------TPSARHHIFAE--GDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~--~------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y  363 (591)
                      ..+.+.+|+++.|.|.+.+.+...+.|++....  .            ....++.+...  ...++|.|.+++.+|+|.|
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y   85 (109)
T cd04983           6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY   85 (109)
T ss_pred             CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence            456688999999999999878889999874321  0            12234444432  3678999999999999999


Q ss_pred             EEEEEeCC
Q psy12425        364 VCRAVNKG  371 (591)
Q Consensus       364 ~c~a~n~~  371 (591)
                      .|.+.+..
T Consensus        86 ~C~~~~~~   93 (109)
T cd04983          86 FCALSESG   93 (109)
T ss_pred             EEEEecCC
Confidence            99998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.43  E-value=3.1e-06  Score=58.91  Aligned_cols=62  Identities=11%  Similarity=0.152  Sum_probs=44.5

Q ss_pred             EEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCe------EEEEEcccCCCCceEEEEEEEcCCe
Q psy12425         13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDY------IIIFIKEIRKEDAGDYTVNLSNSSG   75 (591)
Q Consensus        13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~Y~c~~~n~~g   75 (591)
                      +.|.|.+.| .|++.|+|++||+.+..... .+...++.      ..|.|.....+|...|+|.|.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            689999988 69899999999998865432 22222221      3466655566677899999988753

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.42  E-value=1.5e-06  Score=62.08  Aligned_cols=74  Identities=9%  Similarity=0.084  Sum_probs=53.7

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      +|.+...+. ..+..|++|+|+|... .+...+.|+++|.......   ....+....+.|.+++++|+|.|+|.+.+.
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            355555443 4578999999999886 5677899999887543211   112233457999999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.42  E-value=2.8e-06  Score=61.64  Aligned_cols=76  Identities=22%  Similarity=0.221  Sum_probs=51.4

Q ss_pred             CCeEEEEEEeccCCC-ceEEEEECCE----Eee-----c--------CCceeEE-EeCCeEEEEEcccCCCCceEEEEEE
Q psy12425         10 GDNTKVKIFYAGDQP-MEVSLTKNGR----VVQ-----S--------DDRFKFT-VLDDYIIIFIKEIRKEDAGDYTVNL   70 (591)
Q Consensus        10 G~~~~l~C~~~~~p~-~~v~W~~~~~----~~~-----~--------~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~   70 (591)
                      |++|+|.|....... ..+.|+|...    .+.     .        .+|..+. ......+|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            899999999765433 3699998531    110     0        1121221 1223478999999999999999998


Q ss_pred             E-cCCeeeEEEEEEEE
Q psy12425         71 S-NSSGSVSGTFTINI   85 (591)
Q Consensus        71 ~-n~~g~~~~~~~l~v   85 (591)
                      . ...|.....+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            6 55677777787776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.41  E-value=1.6e-06  Score=63.26  Aligned_cols=70  Identities=21%  Similarity=0.313  Sum_probs=51.2

Q ss_pred             eeeecCCeEEEEEEecc-CCCceEEEEECCE-----Ee--------ecCCceeEEE--eCCeEEEEEcccCCCCceEEEE
Q psy12425          5 LYIPEGDNTKVKIFYAG-DQPMEVSLTKNGR-----VV--------QSDDRFKFTV--LDDYIIIFIKEIRKEDAGDYTV   68 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~-----~~--------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c   68 (591)
                      +.+.+|++|+|.|.+.. .....+.|+|...     .+        ....|+.+..  .....+|.|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            67899999999999875 3566889998642     11        1123444432  2345799999999999999999


Q ss_pred             EEEcCC
Q psy12425         69 NLSNSS   74 (591)
Q Consensus        69 ~~~n~~   74 (591)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            987653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.40  E-value=3e-06  Score=61.60  Aligned_cols=69  Identities=19%  Similarity=0.264  Sum_probs=49.3

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecCCccCC-------------------CCCceEEEEeCCeEEEEEcceecccce
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREIT-------------------PSARHHIFAEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~-------------------~~~~~~~~~~~~~~~l~i~~~~~~d~g  361 (591)
                      +..+.+|+++.|.|.........+.|+|+.....                   ...+..+..+|   +|.|.+++..|+|
T Consensus         7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G   83 (105)
T cd05774           7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTG   83 (105)
T ss_pred             CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCE
Confidence            4457899999999975444445899999532110                   12333444444   7999999999999


Q ss_pred             EEEEEEEeCCc
Q psy12425        362 EYVCRAVNKGG  372 (591)
Q Consensus       362 ~y~c~a~n~~g  372 (591)
                      .|+|.+.+...
T Consensus        84 ~Y~~~v~~~~~   94 (105)
T cd05774          84 FYTLQTITTNF   94 (105)
T ss_pred             EEEEEEEeCCc
Confidence            99999998764

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.39  E-value=1.5e-06  Score=61.78  Aligned_cols=72  Identities=15%  Similarity=0.210  Sum_probs=49.0

Q ss_pred             eeeeecCCeEEEEEEecc-CCCce--EEEEECCEEeecCCceeE--EEeCCeEEEEEcccCCCCce-EEEEEEEcCCee
Q psy12425          4 ALYIPEGDNTKVKIFYAG-DQPME--VSLTKNGRVVQSDDRFKF--TVLDDYIIIFIKEIRKEDAG-DYTVNLSNSSGS   76 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g-~Y~c~~~n~~g~   76 (591)
                      +-.+.+|+.++|+|.+.| .|.+.  |.|||+++.+........  .......+|.+. +.++|.| .|+|.|.+..+.
T Consensus        10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP   87 (100)
T ss_pred             CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence            344789999999999987 77776  799999999865321110  011123567775 4455555 999999877543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.38  E-value=2.2e-06  Score=64.08  Aligned_cols=72  Identities=18%  Similarity=0.319  Sum_probs=52.4

Q ss_pred             ccccceeccccEEEEEEEcCCCCCeeEEecCCc--cC----------------CCCCceEEEEeC-CeEEEEEcceeccc
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--EI----------------TPSARHHIFAEG-DTYTLIINSVYGVD  359 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~----------------~~~~~~~~~~~~-~~~~l~i~~~~~~d  359 (591)
                      +....+.+|++++|.|.+.+ +...+.|++...  ..                ....++...... ..++|.|.+++++|
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D   83 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED   83 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence            34566889999999999988 677899998532  11                012334433332 46789999999999


Q ss_pred             ceEEEEEEEeCC
Q psy12425        360 ADEYVCRAVNKG  371 (591)
Q Consensus       360 ~g~y~c~a~n~~  371 (591)
                      +|.|.|.+.+..
T Consensus        84 sg~Y~Ca~~~~~   95 (110)
T cd05899          84 SAVYLCASSLGG   95 (110)
T ss_pred             CEEEEEEeeCCC
Confidence            999999997643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.38  E-value=2.2e-06  Score=63.49  Aligned_cols=68  Identities=15%  Similarity=0.243  Sum_probs=48.2

Q ss_pred             eeeecCCeEEEEEEeccC-CCceEEEEECCE-----E----e--e-----------cCCceeEEE--eCCeEEEEEcccC
Q psy12425          5 LYIPEGDNTKVKIFYAGD-QPMEVSLTKNGR-----V----V--Q-----------SDDRFKFTV--LDDYIIIFIKEIR   59 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~-p~~~v~W~~~~~-----~----~--~-----------~~~~~~~~~--~~~~~~l~i~~~~   59 (591)
                      +.|.+|++|+|.|.+.+. ....+.|||-..     .    +  .           ...++.+..  ......|+|.+++
T Consensus         1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            468999999999998753 355899998421     1    0  0           013444322  2345789999999


Q ss_pred             CCCceEEEEEEEc
Q psy12425         60 KEDAGDYTVNLSN   72 (591)
Q Consensus        60 ~~d~g~Y~c~~~n   72 (591)
                      ++|+|.|.|...+
T Consensus        81 ~~Dsg~YyCa~~~   93 (107)
T cd07700          81 PEDSGTYFCMTVG   93 (107)
T ss_pred             HHHCEEEEEeEcC
Confidence            9999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.36  E-value=7.8e-06  Score=55.30  Aligned_cols=77  Identities=13%  Similarity=0.173  Sum_probs=54.9

Q ss_pred             eeeeecCCeEEEEEEecc--CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          4 ALYIPEGDNTKVKIFYAG--DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      +-.+..|++++|+|....  .|.+.|.|...+...-.      ....+..+|.+..+...|+|.++|.+.-........+
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~   81 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL   81 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence            446889999999999955  34559999875543211      1112445899999999999999999975544455666


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .|.|.
T Consensus        82 ~V~Vl   86 (88)
T cd07694          82 DIKVL   86 (88)
T ss_pred             eEEEE
Confidence            66664

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.36  E-value=4.4e-06  Score=61.96  Aligned_cols=72  Identities=18%  Similarity=0.311  Sum_probs=51.7

Q ss_pred             ccccceeccccEEEEEEEcCCC-CCeeEEecCC--ccC------------CCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425        299 LRNANAIQNHNAQFQCTITGCP-KPTISWLKGS--REI------------TPSARHHIFAEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      +....+.+|++++|.|.+.+.. ...+.|++..  ...            ....++.....+....|.|.+++++|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y   86 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY   86 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence            3455678999999999997665 5679998742  110            011244444445567899999999999999


Q ss_pred             EEEEEeC
Q psy12425        364 VCRAVNK  370 (591)
Q Consensus       364 ~c~a~n~  370 (591)
                      .|.+.+.
T Consensus        87 ~Ca~~~~   93 (106)
T cd04980          87 YCQQYGT   93 (106)
T ss_pred             EEEEeCC
Confidence            9998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.36  E-value=3.8e-06  Score=58.52  Aligned_cols=63  Identities=8%  Similarity=0.072  Sum_probs=42.4

Q ss_pred             EEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425         13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus        13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      +.|.|.+.+ .|.+.|.|+|+|+.+.... .......+     ...|.+.....++.+.|+|.|.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999977 5889999999999886432 11111111     134555444455567999999987543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.33  E-value=7.2e-06  Score=58.25  Aligned_cols=76  Identities=17%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             CeEEEEEEeccC-CCceEEEEECC----EEee-----------cC--CceeEE-EeCCeEEEEEcccCCCCceEEEEEE-
Q psy12425         11 DNTKVKIFYAGD-QPMEVSLTKNG----RVVQ-----------SD--DRFKFT-VLDDYIIIFIKEIRKEDAGDYTVNL-   70 (591)
Q Consensus        11 ~~~~l~C~~~~~-p~~~v~W~~~~----~~~~-----------~~--~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~-   70 (591)
                      ++++|.|..... ....|.|.|-.    ..+.           ..  +|..+. ......+|.|.+++.+|+|.|+|.+ 
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            478999999743 34589998842    1111           11  233332 1222469999999999999999997 


Q ss_pred             EcCCeeeEEEEEEEEe
Q psy12425         71 SNSSGSVSGTFTINIT   86 (591)
Q Consensus        71 ~n~~g~~~~~~~l~v~   86 (591)
                      ....|..++++.|+|.
T Consensus        81 tfP~G~~~~~~~l~~~   96 (96)
T cd05887          81 TFPLGNTQSSTTVTVL   96 (96)
T ss_pred             eCCCCCeeEEEEEEEC
Confidence            5667888888888873

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.31  E-value=1.9e-06  Score=62.60  Aligned_cols=68  Identities=16%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             ecCCeEEEEEEeccC-C-CceEEEEECCEEeecCCc-eeEEEeCCe-----EEEEEcccCCCCceEEEEEEEcCCe
Q psy12425          8 PEGDNTKVKIFYAGD-Q-PMEVSLTKNGRVVQSDDR-FKFTVLDDY-----IIIFIKEIRKEDAGDYTVNLSNSSG   75 (591)
Q Consensus         8 ~~G~~~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~-----~~l~i~~~~~~d~g~Y~c~~~n~~g   75 (591)
                      ..|+.+.|.|.+.|. | .+.++|++||..+..... .......+.     +.|.|......|.+.|+|.|.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            479999999999995 6 478999999998876543 222222221     3566666666699999999987654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.31  E-value=4.3e-06  Score=58.01  Aligned_cols=62  Identities=11%  Similarity=0.113  Sum_probs=43.2

Q ss_pred             EEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCC
Q psy12425         13 TKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus        13 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      ++|.|.+.| +|+..++|+|||+.+............+     ...|.|..-..++...|+|.+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            689999988 7889999999999986543222211111     2466666555566779999998764

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.31  E-value=4.5e-06  Score=62.06  Aligned_cols=70  Identities=21%  Similarity=0.382  Sum_probs=52.1

Q ss_pred             ceeccccEEEEEEEcCC-CCCeeEEecCCcc--C---------------CCCCceEEEEeC--CeEEEEEcceecccceE
Q psy12425        303 NAIQNHNAQFQCTITGC-PKPTISWLKGSRE--I---------------TPSARHHIFAEG--DTYTLIINSVYGVDADE  362 (591)
Q Consensus       303 ~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~--~---------------~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~  362 (591)
                      .+.+|+.+.|.|.+... +...+.|++....  .               ....++.+..+.  ...+|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999876 6778999884321  0               112344444443  57799999999999999


Q ss_pred             EEEEEEeCCc
Q psy12425        363 YVCRAVNKGG  372 (591)
Q Consensus       363 y~c~a~n~~g  372 (591)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.30  E-value=3.3e-06  Score=62.00  Aligned_cols=67  Identities=16%  Similarity=0.234  Sum_probs=48.1

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCE----E---e---ec------------CCceeEEEeCCeEEEEEcccCCCCc
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGR----V---V---QS------------DDRFKFTVLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~----~---~---~~------------~~~~~~~~~~~~~~l~i~~~~~~d~   63 (591)
                      .+.+|++|+|.|.+.......+.|+|-..    .   |   ..            ..++..........|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            47899999999998655456799998431    1   1   00            1223333445667899999999999


Q ss_pred             eEEEEEEEc
Q psy12425         64 GDYTVNLSN   72 (591)
Q Consensus        64 g~Y~c~~~n   72 (591)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999999764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.26  E-value=8.6e-06  Score=60.43  Aligned_cols=79  Identities=25%  Similarity=0.380  Sum_probs=56.5

Q ss_pred             CCCeEEEEEeeeccC------CCeEEEeeCC-----e-Eee--eccc------e--EEE---ecCCeeEEEEeccCCCcc
Q psy12425        402 KGENVVVKIPFTGYP------KPKITWYRDN-----E-VIE--SGGH------F--HVE---TSERHAILTIRDASNVDT  456 (591)
Q Consensus       402 ~g~~~~l~c~~~~~p------~~~v~W~~~~-----~-~~~--~~~~------~--~~~---~~~~~~~l~i~~~~~~~~  456 (591)
                      .|+.++|.|.....+      ...|.|++..     . .+.  .+..      +  .+.   .......|.|.+++..|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            388999999987653      5689999862     1 110  1111      1  111   123578999999999999


Q ss_pred             eeEEEEEEcCCCccceEEEEEecC
Q psy12425        457 APYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       457 g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999888778888887764

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.26  E-value=9.8e-06  Score=59.74  Aligned_cols=78  Identities=18%  Similarity=0.334  Sum_probs=55.5

Q ss_pred             CCeEEEEEeeeccC------------CCeEEEeeCC--e--E-ee-e------c----cceEEEe---cCCeeEEEEecc
Q psy12425        403 GENVVVKIPFTGYP------------KPKITWYRDN--E--V-IE-S------G----GHFHVET---SERHAILTIRDA  451 (591)
Q Consensus       403 g~~~~l~c~~~~~p------------~~~v~W~~~~--~--~-~~-~------~----~~~~~~~---~~~~~~l~i~~~  451 (591)
                      |++++|.|......            .+.|.|++..  .  . +. .      .    +++.+..   ......|+|.++
T Consensus         2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl   81 (112)
T cd05900           2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL   81 (112)
T ss_pred             CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence            78999999987543            4689999842  1  0 10 0      1    2333322   336789999999


Q ss_pred             CCCcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        452 SNVDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       452 ~~~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      +..|+|.|.|.+.+..........|.|..
T Consensus        82 ~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          82 RSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             ccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            99999999999998877777777777754

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>smart00060 FN3 Fibronectin type 3 domain

Probab=98.26  E-value=8e-06  Score=57.54  Aligned_cols=76  Identities=45%  Similarity=0.644  Sum_probs=52.1

Q ss_pred             CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC---CceEEecee-eeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM---SSWIRVGNT-RFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       484 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~---~~~~~~~~~-~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      +|..+.+......++.|+|++|...+.   .+|.+.+.....   ..|...... ....+.+.+|.+++.|.|+|+|.+.
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~   79 (83)
T smart00060        3 PPSNLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNG   79 (83)
T ss_pred             CCCcEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcc
Confidence            445566766667799999997643321   556666554322   235444222 2578999999999999999999998


Q ss_pred             CcC
Q psy12425        560 YGR  562 (591)
Q Consensus       560 ~G~  562 (591)
                      .|.
T Consensus        80 ~g~   82 (83)
T smart00060       80 AGE   82 (83)
T ss_pred             cCC
Confidence            764

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.25  E-value=8.5e-06  Score=61.69  Aligned_cols=69  Identities=16%  Similarity=0.350  Sum_probs=52.0

Q ss_pred             ccceeccccEEEEEEEcC--CCCCeeEEecCC--ccC-----------------CCCCceEEEEeC--CeEEEEEcceec
Q psy12425        301 NANAIQNHNAQFQCTITG--CPKPTISWLKGS--REI-----------------TPSARHHIFAEG--DTYTLIINSVYG  357 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~--~p~~~v~W~~~~--~~~-----------------~~~~~~~~~~~~--~~~~l~i~~~~~  357 (591)
                      .+.+.+|+.++|.|.+.+  .+.+.+.|++..  ...                 ....++.+..+.  ...+|.|.+++.
T Consensus         7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~   86 (116)
T cd04982           7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK   86 (116)
T ss_pred             eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence            455788999999999977  677889999842  111                 012455555555  578999999999


Q ss_pred             ccceEEEEEEEe
Q psy12425        358 VDADEYVCRAVN  369 (591)
Q Consensus       358 ~d~g~y~c~a~n  369 (591)
                      +|+|.|.|.+..
T Consensus        87 ~Dsg~Y~C~~~~   98 (116)
T cd04982          87 EDSATYYCAYWE   98 (116)
T ss_pred             HHCEEEEEEEec
Confidence            999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA03376 BARF1; Provisional

Probab=98.25  E-value=1.2e-05  Score=62.54  Aligned_cols=72  Identities=15%  Similarity=0.213  Sum_probs=53.0

Q ss_pred             eeeeecCCeEEEEEEecc---CCCceEEEEECCE----E-------------eecCCceeEEEeCCeEEEEEcccCCCCc
Q psy12425          4 ALYIPEGDNTKVKIFYAG---DQPMEVSLTKNGR----V-------------VQSDDRFKFTVLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~---~p~~~v~W~~~~~----~-------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~   63 (591)
                      ++.+..|+.+.|+|...-   .+...|.|+|.+.    .             .....++.+....++.+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            578899999999999852   4566899999421    1             1111333344456788999999999999


Q ss_pred             eEEEEEEEcCCe
Q psy12425         64 GDYTVNLSNSSG   75 (591)
Q Consensus        64 g~Y~c~~~n~~g   75 (591)
                      |.|+|.......
T Consensus       100 GtY~C~fQkge~  111 (221)
T PHA03376        100 GNYLCRMKLGET  111 (221)
T ss_pred             ceEEEEEEcCCC
Confidence            999999976543

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.21  E-value=1.6e-05  Score=58.98  Aligned_cols=78  Identities=18%  Similarity=0.263  Sum_probs=53.7

Q ss_pred             ccccEEEEEEEcCCC------CCeeEEecCCcc--------CCC----------CCceEEEEe-CCeEEEEEcceecccc
Q psy12425        306 QNHNAQFQCTITGCP------KPTISWLKGSRE--------ITP----------SARHHIFAE-GDTYTLIINSVYGVDA  360 (591)
Q Consensus       306 ~g~~~~l~c~~~~~p------~~~v~W~~~~~~--------~~~----------~~~~~~~~~-~~~~~l~i~~~~~~d~  360 (591)
                      .|++++|.|.....|      ...|.|++....        +..          ..+..+... ....+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            378999999986653      457999985311        000          112222211 2345899999999999


Q ss_pred             eEEEEEEEeCCcceeeeeEEEEe
Q psy12425        361 DEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       361 g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      |.|.|.+.+..+.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999988777777777764

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.20  E-value=2.3e-05  Score=53.37  Aligned_cols=62  Identities=23%  Similarity=0.350  Sum_probs=43.6

Q ss_pred             EEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEE-eC--CeEEEEEcceecccceEEEEEEEeCC
Q psy12425        310 AQFQCTITG-CPKPTISWLKGSREITPSARHHIFA-EG--DTYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       310 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~-~~--~~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      +.|.|.+.| .|.+.|.|++++.++.......... .+  ...+|.|..-..+|...|+|+|.|..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence            689999966 7889999999998886542211111 11  13367776666667778999999865

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.20  E-value=1.9e-05  Score=57.85  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=30.0

Q ss_pred             CeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       346 ~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      +..+|.|.+++..|+|.|+|.+.+..+.....+.|.|
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            4568999999999999999999987766555555554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.19  E-value=1.7e-05  Score=57.81  Aligned_cols=67  Identities=16%  Similarity=0.286  Sum_probs=50.0

Q ss_pred             ceeccccEEEEEEEcCC--CCCeeEEecCCc--cC------------CCCCceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425        303 NAIQNHNAQFQCTITGC--PKPTISWLKGSR--EI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       303 ~~~~g~~~~l~c~~~~~--p~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      .+.+|++++|.|...+.  ....+.|++...  ..            ....++....++...+|.|.+++++|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998765  556799987322  11            112355555666778899999999999999999


Q ss_pred             EEe
Q psy12425        367 AVN  369 (591)
Q Consensus       367 a~n  369 (591)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            865

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.12  E-value=3.3e-05  Score=56.45  Aligned_cols=75  Identities=17%  Similarity=0.346  Sum_probs=49.1

Q ss_pred             ccEEEEEEEcCCC---CCeeEEecCCcc---------------CCCCCceEEEEeC---CeEEEEEcceecccceEEEEE
Q psy12425        308 HNAQFQCTITGCP---KPTISWLKGSRE---------------ITPSARHHIFAEG---DTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       308 ~~~~l~c~~~~~p---~~~v~W~~~~~~---------------~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      +++.|.|.....+   ...|.|++....               +....+..+...+   ...+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999987654   447999985431               0111111121111   356899999999999999999


Q ss_pred             EEe-CCcceeeeeEEEE
Q psy12425        367 AVN-KGGVKSTKAELII  382 (591)
Q Consensus       367 a~n-~~g~~~~~~~l~v  382 (591)
                      +.. ..|.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 5666666666655

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.11  E-value=1.9e-05  Score=59.43  Aligned_cols=71  Identities=14%  Similarity=0.217  Sum_probs=50.6

Q ss_pred             CceeeeecCCeEEEEEEeccCC--CceEEEEECC--E-E--e---e-----------cCCceeEEEeC--CeEEEEEccc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKNG--R-V--V---Q-----------SDDRFKFTVLD--DYIIIFIKEI   58 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~~--~-~--~---~-----------~~~~~~~~~~~--~~~~l~i~~~   58 (591)
                      |..+.+.+|++|+|.|...+..  ...+.|||-.  + +  |   .           ..+|+......  ....|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            6788999999999999986532  4569999832  1 1  1   0           01344444332  3468999999


Q ss_pred             CCCCceEEEEEEEc
Q psy12425         59 RKEDAGDYTVNLSN   72 (591)
Q Consensus        59 ~~~d~g~Y~c~~~n   72 (591)
                      +++|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.09  E-value=2.2e-05  Score=56.55  Aligned_cols=65  Identities=20%  Similarity=0.377  Sum_probs=46.4

Q ss_pred             cccEEEEEEEcCCCCCeeEEecCCccCCC------------------CCceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        307 NHNAQFQCTITGCPKPTISWLKGSREITP------------------SARHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       307 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~------------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      |++|+|.|.........+.|++.......                  ..+..+..+   .+|.|.+++.+|+|.|+|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence            68899999987766778999986533211                  011222222   589999999999999999998


Q ss_pred             eCCcce
Q psy12425        369 NKGGVK  374 (591)
Q Consensus       369 n~~g~~  374 (591)
                      ...|..
T Consensus        78 ~~~~~~   83 (92)
T cd05741          78 STNGVT   83 (92)
T ss_pred             cCCCcE
Confidence            876443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.09  E-value=2.5e-05  Score=55.64  Aligned_cols=77  Identities=13%  Similarity=0.183  Sum_probs=50.5

Q ss_pred             eccccceeccccEEEEEEEcC-CCCCe--eEEecCCccCCCCCceEE--EEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425        298 PLRNANAIQNHNAQFQCTITG-CPKPT--ISWLKGSREITPSARHHI--FAEGDTYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~-~p~~~--v~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      .+.+..+.+|+.++|+|.+.| .|.+.  |.|++++..+........  .......+|.+..-..+|...|+|+|.+..+
T Consensus         7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~   86 (100)
T cd05755           7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLR   86 (100)
T ss_pred             ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence            334455789999999999977 67776  799999988854321110  0111234667665544555589999998765


Q ss_pred             ce
Q psy12425        373 VK  374 (591)
Q Consensus       373 ~~  374 (591)
                      ..
T Consensus        87 ~~   88 (100)
T cd05755          87 PE   88 (100)
T ss_pred             cc
Confidence            44

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.03  E-value=3.8e-05  Score=55.53  Aligned_cols=77  Identities=18%  Similarity=0.277  Sum_probs=53.1

Q ss_pred             CCCeEEEEEeeec-cCCCeEEEeeCCeEeee-------------ccce--EEEecCCeeEEEEeccCCCcceeEEEEEEc
Q psy12425        402 KGENVVVKIPFTG-YPKPKITWYRDNEVIES-------------GGHF--HVETSERHAILTIRDASNVDTAPYRVVAEN  465 (591)
Q Consensus       402 ~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~-------------~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n  465 (591)
                      .|++|+|.|.... .....+.|++....+..             ...+  ++.......+|+|.+++.+|+|.|.|.+.+
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            5899999998754 55568999986432211             1111  223334568899999999999999999998


Q ss_pred             CCCcc-ceEEEEEe
Q psy12425        466 DLGMD-SAIVKIQI  478 (591)
Q Consensus       466 ~~g~~-~~~~~~~v  478 (591)
                      ..|.. ...+.|.|
T Consensus        83 ~~~~~~~~~f~L~v   96 (97)
T cd05775          83 KNGVTITKEFTLHI   96 (97)
T ss_pred             CCCCeEEEEEEEEe
Confidence            87665 44444443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.03  E-value=7.7e-05  Score=53.10  Aligned_cols=73  Identities=21%  Similarity=0.327  Sum_probs=47.9

Q ss_pred             CeEEEEEEecc-CCCceEEEEECCE----Ee-----------ecC--CceeEEE-eCCeEEEEEcccCCCCceEEEEEEE
Q psy12425         11 DNTKVKIFYAG-DQPMEVSLTKNGR----VV-----------QSD--DRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus        11 ~~~~l~C~~~~-~p~~~v~W~~~~~----~~-----------~~~--~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      ++++|.|.... ....+|.|.|-..    .+           ...  +|..+.. .....+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            47899999864 3456889988421    11           111  2333321 1234689999999999999999985


Q ss_pred             c-CCeeeEEEEEE
Q psy12425         72 N-SSGSVSGTFTI   83 (591)
Q Consensus        72 n-~~g~~~~~~~l   83 (591)
                      . ..|..+..+.|
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            4 46666666554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.03  E-value=3.2e-05  Score=55.47  Aligned_cols=68  Identities=15%  Similarity=0.092  Sum_probs=46.8

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ...+..|++|+|.|.... ....+.|+|++..............+....+.|.+++.+|+|.|.|....
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            345789999999998765 55689999987653211000000112233789999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.00  E-value=6.2e-05  Score=55.83  Aligned_cols=78  Identities=21%  Similarity=0.390  Sum_probs=55.2

Q ss_pred             CCeEEEEEeeeccC----------CCeEEEeeCC--eEee----------ec----cceEEE---ecCCeeEEEEeccCC
Q psy12425        403 GENVVVKIPFTGYP----------KPKITWYRDN--EVIE----------SG----GHFHVE---TSERHAILTIRDASN  453 (591)
Q Consensus       403 g~~~~l~c~~~~~p----------~~~v~W~~~~--~~~~----------~~----~~~~~~---~~~~~~~l~i~~~~~  453 (591)
                      |++++|.|.....+          ...|.|++..  ....          ..    +++.+.   .......|+|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            78899999987644          3579999842  1110          01    122221   123568899999999


Q ss_pred             CcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        454 VDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       454 ~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      .|.|.|.|.+..........+.|.|.+
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            999999999998877778888887764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd00096 Ig Immunoglobulin domain

Probab=98.00  E-value=3.8e-05  Score=52.36  Aligned_cols=62  Identities=24%  Similarity=0.299  Sum_probs=46.9

Q ss_pred             EEEEEEeccCCCceEEEEECCEEeecCCce----eEEEeCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425         13 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRF----KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus        13 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      +.|.|.+.+.+...+.|++++.........    ..........|.|.+++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            478999988788899999998766443211    11122344689999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.00  E-value=7.7e-05  Score=55.53  Aligned_cols=74  Identities=14%  Similarity=0.181  Sum_probs=50.2

Q ss_pred             eeecCCCeEEEEEeeecc----CCCeEEEee---------------CCeEee-ec----cceEEEe--cCCeeEEEEecc
Q psy12425        398 AYFDKGENVVVKIPFTGY----PKPKITWYR---------------DNEVIE-SG----GHFHVET--SERHAILTIRDA  451 (591)
Q Consensus       398 ~~~~~g~~~~l~c~~~~~----p~~~v~W~~---------------~~~~~~-~~----~~~~~~~--~~~~~~l~i~~~  451 (591)
                      ..+..|+.+.|.|.....    +...|.|.+               +|.... ..    ++..+..  .....+|.|.++
T Consensus         8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv   87 (116)
T cd05879           8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL   87 (116)
T ss_pred             EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence            456789999999998663    345899933               222221 11    1222211  235678999999


Q ss_pred             CCCcceeEEEEEEcCCCccc
Q psy12425        452 SNVDTAPYRVVAENDLGMDS  471 (591)
Q Consensus       452 ~~~~~g~y~c~a~n~~g~~~  471 (591)
                      +..|.|.|+|.+.|..+...
T Consensus        88 ~~sD~G~Y~C~v~n~p~~~~  107 (116)
T cd05879          88 DYTDNGTFTCDVKNPPDIVG  107 (116)
T ss_pred             CcccCEEEEEEEEcCCCcCC
Confidence            99999999999999876543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>KOG4802|consensus

Probab=97.98  E-value=0.00035  Score=61.55  Aligned_cols=142  Identities=21%  Similarity=0.288  Sum_probs=97.3

Q ss_pred             CCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeec--CC-eEEE
Q psy12425        132 SMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVG--GD-FVNL  208 (591)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~-~v~l  208 (591)
                      ....|+.+........+....+.|+..|.|++.|.|..|.-..+..+..........+|.+|.++.+..+.  |. ...|
T Consensus       195 ~~thwQtv~~t~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v  274 (516)
T KOG4802|consen  195 GPTHWQTVEKTMEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKV  274 (516)
T ss_pred             ccccceeeeecCCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEE
Confidence            44568888777677788999999999999999999999886666666666666666677777776554432  22 3556


Q ss_pred             EEecCCCCCCcceEEEEEEeeecCCC---ccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCC
Q psy12425        209 SWDKPLDDGGSRIQGYWIDKHEVGSD---AWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLP  275 (591)
Q Consensus       209 ~w~~~~~~~~~~~~~y~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~  275 (591)
                      .|.++..+  -++..|.|.+......   ....-.........+.|..|.++..|.+.+.|....|....
T Consensus       275 ~w~P~~sd--lPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL  342 (516)
T KOG4802|consen  275 VWCPSKSD--LPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL  342 (516)
T ss_pred             EeCCCCCC--CcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence            67765333  4788999987654310   11111111123345569999999999999999887776654

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.95  E-value=0.00017  Score=54.65  Aligned_cols=72  Identities=17%  Similarity=0.413  Sum_probs=52.1

Q ss_pred             ccccceeccccEEEEEEEc-CCCCCeeEEecCCc-----cCC--------------CCCceEEEEeC--CeEEEEEccee
Q psy12425        299 LRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSR-----EIT--------------PSARHHIFAEG--DTYTLIINSVY  356 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~-----~~~--------------~~~~~~~~~~~--~~~~l~i~~~~  356 (591)
                      +..+.+..|+++.|.|... ......+.|++...     .+.              ...+..+..+.  ...+|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            4556788999999999998 55667899988322     000              01223333332  36789999999


Q ss_pred             cccceEEEEEEEeC
Q psy12425        357 GVDADEYVCRAVNK  370 (591)
Q Consensus       357 ~~d~g~y~c~a~n~  370 (591)
                      .+|+|.|.|.+...
T Consensus        88 ~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   88 PSDSGTYFCQVSTS  101 (114)
T ss_dssp             GGGEEEEEEEEEES
T ss_pred             cCcCEEEEEEEEEC
Confidence            99999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.95  E-value=9.7e-05  Score=55.37  Aligned_cols=74  Identities=20%  Similarity=0.273  Sum_probs=49.3

Q ss_pred             cceeecCCCeEEEEEeeeccC----CCeEEEeeC----CeE--ee---------eccce----EEE--ecCCeeEEEEec
Q psy12425        396 DTAYFDKGENVVVKIPFTGYP----KPKITWYRD----NEV--IE---------SGGHF----HVE--TSERHAILTIRD  450 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~~p----~~~v~W~~~----~~~--~~---------~~~~~----~~~--~~~~~~~l~i~~  450 (591)
                      ..+.+..|+.+.|.|.....+    ...|.|++.    +..  +.         ...++    .+.  .......|.|.+
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~   85 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ   85 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence            345678899999999986543    236999741    111  10         01111    111  123467899999


Q ss_pred             cCCCcceeEEEEEEcCCCc
Q psy12425        451 ASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       451 ~~~~~~g~y~c~a~n~~g~  469 (591)
                      ++.+|+|.|.|.+.|..+.
T Consensus        86 v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          86 LQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             CChhhCEEEEEEEEeCCCC
Confidence            9999999999999988664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.93  E-value=8.2e-05  Score=51.80  Aligned_cols=65  Identities=25%  Similarity=0.441  Sum_probs=42.2

Q ss_pred             EEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEEeCCeE----EEEEcceecccceEEEEEEEeCCcce
Q psy12425        310 AQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEGDTY----TLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       310 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      +.|.|.+.+ +|.+.|.|++++..+..........+++.+    .|.+.....++...|+|+|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            689999966 588999999999887643311111222221    34444444556679999999876543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.92  E-value=0.00012  Score=53.85  Aligned_cols=68  Identities=15%  Similarity=0.188  Sum_probs=44.0

Q ss_pred             eeecCCeEEEEEEecc-CCC-ceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCce-EEEEEEEcCC
Q psy12425          6 YIPEGDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAG-DYTVNLSNSS   74 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g-~Y~c~~~n~~   74 (591)
                      ++..|+.++|.|.+.| .|. ..++|+|||+.+...........++     .+.|.+. +...|.| .|+|.+....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCC
Confidence            3567889999999998 564 6999999999986532211111221     2345554 3444544 4999997654

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.91  E-value=0.00016  Score=50.28  Aligned_cols=64  Identities=14%  Similarity=0.226  Sum_probs=44.5

Q ss_pred             EEEEEeeecc-CCCeEEEeeCCeEeeeccceEEEecCC------eeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        406 VVVKIPFTGY-PKPKITWYRDNEVIESGGHFHVETSER------HAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       406 ~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      +.|.|.+.+. |.+.|+|+++|..+..... .+...+.      .+.|.+.....++...|+|.|.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            5799999764 8899999999988765332 2322222      2344454555677789999999886544

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.90  E-value=9.2e-05  Score=50.49  Aligned_cols=62  Identities=18%  Similarity=0.229  Sum_probs=40.8

Q ss_pred             eEEEEEEecc-CCC-ceEEEEECCEEeecCCc-eeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcC
Q psy12425         12 NTKVKIFYAG-DQP-MEVSLTKNGRVVQSDDR-FKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus        12 ~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~-~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      .++|.|.+.| .|+ ..+.|+|||+.+..+.. ......++     .+.|.|.....++...|+|.+...
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            3789999999 455 69999999997543311 11111122     145666666667778999999654

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.89  E-value=6e-05  Score=54.71  Aligned_cols=69  Identities=19%  Similarity=0.267  Sum_probs=48.3

Q ss_pred             cCCCeEEEEEeeecc-C-CCeEEEeeCCeEeeeccc-eEEEecCC-----eeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        401 DKGENVVVKIPFTGY-P-KPKITWYRDNEVIESGGH-FHVETSER-----HAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       401 ~~g~~~~l~c~~~~~-p-~~~v~W~~~~~~~~~~~~-~~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      ..|..+.|.|.+.|. | .+.++|+++|..+..... .......+     .+.|.+......+.+.|+|.|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            358899999999997 5 368999999998865443 22221111     234555555556999999999987553

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.88  E-value=0.014  Score=52.09  Aligned_cols=234  Identities=13%  Similarity=0.118  Sum_probs=120.6

Q ss_pred             CCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CC--
Q psy12425        245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PK--  321 (591)
Q Consensus       245 ~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~--  321 (591)
                      ....+.|.++...++|.|++...+...... .+....+.+.    ..+|.+...+  ..+.+|+...-.|.+..+ |.  
T Consensus       205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i-~e~~~~~~v~----~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~S  277 (490)
T PHA03271        205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPL-LDKHIYIRVC----QRPASVDVLA--PPVLSGENYKASCIVRHFYPPGS  277 (490)
T ss_pred             ceeeEEEEEeecccceEEEEEecCCCCCcc-ccceEEEEEE----ecCCCccccC--CccccCCCceEEEEeeeecCCCc
Confidence            446788999999999988777665433322 1222223222    3556555433  336899999999999774 33  


Q ss_pred             CeeEEecCCccCCCCCceEEE---EeCC-----eEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCC
Q psy12425        322 PTISWLKGSREITPSARHHIF---AEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR  393 (591)
Q Consensus       322 ~~v~W~~~~~~~~~~~~~~~~---~~~~-----~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~  393 (591)
                      ..+.|+.||..+.........   .++.     ..++.+.+......-..+|.+.-..+......  .-...|.+-.+|.
T Consensus       278 vrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaatP~VY~~P~  355 (490)
T PHA03271        278 VYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATAIPTVYHHPR  355 (490)
T ss_pred             eEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecccCCccccCCe
Confidence            368999998877543321111   1111     12333333322233479999875544332221  3333344433333


Q ss_pred             cccceeecCCCeEEEEEeeeccC-CCeEEEeeCCeEeeeccc---eEEEecCCeeEEEEec-cCCCc---ceeEEEEEEc
Q psy12425        394 FRDTAYFDKGENVVVKIPFTGYP-KPKITWYRDNEVIESGGH---FHVETSERHAILTIRD-ASNVD---TAPYRVVAEN  465 (591)
Q Consensus       394 ~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~l~i~~-~~~~~---~g~y~c~a~n  465 (591)
                      +  ...+..|.-   .|.+.-.| ...+.|+.++........   ..-.-.+......|.+ +...|   --.|+|++..
T Consensus       356 I--Sv~FedG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~G  430 (490)
T PHA03271        356 I--SLAFKDGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIG  430 (490)
T ss_pred             E--EEEEeCCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEee
Confidence            2  223344433   35554443 448999987765432100   0001112233344444 22222   3589999874


Q ss_pred             -CCCccceEEEEEecCCCCCCCCCeeee
Q psy12425        466 -DLGMDSAIVKIQISDRPDPPQFPTVED  492 (591)
Q Consensus       466 -~~g~~~~~~~~~v~~~p~~p~~~~~~~  492 (591)
                       ..+.......-.....|..+....+..
T Consensus       431 YP~~lP~Fe~t~tYDASP~a~~~PmVis  458 (490)
T PHA03271        431 YPFDEDKFQASEYYDATPSARGSPMVLT  458 (490)
T ss_pred             cCCCCCccceeeeecCCCccCCCcEEEE
Confidence             233334444444445566666555443

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.86  E-value=0.00018  Score=54.29  Aligned_cols=73  Identities=16%  Similarity=0.376  Sum_probs=47.4

Q ss_pred             cccceeccccEEEEEEEcCCC----CCeeEEecCCc--c----C---------C-CCCc----eEEEE--eCCeEEEEEc
Q psy12425        300 RNANAIQNHNAQFQCTITGCP----KPTISWLKGSR--E----I---------T-PSAR----HHIFA--EGDTYTLIIN  353 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p----~~~v~W~~~~~--~----~---------~-~~~~----~~~~~--~~~~~~l~i~  353 (591)
                      ..+.+..|+.++|.|......    ...+.|++...  .    +         . ...+    ..+..  ..+..+|+|.
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH   85 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence            445678999999999985432    25699976321  0    0         0 0111    11211  1224689999


Q ss_pred             ceecccceEEEEEEEeCCc
Q psy12425        354 SVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       354 ~~~~~d~g~y~c~a~n~~g  372 (591)
                      +++.+|+|.|.|.+.|...
T Consensus        86 ~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          86 NLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eCCcccCEEEEEEEEeCCC
Confidence            9999999999999988644

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>KOG4367|consensus

Probab=97.84  E-value=1.7e-05  Score=69.77  Aligned_cols=81  Identities=27%  Similarity=0.260  Sum_probs=70.3

Q ss_pred             ecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceE
Q psy12425        493 IGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLI  572 (591)
Q Consensus       493 ~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~  572 (591)
                      ...++++|.|..|..+ +.+..+|.++.....++.++.+..+..+..++.+|.-++.|.-||.|.|..|.++.|..... 
T Consensus       450 t~nns~t~~wkqp~~~-~~~~dg~~leld~g~~g~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~l-  527 (699)
T KOG4367|consen  450 THNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL-  527 (699)
T ss_pred             ccCCceEEEeecCCCC-CCCCcceEEEeecCCCCceeEEEecCceeEEecceecchhHHHHHHHhhccCCCcccceeEe-
Confidence            4578999999976644 56899999999998899999998888899999999999999999999999999999986543 


Q ss_pred             Eec
Q psy12425        573 TTY  575 (591)
Q Consensus       573 ~t~  575 (591)
                      .|.
T Consensus       528 qts  530 (699)
T KOG4367|consen  528 QTS  530 (699)
T ss_pred             eec
Confidence            444

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.83  E-value=0.00013  Score=55.10  Aligned_cols=71  Identities=15%  Similarity=0.274  Sum_probs=50.6

Q ss_pred             ccccceeccccEEEEEEEcCC-CCCeeEEecCC--ccC------------CCCCceEEEE--eCCeEEEEEcceecccce
Q psy12425        299 LRNANAIQNHNAQFQCTITGC-PKPTISWLKGS--REI------------TPSARHHIFA--EGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~--~~~------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g  361 (591)
                      +..+.+..|+++.|.|..... ....+.|++..  ...            ....++.+..  .....+|.|.+++.+|+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg   85 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA   85 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence            345668899999999998653 45679998732  110            1123454442  345678999999999999


Q ss_pred             EEEEEEEe
Q psy12425        362 EYVCRAVN  369 (591)
Q Consensus       362 ~y~c~a~n  369 (591)
                      .|.|.+..
T Consensus        86 ~Y~C~~~~   93 (116)
T cd07706          86 KYFCALST   93 (116)
T ss_pred             EEEEEEEC
Confidence            99999875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.82  E-value=0.00045  Score=46.99  Aligned_cols=74  Identities=12%  Similarity=0.162  Sum_probs=50.7

Q ss_pred             ceeccccEEEEEEEcCCCC--CeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEE
Q psy12425        303 NAIQNHNAQFQCTITGCPK--PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL  380 (591)
Q Consensus       303 ~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l  380 (591)
                      .+..|++++|+|.....+.  +.|.|...+.....      ....+..+|.+..+...|+|.++|.+.-..-.......+
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V   83 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI   83 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence            4788999999999966444  49999875544221      111234589999999999999999997543333344444


Q ss_pred             EE
Q psy12425        381 II  382 (591)
Q Consensus       381 ~v  382 (591)
                      .|
T Consensus        84 ~V   85 (88)
T cd07694          84 KV   85 (88)
T ss_pred             EE
Confidence            43

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.81  E-value=9.5e-05  Score=51.75  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=40.7

Q ss_pred             eEEEEEEeccCCC--ceEEEEECCE-----Ee----------e---cCCceeEEEe--CCeEEEEEcccCCCCceEEEEE
Q psy12425         12 NTKVKIFYAGDQP--MEVSLTKNGR-----VV----------Q---SDDRFKFTVL--DDYIIIFIKEIRKEDAGDYTVN   69 (591)
Q Consensus        12 ~~~l~C~~~~~p~--~~v~W~~~~~-----~~----------~---~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~   69 (591)
                      ++.|.|.+.....  ..+.|++...     .+          .   ...|+.+...  .+..+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4789999976444  3899988531     11          0   1234444433  4568899999999999999996


Q ss_pred             E
Q psy12425         70 L   70 (591)
Q Consensus        70 ~   70 (591)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.78  E-value=0.00067  Score=49.94  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=32.0

Q ss_pred             eEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       347 ~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      ..+|.|.+++..|+|.|+|.+.+........+.|.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            4589999999999999999999988777777777764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.78  E-value=0.00022  Score=52.83  Aligned_cols=67  Identities=24%  Similarity=0.458  Sum_probs=46.2

Q ss_pred             ceeccccEEEEEEEcCC-CCCeeEEecCCcc---C--------C-----------CCCceEEE--EeCCeEEEEEcceec
Q psy12425        303 NAIQNHNAQFQCTITGC-PKPTISWLKGSRE---I--------T-----------PSARHHIF--AEGDTYTLIINSVYG  357 (591)
Q Consensus       303 ~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~---~--------~-----------~~~~~~~~--~~~~~~~l~i~~~~~  357 (591)
                      .+..|+.++|.|.+.+. ....+.|++....   .        .           ...++.+.  ..+....|+|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            36789999999998763 3457999984321   0        0           01233332  233456899999999


Q ss_pred             ccceEEEEEEEe
Q psy12425        358 VDADEYVCRAVN  369 (591)
Q Consensus       358 ~d~g~y~c~a~n  369 (591)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.76  E-value=0.00017  Score=50.03  Aligned_cols=64  Identities=23%  Similarity=0.321  Sum_probs=42.7

Q ss_pred             EEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEE-eCCe----EEEEEcceecccceEEEEEEEeCCcc
Q psy12425        310 AQFQCTITG-CPKPTISWLKGSREITPSARHHIFA-EGDT----YTLIINSVYGVDADEYVCRAVNKGGV  373 (591)
Q Consensus       310 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~----~~l~i~~~~~~d~g~y~c~a~n~~g~  373 (591)
                      ++|.|.+.| +|.+.|.|++++..+.......... .++.    .+|.+..-..++...|+|++.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999977 7888999999999876543222222 2222    24555544456677899999886543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.75  E-value=0.00033  Score=51.50  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=31.1

Q ss_pred             CeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       346 ~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      +..+|.|.+++.+|+|.|.|.+..........+.|.|.
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            35689999999999999999999866566666777664

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.74  E-value=0.00041  Score=50.51  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=48.8

Q ss_pred             eEEEEEeeeccC---CCeEEEeeCCe-----Eee---e----------ccceEEEe--cCCeeEEEEeccCCCcceeEEE
Q psy12425        405 NVVVKIPFTGYP---KPKITWYRDNE-----VIE---S----------GGHFHVET--SERHAILTIRDASNVDTAPYRV  461 (591)
Q Consensus       405 ~~~l~c~~~~~p---~~~v~W~~~~~-----~~~---~----------~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c  461 (591)
                      +++|.|.....+   ...|.|++...     .+.   .          .++..+..  ......|+|.+++..|.|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            578899886544   34789988321     110   0          02223332  2346789999999999999999


Q ss_pred             EEEc-CCCccceEEEEEe
Q psy12425        462 VAEN-DLGMDSAIVKIQI  478 (591)
Q Consensus       462 ~a~n-~~g~~~~~~~~~v  478 (591)
                      .+.+ ..|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9998 6676666666655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.73  E-value=0.00022  Score=52.43  Aligned_cols=66  Identities=15%  Similarity=0.306  Sum_probs=46.9

Q ss_pred             eeccccEEEEEEEcCCCCCeeEEecCCcc----C------CC------------CCceEEEEeCCeEEEEEcceecccce
Q psy12425        304 AIQNHNAQFQCTITGCPKPTISWLKGSRE----I------TP------------SARHHIFAEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~----~------~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g  361 (591)
                      +..|+.++|.|.........+.|++....    .      ..            ..++..........|.|.+++.+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            57899999999986655567999884321    1      00            11233334456778999999999999


Q ss_pred             EEEEEEEe
Q psy12425        362 EYVCRAVN  369 (591)
Q Consensus       362 ~y~c~a~n  369 (591)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.71  E-value=0.00036  Score=50.83  Aligned_cols=68  Identities=15%  Similarity=0.193  Sum_probs=48.3

Q ss_pred             ceeccccEEEEEEEcC-CCCCeeEEecCCccC-------------CCCCceEEEE--eCCeEEEEEcceecccceEEEEE
Q psy12425        303 NAIQNHNAQFQCTITG-CPKPTISWLKGSREI-------------TPSARHHIFA--EGDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       303 ~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~-------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      .+.+|++++|.|.... .....+.|++.....             ....++.+..  .....+|.|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            4678999999999865 456678998853211             1123344432  24567899999999999999999


Q ss_pred             EEeC
Q psy12425        367 AVNK  370 (591)
Q Consensus       367 a~n~  370 (591)
                      +...
T Consensus        83 ~~~~   86 (98)
T cd05716          83 VGDD   86 (98)
T ss_pred             cccC
Confidence            8764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.71  E-value=0.00021  Score=50.92  Aligned_cols=67  Identities=15%  Similarity=0.210  Sum_probs=43.1

Q ss_pred             CCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425         10 GDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus        10 G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      |+.+.|.|.+.+ +|++.++|+.++..+............+     .+.|.+..-..++...++|.|.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            679999998755 8999999999998772111111111111     245666654455677899999887543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.70  E-value=9.1e-05  Score=46.92  Aligned_cols=52  Identities=23%  Similarity=0.318  Sum_probs=36.7

Q ss_pred             ecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          8 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         8 ~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      -.|.+|+|+|...+.   .+.|++|+..+..+..          .+.+.+-. ++.|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence            469999999987633   2999999966544321          33344444 8899999999644

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.69  E-value=0.00063  Score=48.98  Aligned_cols=37  Identities=8%  Similarity=0.150  Sum_probs=32.0

Q ss_pred             CeeEEEEeccCCCcceeEEEEEEc-CCCccceEEEEEe
Q psy12425        442 RHAILTIRDASNVDTAPYRVVAEN-DLGMDSAIVKIQI  478 (591)
Q Consensus       442 ~~~~l~i~~~~~~~~g~y~c~a~n-~~g~~~~~~~~~v  478 (591)
                      ...+|.|.+++..|.|.|.|.+.| ..|..+..+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            358899999999999999999999 6787777777765

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.69  E-value=0.00032  Score=50.11  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=40.4

Q ss_pred             ecCCeEEEEEEecc-CCC-ceEEEEECCEEeecC-CceeEEEeCC-e-EEEEEcccCCCCceEEEEEEEcC
Q psy12425          8 PEGDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSD-DRFKFTVLDD-Y-IIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         8 ~~G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~-~~~~~~~~~~-~-~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      ..|+.++|.|.+.| .|. ..+.|+|||+.+... ........++ . .......+.+++...|.|.+.-.
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~   82 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHS   82 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            46899999999999 554 489999999987654 1111212222 1 11111233345566899998654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.66  E-value=0.0001  Score=53.50  Aligned_cols=68  Identities=10%  Similarity=0.077  Sum_probs=43.4

Q ss_pred             eeecCCeEEEEEEecc-CC-CceEEEEECCEEeecCCc-eeEEEe-CCe----EEEEEcccCCCCceEEEEEEEcC
Q psy12425          6 YIPEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDR-FKFTVL-DDY----IIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~-~~~----~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      ...+++.++|.|.+.| +| ...|.|+|||+.+..+.. ...... ++.    +.|.+..-.-.+...|+|.+...
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~   88 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE   88 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence            4457889999999998 55 678999999998854311 111111 221    34445444434466899998754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.66  E-value=0.0005  Score=54.30  Aligned_cols=85  Identities=16%  Similarity=0.250  Sum_probs=61.2

Q ss_pred             ceeecCCCeEEEEEeee-ccCCCeEEEeeCCeEeee------------ccceE-EEecCCeeEEEEeccCCCcceeEEEE
Q psy12425        397 TAYFDKGENVVVKIPFT-GYPKPKITWYRDNEVIES------------GGHFH-VETSERHAILTIRDASNVDTAPYRVV  462 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~------------~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~c~  462 (591)
                      ...+.+|+++.|.|... +...+.+.|.+....+..            .+++. +......+.|+|.+++.+|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            34568899999999984 667889999986443310            12333 23334578899999999999999999


Q ss_pred             EEc-CCC-ccceEEEEEecCC
Q psy12425        463 AEN-DLG-MDSAIVKIQISDR  481 (591)
Q Consensus       463 a~n-~~g-~~~~~~~~~v~~~  481 (591)
                      ... ..| ..+...-|.|++.
T Consensus       104 F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEecCCCCCceeEEEEEEEch
Confidence            864 345 5677777877653

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.64  E-value=0.0003  Score=50.11  Aligned_cols=69  Identities=10%  Similarity=0.102  Sum_probs=42.4

Q ss_pred             eecCCeEEEEEEecc-CCC-ceEEEEECCEEeecCCc-ee-EEEeCCe----EEEEEcccCCCCceEEEEEEEcCCe
Q psy12425          7 IPEGDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSDDR-FK-FTVLDDY----IIIFIKEIRKEDAGDYTVNLSNSSG   75 (591)
Q Consensus         7 v~~G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~-~~-~~~~~~~----~~l~i~~~~~~d~g~Y~c~~~n~~g   75 (591)
                      ...++.++|.|.+.| .|. ..|.|.|||+.+..... .. ....++.    +.|.|..-.-.+...|+|.+.....
T Consensus        11 ~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          11 TGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             cCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence            345677999999999 554 78999999998743311 11 1111222    3444443333355689999976543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.63  E-value=0.00039  Score=50.39  Aligned_cols=76  Identities=21%  Similarity=0.197  Sum_probs=47.7

Q ss_pred             cccEEEEEEEcCCCC-CeeEEecCCccCC---------C--------CCceEEE-EeCCeEEEEEcceecccceEEEEEE
Q psy12425        307 NHNAQFQCTITGCPK-PTISWLKGSREIT---------P--------SARHHIF-AEGDTYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       307 g~~~~l~c~~~~~p~-~~v~W~~~~~~~~---------~--------~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      |++++|.|....... ..+.|++......         .        ..+..+. .+....+|.|.+++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            678999998654332 3689987422100         0        0111111 1223458999999999999999997


Q ss_pred             E-eCCcceeeeeEEEE
Q psy12425        368 V-NKGGVKSTKAELII  382 (591)
Q Consensus       368 ~-n~~g~~~~~~~l~v  382 (591)
                      . ...|.....+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            6 45666666666655

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.62  E-value=0.00072  Score=51.20  Aligned_cols=71  Identities=14%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             cccceeccccEEEEEEEcCCC------CCeeEEecCCcc-----C----C--------CCCceEEE--EeCCeEEEEEcc
Q psy12425        300 RNANAIQNHNAQFQCTITGCP------KPTISWLKGSRE-----I----T--------PSARHHIF--AEGDTYTLIINS  354 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p------~~~v~W~~~~~~-----~----~--------~~~~~~~~--~~~~~~~l~i~~  354 (591)
                      ..+.+.+|+.|.|.|......      ...+.|++....     +    .        -..++.+.  ......+|.|.+
T Consensus         7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~   86 (119)
T cd05712           7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD   86 (119)
T ss_pred             CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence            445688999999999875322      346899974321     0    0        01233332  234457899999


Q ss_pred             eecccceEEEEEEEeC
Q psy12425        355 VYGVDADEYVCRAVNK  370 (591)
Q Consensus       355 ~~~~d~g~y~c~a~n~  370 (591)
                      ++.+|+|.|.|+....
T Consensus        87 l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          87 AQPEDSGKYFFRVELG  102 (119)
T ss_pred             CChhhCeEEEEEEEcC
Confidence            9999999999998664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=97.58  E-value=0.0018  Score=46.52  Aligned_cols=83  Identities=41%  Similarity=0.657  Sum_probs=60.8

Q ss_pred             CCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCC
Q psy12425        192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAG  271 (591)
Q Consensus       192 ~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g  271 (591)
                      +|..+.+......++.|+|..+.... ..+..|.+.+.......|............+.+.+|.++..|.+++++.+..|
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~   81 (93)
T cd00063           3 PPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG   81 (93)
T ss_pred             CCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCc
Confidence            34445555666789999999875433 35678999888766566766654323567889999999999999999998766


Q ss_pred             CCCC
Q psy12425        272 LSLP  275 (591)
Q Consensus       272 ~~~~  275 (591)
                      .+..
T Consensus        82 ~~~~   85 (93)
T cd00063          82 ESPP   85 (93)
T ss_pred             cCCC
Confidence            6543

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.58  E-value=0.00048  Score=49.37  Aligned_cols=65  Identities=17%  Similarity=0.198  Sum_probs=39.9

Q ss_pred             CCeEEEEEEecc-CCC-ceEEEEECCEEeecCC-ceeEEEeCC-e-EEEEEcccCCCCceEEEEEEEcCC
Q psy12425         10 GDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSDD-RFKFTVLDD-Y-IIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus        10 G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~-~~~~~~~~~-~-~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      |+.++|.|.+.| .|. ..+.|.|+|+.+.... .......++ . .......+.+.+...|+|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            778999999999 454 4999999997433221 112222222 2 112233344457889999997653

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.57  E-value=0.0006  Score=48.26  Aligned_cols=65  Identities=15%  Similarity=0.361  Sum_probs=40.4

Q ss_pred             ecCCeEEEEEEecc-CC-CceEEEEECCEEeecCCc-eeEEEeCCe-E-EEEEcccCCCCceEEEEEEEcC
Q psy12425          8 PEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDR-FKFTVLDDY-I-IIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         8 ~~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~-~-~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      ..|+..+|.|.+.| .| ...++|.|||+.+. +.. ..+...++. . ......+.+.+.-.|.|.+.-.
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            44667799999999 44 56889999999886 321 122222222 1 1112234566777799998653

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.46  E-value=0.00046  Score=51.05  Aligned_cols=71  Identities=10%  Similarity=0.045  Sum_probs=44.1

Q ss_pred             eeeeecCCeEEEEEEecc-CCC-ceEEEEECCEEeecCCce-eEEEeC--Ce----EEEEEcccCCCC-ceEEEEEEEcC
Q psy12425          4 ALYIPEGDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSDDRF-KFTVLD--DY----IIIFIKEIRKED-AGDYTVNLSNS   73 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~-~~~~~~--~~----~~l~i~~~~~~d-~g~Y~c~~~n~   73 (591)
                      ...+.+++.++|.|.+.| .|. ..|+|+|||+.+..+... ......  +.    +.|.|..-+-.+ .-.|+|.+.-.
T Consensus        12 ~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~   91 (115)
T cd05769          12 EAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFY   91 (115)
T ss_pred             hHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEe
Confidence            344556788999999998 565 589999999988654221 111111  11    345555433323 45799998755


Q ss_pred             C
Q psy12425         74 S   74 (591)
Q Consensus        74 ~   74 (591)
                      .
T Consensus        92 g   92 (115)
T cd05769          92 G   92 (115)
T ss_pred             C
Confidence            3

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.46  E-value=0.00094  Score=48.46  Aligned_cols=69  Identities=13%  Similarity=0.208  Sum_probs=48.3

Q ss_pred             CceeeeecCCeEEEEEEeccCC--C-ceEEEEEC--CE-E-----------e-ecCCceeEE--EeCCeEEEEEcccCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ--P-MEVSLTKN--GR-V-----------V-QSDDRFKFT--VLDDYIIIFIKEIRKE   61 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p--~-~~v~W~~~--~~-~-----------~-~~~~~~~~~--~~~~~~~l~i~~~~~~   61 (591)
                      +....+..|+.++|.|.++|.-  . ..++|.|.  |. +           . ....++.+.  ...+..+|+|.+|+.+
T Consensus         5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence            3467899999999999997743  3 46889884  21 0           0 011233222  3445689999999999


Q ss_pred             CceEEEEEE
Q psy12425         62 DAGDYTVNL   70 (591)
Q Consensus        62 d~g~Y~c~~   70 (591)
                      |++.|.|..
T Consensus        85 DTa~Y~Ca~   93 (115)
T cd05721          85 QTDIYFCKI   93 (115)
T ss_pred             HCeEEEEEe
Confidence            999999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.46  E-value=0.061  Score=48.66  Aligned_cols=231  Identities=14%  Similarity=0.150  Sum_probs=116.8

Q ss_pred             CCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CC--
Q psy12425        245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PK--  321 (591)
Q Consensus       245 ~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~--  321 (591)
                      ....|.|..|...++|.|.-+..+..+..... ....+...     .+|.+...  ...+.+|+...-.|.+..+ |.  
T Consensus       180 p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~-~~VtV~~y-----r~Psvsv~--~~PvL~Ge~Y~AtC~va~YYPp~S  251 (466)
T PHA03270        180 PTQRLVIQELTLATQGMYYWARGPADRPHRYG-TWTRVRMF-----RRPSLSIR--PHAVLEGEPFGATCVAANYYPGDR  251 (466)
T ss_pred             CcceEEEEEcccccceEEEEEEecCCCceeee-eEEEEEEe-----cCCccccc--CCccccCCCceEEEEeeeecCCCc
Confidence            44678999999999999999987766532221 22333332     45665443  3347899999999999764 33  


Q ss_pred             CeeEEecCCccCCCCCceE--EE--EeCC--eEEEEEcceecc-cceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCc
Q psy12425        322 PTISWLKGSREITPSARHH--IF--AEGD--TYTLIINSVYGV-DADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF  394 (591)
Q Consensus       322 ~~v~W~~~~~~~~~~~~~~--~~--~~~~--~~~l~i~~~~~~-d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~  394 (591)
                      ..+.|+.|+..+.......  ..  .++-  ..++++...... ..-..+|.+.-..+..+.+ .+.-...|.+-.+|.+
T Consensus       252 v~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~s-R~nAa~~P~VY~~P~I  330 (466)
T PHA03270        252 AAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFS-RRNATGAPTVLPRPTI  330 (466)
T ss_pred             eEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccce-eecccccCccccCCeE
Confidence            3689999999885422211  11  2221  113333222211 1136889976443332111 1122222333222221


Q ss_pred             ccceeecCCCeEEEEEeeeccC-CCeEEEeeCCeEeeeccceEEE--ecCCeeEEEEe---ccCCCcceeEEEEEEcC-C
Q psy12425        395 RDTAYFDKGENVVVKIPFTGYP-KPKITWYRDNEVIESGGHFHVE--TSERHAILTIR---DASNVDTAPYRVVAEND-L  467 (591)
Q Consensus       395 ~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~---~~~~~~~g~y~c~a~n~-~  467 (591)
                        .+.+..|.-   .|.+.-.| ...+.|+.++......+.....  -.+......|.   .++. +...|+|.+.-- .
T Consensus       331 --sv~F~dG~A---VCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plSd-~~~eYTCrl~GYP~  404 (466)
T PHA03270        331 --EMEFGGDEA---VCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLSR-EHSEYTCRLVGYPA  404 (466)
T ss_pred             --EEEEeCCEE---EEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeeccccccc-CCceEEEEEeecCC
Confidence              122333432   35554444 4489999887665433221111  11112222222   2222 336999998732 2


Q ss_pred             CccceEEEEEecCCCCCCCCCee
Q psy12425        468 GMDSAIVKIQISDRPDPPQFPTV  490 (591)
Q Consensus       468 g~~~~~~~~~v~~~p~~p~~~~~  490 (591)
                      +--..+.+......|..|....+
T Consensus       405 ~lP~fe~~~~~dasP~~~~~~~V  427 (466)
T PHA03270        405 TVPVLEHHGRHEPPPRDPVGQQV  427 (466)
T ss_pred             CCCcccccccccCCCcCcCCCee
Confidence            22233333344444544544444

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.43  E-value=0.0014  Score=47.00  Aligned_cols=65  Identities=25%  Similarity=0.560  Sum_probs=40.1

Q ss_pred             cccEEEEEEEcCC-CCC-eeEEecCCccCCCCC-ceEEEEeC-CeE-EEEEcceecccceEEEEEEEeCC
Q psy12425        307 NHNAQFQCTITGC-PKP-TISWLKGSREITPSA-RHHIFAEG-DTY-TLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       307 g~~~~l~c~~~~~-p~~-~v~W~~~~~~~~~~~-~~~~~~~~-~~~-~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      ++.+.|.|.+.|. |.. .+.|.+++....... ......++ +.+ ......+...+...|+|.+.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            6789999999994 543 899999985332221 11222222 222 22334455567889999998754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.43  E-value=0.055  Score=49.48  Aligned_cols=231  Identities=14%  Similarity=0.181  Sum_probs=120.3

Q ss_pred             ceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CC--Ce
Q psy12425        247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PK--PT  323 (591)
Q Consensus       247 ~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~--~~  323 (591)
                      ..|+|..+...++|.|.-+..+..|... ......+...     .+|.+...  ...+.+|+...-.|.+..+ |.  ..
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~-~~~~VtV~~y-----r~Psvsv~--~~PvL~Ge~y~A~C~aa~YYPp~Sv~  269 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLV-NSTSVTVSTY-----NAPLVDLS--VHPSLKGENYRAVCVVASYFPHSSVK  269 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCcee-eeeEEEEEEe-----cCCccccc--CCccccCCCceEEEEeeeecCCCceE
Confidence            4589999999999999876655444221 1122333322     45655443  3447899999999999764 33  36


Q ss_pred             eEEecCCccCCC-CC-c--eEEEEeCC---eEEEEEcceec-ccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcc
Q psy12425        324 ISWLKGSREITP-SA-R--HHIFAEGD---TYTLIINSVYG-VDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFR  395 (591)
Q Consensus       324 v~W~~~~~~~~~-~~-~--~~~~~~~~---~~~l~i~~~~~-~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~  395 (591)
                      +.|+.|+.++.. .. .  .....+|.   ..+|++..... ...-..+|.+.-..+..+. ..+.-...|.+-.+|.+ 
T Consensus       270 ~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~-~RfsAt~~P~Vy~~P~I-  347 (486)
T PHA03273        270 LRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSF-ARIAKAGTPSVFVAPTV-  347 (486)
T ss_pred             EEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcce-eeccccccCccccCCeE-
Confidence            899999998872 22 1  12222332   12333433222 2234689997654333211 11122222333222221 


Q ss_pred             cceeecCCCeEEEEEeeeccCC--CeEEEeeCCeEeeeccc-eEEE--ecCCeeEEEEec---cCCCcc-eeEEEEEEc-
Q psy12425        396 DTAYFDKGENVVVKIPFTGYPK--PKITWYRDNEVIESGGH-FHVE--TSERHAILTIRD---ASNVDT-APYRVVAEN-  465 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~~-~~~~--~~~~~~~l~i~~---~~~~~~-g~y~c~a~n-  465 (591)
                       ...+..|.   ..|.+.-.|.  ..+.|+.++. ...... ..+.  -.+......|.+   +...|. -.|+|.+.. 
T Consensus       348 -s~~F~~G~---AVCtA~CVP~egV~l~W~v~D~-~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~dgp~eYTCrl~GY  422 (486)
T PHA03273        348 -SVTVEDGD---AVCTAKCVPSTGVFVSWSVNDH-LPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEENGEREYSCIIEGY  422 (486)
T ss_pred             -EEEEeCCE---EEEecccccCCCeeEEEEccCC-CCCCcccccccccCCCCCCceeeeccccccccCCceeEEEEEeec
Confidence             12233343   3477776665  6899988773 211111 1111  112234444554   333331 289999874 


Q ss_pred             CCCccceEEEEEecCCCCCCCCCeeee
Q psy12425        466 DLGMDSAIVKIQISDRPDPPQFPTVED  492 (591)
Q Consensus       466 ~~g~~~~~~~~~v~~~p~~p~~~~~~~  492 (591)
                      ..+.......-.....|..+....+..
T Consensus       423 P~~lP~Fe~~~~yDASP~~~~~p~vis  449 (486)
T PHA03273        423 PDGLPMFSDTVVYDASPIVEDEPVLTS  449 (486)
T ss_pred             CCCCCceeeeeeecCCCccCCCcEEEE
Confidence            233334444444455666666555543

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.42  E-value=0.00055  Score=48.73  Aligned_cols=67  Identities=4%  Similarity=-0.081  Sum_probs=40.3

Q ss_pred             eeeeecCCeEEEEEEecc-CC-CceEEEEECCEEeecCCc-eeEEEeCCe----EEEEEcccCCCCceEEEEEEEc
Q psy12425          4 ALYIPEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDR-FKFTVLDDY----IIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~----~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      .-++..++.++|.|.+.| .| ...++|.|||+.+..+.. ......++.    +.|.|..-.  ..-.|+|.+.-
T Consensus        10 ~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H   83 (96)
T cd07697          10 KKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKH   83 (96)
T ss_pred             HHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEE
Confidence            344556788999999999 44 558899999998754421 111122222    234333221  22349999865

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.41  E-value=0.00045  Score=50.18  Aligned_cols=69  Identities=7%  Similarity=0.072  Sum_probs=41.7

Q ss_pred             eeeecCCeEEEEEEecc-CCC-ceEEEEECCEEeecCCce--eEEEe---CCe----EEEEEcccCCCCceEEEEEEEcC
Q psy12425          5 LYIPEGDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSDDRF--KFTVL---DDY----IIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~--~~~~~---~~~----~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      ..+..|+.++|.|.+.| .|. ..++|+|||+.+......  .....   ++.    ..|.|..-.-.+...|+|.+.-.
T Consensus        11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~   90 (102)
T cd05768          11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE   90 (102)
T ss_pred             HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence            34556889999999999 443 478999999987643211  11111   121    34444332223455799998654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.40  E-value=0.00079  Score=47.08  Aligned_cols=63  Identities=16%  Similarity=0.227  Sum_probs=42.3

Q ss_pred             cCCeEEEEEEecc-CC-CceEEEEECCEEeecCCceeEEE--eCCe----EEEEEcccCCCCceEEEEEEEcCC
Q psy12425          9 EGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDRFKFTV--LDDY----IIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         9 ~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~~--~~~~----~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      .++.+.|.|.+.+ .| ...|.|++||..+..........  .++.    +.|.+.   ..+...|+|.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence            4899999999998 55 44899999999886553222111  2222    345555   455557999997653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.40  E-value=0.003  Score=46.64  Aligned_cols=70  Identities=9%  Similarity=0.219  Sum_probs=42.5

Q ss_pred             ecCCCeEEEEEeeecc-CC-CeEEEeeCCeEeeeccceEEEecCC-----eeEEEEeccCCCcce-eEEEEEEcCCCcc
Q psy12425        400 FDKGENVVVKIPFTGY-PK-PKITWYRDNEVIESGGHFHVETSER-----HAILTIRDASNVDTA-PYRVVAENDLGMD  470 (591)
Q Consensus       400 ~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g-~y~c~a~n~~g~~  470 (591)
                      ...|+.++|.|.+.|. |. ..++|++||..+...........+.     .+.|.+.. ...|.+ .|+|.+.......
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l~~   95 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTLQA   95 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCCCC
Confidence            3467889999999875 43 5899999999875432211111111     23343443 333434 5999998875433

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd00096 Ig Immunoglobulin domain

Probab=97.40  E-value=0.00067  Score=45.94  Aligned_cols=62  Identities=29%  Similarity=0.407  Sum_probs=46.7

Q ss_pred             EEEEEeeeccCCCeEEEeeCCeEeeeccc----eEEEecCCeeEEEEeccCCCcceeEEEEEEcCC
Q psy12425        406 VVVKIPFTGYPKPKITWYRDNEVIESGGH----FHVETSERHAILTIRDASNVDTAPYRVVAENDL  467 (591)
Q Consensus       406 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~  467 (591)
                      +.|.|.+.+.+...+.|++++........    ...........|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            36899998888889999998876543321    111122356789999999999999999998876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.39  E-value=0.0019  Score=45.99  Aligned_cols=74  Identities=18%  Similarity=0.237  Sum_probs=49.2

Q ss_pred             eEEEEEeeecc-CCCeEEEeeCCe----Eeee-----c--------cceEEE-ecCCeeEEEEeccCCCcceeEEEEEE-
Q psy12425        405 NVVVKIPFTGY-PKPKITWYRDNE----VIES-----G--------GHFHVE-TSERHAILTIRDASNVDTAPYRVVAE-  464 (591)
Q Consensus       405 ~~~l~c~~~~~-p~~~v~W~~~~~----~~~~-----~--------~~~~~~-~~~~~~~l~i~~~~~~~~g~y~c~a~-  464 (591)
                      +++|.|..... ...+|+|.+...    .+..     +        ++..+. ......+|.|.+++.+|.|.|.|.+. 
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence            57899998642 344799987421    1210     0        122221 12346899999999999999999974 


Q ss_pred             cCCCccceEEEEEe
Q psy12425        465 NDLGMDSAIVKIQI  478 (591)
Q Consensus       465 n~~g~~~~~~~~~v  478 (591)
                      ...|+...+..|.|
T Consensus        82 fP~G~~~~~~~l~~   95 (96)
T cd05887          82 FPLGNTQSSTTVTV   95 (96)
T ss_pred             CCCCCeeEEEEEEE
Confidence            56787777777765

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.39  E-value=0.0011  Score=47.16  Aligned_cols=63  Identities=16%  Similarity=0.178  Sum_probs=39.4

Q ss_pred             ecCCeEEEEEEecc-CC-CceEEEEECCEEeecCCc-eeEEEeCCe-----EEEEEcccCCCCceEEEEEEEcC
Q psy12425          8 PEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDR-FKFTVLDDY-----IIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         8 ~~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~-----~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      ..|+.++|.|.+.| .| ...++|.|||..+..+.. ..+...++.     ..|.+   .+++...|+|.+.-.
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~   83 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHW   83 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeC
Confidence            34666899999999 45 468999999998765311 111122221     23443   345556899998654

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.31  E-value=0.002  Score=48.46  Aligned_cols=69  Identities=17%  Similarity=0.333  Sum_probs=47.1

Q ss_pred             ccceeccccEEEEEEEcCCC--CCeeEEecCC--ccC---------------C--CCCceEEEEeC--CeEEEEEcceec
Q psy12425        301 NANAIQNHNAQFQCTITGCP--KPTISWLKGS--REI---------------T--PSARHHIFAEG--DTYTLIINSVYG  357 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~---------------~--~~~~~~~~~~~--~~~~l~i~~~~~  357 (591)
                      ...+..|+.++|.|...+..  ...+.|++..  ...               .  ...++....+.  ....|.|.++..
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP   85 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence            45578999999999976533  4568998732  111               0  01234444333  345799999999


Q ss_pred             ccceEEEEEEEe
Q psy12425        358 VDADEYVCRAVN  369 (591)
Q Consensus       358 ~d~g~y~c~a~n  369 (591)
                      +|+|.|.|.+..
T Consensus        86 ~Dsa~YyCa~~~   97 (117)
T cd04981          86 EDTAVYYCARGL   97 (117)
T ss_pred             HHCEEEEEEEEc
Confidence            999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.30  E-value=0.0015  Score=46.46  Aligned_cols=66  Identities=18%  Similarity=0.382  Sum_probs=42.1

Q ss_pred             cccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEE-EeCC----eEEEEEcceecccceEEEEEEEeCCc
Q psy12425        307 NHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIF-AEGD----TYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       307 g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      |+.+.|+|.+ .++|.+.|.|+.++..+......... ..++    ...|.+..-..++...++|.|.+..-
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            6799999976 56999999999988776211111111 1111    12466655445567789999998654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.27  E-value=0.13  Score=47.33  Aligned_cols=232  Identities=13%  Similarity=0.152  Sum_probs=117.0

Q ss_pred             CCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CC--
Q psy12425        245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PK--  321 (591)
Q Consensus       245 ~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~--  321 (591)
                      ....|+|..+...++|.|.-+..+..-..........+...     .+|.+...  ...+.+|+...-.|.+..+ |.  
T Consensus       287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y-----r~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~S  359 (566)
T PHA03269        287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY-----KRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHS  359 (566)
T ss_pred             CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe-----cCCCcccc--CCccccCCCceEEEEeeeecCCCc
Confidence            34568999999999999976665432111111233334433     45544433  3447899999999999764 32  


Q ss_pred             CeeEEecCCccCCCCCc---eEEEEeCCe---EEEEEcceeccc--ceEEEEEEEeCCcceeeeeEEEEecCCcccCCCC
Q psy12425        322 PTISWLKGSREITPSAR---HHIFAEGDT---YTLIINSVYGVD--ADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR  393 (591)
Q Consensus       322 ~~v~W~~~~~~~~~~~~---~~~~~~~~~---~~l~i~~~~~~d--~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~  393 (591)
                      ..+.|+.|+..+.....   .....+|..   .+|++......+  .-..+|.+.-..+..+. ..+.-...|.+-..|.
T Consensus       360 vrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~-tRfnAaatP~VY~~Pt  438 (566)
T PHA03269        360 VIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSH-MKYSAAVTPDVYPFPN  438 (566)
T ss_pred             eEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchh-eecccccCCccccCCe
Confidence            36899999888875221   122233321   133332111111  23579997654332211 1112222233322222


Q ss_pred             cccceeecCCCeEEEEEeeeccCC--CeEEEeeCCeEeeeccceEEE-ecCCeeEEEEec---cCCCc-ceeEEEEEEcC
Q psy12425        394 FRDTAYFDKGENVVVKIPFTGYPK--PKITWYRDNEVIESGGHFHVE-TSERHAILTIRD---ASNVD-TAPYRVVAEND  466 (591)
Q Consensus       394 ~~~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~---~~~~~-~g~y~c~a~n~  466 (591)
                      +  ...+..|.   ..|.+.-.|.  ..+.|+.++............ -.+..+...|++   +...| --.|+|++..-
T Consensus       439 I--Sm~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~GY  513 (566)
T PHA03269        439 V--SIEIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDGY  513 (566)
T ss_pred             E--EEEEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEeec
Confidence            1  12233343   3477766665  479999887764332221111 112233444544   33333 25899998732


Q ss_pred             -CCccceEEEEEecCCCCCCCCCe
Q psy12425        467 -LGMDSAIVKIQISDRPDPPQFPT  489 (591)
Q Consensus       467 -~g~~~~~~~~~v~~~p~~p~~~~  489 (591)
                       .+.......-.....|..+....
T Consensus       514 P~~lP~Fsdt~~YDASP~a~~~Pv  537 (566)
T PHA03269        514 PKKFPPFSAVYTYDASSSASTFPL  537 (566)
T ss_pred             CCCCCccceeeeecCCCcccCCce
Confidence             23333333333334444444333

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.25  E-value=0.0012  Score=42.26  Aligned_cols=51  Identities=14%  Similarity=0.167  Sum_probs=37.8

Q ss_pred             ecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEc
Q psy12425          8 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus         8 ~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      ...+.|.|+|...    .+|.|++ |..+....         ..+|.+-....+-.|.|.|.+.+
T Consensus         4 e~~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           4 ESEGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ecCceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            4456899999762    4699999 55443221         34788888888999999998876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.25  E-value=0.0031  Score=45.01  Aligned_cols=65  Identities=11%  Similarity=0.028  Sum_probs=40.3

Q ss_pred             cCCeEEEEEEe-ccCCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425          9 EGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         9 ~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      ......+.|.+ .|+|++.|+|+++..   ...........+     .+.|.+.....+|.-.|+|++.+..-.
T Consensus        14 ~~~~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          14 GEPVTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             CCccEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            34567788998 469999999999711   111111111111     246777655556666899999887533

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.21  E-value=0.006  Score=42.39  Aligned_cols=72  Identities=39%  Similarity=0.647  Sum_probs=48.1

Q ss_pred             cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCC---CceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCC
Q psy12425         96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM---PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG  170 (591)
Q Consensus        96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g  170 (591)
                      +.+......++.++|.++.....   ..|.+.+.....   ..|...........+.+.+|.++..|.|+++|.+..|
T Consensus         7 ~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g   81 (83)
T smart00060        7 LRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG   81 (83)
T ss_pred             EEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcccC
Confidence            34444556699999997653332   445555543322   2355544444467899999999999999999997644

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.16  E-value=0.002  Score=44.96  Aligned_cols=58  Identities=19%  Similarity=0.429  Sum_probs=38.3

Q ss_pred             cEEEEEEEcCCCCC--eeEEecCCc--cC----------------CCCCceEEEEe--CCeEEEEEcceecccceEEEEE
Q psy12425        309 NAQFQCTITGCPKP--TISWLKGSR--EI----------------TPSARHHIFAE--GDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       309 ~~~l~c~~~~~p~~--~v~W~~~~~--~~----------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      ++.|.|.+......  .+.|++...  ..                ....++.+...  .+..+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            36788887665443  678876331  00                11234444433  5567899999999999999996

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.15  E-value=0.0024  Score=46.34  Aligned_cols=68  Identities=18%  Similarity=0.363  Sum_probs=42.1

Q ss_pred             eeccccEEEEEEEcC-CC-CCeeEEecCCccCCCCCc-eEEEEe-CCeE----EEEEcceecccceEEEEEEEeCC
Q psy12425        304 AIQNHNAQFQCTITG-CP-KPTISWLKGSREITPSAR-HHIFAE-GDTY----TLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~-~~~~----~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      ...++.++|.|.+.| +| ...|.|+++|..+..+.. .....+ ++.+    .|.+..-...+...|+|.+.+..
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            446778999999988 45 568999999988753321 111122 2322    23333333334678999998754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.14  E-value=0.0036  Score=42.61  Aligned_cols=62  Identities=16%  Similarity=0.300  Sum_probs=39.1

Q ss_pred             EEEEEeeecc-CC-CeEEEeeCCeEeeeccce-EEEecCC-----eeEEEEeccCCCcceeEEEEEEcCC
Q psy12425        406 VVVKIPFTGY-PK-PKITWYRDNEVIESGGHF-HVETSER-----HAILTIRDASNVDTAPYRVVAENDL  467 (591)
Q Consensus       406 ~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~-~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~  467 (591)
                      ++|.|.+.|. |. ..+.|+++|..+..+... .....++     .+.|.|.....++...|+|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6799999986 44 589999999874332111 1111111     3345555546677789999997653

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.14  E-value=0.0041  Score=44.26  Aligned_cols=72  Identities=11%  Similarity=0.072  Sum_probs=43.3

Q ss_pred             eeeecC--CeEEEEEEec-cCCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425          5 LYIPEG--DNTKVKIFYA-GDQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         5 ~~v~~G--~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      ++|..|  ..+.+.|.+. |.|++.|+|+++..   ...........+     .+.|.+.....+|.-.|+|++.+..-.
T Consensus         8 ~~~~~~~~~~~va~C~s~~gkPaa~IsW~~~~~---g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~   84 (95)
T cd07703           8 VEVSAGTIPVPVAKCVSANGRPPARISWSSTLG---GNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ   84 (95)
T ss_pred             EEeecCCCccEEEEEEcCCCCCCcEEEEEcCCC---CCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            344444  3578899876 59999999999821   111111111111     246767655556666899999987644


Q ss_pred             eEE
Q psy12425         77 VSG   79 (591)
Q Consensus        77 ~~~   79 (591)
                      ...
T Consensus        85 ~~~   87 (95)
T cd07703          85 EPQ   87 (95)
T ss_pred             CCe
Confidence            433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.13  E-value=0.007  Score=43.25  Aligned_cols=67  Identities=25%  Similarity=0.524  Sum_probs=41.9

Q ss_pred             eccccEEEEEEEcC-CCCC-eeEEecCCccCCCCC-ceEEEEeCC-eE-EEEEcceecccceEEEEEEEeCC
Q psy12425        305 IQNHNAQFQCTITG-CPKP-TISWLKGSREITPSA-RHHIFAEGD-TY-TLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       305 ~~g~~~~l~c~~~~-~p~~-~v~W~~~~~~~~~~~-~~~~~~~~~-~~-~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      ..|..+.|.|.+.| +|.. .+.|++++..+.... ......+++ .+ ......+...+...|+|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            45788999999988 4543 789999998876541 112222222 22 22222344556678999998754

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.13  E-value=0.0019  Score=46.21  Aligned_cols=30  Identities=10%  Similarity=0.069  Sum_probs=24.2

Q ss_pred             eeeecCCeEEEEEEeccC--C-CceEEEEECCE
Q psy12425          5 LYIPEGDNTKVKIFYAGD--Q-PMEVSLTKNGR   34 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~--p-~~~v~W~~~~~   34 (591)
                      -.+..|+.++|.|.+.|.  | ...|+|.|||.
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~   41 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG   41 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence            346679999999999987  4 45889999874

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02633 hypothetical protein; Provisional

Probab=97.10  E-value=0.0024  Score=39.64  Aligned_cols=41  Identities=20%  Similarity=0.103  Sum_probs=35.6

Q ss_pred             CeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEecCC
Q psy12425         49 DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP   89 (591)
Q Consensus        49 ~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~~p   89 (591)
                      ....|.|-++..+|+|.|.|..+|..-....++.+.|....
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            34479999999999999999999998888888999998654

>KOG4802|consensus

Probab=97.05  E-value=0.0091  Score=53.08  Aligned_cols=123  Identities=20%  Similarity=0.192  Sum_probs=80.6

Q ss_pred             eeEEEEeccCCCcceeEEEEEEcCCCccc---eEEEEEec---CCCCCCCCCeeeeecCC---eeEEEeeccccCCCcce
Q psy12425        443 HAILTIRDASNVDTAPYRVVAENDLGMDS---AIVKIQIS---DRPDPPQFPTVEDIGHD---SLALVWRAPIWDGGSNI  513 (591)
Q Consensus       443 ~~~l~i~~~~~~~~g~y~c~a~n~~g~~~---~~~~~~v~---~~p~~p~~~~~~~~~~~---~v~l~W~~p~~~~~~~~  513 (591)
                      ...+...++.+.--|.|++.|.|..|.-.   -+-.+...   .+|.+|.++.+..+..+   ...|.|.|+.  ..-++
T Consensus       208 e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~--sdlPv  285 (516)
T KOG4802|consen  208 ENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSK--SDLPV  285 (516)
T ss_pred             CceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCC--CCCcc
Confidence            34777888999999999999999887542   22222222   24566777776554322   2566787764  44689


Q ss_pred             eeEEEEeeeCCCC---ceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCC
Q psy12425        514 TNYIVEKREHPMS---SWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST  567 (591)
Q Consensus       514 ~~y~v~~~~~~~~---~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~  567 (591)
                      ..|.|.|......   .....  ..-....+.|.+|.|+..|.+.|+|..-.|.++.-.
T Consensus       286 ~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rLks  344 (516)
T KOG4802|consen  286 EKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRLKS  344 (516)
T ss_pred             eeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccccc
Confidence            9999998754311   00000  011112444999999999999999999999876443

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=96.99  E-value=0.0044  Score=45.77  Aligned_cols=80  Identities=28%  Similarity=0.309  Sum_probs=59.5

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe---ceeeeeEEEEcCcc--cCceEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV---GNTRFTTMAITGLS--PGHQYEFRV  554 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~---~~~~~~~~~i~~l~--~~~~Y~~~v  554 (591)
                      ....+|.++++... .....|+|+++.  +...-..|.|+++......|..+   .+...+...+++..  ....|.+||
T Consensus        20 ~~lp~P~nv~~~s~-nf~~iL~W~~~~--~~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV   96 (107)
T PF01108_consen   20 ASLPAPQNVTVDSV-NFKHILRWDPGP--GSPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARV   96 (107)
T ss_dssp             SSGSSCEEEEEEEE-TTEEEEEEEEST--TSSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred             ccCCCCCeeEEEEE-CCceEEEeCCCC--CCCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence            34467788888764 567899999743  23356899999997778899887   45566788887754  688999999


Q ss_pred             EEEcCCcC
Q psy12425        555 YAENVYGR  562 (591)
Q Consensus       555 ~A~n~~G~  562 (591)
                      +|.-....
T Consensus        97 ~A~~~~~~  104 (107)
T PF01108_consen   97 RAEVGNQT  104 (107)
T ss_dssp             EEEETTEE
T ss_pred             EEEeCCcc
Confidence            99665443

...

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.98  E-value=0.0012  Score=49.13  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=46.1

Q ss_pred             cCCeEEEEEEecc-----CCCceEEEEECCEEeecCCc--eeEE-----------EeCCeEEEEEcccCCCCceEEEEEE
Q psy12425          9 EGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSDDR--FKFT-----------VLDDYIIIFIKEIRKEDAGDYTVNL   70 (591)
Q Consensus         9 ~G~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~--~~~~-----------~~~~~~~l~i~~~~~~d~g~Y~c~~   70 (591)
                      =+++|.|.|.+..     .+...|.|.++|+.+-.-+.  .+..           ...+..+|.+...+.- .|.|+|.+
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV  104 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV  104 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence            3689999999964     13457999999987632211  1110           0112245777765444 89999999


Q ss_pred             EcCCeeeEEEEEEEEe
Q psy12425         71 SNSSGSVSGTFTINIT   86 (591)
Q Consensus        71 ~n~~g~~~~~~~l~v~   86 (591)
                      .......+..+.|...
T Consensus       105 t~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  105 TELSREGETTIELKYR  120 (130)
T ss_dssp             EETTEEEEEEEEEEE-
T ss_pred             EecCCCceEEEEEEEE
Confidence            9888877777777764

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.95  E-value=0.0044  Score=43.56  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=42.3

Q ss_pred             eecCCeEEEEEEecc-CCC--ceEEEEECCEEeecCCcee-E---EEeCCeEEEEEcccCCCCce-EEEEEEEcC
Q psy12425          7 IPEGDNTKVKIFYAG-DQP--MEVSLTKNGRVVQSDDRFK-F---TVLDDYIIIFIKEIRKEDAG-DYTVNLSNS   73 (591)
Q Consensus         7 v~~G~~~~l~C~~~~-~p~--~~v~W~~~~~~~~~~~~~~-~---~~~~~~~~l~i~~~~~~d~g-~Y~c~~~n~   73 (591)
                      +.+|..+++.|.+.+ .|.  ..+.|+|+...+....-.. +   ........+++.- +++|.| .|.|.|.-.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence            579999999999976 554  7899999877665432111 0   0011223455554 366666 999998643

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.92  E-value=0.013  Score=41.58  Aligned_cols=66  Identities=24%  Similarity=0.396  Sum_probs=41.8

Q ss_pred             eccccEEEEEEEcC-CC-CCeeEEecCCccCCCCCceEEEEeCC-eE-EEEEcceecccceEEEEEEEeC
Q psy12425        305 IQNHNAQFQCTITG-CP-KPTISWLKGSREITPSARHHIFAEGD-TY-TLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       305 ~~g~~~~l~c~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~~~~~-~~-~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      ..|....|.|.+.| +| ...+.|.+||..+.......+..+++ .+ ......+.+.+...|+|.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            45666799999998 34 45789999998876222222222222 22 2222345567778899999874

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.90  E-value=0.016  Score=41.26  Aligned_cols=65  Identities=14%  Similarity=0.317  Sum_probs=39.9

Q ss_pred             ccccEEEEEEEcC-CC-CCeeEEecCCccCCCCCce-EEEEe-CCeEE-EEEcceecccceEEEEEEEeC
Q psy12425        306 QNHNAQFQCTITG-CP-KPTISWLKGSREITPSARH-HIFAE-GDTYT-LIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       306 ~g~~~~l~c~~~~-~p-~~~v~W~~~~~~~~~~~~~-~~~~~-~~~~~-l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .++..+|.|.+.| +| ...+.|.++|..+..+... ....+ ++.+. .....+.+.+...|+|.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeC
Confidence            4566899999998 44 3578999999887543221 12222 22221 122234456667899999775

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.87  E-value=0.0026  Score=40.46  Aligned_cols=52  Identities=21%  Similarity=0.378  Sum_probs=36.0

Q ss_pred             cCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        401 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       401 ~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                      ..|..|+|+|...+..   +.|.+++..+..          ....+.+.+-. ++.|.|.|.+.+.
T Consensus         5 isGTtVtlTCP~~~~~---i~W~~n~~~~~g----------~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGDD---IKWKKNDQVSQG----------SDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCCC---ceEEeCCccCCC----------CCceEEeeccC-CCCceEEEEeCCC
Confidence            4689999999765332   999999855432          22344444555 8899999999643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.83  E-value=0.013  Score=41.79  Aligned_cols=72  Identities=14%  Similarity=0.243  Sum_probs=45.2

Q ss_pred             eEEEEEeeec-cCCCeEEEeeCCe----Eeee-----c--------cceEEEe-cCCeeEEEEeccCCCcceeEEEEEEc
Q psy12425        405 NVVVKIPFTG-YPKPKITWYRDNE----VIES-----G--------GHFHVET-SERHAILTIRDASNVDTAPYRVVAEN  465 (591)
Q Consensus       405 ~~~l~c~~~~-~p~~~v~W~~~~~----~~~~-----~--------~~~~~~~-~~~~~~l~i~~~~~~~~g~y~c~a~n  465 (591)
                      .++|.|.... ....+|+|.+...    .+..     +        ++..+.. .....+|.|.+++.+|.|.|.|...+
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t   81 (96)
T cd05889           2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT   81 (96)
T ss_pred             CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence            5788888753 2455788987432    1110     0        1222211 12468999999999999999999976


Q ss_pred             C-CCccceEEEE
Q psy12425        466 D-LGMDSAIVKI  476 (591)
Q Consensus       466 ~-~g~~~~~~~~  476 (591)
                      - .|.....+.+
T Consensus        82 ~P~g~~~~~i~~   93 (96)
T cd05889          82 YPQGSWEKVIEV   93 (96)
T ss_pred             CCCCCeEEEEEE
Confidence            5 5655555444

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PHA02982 hypothetical protein; Provisional

Probab=96.80  E-value=0.019  Score=45.94  Aligned_cols=119  Identities=12%  Similarity=0.164  Sum_probs=76.8

Q ss_pred             ccceeccccEEEEEEEcC-CCCCeeEEecCCccC-----------C--------CCCceEEEEeCCeEEEEEcceecccc
Q psy12425        301 NANAIQNHNAQFQCTITG-CPKPTISWLKGSREI-----------T--------PSARHHIFAEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~-----------~--------~~~~~~~~~~~~~~~l~i~~~~~~d~  360 (591)
                      ++....++.|.|.|.... ..-.+..|..+....           .        ....+.+..++...+|+|..+..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            445667899999999643 333467887743211           1        12346677888889999999999999


Q ss_pred             eEEEEEEEeCCcceee-eeEEEEecCCcccCCCCcccceee-cCCCeEEEEEeeeccCCCeEEEeeCCeE
Q psy12425        361 DEYVCRAVNKGGVKST-KAELIIMTAPKFNVPPRFRDTAYF-DKGENVVVKIPFTGYPKPKITWYRDNEV  428 (591)
Q Consensus       361 g~y~c~a~n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~-~~g~~~~l~c~~~~~p~~~v~W~~~~~~  428 (591)
                      |.|+|.|....+.... ...+.|+..-..         ... .....-.+.|-+-+.-.+...|..+|..
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~---------~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQKEDIL---------YVVEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEecceEE---------EEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            9999999987765543 555666321110         011 2344557889886654443488887753

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.79  E-value=0.02  Score=40.96  Aligned_cols=64  Identities=19%  Similarity=0.223  Sum_probs=40.0

Q ss_pred             ccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEE--EeCC---eEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        308 HNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIF--AEGD---TYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       308 ~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      ....+.|.+ .|+|.+.|.|+++...   .......  .++.   ...|.+.....++...|+|++.+..-..
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~---~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGG---EAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCC---cceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            457789998 6799999999987211   1111111  1221   2256666556666678999999875433

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.76  E-value=0.01  Score=42.27  Aligned_cols=67  Identities=24%  Similarity=0.437  Sum_probs=40.6

Q ss_pred             ccccEEEEEEEcC-CCC-CeeEEecCCccCCCCCc-e-EEEEeCCeE----EEEEcceecccceEEEEEEEeCCc
Q psy12425        306 QNHNAQFQCTITG-CPK-PTISWLKGSREITPSAR-H-HIFAEGDTY----TLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       306 ~g~~~~l~c~~~~-~p~-~~v~W~~~~~~~~~~~~-~-~~~~~~~~~----~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      ....+.|.|.+.| +|. ..|.|.++|..+..... . ....+++.+    .|.+..-...+...|+|.+.+...
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence            4566899999988 454 67899999887643221 1 112233333    233332223356789999987643

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA02982 hypothetical protein; Provisional

Probab=96.75  E-value=0.0045  Score=49.33  Aligned_cols=74  Identities=11%  Similarity=0.248  Sum_probs=55.5

Q ss_pred             eeeeecCCeEEEEEEecc-CCCceEEEEECC-EEee----------c--------CCceeEEEeCCeEEEEEcccCCCCc
Q psy12425          4 ALYIPEGDNTKVKIFYAG-DQPMEVSLTKNG-RVVQ----------S--------DDRFKFTVLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~-~~~~----------~--------~~~~~~~~~~~~~~l~i~~~~~~d~   63 (591)
                      ++....|+.|.|.|.... ..-.+..|+++. .-+.          .        .+.++.+..++.++|+|.++.++..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            455678999999999743 445578998753 2221          1        2456677888889999999999999


Q ss_pred             eEEEEEEEcCCeee
Q psy12425         64 GDYTVNLSNSSGSV   77 (591)
Q Consensus        64 g~Y~c~~~n~~g~~   77 (591)
                      |-|+|.+....+..
T Consensus       113 GCYtc~~ks~~~k~  126 (251)
T PHA02982        113 GCFTCEAKDAEGKE  126 (251)
T ss_pred             CceEEEEecCCCch
Confidence            99999998765544

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.73  E-value=0.01  Score=41.93  Aligned_cols=84  Identities=17%  Similarity=0.284  Sum_probs=47.9

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEE---------------CCEEeecC--CceeEEEeCCeEEEEEcccCCCCceE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTK---------------NGRVVQSD--DRFKFTVLDDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~---------------~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~   65 (591)
                      +.+....|+++.|.=.-.-..--.+.|.+               |+......  ..-++........|.|+.+++.|+|.
T Consensus         6 ~~VvgiSG~pl~LrP~~~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~   85 (108)
T PF11465_consen    6 DHVVGISGKPLQLRPSNIQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGL   85 (108)
T ss_dssp             EEEEEETTS-EEE--SS---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EE
T ss_pred             cceEEccCCEEEECCCCccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCce
Confidence            45667778888886221111123455643               22222211  11234444455689999999999999


Q ss_pred             EEEEEEcCCeee-EEEEEEEEe
Q psy12425         66 YTVNLSNSSGSV-SGTFTINIT   86 (591)
Q Consensus        66 Y~c~~~n~~g~~-~~~~~l~v~   86 (591)
                      |...+.+..|.. ...+.|.|.
T Consensus        86 Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   86 YCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EEEEEEETTSCEEEEEEEEEEE
T ss_pred             EEEEEEcCCCcEEEEEEEEEee
Confidence            999999999887 444666664

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG4258|consensus

Probab=96.67  E-value=0.042  Score=54.28  Aligned_cols=77  Identities=21%  Similarity=0.258  Sum_probs=50.9

Q ss_pred             cCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEe--eecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCc
Q psy12425        202 GGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV--AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS  279 (591)
Q Consensus       202 ~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~  279 (591)
                      ..+.+-|+|..|..+++ .+..|.|.++..+...-...-.  .........+..+.++ .|..+++|..-.|.+.+....
T Consensus       841 ~~~~v~l~w~EP~~pNG-li~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~  918 (1025)
T KOG4258|consen  841 EMNSVILRWLEPKEPNG-LILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESV  918 (1025)
T ss_pred             CcceEEEecCCCCCCCc-cEEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCc
Confidence            56789999999987765 7889999999766543222110  1112345566666655 477788888888888765443


Q ss_pred             c
Q psy12425        280 N  280 (591)
Q Consensus       280 ~  280 (591)
                      .
T Consensus       919 ~  919 (1025)
T KOG4258|consen  919 I  919 (1025)
T ss_pred             c
Confidence            3

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.57  E-value=0.019  Score=40.86  Aligned_cols=66  Identities=15%  Similarity=0.214  Sum_probs=40.1

Q ss_pred             ccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEEEeCC---eEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        308 HNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFAEGD---TYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       308 ~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      ..+.+.|.+ .|.|.+.|.|+++...... .......++.   ...|.+.....++...|+|++.+..-..
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~   85 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQE   85 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            457889987 4799999999987221110 0111112222   2256666556666778999999875443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=96.54  E-value=0.5  Score=41.66  Aligned_cols=118  Identities=24%  Similarity=0.351  Sum_probs=72.4

Q ss_pred             CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE-ec------CCCCCCCCCeeeee----cCCeeEEEeeccccCCC
Q psy12425        442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ-IS------DRPDPPQFPTVEDI----GHDSLALVWRAPIWDGG  510 (591)
Q Consensus       442 ~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~-v~------~~p~~p~~~~~~~~----~~~~v~l~W~~p~~~~~  510 (591)
                      .-..+.+.++.+.+.|..+..+.|.... ...+.+. +.      .-|.-|.++.+...    +-++++|.|.+.. +. 
T Consensus       126 ~~~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~-d~-  202 (300)
T PF10179_consen  126 GLRHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSP-DR-  202 (300)
T ss_pred             ceEEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCC-CC-
Confidence            5677889999988888777776765433 3334444 22      23677888877543    4589999999643 21 


Q ss_pred             cceeeEEEEeeeCCCC----------------------ceEEe----c-------eeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        511 SNITNYIVEKREHPMS----------------------SWIRV----G-------NTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       511 ~~~~~y~v~~~~~~~~----------------------~~~~~----~-------~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                       .+ .|=|+.+.....                      .|...    .       .......+|.+|.||+.|.|-|.|.
T Consensus       203 -~~-kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~  280 (300)
T PF10179_consen  203 -SI-KYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVN  280 (300)
T ss_pred             -Cc-eEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEe
Confidence             13 344443322111                      11111    0       1122466899999999999999997


Q ss_pred             cCCcCCC
Q psy12425        558 NVYGRSD  564 (591)
Q Consensus       558 n~~G~~~  564 (591)
                      -..|.+-
T Consensus       281 ~~~G~sl  287 (300)
T PF10179_consen  281 GPSGQSL  287 (300)
T ss_pred             cCCCcee
Confidence            6666543

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.49  E-value=0.027  Score=39.33  Aligned_cols=64  Identities=19%  Similarity=0.338  Sum_probs=42.0

Q ss_pred             CCCeEEEEEeeecc-CCC-eEEEeeCCeEeeeccceEEEe--cCC----eeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        402 KGENVVVKIPFTGY-PKP-KITWYRDNEVIESGGHFHVET--SER----HAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       402 ~g~~~~l~c~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~--~~~----~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      .+..+.|.|.+.+. |.. .|.|+++|..+..........  .+.    .+.|.+.   ..+...|+|.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            48899999999885 433 799999998875433222111  122    2344444   5566689999987644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.45  E-value=0.023  Score=42.16  Aligned_cols=71  Identities=23%  Similarity=0.456  Sum_probs=42.6

Q ss_pred             eeccccEEEEEEEcC-CCC-CeeEEecCCccCCCCCce--EEEEeC-CeE----EEEEcceeccc-ceEEEEEEEeCCcc
Q psy12425        304 AIQNHNAQFQCTITG-CPK-PTISWLKGSREITPSARH--HIFAEG-DTY----TLIINSVYGVD-ADEYVCRAVNKGGV  373 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~-~p~-~~v~W~~~~~~~~~~~~~--~~~~~~-~~~----~l~i~~~~~~d-~g~y~c~a~n~~g~  373 (591)
                      ...+..+.|.|.+.+ +|. ..|.|.+++..+..+...  ....++ +.+    .|.+..-...+ ...|+|.+......
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            445678999999988 454 488999999877643221  111221 233    33333333223 46799999876443


Q ss_pred             e
Q psy12425        374 K  374 (591)
Q Consensus       374 ~  374 (591)
                      .
T Consensus        95 ~   95 (115)
T cd05769          95 D   95 (115)
T ss_pred             c
Confidence            3

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=96.44  E-value=0.17  Score=35.26  Aligned_cols=81  Identities=15%  Similarity=0.199  Sum_probs=52.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |+.+.|..|+++.+.|...-..+..+.|.-.=      .+..+.....-..+.|.+++. | ..-.|.+.-.......+.
T Consensus        10 P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L------~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~   81 (91)
T PF03921_consen   10 PEEPVVPPGGSVWVNCSTSCPQPEKIGLETSL------SKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASA   81 (91)
T ss_dssp             SSEEEEETTEEEEEEEEESSSS-SEEEEESSS------EEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEE
T ss_pred             CCccEECCCCCEEEEEcCCCCCCCcceEEEec------CCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEE
Confidence            78899999999999999864333344553210      112222233456888999987 4 467899987655567789


Q ss_pred             EEEEecCCC
Q psy12425         82 TINITGLPG   90 (591)
Q Consensus        82 ~l~v~~~p~   90 (591)
                      .|+|...|+
T Consensus        82 ~ItVY~~Pe   90 (91)
T PF03921_consen   82 NITVYKPPE   90 (91)
T ss_dssp             EEEEEB--S
T ss_pred             eeEEeCCCC
Confidence            999988774

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.43  E-value=0.011  Score=37.93  Aligned_cols=49  Identities=20%  Similarity=0.390  Sum_probs=35.5

Q ss_pred             cccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       307 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+.|.|.|...    ..|.|++ |..+....         ..+|.+.....+-.|.|.|.+.+
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            35689999652    4699999 44433211         22688888889999999999876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.41  E-value=0.013  Score=42.66  Aligned_cols=68  Identities=16%  Similarity=0.381  Sum_probs=39.8

Q ss_pred             eeccccEEEEEEEcCC-CC-CeeEEecCCccCCCCCceE--EEEe---CCeE----EEEEcceecccceEEEEEEEeCC
Q psy12425        304 AIQNHNAQFQCTITGC-PK-PTISWLKGSREITPSARHH--IFAE---GDTY----TLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~~--~~~~---~~~~----~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      +..+..++|.|.+.|. |. ..+.|.+++..+.......  ...+   ++.+    .|.+..-...+...|+|.+....
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            3456789999999984 43 3679999998765432111  1111   1222    23332222234567999997753

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4367|consensus

Probab=96.34  E-value=0.0049  Score=54.83  Aligned_cols=76  Identities=22%  Similarity=0.338  Sum_probs=63.5

Q ss_pred             ecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCcc
Q psy12425        101 ITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI  178 (591)
Q Consensus       101 ~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~  178 (591)
                      ...+++++.|..|. ..+.+..+|.++..+..+..+..+.. ...+..++.+|..+..|.-||.+.|..|.++.+...
T Consensus       450 t~nns~t~~wkqp~-~~~~~~dg~~leld~g~~g~frevy~-g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl  525 (699)
T KOG4367|consen  450 THNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYV-GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL  525 (699)
T ss_pred             ccCCceEEEeecCC-CCCCCCcceEEEeecCCCCceeEEEe-cCceeEEecceecchhHHHHHHHhhccCCCccccee
Confidence            46789999999766 45678889999999987777776654 477889999999999999999999999998877654

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.27  E-value=0.021  Score=40.92  Aligned_cols=70  Identities=19%  Similarity=0.377  Sum_probs=38.2

Q ss_pred             cceeccccEEEEEEEcCC--C-CCeeEEecCCccCCC-CCceEEEEeCCeE----EEEEcceecccceEEEEEEEeCC
Q psy12425        302 ANAIQNHNAQFQCTITGC--P-KPTISWLKGSREITP-SARHHIFAEGDTY----TLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~--p-~~~v~W~~~~~~~~~-~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      ..+..++.+.|.|.+.|.  | ...+.|.+++..... .........++.+    .|.+..-...+.-.|+|.+.+..
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            335568899999999988  3 346899998643211 1111111112222    22233222223456999998754

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4152|consensus

Probab=96.22  E-value=1.1  Score=42.03  Aligned_cols=119  Identities=19%  Similarity=0.281  Sum_probs=77.2

Q ss_pred             EeccCCCcceeEEEEEEcCCCccceEEEEEe----cCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeC
Q psy12425        448 IRDASNVDTAPYRVVAENDLGMDSAIVKIQI----SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH  523 (591)
Q Consensus       448 i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v----~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~  523 (591)
                      -.++-...+|+|.+.|.|..|....+..+..    -..|.+|+..+++. +-..+.|.|++|...+...|+.|..+..-.
T Consensus       651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k-~~eGi~l~weppt~p~sg~Iieys~ylAi~  729 (830)
T KOG4152|consen  651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKK-TIEGISLVWEPPTKPGSGTIIEYSPYLAII  729 (830)
T ss_pred             ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccc-cccceeecccCCCCCCCcceEEeehhhHhh
Confidence            3456678899999999999988744333322    24567777766653 567899999999877777888888775321


Q ss_pred             C--------CCceEEecee---------eeeEEEEcCcccCceEEEEEEEEcCCcCCCCCC
Q psy12425        524 P--------MSSWIRVGNT---------RFTTMAITGLSPGHQYEFRVYAENVYGRSDPST  567 (591)
Q Consensus       524 ~--------~~~~~~~~~~---------~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~  567 (591)
                      .        +..+.+..-+         .....-+.+...+-...|||.|.|+.|.|+...
T Consensus       730 tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpatq  790 (830)
T KOG4152|consen  730 TQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPATQ  790 (830)
T ss_pred             hhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcceE
Confidence            1        1122222100         111112234555778999999999999987654

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.19  E-value=0.04  Score=39.14  Aligned_cols=68  Identities=15%  Similarity=0.094  Sum_probs=44.8

Q ss_pred             eeeeecCCeEEE-EEEe-ccCCCceEEEEECCEEeecCCceeEEEeCC-----eEEEEEcccCCCCceEEEEEEEcCC
Q psy12425          4 ALYIPEGDNTKV-KIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         4 ~~~v~~G~~~~l-~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      .+.+.+|+.+.+ .|.+ .|.|++.|+|+.+......   .......+     .+.|.+.....+|.-.+.|.+....
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            467889999999 8987 5599999999987332211   11111111     2466676666667779999997653

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.13  E-value=0.055  Score=39.54  Aligned_cols=66  Identities=20%  Similarity=0.207  Sum_probs=43.2

Q ss_pred             cceeccccEEEEEEEcCCCC---CeeEEecCCccC---------------CCCCceEEE--EeCCeEEEEEcceecccce
Q psy12425        302 ANAIQNHNAQFQCTITGCPK---PTISWLKGSREI---------------TPSARHHIF--AEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p~---~~v~W~~~~~~~---------------~~~~~~~~~--~~~~~~~l~i~~~~~~d~g  361 (591)
                      ..+..|..++|+|++.|...   ..+.|.|.....               ....+....  ...+..+|.+.+++.+|++
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa   87 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD   87 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence            34567788999999976433   457787732211               011122222  3334568999999999999


Q ss_pred             EEEEEE
Q psy12425        362 EYVCRA  367 (591)
Q Consensus       362 ~y~c~a  367 (591)
                      .|.|..
T Consensus        88 ~Y~Ca~   93 (115)
T cd05721          88 IYFCKI   93 (115)
T ss_pred             EEEEEe
Confidence            999986

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.12  E-value=0.038  Score=39.51  Aligned_cols=64  Identities=6%  Similarity=0.129  Sum_probs=37.1

Q ss_pred             cCCeEEEEEEecc-CC-CceEEEEECCEEeecCCc-e-eEEEeCCe----EEEEEcccCCCCceEEEEEEEcC
Q psy12425          9 EGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDR-F-KFTVLDDY----IIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         9 ~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~-~-~~~~~~~~----~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      .++.++|.|.+.| .| ...|+|.|||+. ..+.. . .+...++.    +.|.+..-.-...-.|+|.+...
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~   86 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHP   86 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeC
Confidence            4678999999999 44 468899999997 33211 1 11111222    23444332211244699998754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG1480|consensus

Probab=96.11  E-value=0.0038  Score=60.35  Aligned_cols=173  Identities=17%  Similarity=0.204  Sum_probs=95.8

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeC----CeE---EEEEcceecccc---
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEG----DTY---TLIINSVYGVDA---  360 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~---~l~i~~~~~~d~---  360 (591)
                      ..|.++..+.+..+..+..+.|.|.+...+..  ...-++.-+.......+....    ..+   ...|....-++.   
T Consensus        23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i--~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~  100 (909)
T KOG1480|consen   23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQI--RFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGP  100 (909)
T ss_pred             CcceeeecCCccceecCCCccceecCCccccc--ccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCc
Confidence            34667777788888999999999998655443  222222212222211111111    111   122222222221   


Q ss_pred             eEEE--EEEEeCCcceeee-eEEEEecCCcccCCCCcccceeecCCCeEEEEEee-eccCCCeEEEeeCCeEeeeccceE
Q psy12425        361 DEYV--CRAVNKGGVKSTK-AELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVIESGGHFH  436 (591)
Q Consensus       361 g~y~--c~a~n~~g~~~~~-~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~  436 (591)
                      -.|+  |.|....|..... ..+.+.+-......  -.....+..+..+.+.|.. .+.|...+.|++++..+.+.....
T Consensus       101 ~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~--~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~  178 (909)
T KOG1480|consen  101 EDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQ--SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVI  178 (909)
T ss_pred             cceeeeeeeecCCCcchhhhHHHHHHHHHHhhcc--ChhhheecccccccccccCcccchhhhhhccccCCCCCccccch
Confidence            1355  5566666622111 11111110000000  0012335667778888876 688999999999998887744333


Q ss_pred             EEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        437 VETSERHAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       437 ~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      ..   ....+++..+...|.|+|+|+|.|-++..
T Consensus       179 ~~---~d~~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  179 RA---SDHNLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             hh---hcCCccccchhhhhcccceeeeehhhccc
Confidence            32   35678888999999999999999988765

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.98  E-value=0.017  Score=41.29  Aligned_cols=29  Identities=14%  Similarity=0.181  Sum_probs=23.8

Q ss_pred             eecCCeEEEEEEecc-C-C-CceEEEEECCEE
Q psy12425          7 IPEGDNTKVKIFYAG-D-Q-PMEVSLTKNGRV   35 (591)
Q Consensus         7 v~~G~~~~l~C~~~~-~-p-~~~v~W~~~~~~   35 (591)
                      +..++.++|.|.+.| . | ...|.|.++|..
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            447889999999998 4 4 468999999875

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.88  E-value=0.061  Score=38.41  Aligned_cols=66  Identities=12%  Similarity=0.268  Sum_probs=38.9

Q ss_pred             eccccEEEEEEEcC-CC-CCeeEEecCCccCCCCCc-eEEEEeCCeEEE-EEcceeccc-ceEEEEEEEeC
Q psy12425        305 IQNHNAQFQCTITG-CP-KPTISWLKGSREITPSAR-HHIFAEGDTYTL-IINSVYGVD-ADEYVCRAVNK  370 (591)
Q Consensus       305 ~~g~~~~l~c~~~~-~p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~l-~i~~~~~~d-~g~y~c~a~n~  370 (591)
                      ..+..+.|.|.+.| +| ...+.|.++|..+..+.. .....+++.+.+ .-..+.+.+ ...|+|.+...
T Consensus        14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~   84 (96)
T cd07697          14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHE   84 (96)
T ss_pred             ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEEC
Confidence            34567899999988 44 346899999987654322 122233333321 112333432 33499999874

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=95.87  E-value=0.017  Score=42.69  Aligned_cols=84  Identities=24%  Similarity=0.316  Sum_probs=52.5

Q ss_pred             CCCCCeeeeecCCeeEEEeeccccC---CCc--------ceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEE
Q psy12425        484 PPQFPTVEDIGHDSLALVWRAPIWD---GGS--------NITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEF  552 (591)
Q Consensus       484 ~p~~~~~~~~~~~~v~l~W~~p~~~---~~~--------~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~  552 (591)
                      ||. +.+ ....+.+.+.+.+|...   ++.        .-..|.|.+.......-..........+.|.+|.|++.|=+
T Consensus         5 PP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~YCv   82 (106)
T PF09294_consen    5 PPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNYCV   82 (106)
T ss_dssp             SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEEEE
T ss_pred             CCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCEEE
Confidence            444 555 45788999999987510   111        12469999887776633344445556789999999999999


Q ss_pred             EEEEEcCC--cCCCCCCCc
Q psy12425        553 RVYAENVY--GRSDPSTTS  569 (591)
Q Consensus       553 ~v~A~n~~--G~~~~s~~~  569 (591)
                      +|+|....  -.|.+|.+.
T Consensus        83 ~V~~~~~~~~~~s~~S~~~  101 (106)
T PF09294_consen   83 SVQAFSPSQNKNSQPSEPQ  101 (106)
T ss_dssp             EEEEEECSSTEEEEEBSEE
T ss_pred             EEEEEeccCCCcCCCCCCE
Confidence            99993222  235555543

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.86  E-value=0.12  Score=36.99  Aligned_cols=65  Identities=22%  Similarity=0.468  Sum_probs=37.8

Q ss_pred             ccccEEEEEEEcCC-C-CCeeEEecCCccCCCCCc-e-EEEEeCCeEE-EEEcceeccc---ceEEEEEEEeCC
Q psy12425        306 QNHNAQFQCTITGC-P-KPTISWLKGSREITPSAR-H-HIFAEGDTYT-LIINSVYGVD---ADEYVCRAVNKG  371 (591)
Q Consensus       306 ~g~~~~l~c~~~~~-p-~~~v~W~~~~~~~~~~~~-~-~~~~~~~~~~-l~i~~~~~~d---~g~y~c~a~n~~  371 (591)
                      .++.+.|.|.+.|. | ...+.|.++|.. ..+.. . .+..+++.+. .....+.+.+   .-.|+|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            45678999999984 3 357899999887 33211 1 1222133332 1112344443   567999998754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.80  E-value=0.08  Score=37.40  Aligned_cols=67  Identities=15%  Similarity=0.166  Sum_probs=41.1

Q ss_pred             ecCCCeEEEEEeeec-cCC--CeEEEeeCCeEeeeccceEE----EecCCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        400 FDKGENVVVKIPFTG-YPK--PKITWYRDNEVIESGGHFHV----ETSERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       400 ~~~g~~~~l~c~~~~-~p~--~~v~W~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                      +..|..++++|.+.+ .|.  ..+.|+++...+.......-    ........+++.--..++.-.|+|.|.=.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEe
Confidence            467999999999975 444  47999987665543321110    01112345666554444445999999743

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.78  E-value=0.043  Score=39.26  Aligned_cols=70  Identities=13%  Similarity=0.269  Sum_probs=38.7

Q ss_pred             cceeccccEEEEEEEcCCC---CCeeEEecCCccCCCCCceEEEEeCCeE----EEEEcceecccceEEEEEEEeCCc
Q psy12425        302 ANAIQNHNAQFQCTITGCP---KPTISWLKGSREITPSARHHIFAEGDTY----TLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      .....+..++|.|.+.+.-   ...|.|.+++.. ...........++.+    .|.+..-.......|+|.+.+...
T Consensus        14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             HHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            3344678899999998843   357999998765 111111111112222    233332222333569999987543

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03052 Hypothetical protein; Provisional

Probab=95.76  E-value=0.059  Score=34.18  Aligned_cols=36  Identities=17%  Similarity=0.235  Sum_probs=30.5

Q ss_pred             CCceeeeecCCeEEEEEEec-c--CCCceEEEEECCEEe
Q psy12425          1 MPNALYIPEGDNTKVKIFYA-G--DQPMEVSLTKNGRVV   36 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~-~--~p~~~v~W~~~~~~~   36 (591)
                      +|+.+.+..|.+++|.|++. |  ...+.|.|.-|+..+
T Consensus         3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            58899999999999999983 2  335689999999888

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=95.68  E-value=0.11  Score=37.01  Aligned_cols=68  Identities=12%  Similarity=0.237  Sum_probs=42.2

Q ss_pred             ceeccccEEE-EEEE-cCCCCCeeEEecCCccCCCCCceEEEEeCC---eEEEEEcceecccceEEEEEEEeCC
Q psy12425        303 NAIQNHNAQF-QCTI-TGCPKPTISWLKGSREITPSARHHIFAEGD---TYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       303 ~~~~g~~~~l-~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      .+.+|+.+.+ .|.+ .|.|.+.|.|+.+...... .......+|.   ..+|.+......+.-.++|.+.+..
T Consensus        12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             EeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            3567888888 8987 6799999999976333211 0001111121   1245665566667778999998764

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=95.50  E-value=1.8  Score=39.09  Aligned_cols=120  Identities=14%  Similarity=0.114  Sum_probs=74.6

Q ss_pred             ccceeccccEEEEEEEcC---CCCCeeEEecCCccCC-----------------CCCceEEEEe------CCeEEEEEcc
Q psy12425        301 NANAIQNHNAQFQCTITG---CPKPTISWLKGSREIT-----------------PSARHHIFAE------GDTYTLIINS  354 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~---~p~~~v~W~~~~~~~~-----------------~~~~~~~~~~------~~~~~l~i~~  354 (591)
                      .+.+..|..+.|.|...-   ..-....|...+-++.                 ....+.+...      -...+|+|..
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            444566999999999754   2234578876544332                 1122333322      1244899999


Q ss_pred             eecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecC-CCeEEEEEeeecc--CCCeEEEeeCCeEe
Q psy12425        355 VYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDK-GENVVVKIPFTGY--PKPKITWYRDNEVI  429 (591)
Q Consensus       355 ~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~-g~~~~l~c~~~~~--p~~~v~W~~~~~~~  429 (591)
                      +.-+..|.|+|.|....-......-|.|.+.-.+         ....+ .....+.|-+-..  .++.+.|..+|...
T Consensus       353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f---------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~  421 (500)
T PHA02914        353 AHINNAGCYEAQAFMGKFKEECRHCFKVADHVFF---------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSF  421 (500)
T ss_pred             EEEEcCCceEEEEecCcchhhhhhheEeccEEEE---------EEEeccCceEEEEEEEEecccCCceeEEEEccEEe
Confidence            9999999999999887555555566666432110         00112 3455788988654  45579999988654

>PHA03270 envelope glycoprotein C; Provisional

Probab=95.44  E-value=0.99  Score=41.32  Aligned_cols=79  Identities=14%  Similarity=0.206  Sum_probs=60.6

Q ss_pred             eEEEEEcceecccceEEEEEEEeCCcce--eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC---eEE
Q psy12425        347 TYTLIINSVYGVDADEYVCRAVNKGGVK--STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP---KIT  421 (591)
Q Consensus       347 ~~~l~i~~~~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~---~v~  421 (591)
                      ...|.|..++..++|.|+=+..+..+..  ...+.+....+|.+.+.+.     -+..|+...-.|.+..+-++   .+.
T Consensus       181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~-----PvL~Ge~Y~AtC~va~YYPp~Sv~lr  255 (466)
T PHA03270        181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH-----AVLEGEPFGATCVAANYYPGDRAAFR  255 (466)
T ss_pred             cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-----ccccCCCceEEEEeeeecCCCceEEE
Confidence            4579999999999999999977766644  4456666667777665443     24679999999999776544   799


Q ss_pred             EeeCCeEee
Q psy12425        422 WYRDNEVIE  430 (591)
Q Consensus       422 W~~~~~~~~  430 (591)
                      |+.|+..+.
T Consensus       256 Wf~ng~~V~  264 (466)
T PHA03270        256 WFEGGDEVF  264 (466)
T ss_pred             EEeCCcccc
Confidence            999999885

>KOG4597|consensus

Probab=95.35  E-value=0.022  Score=51.84  Aligned_cols=86  Identities=16%  Similarity=0.137  Sum_probs=63.7

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEE---CCEEeecCCc--eeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTK---NGRVVQSDDR--FKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~---~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      |..-.|..|++.+++|-+.|.+.+.|.|.+   |+..+.....  +.-........|.|-+....|+|.|+|.+.+..|.
T Consensus       203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~  282 (560)
T KOG4597|consen  203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF  282 (560)
T ss_pred             cchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence            445568899999999999999999999965   3433322211  11001123468999999999999999999999999


Q ss_pred             eEEEEEEEEec
Q psy12425         77 VSGTFTINITG   87 (591)
Q Consensus        77 ~~~~~~l~v~~   87 (591)
                      ....+.+.+..
T Consensus       283 ~~rdv~c~s~~  293 (560)
T KOG4597|consen  283 LRRDVPCSSVK  293 (560)
T ss_pred             eeccceeeeec
Confidence            98888777654

>PHA02633 hypothetical protein; Provisional

Probab=95.13  E-value=0.081  Score=33.16  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=32.0

Q ss_pred             EEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCc
Q psy12425        349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK  387 (591)
Q Consensus       349 ~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~  387 (591)
                      .|-|.++...|+|.|.|...|..-....+..+.|.....
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~   57 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIE   57 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeeccc
Confidence            588899999999999999998777777777777765443

>PHA03042 CD47-like protein; Provisional

Probab=95.04  E-value=0.14  Score=43.32  Aligned_cols=70  Identities=11%  Similarity=0.114  Sum_probs=47.0

Q ss_pred             CCeEEEEEEeccC-----CCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425         10 GDNTKVKIFYAGD-----QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN   84 (591)
Q Consensus        10 G~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~   84 (591)
                      .+++.+.|.+..-     ....+.|..+++.+...++.      +..+|.+... .+-.|+|+|.|.+........+++.
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk  103 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQ  103 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEecc-ccCCCceeEEEeecccCccEEEEEE
Confidence            6889999999642     35679999999987554332      2246666433 3458999999987765555555544


Q ss_pred             Ee
Q psy12425         85 IT   86 (591)
Q Consensus        85 v~   86 (591)
                      -.
T Consensus       104 ~~  105 (286)
T PHA03042        104 YV  105 (286)
T ss_pred             EE
Confidence            43

>KOG1480|consensus

Probab=95.04  E-value=0.01  Score=57.52  Aligned_cols=80  Identities=23%  Similarity=0.250  Sum_probs=60.1

Q ss_pred             eeeeecCCeEEEEEEe-ccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EEEE
Q psy12425          4 ALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTF   81 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~~~   81 (591)
                      --.|.++..+.+.|+. .+.|...+.|+|++..+....+.....   -+.+.|..+...|.|+|+|.|.|..+.. ...+
T Consensus       138 ~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~---d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~  214 (909)
T KOG1480|consen  138 GQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS---DHNLIISQARLSDSGNYTCEATNIVAKRKSDPA  214 (909)
T ss_pred             hheecccccccccccCcccchhhhhhccccCCCCCccccchhhh---cCCccccchhhhhcccceeeeehhhccccccce
Confidence            3468889999999986 668999999999998887743333222   2368899999999999999999987765 2334


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .+.+.
T Consensus       215 ~v~vy  219 (909)
T KOG1480|consen  215 TVQVY  219 (909)
T ss_pred             EEEEE
Confidence            44443

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=94.60  E-value=0.24  Score=34.69  Aligned_cols=68  Identities=12%  Similarity=0.221  Sum_probs=47.0

Q ss_pred             CceeeeecCCeEEEEEEecc-----CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      |....|..|.+|+..|.+..     .....+.|..|+..++.+ +++.. .+..+.++|.++....+-.|-|...
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~i-n~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVI-NDTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEE-STTEEEEEESS--SSEEEEEEEEEC
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-Hccee-CCeEEEEEEccCCCCCceEEEEEEc
Confidence            67788999999999999953     246689999999966555 33332 3334788899888877777888743

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03271 envelope glycoprotein C; Provisional

Probab=94.44  E-value=3.9  Score=37.43  Aligned_cols=129  Identities=10%  Similarity=0.074  Sum_probs=74.0

Q ss_pred             CCCceEEEEeC--CeEEEEEcceecccceEEEEEEEeCCcce--eeeeEEEEec-CCcccCCCCcccceeecCCCeEEEE
Q psy12425        335 PSARHHIFAEG--DTYTLIINSVYGVDADEYVCRAVNKGGVK--STKAELIIMT-APKFNVPPRFRDTAYFDKGENVVVK  409 (591)
Q Consensus       335 ~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~-~p~~~~~~~~~~~~~~~~g~~~~l~  409 (591)
                      .+++|.+-.+.  ....+.|.++...++|.|+....+.....  .....+.+.+ +|.+...+.     -+..|+...-.
T Consensus       192 ~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~-----PVL~Ge~YkAt  266 (490)
T PHA03271        192 HGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP-----PVLSGENYKAS  266 (490)
T ss_pred             CCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC-----ccccCCCceEE
Confidence            34455443332  23478999999999998866665544433  3344444444 443443332     24679999999


Q ss_pred             EeeeccCCC---eEEEeeCCeEeeeccceEEEe---cC-----CeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        410 IPFTGYPKP---KITWYRDNEVIESGGHFHVET---SE-----RHAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       410 c~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~---~~-----~~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      |.+..+-+|   .+.|++||.............   .+     ..+.+++.+...+..=..+|.+.=..+
T Consensus       267 C~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd  336 (490)
T PHA03271        267 CIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG  336 (490)
T ss_pred             EEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence            999876554   699999998775432211111   11     123333333322233378999864444

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=94.35  E-value=0.19  Score=37.74  Aligned_cols=78  Identities=13%  Similarity=0.125  Sum_probs=44.8

Q ss_pred             cCCCeEEEEEeeecc-----CCCeEEEeeCCeEeeecc--ceE----------E-EecCCeeEEEEeccCCCcceeEEEE
Q psy12425        401 DKGENVVVKIPFTGY-----PKPKITWYRDNEVIESGG--HFH----------V-ETSERHAILTIRDASNVDTAPYRVV  462 (591)
Q Consensus       401 ~~g~~~~l~c~~~~~-----p~~~v~W~~~~~~~~~~~--~~~----------~-~~~~~~~~l~i~~~~~~~~g~y~c~  462 (591)
                      .=.+++.|.|.+...     +.-.|.|.++|..+-.-+  ...          + ....+..+|.+...+.- .|.|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            447889999998642     234699999887663211  111          1 01123455777764443 7999999


Q ss_pred             EEcCCCccceEEEEEec
Q psy12425        463 AENDLGMDSAIVKIQIS  479 (591)
Q Consensus       463 a~n~~g~~~~~~~~~v~  479 (591)
                      +..........+.|...
T Consensus       104 Vt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  104 VTELSREGETTIELKYR  120 (130)
T ss_dssp             EEETTEEEEEEEEEEE-
T ss_pred             EEecCCCceEEEEEEEE
Confidence            99887777777777663

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.32  E-value=1.1  Score=30.66  Aligned_cols=64  Identities=11%  Similarity=0.099  Sum_probs=39.8

Q ss_pred             EEEEEEeccCC-------CceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEE-EcCCeeeEEEEEEE
Q psy12425         13 TKVKIFYAGDQ-------PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNL-SNSSGSVSGTFTIN   84 (591)
Q Consensus        13 ~~l~C~~~~~p-------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~-~n~~g~~~~~~~l~   84 (591)
                      -.|.|...+--       .+.+.|+-.+..+.....          .+....+...|+|.+.|.| .+..-.....+.|.
T Consensus         8 ~~l~~e~L~~tl~~~~~~~~~~~l~~~~~k~~~~~~----------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~   77 (80)
T PF05790_consen    8 NVLPCEVLELTLEKPPGMKPSLFLENPGKKSLETKK----------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL   77 (80)
T ss_dssp             CEEEEEEESECEEETTTECEEEEEECSSCEEEEESS----------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred             CEeeeeeEEEEEcCCCCCChhheeeccCccccccce----------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence            45667664422       456777766554433322          4456677889999999999 55555555656665


Q ss_pred             Ee
Q psy12425         85 IT   86 (591)
Q Consensus        85 v~   86 (591)
                      |.
T Consensus        78 v~   79 (80)
T PF05790_consen   78 VL   79 (80)
T ss_dssp             EE
T ss_pred             cC
Confidence            53

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.22  E-value=0.069  Score=45.01  Aligned_cols=47  Identities=19%  Similarity=0.255  Sum_probs=37.1

Q ss_pred             CCceEEEEEC-CEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEc
Q psy12425         23 QPMEVSLTKN-GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus        23 p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      ..|.+.|... |+.+....+.+++..|   .|.+.+..+.++|.|+|...-
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEE
Confidence            4689999864 6667666666666444   699999999999999999753

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG4597|consensus

Probab=94.01  E-value=0.22  Score=45.74  Aligned_cols=92  Identities=12%  Similarity=0.116  Sum_probs=65.7

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEec---CCccCCCCCceEEE--EeCCeEEEEEcceecccceEEEEEE
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK---GSREITPSARHHIF--AEGDTYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~---~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      +.+..-+....+..+++..++|-+.|.+.+.|.|.+   +...+.......+.  .-.....|.|-+....|+|-|+|.|
T Consensus       197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~  276 (560)
T KOG4597|consen  197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA  276 (560)
T ss_pred             cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence            455555566678889999999999999999999976   22222111111110  1112336899999999999999999


Q ss_pred             EeCCcceeeeeEEEEec
Q psy12425        368 VNKGGVKSTKAELIIMT  384 (591)
Q Consensus       368 ~n~~g~~~~~~~l~v~~  384 (591)
                      .+..|.....+.+.+..
T Consensus       277 rcg~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  277 RCGAGFLRRDVPCSSVK  293 (560)
T ss_pred             ccccceeeccceeeeec
Confidence            99999988887777653

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=93.53  E-value=1.3  Score=39.27  Aligned_cols=115  Identities=11%  Similarity=-0.061  Sum_probs=76.8

Q ss_pred             eccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCC---CCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC
Q psy12425        449 RDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ---FPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM  525 (591)
Q Consensus       449 ~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~---~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~  525 (591)
                      .++.+...+.|.+.+.+..+.-+.++...-..+-..|.   .+++...-.+.+.|+|..+..     +..|+++......
T Consensus       129 s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~-----~~yy~IY~~~~g~  203 (343)
T COG3401         129 SDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEA-----EDYYRIYASDSGN  203 (343)
T ss_pred             cccccccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCccc-----cceEEEeccCCcc
Confidence            35667777889999988877766664443333323333   333444567789999986532     2378988877776


Q ss_pred             CceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcC-CCCCCC
Q psy12425        526 SSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR-SDPSTT  568 (591)
Q Consensus       526 ~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~-~~~s~~  568 (591)
                      ...........+.+...-...|..|.|.|.+....|. +..+.+
T Consensus       204 e~~~~ia~t~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~  247 (343)
T COG3401         204 EEYGFIAQTTENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNE  247 (343)
T ss_pred             ccccceeeccccchhhhhhccCceeEEEEEEEcCCcceeccCCc
Confidence            6666666666667766666669999999999886554 555443

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=93.21  E-value=0.17  Score=42.78  Aligned_cols=48  Identities=19%  Similarity=0.358  Sum_probs=38.2

Q ss_pred             CCCeeEEecC-CccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        320 PKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       320 p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      ..|.+.|..+ +..+.......+...|   .|.+.+....++|.|+|..+..
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence            3678999875 5556666677777777   6999999999999999998654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03273 envelope glycoprotein C; Provisional

Probab=93.10  E-value=7.7  Score=36.33  Aligned_cols=78  Identities=26%  Similarity=0.341  Sum_probs=58.0

Q ss_pred             EEEEEcceecccceEEEEEEEeCCccee--eeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC---eEEE
Q psy12425        348 YTLIINSVYGVDADEYVCRAVNKGGVKS--TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP---KITW  422 (591)
Q Consensus       348 ~~l~i~~~~~~d~g~y~c~a~n~~g~~~--~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~---~v~W  422 (591)
                      ..|+|..+...++|.|+=+..+..|...  ..+.+....+|.+.+.+.     -+..|+...-.|.+..+-++   .+.|
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~-----PvL~Ge~y~A~C~aa~YYPp~Sv~~rW  272 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH-----PSLKGENYRAVCVVASYFPHSSVKLRW  272 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-----ccccCCCceEEEEeeeecCCCceEEEE
Confidence            4699999999999999877656555443  444455566777665443     24679999999999776544   7999


Q ss_pred             eeCCeEee
Q psy12425        423 YRDNEVIE  430 (591)
Q Consensus       423 ~~~~~~~~  430 (591)
                      +.||.++.
T Consensus       273 f~dg~~V~  280 (486)
T PHA03273        273 YKNAKEVD  280 (486)
T ss_pred             EeCCeecc
Confidence            99999887

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=93.09  E-value=4.1  Score=41.16  Aligned_cols=128  Identities=16%  Similarity=0.128  Sum_probs=72.0

Q ss_pred             cCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceE
Q psy12425        143 CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ  222 (591)
Q Consensus       143 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~  222 (591)
                      .....+.+.++.+ ..|..+++|.|..|....-..+.......+..+|..+..+..... .-.+.+.|..|.  ..-.+.
T Consensus       657 t~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~i-t~~~~l~v~dPt--~~~d~~  732 (952)
T COG4733         657 TSAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVII-TLVIRLVVGDPT--GAVDIT  732 (952)
T ss_pred             ccccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEE-EeeeeEEEecCC--cceEEe
Confidence            3566788899877 679999999999988666554455555565556555555433322 223677887653  111111


Q ss_pred             EEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425        223 GYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSL  274 (591)
Q Consensus       223 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~  274 (591)
                      .-.+.+....................+.-.++.++..+.|+.++.|..|...
T Consensus       733 ~sei~~s~~~d~~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~  784 (952)
T COG4733         733 STEIRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNND  784 (952)
T ss_pred             eeeeeeeccccchhHHhhhhccccccccccCcCCCceEEEEeeecccccccc
Confidence            1111111111111000000001112233368899999999999999988654

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=92.93  E-value=6.5  Score=35.03  Aligned_cols=166  Identities=13%  Similarity=0.133  Sum_probs=81.8

Q ss_pred             CCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE-EEEEEec---CCCCCC----CCcceEEecCc--eEEEEecCCCCCC
Q psy12425         48 DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT-FTINITG---LPGPPI----GPLDVSEITKH--TCTLHWNPPKYDG  117 (591)
Q Consensus        48 ~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~-~~l~v~~---~p~~p~----~~~~~~~~~~~--~~~l~w~~p~~~~  117 (591)
                      +....++|.++.++..|.+.+.+.|.....+.. .-..+..   ....+.    +.+......+.  .-..+...|....
T Consensus        12 g~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~~   91 (300)
T PF10179_consen   12 GQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRSS   91 (300)
T ss_pred             CCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCCC
Confidence            344578899999999999999998875333222 1111111   111111    11111112111  1233444342111


Q ss_pred             CcceeeEEEEEEecC-------CCc-eEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCC
Q psy12425        118 GLKVTHYVVERRDIS-------MPH-WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDK  189 (591)
Q Consensus       118 ~~~~~~y~~~~~~~~-------~~~-~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~  189 (591)
                      ...-..+.+.-+...       ... -........-..+.+.++.++..|.+++.+.+..............+.......
T Consensus        92 ~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e~~~~~kV~aast~~~~~~~  171 (300)
T PF10179_consen   92 THQSLWLFVQSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDEGPSTFKVQAASTNPSKQPY  171 (300)
T ss_pred             CCccEEEEEEeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCCCceEEEEEEecCCcccCCC
Confidence            111122222222110       000 000011223456889999999999999987765433222222112222333456


Q ss_pred             CCCCCCCeEEeec--C--CeEEEEEecC
Q psy12425        190 PSPPGIPVVTQVG--G--DFVNLSWDKP  213 (591)
Q Consensus       190 p~~~~~~~~~~~~--~--~~v~l~w~~~  213 (591)
                      |..|.++.+....  -  ++++|.|...
T Consensus       172 P~LP~d~~Ik~f~~lrtC~SvTIAW~~s  199 (300)
T PF10179_consen  172 PQLPDDTSIKEFNKLRTCNSVTIAWLGS  199 (300)
T ss_pred             CCCCCCCceeEEcCCcccceEEEEEecC
Confidence            7777777765544  3  6899999974

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=92.82  E-value=0.39  Score=31.52  Aligned_cols=39  Identities=28%  Similarity=0.574  Sum_probs=27.6

Q ss_pred             CCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425        525 MSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP  565 (591)
Q Consensus       525 ~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~  565 (591)
                      ...|........ .+.+.+|.||+ |+|.|+|.|..|.-..
T Consensus        18 d~~W~~~~~~~~-~~~~~~L~~G~-Y~l~V~a~~~~~~~~~   56 (66)
T PF07495_consen   18 DDEWITLGSYSN-SISYTNLPPGK-YTLEVRAKDNNGKWSS   56 (66)
T ss_dssp             ESSEEEESSTS--EEEEES--SEE-EEEEEEEEETTS-B-S
T ss_pred             CCeEEECCCCcE-EEEEEeCCCEE-EEEEEEEECCCCCcCc
Confidence            377888755443 88889999995 9999999999986544

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=92.70  E-value=1.8  Score=39.10  Aligned_cols=108  Identities=16%  Similarity=0.274  Sum_probs=67.3

Q ss_pred             ceeeeecCCeEEEEEEecc--C-CCceEEEEECCEEee-----------------cCCceeEEEeC------CeEEEEEc
Q psy12425          3 NALYIPEGDNTKVKIFYAG--D-QPMEVSLTKNGRVVQ-----------------SDDRFKFTVLD------DYIIIFIK   56 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~--~-p~~~v~W~~~~~~~~-----------------~~~~~~~~~~~------~~~~l~i~   56 (591)
                      +.+.+..|.+|.|.|.+.-  + .-....|.--|.++.                 .++.+.+....      ..++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            3567888999999999854  2 334678977654332                 12333443331      13789999


Q ss_pred             ccCCCCceEEEEEEEcCCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEE
Q psy12425         57 EIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER  128 (591)
Q Consensus        57 ~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~  128 (591)
                      .+..+..|-|.|.|....-......-+.|.                 ..+-+.|.... ++-..+..|...+
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~-----------------d~V~f~W~~e~-~n~T~V~Cyv~sy  405 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVA-----------------DHVFFKWNTEG-DNETKVACYAAQY  405 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEec-----------------cEEEEEEEecc-CceEEEEEEEEec
Confidence            999999999999997664443433334443                 35667776332 2333455565555

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=92.64  E-value=0.86  Score=32.60  Aligned_cols=71  Identities=20%  Similarity=0.304  Sum_probs=44.7

Q ss_pred             eEEEEEeeeccCCCe--EEEeeCCeEeee---ccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEEE
Q psy12425        405 NVVVKIPFTGYPKPK--ITWYRDNEVIES---GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQ  477 (591)
Q Consensus       405 ~~~l~c~~~~~p~~~--v~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~  477 (591)
                      .+.+.-...+.+...  ++|..+......   ++++.+  ......|.|+.+++.|+|.|..++.+..|.. ...+.+.
T Consensus        29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F--~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs  105 (108)
T PF11465_consen   29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNF--TSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS  105 (108)
T ss_dssp             EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEE--ETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred             EEEEEEEcccCCceEEEEEEcCCCcccccccccceEee--eccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence            456666655555554  666554433322   223333  3457899999999999999999999999987 3344443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG4152|consensus

Probab=92.44  E-value=1.1  Score=42.06  Aligned_cols=121  Identities=26%  Similarity=0.406  Sum_probs=69.0

Q ss_pred             cCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeee
Q psy12425        151 QGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHE  230 (591)
Q Consensus       151 ~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~  230 (591)
                      ..|-.++.|.|+|.|.|..|.+..+......+..  ...|..|....+. ..-.-+.+.|.+|..++...|..|.....-
T Consensus       652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~--pG~P~apS~~ri~-k~~eGi~l~weppt~p~sg~Iieys~ylAi  728 (830)
T KOG4152|consen  652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCA--PGKPTAPSGARIK-KTIEGISLVWEPPTKPGSGTIIEYSPYLAI  728 (830)
T ss_pred             cccccccceeeeeeeeeccCCCchhhheeeeecc--CCCCCCccccccc-ccccceeecccCCCCCCCcceEEeehhhHh
Confidence            4577899999999999999999888766554431  2233333333222 223458899999988876677777543211


Q ss_pred             c------C--CCccEEEEeeec-----CCc--eeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425        231 V------G--SDAWQRVNVAIC-----APS--QINIPNLIEGRQYEFRVYAQNEAGLSL  274 (591)
Q Consensus       231 ~------~--~~~~~~~~~~~~-----~~~--~~~i~~l~~~~~~~y~c~a~n~~g~~~  274 (591)
                      .      +  ...+.+.--...     ...  .-.+.+....-...|++.|.|..|.+.
T Consensus       729 ~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGp  787 (830)
T KOG4152|consen  729 ITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGP  787 (830)
T ss_pred             hhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCc
Confidence            1      0  111111110000     011  112334445667888888888877553

>PHA03042 CD47-like protein; Provisional

Probab=92.30  E-value=1.4  Score=37.64  Aligned_cols=70  Identities=16%  Similarity=0.184  Sum_probs=45.2

Q ss_pred             CCCeEEEEEeeecc-----CCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        402 KGENVVVKIPFTGY-----PKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       402 ~g~~~~l~c~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      =.+++.+.|.++.-     ..-.+.|..++..+-..+      ..+.++|.+..-. .-.|+|+|+|.+..-.....+.+
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n------~tn~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~IeL  102 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKN------NTNTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIEL  102 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEec------CCcceEEEEeccc-cCCCceeEEEeecccCccEEEEE
Confidence            36778899988653     455799999987764221      1133556654333 34799999999876655555555


Q ss_pred             Ee
Q psy12425        477 QI  478 (591)
Q Consensus       477 ~v  478 (591)
                      ..
T Consensus       103 k~  104 (286)
T PHA03042        103 QY  104 (286)
T ss_pred             EE
Confidence            44

>KOG1026|consensus

Probab=92.02  E-value=0.4  Score=48.08  Aligned_cols=163  Identities=15%  Similarity=0.205  Sum_probs=99.8

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL  380 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l  380 (591)
                      ...+..+..+.+.|...+.|.+...|+...............-..  ....+        ..+.|.+.|..|.....+.+
T Consensus       201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~--~~~~~--------~~~~c~~E~~~~~~~~~v~~  270 (774)
T KOG1026|consen  201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRS--ECEVL--------ENDLCIAENAVARSNPSILL  270 (774)
T ss_pred             hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccc--cceee--------echhhHHHHhhhhcCceeee
Confidence            345678899999999999999999999876555432221111110  01111        12899999999999888888


Q ss_pred             EEecCCcccCCCCcccceeecCCCeEEEEEee---eccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcce
Q psy12425        381 IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF---TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTA  457 (591)
Q Consensus       381 ~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g  457 (591)
                      .+..++....+......         .-.|..   .+.|.+...|..++..+........+..+...-+........+.|
T Consensus       271 ~~~~p~~~~~~~~~~~~---------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~  341 (774)
T KOG1026|consen  271 VVDLPKAEVLLCSPLSD---------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNG  341 (774)
T ss_pred             EEecccccccCCCCccc---------cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccC
Confidence            88776544332221110         222332   367778889988876654322221111111122333333567789


Q ss_pred             eEEEEEEcCCCccceEEEEEecCCC
Q psy12425        458 PYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       458 ~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      .|.|.+.+..|.........+...|
T Consensus       342 ~~~~~~e~~~g~~~~r~~g~~~~~P  366 (774)
T KOG1026|consen  342 NYTLFPELPGGKNYCRNPGGFMSRP  366 (774)
T ss_pred             cceeeecccCccccccCcCccccCC
Confidence            9999999999988776666666655

>PHA03189 UL14 tegument protein; Provisional

Probab=91.91  E-value=1.7  Score=37.72  Aligned_cols=75  Identities=21%  Similarity=0.414  Sum_probs=43.9

Q ss_pred             CceeeeecCCeEEEEEEeccC--CCceEE-----EEE----------CCEEeecC-------CceeEEEeCCe--EEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD--QPMEVS-----LTK----------NGRVVQSD-------DRFKFTVLDDY--IIIFI   55 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~--p~~~v~-----W~~----------~~~~~~~~-------~~~~~~~~~~~--~~l~i   55 (591)
                      |.++.+..|+.+++.|.+-..  |-..|.     |.-          .|..+...       .+.+++..+-.  .+|++
T Consensus        59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF  138 (348)
T PHA03189         59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF  138 (348)
T ss_pred             CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence            678889999999999998543  333322     211          12222222       12223322222  34444


Q ss_pred             cccCCCCceEEEEEEEcCCeee
Q psy12425         56 KEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus        56 ~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                       ++..+.+|.|.|...|.....
T Consensus       139 -~v~t~taG~Y~CvLrN~tHgl  159 (348)
T PHA03189        139 -RVSTSTAGMYECVLRNETHGL  159 (348)
T ss_pred             -EEEecccceEEEEecccccee
Confidence             566788999999999875443

>PLN02533 probable purple acid phosphatase

Probab=91.54  E-value=1.9  Score=41.39  Aligned_cols=69  Identities=14%  Similarity=0.179  Sum_probs=42.5

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec-------------eeeeeEEEEcCcccC
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG-------------NTRFTTMAITGLSPG  547 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~-------------~~~~~~~~i~~l~~~  547 (591)
                      .+..|..+.+.-.+.+++.|+|....  ...+.    |.|....+..+....             .+......|.+|.|+
T Consensus        40 ~~~~P~qvhls~~~~~~m~V~W~T~~--~~~~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~  113 (427)
T PLN02533         40 DPTHPDQVHISLVGPDKMRISWITQD--SIPPS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPN  113 (427)
T ss_pred             CCCCCceEEEEEcCCCeEEEEEECCC--CCCCE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCC
Confidence            45677888877667889999998642  11122    334332222111111             122346789999999


Q ss_pred             ceEEEEEE
Q psy12425        548 HQYEFRVY  555 (591)
Q Consensus       548 ~~Y~~~v~  555 (591)
                      +.|.|+|-
T Consensus       114 T~Y~Yrvg  121 (427)
T PLN02533        114 TVYYYKCG  121 (427)
T ss_pred             CEEEEEEC
Confidence            99999993

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=91.34  E-value=1.8  Score=31.54  Aligned_cols=79  Identities=18%  Similarity=0.248  Sum_probs=53.5

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec-----eee---eeEEEEc--CcccCceE
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG-----NTR---FTTMAIT--GLSPGHQY  550 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~-----~~~---~~~~~i~--~l~~~~~Y  550 (591)
                      +|..|..+.........++--|++.. +++.+ ..|.+.|.... ..|+...     ...   .....+.  +..--..|
T Consensus         7 ~p~~P~~~~C~S~~~etftC~W~~g~-~~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y   83 (104)
T PF09067_consen    7 PPEKPENLKCFSREMETFTCFWEPGS-EGNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY   83 (104)
T ss_dssp             HCCCCEEEEEEBSSSS-EEEEEEEES-SSTST-CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred             CCCCCccCccCCCCCCcEEEEeeCCC-CCCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence            56777777777777788999999654 33323 33999998776 6676542     111   1224444  77888999


Q ss_pred             EEEEEEEcCCcC
Q psy12425        551 EFRVYAENVYGR  562 (591)
Q Consensus       551 ~~~v~A~n~~G~  562 (591)
                      .++|.|.|..|.
T Consensus        84 ~i~V~a~~~~~~   95 (104)
T PF09067_consen   84 CIQVEATNALGS   95 (104)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEeccCCCc
Confidence            999999999984

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>PHA03269 envelope glycoprotein C; Provisional

Probab=90.90  E-value=15  Score=34.81  Aligned_cols=79  Identities=15%  Similarity=0.251  Sum_probs=58.0

Q ss_pred             EEEEEcceecccceEEEEEEEeC-Cc--ceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC---eEE
Q psy12425        348 YTLIINSVYGVDADEYVCRAVNK-GG--VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP---KIT  421 (591)
Q Consensus       348 ~~l~i~~~~~~d~g~y~c~a~n~-~g--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~---~v~  421 (591)
                      ..|.|..+...++|.|+=+..+. .+  .....+.+.+..+|.+...+.     -+..|+...-.|.+..+-++   .+.
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~-----PVL~Ge~YkAtC~vA~YYPp~Svrlr  363 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD-----PVLLGNPYAAYCKVNKYYPPHSVIVK  363 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC-----ccccCCCceEEEEeeeecCCCceEEE
Confidence            36999999999999998665432 22  334556777777787665443     24679999999999876544   799


Q ss_pred             EeeCCeEeee
Q psy12425        422 WYRDNEVIES  431 (591)
Q Consensus       422 W~~~~~~~~~  431 (591)
                      |+.|+.++..
T Consensus       364 Wf~ng~~V~~  373 (566)
T PHA03269        364 WTSNFGNIGK  373 (566)
T ss_pred             EEeCCcccCc
Confidence            9999988864

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=90.35  E-value=0.2  Score=48.68  Aligned_cols=212  Identities=11%  Similarity=0.111  Sum_probs=0.0

Q ss_pred             EEEE--cceecccceEEEEEEEeCCc-ceeeeeEEEEec--CCcccCCCCcccceeecCCCeEEEEEeeec----cCCCe
Q psy12425        349 TLII--NSVYGVDADEYVCRAVNKGG-VKSTKAELIIMT--APKFNVPPRFRDTAYFDKGENVVVKIPFTG----YPKPK  419 (591)
Q Consensus       349 ~l~i--~~~~~~d~g~y~c~a~n~~g-~~~~~~~l~v~~--~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~----~p~~~  419 (591)
                      .+.|  ..+.+...+.|+..+....+ .......+.+..  +|.+.+.........+..++.+.|...+.+    .....
T Consensus       149 ~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~  228 (440)
T PF02010_consen  149 SLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVS  228 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEE
Confidence            4555  45566666666666666554 223334444432  233322221111122566777777655543    23457


Q ss_pred             EEEeeC--------CeEeeeccceEEEecCCeeEEEEe--ccCCCcceeEEEEEEcCCCcc-ceEEEEEecCCCCCCCCC
Q psy12425        420 ITWYRD--------NEVIESGGHFHVETSERHAILTIR--DASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFP  488 (591)
Q Consensus       420 v~W~~~--------~~~~~~~~~~~~~~~~~~~~l~i~--~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p~~p~~~  488 (591)
                      +.|...        ...+... ............|.|.  .+.+...|.+++.+.+..+.. ...+.+.+..+|..-. .
T Consensus       229 y~Wsl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~g~-c  306 (440)
T PF02010_consen  229 YSWSLFSLDGVSDSNSELPDW-SSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSGGS-C  306 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEeecccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            888770        0011000 0111112235566665  356666777888888876664 5666677766663221 2


Q ss_pred             eeee----ecCCeeEEEeeccccCCCcceeeEEEEe-eeCCCCceEEeceeeeeE---EEEcCcccCc--eEEEEEEEEc
Q psy12425        489 TVED----IGHDSLALVWRAPIWDGGSNITNYIVEK-REHPMSSWIRVGNTRFTT---MAITGLSPGH--QYEFRVYAEN  558 (591)
Q Consensus       489 ~~~~----~~~~~v~l~W~~p~~~~~~~~~~y~v~~-~~~~~~~~~~~~~~~~~~---~~i~~l~~~~--~Y~~~v~A~n  558 (591)
                      .+..    .-.+.+++.|.--.++.  ..+.|.+.+ .......|.....+....   +.|.--..+.  .-.+.|.+.+
T Consensus       307 ~v~P~~G~al~T~Ft~~c~~~~d~~--~pL~Y~f~~~~~~~~~~~~~L~~~~~~~~~~~~LP~g~~~~~~~~~i~v~V~D  384 (440)
T PF02010_consen  307 SVSPSSGYALETTFTITCSGWTDDD--QPLTYQFYYSSDDGSGSWNLLYEGSSPSSISTYLPPGDENNDYNVTIYVQVCD  384 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2221    12345666665322122  256788887 333444555443222222   2332222223  4456667788


Q ss_pred             CCcCCC
Q psy12425        559 VYGRSD  564 (591)
Q Consensus       559 ~~G~~~  564 (591)
                      ..|...
T Consensus       385 ~~ga~~  390 (440)
T PF02010_consen  385 SLGACS  390 (440)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            888655

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=90.18  E-value=0.75  Score=44.78  Aligned_cols=152  Identities=13%  Similarity=0.070  Sum_probs=26.8

Q ss_pred             eEEEEEEeccCCCceEEEEECCE----EeecCCceeEEEeCCeEEEEEcccCC-CCceEEEEEEE--cCC-eeeEEEEEE
Q psy12425         12 NTKVKIFYAGDQPMEVSLTKNGR----VVQSDDRFKFTVLDDYIIIFIKEIRK-EDAGDYTVNLS--NSS-GSVSGTFTI   83 (591)
Q Consensus        12 ~~~l~C~~~~~p~~~v~W~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~c~~~--n~~-g~~~~~~~l   83 (591)
                      .+.|.|..  .-...+.|..-..    .......     ..+...|.|..-.. ...+.|.+.+.  +.. ......+.|
T Consensus         2 ~~~~~C~~--~~~~~y~W~~~~~~~~~~~~~~~~-----~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v   74 (440)
T PF02010_consen    2 HVSLNCND--ASTVTYNWTVFSGPSNSIVQDMDN-----SSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTV   74 (440)
T ss_dssp             ----------------BEEEEES-TT-EEESTTT-------SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEE
T ss_pred             Cccccccc--ccceEEEEEEEecCCcCccccccc-----cCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEE
Confidence            46778933  3456889976321    1111111     11234677776554 44677788777  222 233555777


Q ss_pred             EEecCCCCCCCCc--ceEEecCceEEEEecCCCCCCCc---ceeeEEEEEEecCCC--c----eEEEEeecCcceEEE--
Q psy12425         84 NITGLPGPPIGPL--DVSEITKHTCTLHWNPPKYDGGL---KVTHYVVERRDISMP--H----WICISTTCHDTTFIV--  150 (591)
Q Consensus        84 ~v~~~p~~p~~~~--~~~~~~~~~~~l~w~~p~~~~~~---~~~~y~~~~~~~~~~--~----~~~~~~~~~~~~~~i--  150 (591)
                      .|...|..+...-  .........+.|......+++..   ....|.+........  .    -...........+.+  
T Consensus        75 ~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~  154 (440)
T PF02010_consen   75 TVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPA  154 (440)
T ss_dssp             EEE-----------------------------------------------------------------------------
T ss_pred             EEeeccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEh
Confidence            7776544333210  00111123445443221111111   223455544433222  0    000011223344555  


Q ss_pred             cCCcCCcEEEEEEEEEccCC
Q psy12425        151 QGLTEGQEYLFHVMAVNENG  170 (591)
Q Consensus       151 ~~l~~~~~y~~~~~a~n~~g  170 (591)
                      ..|.++..|.|++.+....+
T Consensus       155 ~~l~~~~~y~f~ltv~k~~r  174 (440)
T PF02010_consen  155 STLSPGSTYTFTLTVSKGSR  174 (440)
T ss_dssp             --------------------
T ss_pred             HHcCCCceEEEEEEEEeCCC
Confidence            56888888999999987664

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=89.95  E-value=2.4  Score=31.26  Aligned_cols=65  Identities=17%  Similarity=0.264  Sum_probs=47.6

Q ss_pred             cCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEE--EeecCcceEEEcCCc--CCcEEEEEEEEEcc
Q psy12425        102 TKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICI--STTCHDTTFIVQGLT--EGQEYLFHVMAVNE  168 (591)
Q Consensus       102 ~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~--~~~~y~~~~~a~n~  168 (591)
                      ..-...|+|+++..  ...-..|.+++.......|..+  ........+.+....  ....|.+||+|...
T Consensus        33 ~nf~~iL~W~~~~~--~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~  101 (107)
T PF01108_consen   33 VNFKHILRWDPGPG--SPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEVG  101 (107)
T ss_dssp             ETTEEEEEEEESTT--SSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEET
T ss_pred             ECCceEEEeCCCCC--CCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEeC
Confidence            34568999998442  2245579999997778899988  445666777776644  67899999999854

...

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=89.90  E-value=4.5  Score=28.51  Aligned_cols=56  Identities=14%  Similarity=0.200  Sum_probs=36.9

Q ss_pred             eEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425         12 NTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus        12 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      ...|.+.+.+. ...+.|+.||+.+......        ..+.   ..+...|.|+..+....|....
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~---~~~~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLF---WQPDRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEE---eCCCCCeeEEEEEEcCCCCEEE
Confidence            45555555554 3499999999998443221        1332   2335789999999988887654

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=88.74  E-value=3.7  Score=41.42  Aligned_cols=47  Identities=28%  Similarity=0.441  Sum_probs=35.9

Q ss_pred             EEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425        518 VEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP  565 (591)
Q Consensus       518 v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~  565 (591)
                      +.+.......|.....+....+.+.++-+| .|.++|+|.|..|....
T Consensus       641 ~a~~a~~~~~~vta~rt~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~  687 (952)
T COG4733         641 WAYEAGWDGNWITAPRTSAAGFDVEGIPAG-QYAIRVRAINVFEPNSP  687 (952)
T ss_pred             HHhhcccCCceEecccccccceeecCcCcc-ceEEEEEEeeccCCCCC
Confidence            333333334777777888899999999995 69999999999997543

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=87.68  E-value=34  Score=34.65  Aligned_cols=238  Identities=13%  Similarity=0.162  Sum_probs=125.9

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEE--ecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEE--eCCcce--
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISW--LKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV--NKGGVK--  374 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~--n~~g~~--  374 (591)
                      ......|+.+.+.|.+.|.....+..  .++|..+....      -+....+   ...|..+|.|+..+.  +.....  
T Consensus       395 ~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~------Y~~~~~~---~f~P~~~G~Y~IeV~vKdk~S~~~y  465 (667)
T PRK14081        395 GKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKID------YGKNNWV---NFIPEEKGNYELEVRVKDKYSDKEY  465 (667)
T ss_pred             CCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEee------cccccEE---EEEECCCeeEEEEEEEecccCchhc
Confidence            35577899999999998765555543  23555443210      0011122   345678899887654  433322  


Q ss_pred             --eeeeEEEEec-CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEe--eCCeEeeeccceEEEecCCeeEEEEe
Q psy12425        375 --STKAELIIMT-APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWY--RDNEVIESGGHFHVETSERHAILTIR  449 (591)
Q Consensus       375 --~~~~~l~v~~-~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~--~~~~~~~~~~~~~~~~~~~~~~l~i~  449 (591)
                        ...+.+.|.. .|.....-..........|+.+++.|.+++.-...+.+.  .+|....      .+.-.....+++.
T Consensus       466 D~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~------~t~Ys~~~~ysf~  539 (667)
T PRK14081        466 DAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVE------ETDYIKNKKYKFI  539 (667)
T ss_pred             ccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEE------EeeccccceEEEe
Confidence              3446666665 332111101111233467999999999988655544432  3444331      1212233344443


Q ss_pred             ccCCCcceeEEEEEE--cCCCcc----ceEEEEEecCCCCCCCCCeeeeecC---CeeEEEeeccccCCCcceeeEEEEe
Q psy12425        450 DASNVDTAPYRVVAE--NDLGMD----SAIVKIQISDRPDPPQFPTVEDIGH---DSLALVWRAPIWDGGSNITNYIVEK  520 (591)
Q Consensus       450 ~~~~~~~g~y~c~a~--n~~g~~----~~~~~~~v~~~p~~p~~~~~~~~~~---~~v~l~W~~p~~~~~~~~~~y~v~~  520 (591)
                         |..+|.|++.+.  |.....    ...+.+.|..+ .|+.+..+.....   -...++|.+-. .||..+ .|+.+.
T Consensus       540 ---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~-~pi~nt~~~~~~~~~~~n~~~t~~~~~-~gg~~v-~Yef~v  613 (667)
T PRK14081        540 ---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA-LPITNTKIKTSKKKFKCNEEVTFSVKS-EGGKDV-CYEFYI  613 (667)
T ss_pred             ---ecCCceEEEEEEEcccccccccccceEEEEEEcCC-CCceeeEEEeecceEEcCCeEEEEEEc-cCCCcE-EEEEEE
Confidence               666888877765  443322    34556667643 3444444332111   12345555432 456444 777766


Q ss_pred             eeCCCCceEEece-eeeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425        521 REHPMSSWIRVGN-TRFTTMAITGLSPGHQYEFRVYAENVYGR  562 (591)
Q Consensus       521 ~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~  562 (591)
                      ..  .+.|..+.. .....+++.-...| .|.+-|.+....+.
T Consensus       614 ~~--~g~w~~vq~ys~k~~ysf~p~~~g-~Y~ilvl~ks~~~k  653 (667)
T PRK14081        614 ME--KGEWKLVQKYSRKNYYSFMPFNKG-KYKVLVLCKSYYKK  653 (667)
T ss_pred             EE--CCcEEEEeeccccCceEEEeccCC-cEEEEEEEeccccc
Confidence            54  568888743 34456665555544 36666666655553

>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function

Probab=87.17  E-value=6.4  Score=25.77  Aligned_cols=59  Identities=19%  Similarity=0.352  Sum_probs=39.1

Q ss_pred             CceEEEEECCEEeecCCceeEEEeCC-eEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         24 PMEVSLTKNGRVVQSDDRFKFTVLDD-YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        24 ~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      .....|+++++.+..   ..+...++ -.+..-..+.+...|.+++.+....|..-......|
T Consensus         6 ~v~H~W~~~g~~~~~---i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V   65 (66)
T PF11141_consen    6 TVYHRWYKNGKLVAR---IPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV   65 (66)
T ss_pred             EEEEEEEECCEEEEE---EEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence            346789999987632   22222222 234455566668999999999999988876666554

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=86.73  E-value=7.8  Score=27.29  Aligned_cols=64  Identities=11%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             ccceeccccEEEEEEEcCC-----CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425        301 NANAIQNHNAQFQCTITGC-----PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      ...+..|..++++|.....     ....+.|..++..++ ...+....+ ...++++.++.....-.|-|.
T Consensus        12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-~~qy~~in~-~~SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen   12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-GSQYRVIND-TVSSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-CGCEEEEST-TEEEEEESS--SSEEEEEEEE
T ss_pred             CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-hhHcceeCC-eEEEEEEccCCCCCceEEEEE
Confidence            3447789999999998532     456799999888555 445554433 346788888776666666665

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=86.31  E-value=3.1  Score=37.46  Aligned_cols=21  Identities=10%  Similarity=0.083  Sum_probs=17.6

Q ss_pred             eEEEEEEecc-CC-CceEEEEEC
Q psy12425         12 NTKVKIFYAG-DQ-PMEVSLTKN   32 (591)
Q Consensus        12 ~~~l~C~~~~-~p-~~~v~W~~~   32 (591)
                      .++|+|.+.| .| ...+.|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            5799999999 44 458899999

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=82.40  E-value=9.9  Score=26.09  Aligned_cols=19  Identities=21%  Similarity=0.302  Sum_probs=15.3

Q ss_pred             EEEcceecccceEEEEEEE
Q psy12425        350 LIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       350 l~i~~~~~~d~g~y~c~a~  368 (591)
                      ........+|+|.+.|.|.
T Consensus        45 ~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   45 VSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             EEEESBTCGGSEEEEEEEE
T ss_pred             EEEecCCCCCCEEEEEEEc
Confidence            4556677799999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=80.36  E-value=18  Score=25.51  Aligned_cols=56  Identities=11%  Similarity=0.134  Sum_probs=35.9

Q ss_pred             eEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425        405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA  472 (591)
Q Consensus       405 ~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~  472 (591)
                      ...|.+.+.+. ...+.|+.||..+.....        ...+.   ..+...|.|+..+.+..|....
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~--------~~~~~---~~~~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP--------GHQLF---WQPDRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCC--------CCeEE---eCCCCCeeEEEEEEcCCCCEEE
Confidence            44555566555 449999999998832211        12222   2335679999999988887643

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=80.13  E-value=18  Score=25.52  Aligned_cols=83  Identities=11%  Similarity=0.129  Sum_probs=49.3

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceee
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST  376 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~  376 (591)
                      ..+....+..|+++.+.|......+..+.|.-.-      .+..+....+=..+.+.+++.  .....|.+.-.......
T Consensus         8 v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L------~k~~~~~g~~W~~f~LsnV~~--ds~~~C~~~C~g~Q~~~   79 (91)
T PF03921_consen    8 VSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSL------SKTELDSGPQWKAFQLSNVTE--DSSPLCFFNCSGEQSSA   79 (91)
T ss_dssp             EESSEEEEETTEEEEEEEEESSSS-SEEEEESSS------EEEEEEEETTEEEEEEEEE-S--CEEEEEEEEETTEEEEE
T ss_pred             EECCccEECCCCCEEEEEcCCCCCCCcceEEEec------CCcccCCCCcEEEEEEEcccc--CCeEEEEEEcCCeEEEe
Confidence            3445666889999999999876544455664321      111122222233577888885  35778998875445567


Q ss_pred             eeEEEEecCCc
Q psy12425        377 KAELIIMTAPK  387 (591)
Q Consensus       377 ~~~l~v~~~p~  387 (591)
                      ++.+.|..+|.
T Consensus        80 ~~~ItVY~~Pe   90 (91)
T PF03921_consen   80 SANITVYKPPE   90 (91)
T ss_dssp             EEEEEEEB--S
T ss_pred             EEeeEEeCCCC
Confidence            78888877664

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	591
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		3e-46
3lpw_A	197	Crystal Structure Of The Fniii-Tandem A77-A78 From		1e-36
3lpw_A	197	Crystal Structure Of The Fniii-Tandem A77-A78 From		1e-15
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		6e-23
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		1e-22
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		5e-19
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		5e-18
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		1e-14
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		3e-14
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		2e-04
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		1e-13
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		1e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-13
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		4e-07
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		2e-13
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		3e-04
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		3e-13
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		3e-13
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		1e-12
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-12
2yux_A	120	Solution Structure Of 3rd Fibronectin Type Three Do		2e-12
1bpv_A	112	Titin Module A71 From Human Cardiac Muscle, Nmr, 50		1e-11
1bpv_A	112	Titin Module A71 From Human Cardiac Muscle, Nmr, 50		1e-10
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-11
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		8e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		2e-10
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		2e-10
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		6e-10
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		1e-09
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		1e-09
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		7e-09
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-09
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		2e-08
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		7e-08
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		1e-07
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		1e-07
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-07
2e7c_A	118	Solution Structure Of The 6th Ig-Like Domain From H		3e-07
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		4e-07
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		4e-07
1uem_A	117	Solution Structure Of The First Fibronectin Type Ii		4e-07
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-07
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-07
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		1e-06
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		2e-06
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		2e-06
3knb_B	107	Crystal Structure Of The Titin C-Terminus In Comple		2e-06
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		2e-06
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		8e-04
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		2e-06
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		3e-06
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		8e-04
2wwk_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		5e-06
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-06
2wp3_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		5e-06
2cqv_A	114	Solution Structure Of The Eighth Ig-Like Domain Of		8e-06
3mtr_A	215	Crystal Structure Of The Ig5-Fn1 Tandem Of Human Nc		8e-06
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		1e-05
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-05
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-05
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		3e-05
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		3e-05
1x3d_A	118	Solution Structure Of The Fibronectin Type-Iii Doma		4e-05
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		4e-05
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		8e-05
3kld_A	384	Ptprg Cntn4 Complex Length = 384		9e-05
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		1e-04
1g1c_A	99	I1 Domain From Titin Length = 99		1e-04
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		2e-04
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		2e-04
1x4z_A	121	Solution Structure Of The 2nd Fibronectin Type Iii		3e-04
2dku_A	103	Solution Structure Of The Third Ig-Like Domain Of H		3e-04
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		6e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		6e-04
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		6e-04
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		7e-04
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		7e-04
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		7e-04

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 142/287 (49%), Gaps = 5/287 (1%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 346
            A AP     LRN N     NA   C +TG PKP + W +  +EI      +   E  G 
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD--KGE 404
            + LII SV   DA  Y  RA N+GG  S  A L +    K ++P            +GE
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVA 463
            V +KIPF+G P P ITW +  ++I++ GH+ V  +     L   +     D   Y V A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 464 ENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH 523
           +N  G+D   V++ ++D PDPP+   V D+  DS+ L W  P  DGGS ITNYIVEK   
Sbjct: 181 KNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCAT 240
Query: 524 PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
               W+RVG  R T   +  L     Y+FRV AEN +G S PS  S+
Sbjct: 241 TAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSE 287

>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/189 (42%), Positives = 110/189 (58%), Gaps = 5/189 (2%)
Query: 98  VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 157
           V E+TK + TL W+PP  DGG K+ +Y+VE+R+ +   +  ++T CH T++ V  L EG 
Sbjct: 14  VKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGC 73
Query: 158 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 217
            Y F V+A NE G+G P E    +KA    ++P PPG   +  V  + V+LSW+KP  DG
Sbjct: 74  SYYFRVLAENEYGIGLPAETAESVKAS---ERPLPPGKITLMDVTRNSVSLSWEKPEHDG 130
Query: 218 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
           GSRI GY ++    GSD W     A    ++  I  LI+G +Y FRV AQNE G+S P  
Sbjct: 131 GSRILGYIVEMQTKGSDKW--ATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQ 188
Query: 278 ASNSVQIKD 286
            S  V  KD
Sbjct: 189 LSVPVIAKD 197

>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 459 YRVVAENDLGMD---SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN 515
           +RV+AEN+ G+         ++ S+RP PP   T+ D+  +S++L W  P  DGGS I  
Sbjct: 77  FRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILG 136
Query: 516 YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           YIVE +      W      + T   ITGL  G +Y FRV A+N  G SDP   S
Sbjct: 137 YIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLS 190

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 93/197 (47%), Gaps = 5/197 (2%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 346
            A AP     LRN N     NA   C +TG PKP + W +  +EI      +   E  G 
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTA--YFDKGE 404
            + LII SV   DA  Y  RA N+GG  S  A L +    K ++P         +  +GE
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVA 463
            V +KIPF+G P P ITW +  ++I++ GH+ V  +     L   +     D   Y V A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 464 ENDLGMDSAIVKIQISD 480
           +N  G+D   V++ ++D
Sbjct: 181 KNRFGIDQKTVELDVAD 197

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 5/194 (2%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GDTYT 349
           AP     LRN N     NA   C +TG PKP + W +  +EI      +   E  G  + 
Sbjct: 2   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTA--YFDKGENVV 407
           LII SV   DA  Y  RA N+GG  S  A L +    K ++P         +  +GE V 
Sbjct: 62  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 121
Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVAEND 466
           +KIPF+G P P ITW +  ++I++ GH+ V  +     L   +     D   Y V A+N 
Sbjct: 122 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 181
Query: 467 LGMDSAIVKIQISD 480
            G+D   V++ ++D
Sbjct: 182 FGIDQKTVELDVAD 195

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 1/195 (0%)
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT 347
           M+ +AP I   +++        AQ  C I G P P I W +  +E+  S ++ + ++G T
Sbjct: 3   MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
           +TL + +    D   Y C A N+ G   T ++L++   P+F+     ++  Y   G  + 
Sbjct: 63  HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122
Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDAS-NVDTAPYRVVAEND 466
           + + + G P P +TW+   +++++  +  +E +E +  L +++         Y+V   N 
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 467 LGMDSAIVKIQISDR 481
            G   AI+ ++I D+
Sbjct: 183 FGTVDAILDVEIQDK 197

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 55/84 (65%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
           P+PP+FP +E+I  +++ L W+ P  DGGS +TNY +EKRE    SW     +R+T   I
Sbjct: 10  PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTI 69
Query: 542 TGLSPGHQYEFRVYAENVYGRSDP 565
            GL  G QYEFR+ AEN +G+S P
Sbjct: 70  EGLRAGKQYEFRIIAENKHGQSKP 93

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 117/290 (40%), Gaps = 21/290 (7%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
           A + P  I PL +  A        QC + G P+  I+W K   ++  +  + +  + +  
Sbjct: 2   AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFR---DTAYFDKGEN 405
           +L+IN V   D  EY C+A N  G  ++ A L+I    +  +PP F       +   G  
Sbjct: 62  SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK---ERKLPPSFARKLKDVHETLGFP 118
Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
           V  +    G    +++WY+D E+++   +         A L I          Y   A N
Sbjct: 119 VAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178
Query: 466 DLGMDSAIVKIQISDRPDPPQF---PTVEDI-----GHDSLALVWRAPIWDGGSNITNYI 517
            LG  S+  K+ +S+   PP F   P   D+     G     +   API      IT + 
Sbjct: 179 PLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI-----KIT-WA 232
Query: 518 VEKRE-HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
            + RE  P  ++         T+ +  ++ G   ++  YA NV G+   S
Sbjct: 233 KDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS 282

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%)
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI---FAE 344
           M  +AP    PL++   ++   A F+  I+G P P +SW +  + I+ S    +   F++
Sbjct: 1   MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF---RDTAYFD 401
           G    L I +V   ++  Y  +A N  G  ++ AEL++        PP F     +    
Sbjct: 61  GRA-KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE---TAPPNFVQRLQSMTVR 116
Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
           +G  V +++  TG P P + +YRD   I+S   F +        L I +A   D+  Y V
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 462 VAENDLGMDSAIVKIQI 478
            A N +G  ++  ++ +
Sbjct: 177 NATNSVGRATSTAELLV 193

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG--HFHVETSER 442
           AP F  P +   +    +G     +   +G+P P+++W+RD +VI +       +  S+ 
Sbjct: 5   APTFTQPLQ---SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
            A LTI   +  ++  Y + A N  G  ++  ++ +     PP F
Sbjct: 62  RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF 106

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)
Query: 312 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371
           F+C +TG     I+W K +REI P   + +    +T TL +  V   DA +Y C A N  
Sbjct: 25  FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES 431
           G  S  A+L +   P+F    +   +    + E+   +    G P+ K+ WY+D   I+ 
Sbjct: 85  GKDSCSAQLGVQAPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142
Query: 432 GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
              F +   E  A+L + + S  D+  Y   A N  G  S+   +++    +PP F
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVF 195

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
           M  P F++ P   D A    GE+   K   TG    KITW +DN  I  GG++ +   E 
Sbjct: 3   MAPPFFDLKPVSVDLAL---GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
            A LT+   +  D   Y   A N  G DS   ++ +     PP+F
Sbjct: 60  TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ---APPRF 101

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)
Query: 312 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 371
           F+C +TG     I+W K +REI P   + +    +T TL +  V   DA +Y C A N  
Sbjct: 25  FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES 431
           G  S  A+L +   P+F    +   +    + E+   +    G P+ K+ WY+D   I+ 
Sbjct: 85  GKDSCSAQLGVQEPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142
Query: 432 GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
              F +   E  A+L + + S  D+  Y   A N  G  S+   +++    +PP F
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVF 195

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
           M  P F++ P   D A    GE+   K   TG    KITW +DN  I  GG++ +   E 
Sbjct: 3   MAPPFFDLKPVSVDLAL---GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
            A LT+   +  D   Y   A N  G DS   ++ +    +PP+F
Sbjct: 60  TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ---EPPRF 101

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%)
Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI---FAE 344
           M  +AP    PL++   ++   A F+  I+G P P +SW +  + I+ S    +   F++
Sbjct: 1   MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF---RDTAYFD 401
           G    L I +V   ++  Y  +A N  G  ++ AEL++        PP F     +    
Sbjct: 61  GRA-KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE---TAPPNFVQRLQSMTVR 116
Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
           +G  V +++  TG P P + +YRD   I+S   F +        L I +A   D+  Y V
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 462 VAENDLGMDSAIVKIQI 478
            A N +G  ++  ++ +
Sbjct: 177 NATNSVGRATSTAELLV 193

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG--HFHVETSER 442
           AP F  P +   +    +G     +   +G+P P+++W+RD +VI +       +  S+ 
Sbjct: 5   APTFTQPLQ---SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
            A LTI   +  ++  Y + A N  G  ++  ++ +     PP F
Sbjct: 62  RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF 106

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 111/282 (39%), Gaps = 15/282 (5%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-------ARHHIFAEGDTY 348
           I+ L+N    +N      C   G P P I+W +     T +        R  +  +  + 
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD-KGENVV 407
           +L I  V   D+  Y C A ++ G       L I  APKF        T Y+  +G  + 
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF----ISNQTIYYSWEGNPIN 119
Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVET--SERHAILTIRDASNVDTAPYRVVAEN 465
           +       P   I W RD  V+ +    +++T  + R  IL I   S+ D   Y   A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 466 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
            +G       + ++D P  P    + ++   +  + +  P   GG  I +Y V+ +E   
Sbjct: 180 HIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS 239
Query: 526 SSWIRVGNTRFTTMAI-TGLSPGHQYEFRVYAENVYGRSDPS 566
             W  V +    TM +   L P   YE RV A N  G+ D S
Sbjct: 240 EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 111/282 (39%), Gaps = 15/282 (5%)
Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-------ARHHIFAEGDTY 348
           I+ L+N    +N      C   G P P I+W +     T +        R  +  +  + 
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD-KGENVV 407
           +L I  V   D+  Y C A ++ G       L I  APKF        T Y+  +G  + 
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF----ISNQTIYYSWEGNPIN 119
Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVET--SERHAILTIRDASNVDTAPYRVVAEN 465
           +       P   I W RD  V+ +    +++T  + R  IL I   S+ D   Y   A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 466 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
            +G       + ++D P  P    + ++   +  + +  P   GG  I +Y V+ +E   
Sbjct: 180 HIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS 239
Query: 526 SSWIRVGNTRFTTMAI-TGLSPGHQYEFRVYAENVYGRSDPS 566
             W  V +    TM +   L P   YE RV A N  G+ D S
Sbjct: 240 EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 9/228 (3%)
Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
           V +     + I  L  G    +R  A+N A     + A   + + DP   +    +    
Sbjct: 171 VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI-LSDPGLHRQLYFLQRPS 229
Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
           N  AI+  +A  +C ++G P P+ +WL+G   I   ++ +    G    L+I++V   D+
Sbjct: 230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDS 287
Query: 361 DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
             Y C    K    S  AEL ++  P F   P      Y  +  ++  +   +G P P +
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVPPWFLNHP---SNLYAYESMDIEFECAVSGKPVPTV 344
Query: 421 TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
            W ++ +V+    +F +       IL +  +   D   Y+ VAEN+ G
Sbjct: 345 NWMKNGDVVIPSDYFQIVGGSNLRILGVVKS---DEGFYQCVAENEAG 389

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 79/191 (41%), Gaps = 11/191 (5%)
Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEGDTYT 349
           KAP I  PL   +A+    A F C +   P+P ISW +    I     R+ I   G   T
Sbjct: 6   KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65
Query: 350 LIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
           ++  SV   D   Y C A N  GG   +   L +   PK   PP         +G   V+
Sbjct: 66  IL--SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP---INVKIIEGLKAVL 120
Query: 409 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
                G PKP ++W + +  +       V  S     L I +    D   YR VA+N LG
Sbjct: 121 PCTTMGNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLG 177
Query: 469 MD-SAIVKIQI 478
              S +VK+++
Sbjct: 178 TAYSKLVKLEV 188

>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of Slow Type Myosin-Binding Protein C Length = 120

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 474 VKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-G 532
           + IQI DRP PPQ   +ED+  +++AL W  P  DG + IT Y ++K +     W  V  
Sbjct: 10  IDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIE 69
Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           +   T+  IT L  G++Y FRV++EN+ G S+ +T +
Sbjct: 70  HYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMT 106

>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures Length = 112

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 101 ITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIS-TTCHDTTFIVQGLTEGQEY 159
           IT+HT TL W  P+Y GG K+T Y+VE+RD+    W+  + +   +  F V GLTE   Y
Sbjct: 22  ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAY 81
Query: 160 LFHVMAVNENG-MGPPLEGINPIKAK 184
            F V+A N  G + PP E  + I  +
Sbjct: 82  EFRVIAKNAAGAISPPSEPSDAITCR 107

>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures Length = 112

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMA 540
           DPP  P   +I   ++ L W  P + GG  IT+YIVEKR+ P   W++    N       
Sbjct: 12  DPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71
Query: 541 ITGLSPGHQYEFRVYAENVYGR-SDPSTTSDLIT 573
           ++GL+    YEFRV A+N  G  S PS  SD IT
Sbjct: 72  VSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAIT 105

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 293 PEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
           P I +P +  NA A +     F C  +G P+P ISW +  + I  + ++    +G    L
Sbjct: 3   PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTEL 60
Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI 410
            + ++   D   YVCRA NK G    +A L +   P      + ++   ++ G+ V +  
Sbjct: 61  TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHI---IQLKNETTYENGQ-VTLVC 116
Query: 411 PFTGYPKPKITWYR--DNEVIESG-----GHFHVETSERHAILTIRDASNVDTAPYRVVA 463
              G P P+ITW R  D      G     G   V+     + L I+D    D+  Y   A
Sbjct: 117 DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 176
Query: 464 ENDLG 468
            + +G
Sbjct: 177 ASRIG 181

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 384 TAPKFNVPPR-FRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
           + P  ++P + F  TA  ++GE +      +G P+P I+W+R+ ++IE    + ++ S  
Sbjct: 1   SMPAISMPQKSFNATA--ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT 58
Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVW 502
              LT+R+  N D  PY   A N  G D     +Q+  +P   Q        +  + LV 
Sbjct: 59  E--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVC 116
Query: 503 RA 504
            A
Sbjct: 117 DA 118

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
           Q  +A+  C ++  P P +SWL  + E+T  + +  FA      L I ++   D   Y C
Sbjct: 16  QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNR-FAMLANNNLQILNINKSDEGIYRC 74
Query: 366 --RAVNKGGVKSTKAELIIMTAPKFNVPPR-FRDTAYFDKGENVVVKIPFTGYPKPKITW 422
             R   +G +      +I+   P  ++P + F  TA  ++GE +      +G P+P I+W
Sbjct: 75  EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA--ERGEEMTFSCRASGSPEPAISW 132
Query: 423 YRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           +R+ ++IE    + ++ S     LT+R+  N D  PY   A N  G D     +Q+
Sbjct: 133 FRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
           Q  +A+  C ++  P P +SWL  + E+T  + +  FA      L I ++   D   Y C
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNR-FAMLANNNLQILNINKSDEGIYRC 170
Query: 366 --RAVNKGGVKSTKAELIIMTAPKFNVPPR-FRDTAYFDKGENVVVKIPFTGYPKPKITW 422
             R   +G +      +I+   P  ++P + F  TA  ++GE +      +G P+P I+W
Sbjct: 171 EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA--ERGEEMTFSCRASGSPEPAISW 228
Query: 423 YRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           +R+ ++IE    + ++ S     LT+R+  N D  PY   A N  G D     +Q+
Sbjct: 229 FRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI--FAE 344
           P+  K PE      +   +    A F C  TG PKP I+W+K  ++++ S R  +  F +
Sbjct: 8   PVFVKVPE------DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDD 60
Query: 345 GDTYTLIINSVYGVDADE--YVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFR 395
           G    L I  +  V  DE  Y C A N  G  +T A+L ++         P  ++ P+ +
Sbjct: 61  GAGSVLRIQPLR-VQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLK 119
Query: 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 455
                +KG    +     G P P+I+W++D   ++           R   L I  +   D
Sbjct: 120 ---VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESD 176
Query: 456 TAPYRVVAENDLG 468
              Y  VA N  G
Sbjct: 177 QGKYECVATNSAG 189

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 106/275 (38%), Gaps = 35/275 (12%)
Query: 312 FQCTITGCPKPTISWLKGSREITPSARH----HIFAEGDTYT-LIINSVYGVDADEYVCR 366
            +C   G P P ISW    ++I  + R+    ++   GD  + L I SV+  D   Y C 
Sbjct: 449 LKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI 508
Query: 367 AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 426
           A +K GV    A+L +   P      R  +      GE ++V  P  GYP   I W RDN
Sbjct: 509 AKSKVGVAEHSAKLNVYGLPYI----RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDN 564
Query: 427 EVIE--------SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD---SAIVK 475
             +           G   +E  ER          N D A Y  VA+N  G     S  V+
Sbjct: 565 RALPINRKQKVFPNGTLIIENVER----------NSDQATYTCVAKNQEGYSARGSLEVQ 614
Query: 476 IQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKR---EHPMSSWIRVG 532
           + +  R  P  F          L L    P  D   NI ++ ++ +   E    +  RVG
Sbjct: 615 VMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNI-DWTLDGQAISEDLGITTSRVG 673
Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST 567
             R + + I  +   H   F  +A N+ G    +T
Sbjct: 674 R-RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTT 707

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 14/225 (6%)
Query: 262 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 321
           +   AQN  G  +   A  +V  +D + +  P I +  +     +   A   C  +G P 
Sbjct: 79  YECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 380
           P I+W K    + PSA +    +  +  L I S    D  +Y C A N  GV+ S+ A L
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 381 IIM---TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV 437
            +     AP+F++ P   +      G NV +     G P P + W +  E +       V
Sbjct: 198 YVRVQNVAPRFSILPMSHEIM---PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV 254
Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
             +    +L + D    D+A Y  VA + LG+  A+ +I +   P
Sbjct: 255 GRN----VLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSLP 293

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 82/208 (39%), Gaps = 12/208 (5%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 346
           AA  PEII   +N        A F C   G P P+I W K  ++++ +   +   E  G 
Sbjct: 5   AAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 64
Query: 347 TYTLIINSVY-GVDADEYVCRAVNK-GGVKSTKAELIIMTAPK----FNVPPRFRDTAYF 400
              L I  V  G D   Y C A N  G   S  A L I    K    F V  +   T   
Sbjct: 65  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 124
Query: 401 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
           + G  V++     G P P I W ++   ++     +   S +   L I ++   D   Y 
Sbjct: 125 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY---SLKDGFLQIENSREEDQGKYE 181
Query: 461 VVAENDLGMD-SAIVKIQISDRPDPPQF 487
            VAEN +G + S    + +  R  PP F
Sbjct: 182 CVAENSMGTEHSKATNLYVKVRRVPPTF 209

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI--FAE 344
           P+  K PE      +   +    A F C  TG PKP I+W+K  ++++ S R  +  F +
Sbjct: 7   PVFIKVPE------DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDD 59
Query: 345 GDTYTLIINSVYGVDADE--YVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFR 395
           G    L I  +  V  DE  Y C A N  G  +T A+L ++         P  ++ P+ +
Sbjct: 60  GAGSVLRIQPLR-VQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLK 118
Query: 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 455
                +K     +     G P P+I+W++D   ++           R   L I  +   D
Sbjct: 119 ---VVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESD 175
Query: 456 TAPYRVVAENDLG 468
              Y  VA N  G
Sbjct: 176 QGKYECVATNSAG 188

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
           P  IV        +  +A F C +     P ++W K  RE+  S ++     G+ Y L I
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 436
Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 394
           N V G D  EY  RA N  G   TK E++ +   + + P +F
Sbjct: 437 NRVKGDDKGEYTVRAKNSYG---TKEEIVFLNVTRHSEPLKF 475

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
           +  +A   C +     PTI W    R++            + Y L I  +   D   Y C
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRC 172
Query: 366 --RAVNKGGVKSTKAELIIMTAPKFNVPPRFRD-----TAYFDKGENVVVKIPFTGYPKP 418
             R + +G +     ++I+      NVPP  +       A  + G++V +     G+P+P
Sbjct: 173 EGRILARGEINFKDIQVIV------NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP 226
Query: 419 KITWYRDNEVIESGGHFHVETSERHAI------LTIRDASNVDTAPYRVVAENDLGMDSA 472
            ++W +D E IE+      E  E+H        LTIR+    D A Y  +AEN  G   A
Sbjct: 227 TMSWTKDGEPIEN----EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDA 282
Query: 473 IVKIQI 478
            + +++
Sbjct: 283 SIHLKV 288

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 17/196 (8%)
Query: 287 PMAAK--APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI-TPSARHHIFA 343
           P+A +  +P II    +    +N  A   C + G P+PTI W K    + T   + H   
Sbjct: 2   PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 344 EGDTYTLIINSVYGV---DADEYVCRAVNK-GGVKSTKAEL-IIMTAPKFNVPPRFRDTA 398
             D       ++ G    D  EY C A N+ G   S  A L I +    F V P+    A
Sbjct: 62  FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121
Query: 399 YFDKGENVVVKI-PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-----LTIRDAS 452
              KGE  +++  P  G P+P + W +D   ++         S R  I     L I +  
Sbjct: 122 ---KGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 453 NVDTAPYRVVAENDLG 468
            +D   Y+ +A+N +G
Sbjct: 179 PIDEGNYKCIAQNLVG 194

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 17/196 (8%)
Query: 287 PMAAK--APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI-TPSARHHIFA 343
           P+A +  +P II    +    +N  A   C + G P+PTI W K    + T   + H   
Sbjct: 2   PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 344 EGDTYTLIINSVYGV---DADEYVCRAVNK-GGVKSTKAEL-IIMTAPKFNVPPRFRDTA 398
             D       ++ G    D  EY C A N+ G   S  A L I +    F V P+    A
Sbjct: 62  FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121
Query: 399 YFDKGENVVVKI-PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-----LTIRDAS 452
              KGE  +++  P  G P+P + W +D   ++         S R  I     L I +  
Sbjct: 122 ---KGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 453 NVDTAPYRVVAENDLG 468
            +D   Y+ +A+N +G
Sbjct: 179 PIDEGNYKCIAQNLVG 194

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 11/190 (5%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 346
            A  PEII   +N        A F C   G P P+I W K  ++++ +   +   E  G 
Sbjct: 3   GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 347 TYTLIINSVY-GVDADEYVCRAVNK-GGVKSTKAELIIMTAPK----FNVPPRFRDTAYF 400
              L I  V  G D   Y C A N  G   S  A L I    K    F V  +   T   
Sbjct: 63  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 401 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
           + G  V++     G P P I W ++   ++     +   S +   L I ++   D   Y 
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY---SLKDGFLQIENSREEDQGKYE 179
Query: 461 VVAENDLGMD 470
            VAEN +G +
Sbjct: 180 CVAENSMGTE 189

>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human Myosin-Binding Protein C, Fast-Type Length = 118

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
           I   PK  +P   R T     GE + + +PF G P+P++ W +    +++    HV TS+
Sbjct: 18  IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSD 76
Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
              +  +R A+  D+  Y +  + +   D+A ++I++ ++
Sbjct: 77  FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 389 NVPPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG--GHFHVETSERH 443
            +PP+          D+G+ + V   FTG P P++TW      I S   G FH+E ++  
Sbjct: 3   GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
             L I D    D   Y +   N+ G DSA V I I
Sbjct: 63  TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 389 NVPPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG--GHFHVETSERH 443
            +PP+          D+G+ + V   FTG P P++TW      I S   G FH+E ++  
Sbjct: 5   GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 64
Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
             L I D    D   Y +   N+ G DSA V I I
Sbjct: 65  TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99

>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa1568 Protein Length = 117

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS-SWIRVGNTRF 536
           +SD P PP  P V D+  +S+ L W+ P   G    + YI+E     +S SW  V N   
Sbjct: 12  LSDLPGPPSKPQVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVK 70
Query: 537 TTM-AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           TT+  + GL P   Y F V A N  G SDPS  SD + T
Sbjct: 71  TTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT 109

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 12/186 (6%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 351
           P  I   ++   +    A F C  TG PKP ++W K  +++       I F E     L 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 352 INSVYG-VDADEYVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKG 403
           I  +    D + Y C A N  G  +  A+L ++         P  ++ P+ +     ++ 
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 404 ENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 463
               +    +G P P+ITW++D   ++           R   L I  +   D   Y  VA
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 464 ENDLGM 469
            N  G+
Sbjct: 184 TNSAGV 189

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 12/186 (6%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 351
           P  I   ++   +    A F C  TG PKP ++W K  +++       I F E     L 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 352 INSVYG-VDADEYVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKG 403
           I  +    D + Y C A N  G  +  A+L ++         P  ++ P+ +     ++ 
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 404 ENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 463
               +    +G P P+ITW++D   ++           R   L I  +   D   Y  VA
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 464 ENDLGM 469
            N  G+
Sbjct: 184 TNSAGV 189

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
           +F+C  +G P+PT+ WLK  +E  P  R   +     T+++I++SV   D   Y C   N
Sbjct: 36  KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 95
Query: 370 K-GGVKSTKAELIIMTAPKFNV----PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 424
           + G +  T    ++  +P   +     P  +  A    G NV         P+P I W +
Sbjct: 96  EYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL---GSNVEFMCKVYSDPQPHIQWLK 152
Query: 425 -----------DN----EVIESGGHFHVETSERHA-ILTIRDASNVDTAPYRVVAENDLG 468
                      DN    +++++ G   V T+++   +L +R+ S  D   Y  +A N +G
Sbjct: 153 HIEVNGSKIGPDNLPYVQILKTAG---VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 209
Query: 469 M 469
           +
Sbjct: 210 L 210

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
           +F+C  +G P+PT+ WLK  +E  P  R   +     T+++I++SV   D   Y C   N
Sbjct: 35  KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 370 K-GGVKSTKAELIIMTAPKFNV----PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 424
           + G +  T    ++  +P   +     P  +  A    G NV         P+P I W +
Sbjct: 95  EYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL---GSNVEFMCKVYSDPQPHIQWLK 151
Query: 425 -----------DN----EVIESGGHFHVETSERHA-ILTIRDASNVDTAPYRVVAENDLG 468
                      DN    +++++ G   V T+++   +L +R+ S  D   Y  +A N +G
Sbjct: 152 HIEVNGSKIGPDNLPYVQILKTAG---VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Query: 469 M 469
           +
Sbjct: 209 L 209

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 13/175 (7%)
Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
           A+       +C   G P P I W K    ++P       AE    TL I SV   D   Y
Sbjct: 218 ALVGQQVTLECFAFGNPVPRIKWRKVDGSLSP---QWTTAEP---TLQIPSVSFEDEGTY 271
Query: 364 VCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWY 423
            C A N  G  + +  +I+   P++    +       D G N+       G P+P + W 
Sbjct: 272 ECEAENSKGRDTVQGRIIVQAQPEWL---KVISDTEADIGSNLRWGCAAAGKPRPTVRWL 328
Query: 424 RDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           R+ E + S     V   +    L     S  D+  Y+ VAEN  G   A  ++ +
Sbjct: 329 RNGEPLASQNRVEVLAGD----LRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379

>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
           P  AS+  Q   P   + P    P+R    +    A+ +C + G P P + W KG +++ 
Sbjct: 2   PMKASSGDQGSPPCFLRFPR---PVR---VVSGAEAELKCVVLGEPPPVVVWEKGGQQLA 55
Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
            S R    A+G  + L++ +    DA  YVCRA N  G     A + ++  P
Sbjct: 56  ASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 351
           P     + + + ++   A+F C + G P P + W K    +  S    I + E    +L 
Sbjct: 42  PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
           I+ V G D  +Y C+AVN  G  +  AEL++ T  K
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 368 VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYR 424
           +N   V++  A L  +   K +V P F  T       +G          GYP P++ W++
Sbjct: 18  INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 425 DNEVIESGGHFHVETSER-HAILTIRDASNVDTAPYRVVAENDLG 468
           D+  ++   HF ++  E  +  LTI +    D A Y   A N LG
Sbjct: 78  DDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 369
           +F+C  +G P PT+ WLK  +E  P  R   +     T+++I++SV   D   Y C   N
Sbjct: 35  KFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 370 K-GGVKSTKAELIIMTAPKFNV----PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 424
           + G +  T    ++  +P   +     P  +  A    G NV         P+P I W +
Sbjct: 95  EYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL---GSNVEFMCKVYSDPQPHIQWLK 151
Query: 425 -----------DN----EVIESGGHFHVETSERHA-ILTIRDASNVDTAPYRVVAENDLG 468
                      DN    +++++ G   V T+++   +L +R+ S  D   Y  +A N +G
Sbjct: 152 HIEVNGSKIGPDNLPYVQILKTAG---VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Query: 469 M 469
           +
Sbjct: 209 L 209

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 310 AQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYG-VDADEYVCRA 367
           A F C  TG PKP ++W K  +++       I F E     L I  +    D + Y C A
Sbjct: 24  ASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVA 83
Query: 368 VNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 420
            N  G  +  A+L ++         P  ++ P+ +     ++     +    +G P P+I
Sbjct: 84  QNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLK---VVERTRTATMLCAASGNPDPEI 140
Query: 421 TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
           TW++D   ++           R   L I  +   D   Y  VA N  G+
Sbjct: 141 TWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAGV 189

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 351
           P     + +   ++   A+F C + G P P + W K    +  S    I + E    +L 
Sbjct: 42  PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
           I+ V G D  +Y C+AVN  G  +  AEL++ T  K
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 368 VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYR 424
           +N   V++  A L  +   K +V P F  T       +G          GYP P++ W++
Sbjct: 18  INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 425 DNEVIESGGHFHVETSER-HAILTIRDASNVDTAPYRVVAENDLG 468
           D+  ++   HF ++  E  +  LTI +    D A Y   A N LG
Sbjct: 78  DDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122

>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r Mutant Complex Length = 109

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
           R    +    A+ +C + G P P + W KG +++  S R    A+G  + L++ +    D
Sbjct: 22  RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTD 81
Query: 360 ADEYVCRAVNKGGVKSTKAELIIMTAP 386
           A  YVCRA N  G     A + ++  P
Sbjct: 82  AGVYVCRARNAAGEAYAAAAVTVLEPP 108

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 17/172 (9%)
Query: 310 AQFQCTITGCPKPTISWLKGSREITPSARHHI--FAEGDTYTLIINSVYG-VDADEYVCR 366
           A F C  TG P+P I W K  ++++ + R  +  F +G    L I  +    D   Y C 
Sbjct: 24  ASFICQATGDPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV 82
Query: 367 AVNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK 419
           A N  G  S    L ++         P  ++ P+ +     ++     +    +G P P+
Sbjct: 83  ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLK---VVERTRTATMLCAASGNPDPE 139
Query: 420 ITWYRDNEVIESG---GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
           ITW++D   +++    G      SE    L I  +   D   Y  VA N  G
Sbjct: 140 ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAG 191

>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 109

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
           R    +    A+ +C + G P P + W KG +++  S R    A+G  + L++ +    D
Sbjct: 22  RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTD 81
Query: 360 ADEYVCRAVNKGGVKSTKAELIIMTAP 386
           A  YVCRA N  G     A + ++  P
Sbjct: 82  AGVYVCRARNAAGEAYAAAAVTVLEPP 108

>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human Myosin Light Chain Kinase Length = 114

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 40/83 (48%)
Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
           GE+V +    TG      TW +  + I+   H  VE SE  + LTI  A       Y ++
Sbjct: 22  GESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLL 81
Query: 463 AENDLGMDSAIVKIQISDRPDPP 485
            EN LG   A V + + D+PDPP
Sbjct: 82  VENKLGSRQAQVNLTVVDKPDPP 104

>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam Length = 215

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 14/199 (7%)
Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE--TS 440
           M APK   P       Y  +G  V +      YP   I+W+RD +++ S  + +++   +
Sbjct: 17  MYAPKLQGPV----AVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNT 72
Query: 441 ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLAL 500
              + L +   S  D   Y   A N +G +S    +  +D P  P    VE   + S A 
Sbjct: 73  PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEP--YSSTAQ 130
Query: 501 V-WRAPIWDGGSNITNYIVEKR----EHPMSSWIRVGNTRFT-TMAITGLSPGHQYEFRV 554
           V +  P   GG  I  Y  E R    E   S W           + I GL P   Y  R+
Sbjct: 131 VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL 190
Query: 555 YAENVYGRSDPSTTSDLIT 573
            A N  G  + S  S+  T
Sbjct: 191 AALNGKGLGEISAASEFKT 209

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVN 369
           +  C ++G P P +SW    + + P + H +   E   ++LII  V   DA  Y C A N
Sbjct: 28  RMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN 87
Query: 370 KGGVKSTKAELII 382
           + G  S   EL++
Sbjct: 88  RAGQNSFSLELVV 100

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 22/209 (10%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRN-ANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
           S+    + I +P+++ AP     ++     +  H     C   G P P+  W K    I 
Sbjct: 201 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKF---IE 257
Query: 335 PSARHHIFAEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 389
            + R       D     + TLII      D+ +Y+C   N  G +S +  L +       
Sbjct: 258 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 317
Query: 390 VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIR 449
           + P    T   D G   V    +TG P   ++W +D + I   GH         ++L I 
Sbjct: 318 IDP---PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---GH-------SESVLRIE 364
Query: 450 DASNVDTAPYRVVAENDLGMDSAIVKIQI 478
                D   Y+    ND     A  ++++
Sbjct: 365 SVKKEDKGMYQCFVRNDRESAEASAELKL 393

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 22/209 (10%)
Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRN-ANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
           S+    + I +P+++ AP     ++     +  H     C   G P P+  W K    I 
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKF---IE 251
Query: 335 PSARHHIFAEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 389
            + R       D     + TLII      D+ +Y+C   N  G +S +  L +       
Sbjct: 252 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 311
Query: 390 VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIR 449
           + P    T   D G   V    +TG P   ++W +D + I   GH         ++L I 
Sbjct: 312 IDP---PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---GH-------SESVLRIE 358
Query: 450 DASNVDTAPYRVVAENDLGMDSAIVKIQI 478
                D   Y+    ND     A  ++++
Sbjct: 359 SVKKEDKGMYQCFVRNDRESAEASAELKL 387

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
           A  I+   R+    +  +A+F C   G P PT++WL+  + ++ SARH +       T  
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           I+SV   D   Y     N  G +  +  L I
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 95/237 (40%), Gaps = 29/237 (12%)
Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI---QNHNAQFQCTIT 317
           E++ +A+N+ G +L    SN ++++    +K+P  + P  N + +   +      QC   
Sbjct: 91  EYQCFARNKFGTAL----SNRIRLQ---VSKSP--LWPKENLDPVVVQEGAPLTLQCNPP 141
Query: 318 -GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRA-------- 367
            G P P I W+  S E  P  +    ++G    L  ++V   D   +Y C A        
Sbjct: 142 PGLPSPVIFWMSSSME--PITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTI 199
Query: 368 --VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 425
              N   +K      +    P F  P     +    +G +++++   +G P P I WY+ 
Sbjct: 200 QQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKK 259
Query: 426 NEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
              + S      +    +  L I + S  D+  Y  +A N +G     + +++   P
Sbjct: 260 GGDLPSD---KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAP 313

>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of Human Fibronectin Type-Iii Domain Containing Protein 3a Length = 118

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 468 GMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS 527
           G   A +   +S  PD P  P + +   +SL L W+AP  D GS I N+++E  E     
Sbjct: 4   GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGK--- 59
Query: 528 WIRVGNTRF--------TTMAITGLSPGHQYEFRVYAENVYGRS 563
               GN  F            IT LSP    +FR+ A N YG S
Sbjct: 60  ----GNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTS 99

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
           +  I+   R+    +  +A+F C   G P PT++WL+  + ++ SARH +       T  
Sbjct: 8   SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           I+SV   D   Y     N  G +  +  L I
Sbjct: 68  ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 311 QFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
           + +C   G P PTI W +   + I   AR H         L I +    DA  Y C A N
Sbjct: 223 KLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPNFQQEDAGSYECVAEN 278
Query: 370 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 429
             G    K +L     P +    +  +  +    E+V  +    G PKP   W ++ + +
Sbjct: 279 SRGKNVAKGQLTFYAQPNW---VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 335
Query: 430 ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
            +     +E       L I   +  D   Y+ VAEN  G+
Sbjct: 336 LTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGV 371

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 311 QFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
           + +C   G P PTI W +   + I   AR H         L I +    DA  Y C A N
Sbjct: 224 KLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPNFQQEDAGSYECVAEN 279
Query: 370 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 429
             G    K +L     P +    +  +  +    E+V  +    G PKP   W ++ + +
Sbjct: 280 SRGKNVAKGQLTFYAQPNW---VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 336
Query: 430 ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
            +     +E       L I   +  D   Y+ VAEN  G+
Sbjct: 337 LTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGV 372

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 289 AAKAPEII-VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGD 346
            +KAP    V L + +  +  +      + G PKP +SWL+  + + P  R     AEG 
Sbjct: 1   GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
              L I +    DA  Y C+AVN+ G +  +A L
Sbjct: 61  LCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94

>pdb|1G1C|A Chain A, I1 Domain From Titin Length = 99

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDT 347
           + +AP+I   +++    Q  +A F+  + G P P   W K   +I  S R +  + E + 
Sbjct: 2   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 384
             L+I  V G D+   + +A+N  G  S+ A L++  
Sbjct: 62  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 346
           P+++K P I+  L++     +  A+F    TG P+PT  W K  + IT   ++ +  +  
Sbjct: 2   PISSK-PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            + L I+     D+  Y C   N  G  S+  +L I
Sbjct: 61  GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 70/184 (38%), Gaps = 17/184 (9%)
Query: 310 AQFQCTITGCPKPTISWLKGSREIT-----PSARHHIFAEGDTYTLIINSVYGVDADE-- 362
           A   C   G P PTI W KG   +      P +   +   G  + L I        DE  
Sbjct: 27  ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86
Query: 363 YVCRAVN-KGGVKSTKAEL-IIMTAPKFNVPPRFRDTAYFDKGENVVVKI-PFTGYPKPK 419
           YVC A N  G   S  A L + +    F   P          GE  V++  P  G+P+P 
Sbjct: 87  YVCVARNYLGEAVSHDASLEVAILRDDFRQNP---SDVMVAVGEPAVMECQPPRGHPEPT 143
Query: 420 ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQI 478
           I+W +D   ++         + R   L I      D   Y  V  N +G  +S + ++ +
Sbjct: 144 ISWKKDGSPLDDKDE---RITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
Query: 479 SDRP 482
            +RP
Sbjct: 201 LERP 204

>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain From Mouse Biregional Cell Adhesion Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding Protein Length = 121

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE-KREHPMSSWIRVGNT---RFT 537
           P+ P  PT+      S+ + W  P  +GG  I ++ VE K+   +  WI   +       
Sbjct: 18  PEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           ++ ITGL  G  Y+FRV A N+ G S+PS  S
Sbjct: 77  SVEITGLEKGISYKFRVRALNMLGESEPSAPS 108

>pdb|2DKU|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Human Kiaa1556 Protein Length = 103

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
           L N    +   A F C  T  P  T++W KG  E+  S +H    EG T  L I+++   
Sbjct: 15  LTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKA 73
Query: 359 DADEYVCRAVNKGGVKSTKAELII 382
           D+D Y C      G   ++A+L++
Sbjct: 74  DSDTYTCDI----GQAQSRAQLLV 93

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 16/152 (10%)
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
           TL I+ V   D   Y C A +    K     + +   P                GE V +
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 220
Query: 409 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
              + GYP P+I WY++   +ES       T +   +LTI + S  DT  Y V+  N + 
Sbjct: 221 PAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVILTNPIS 275
Query: 469 MD--SAIVKIQISDRPDPPQFPTVEDIGHDSL 498
            +  S +V + +     PPQ      IG  SL
Sbjct: 276 KEKQSHVVSLVVY---VPPQ------IGEKSL 298

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 389 NVPPRFRD-----TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH-----FHVE 438
           NVPP  R       A  +  ++V +     G+P+P +TW +D E IE   +     F+ +
Sbjct: 9   NVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYD 68
Query: 439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
            SE    L I+     D A Y  +AEN  G   A + +++
Sbjct: 69  GSE----LIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 24/179 (13%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
           +F+C   G P P+ISWLK  RE     R   I      ++L++ SV   D   Y C   N
Sbjct: 142 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 201
Query: 370 K-GGVKSTKAELIIMTAP-----KFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWY 423
           K G ++ T    ++  +P     +  +P     TA    G +V          +P I W 
Sbjct: 202 KFGSIRQTYTLDVLERSPHRPILQAGLPA--NQTAVL--GSDVEFHCKVYSDAQPHIQWL 257
Query: 424 RDNEV----IESGGHFHV---------ETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
           +  EV    +   G  +V          T +   +L++ + +  D   Y  +A N +G 
Sbjct: 258 KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF 316

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 311 QFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
           +F+C   G P P+ISWLK  RE     R   I      ++L++ SV   D   Y C   N
Sbjct: 34  RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 93
Query: 370 K-GGVKSTKAELIIMTAP 386
           K G ++ T    ++  +P
Sbjct: 94  KFGSIRQTYTLDVLERSP 111

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 5/122 (4%)
Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
           TL I+ V   D   Y C A +    K     + +   P                GE V +
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 350
Query: 409 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
              + GYP P+I WY++   +ES       T +   +LTI + S  DT  Y V+  N + 
Sbjct: 351 PAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVILTNPIS 405
Query: 469 MD 470
            +
Sbjct: 406 KE 407

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 27/209 (12%)
Query: 274 LPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW--LKGSR 331
           L  +A ++ Q    + AK P       +  A+       +C   G P P I W  L GS+
Sbjct: 195 LSLAAEDARQYAPSIKAKFPA------DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ 248
Query: 332 EITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF-NV 390
                +   +        L I +V   D   Y C A N  G  + +  +II   P + +V
Sbjct: 249 TSKWLSSEPL--------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV 300
Query: 391 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE-RHAILTIR 449
                DT   D G ++      +G P+P + W RD + + S     V   E R + L + 
Sbjct: 301 ---ITDTEA-DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLE 356
Query: 450 DASNVDTAPYRVVAENDLGMDSAIVKIQI 478
                D+  Y+ VAEN  G   A  ++ +
Sbjct: 357 -----DSGMYQCVAENKHGTVYASAELTV 380

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	591
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-103
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	9e-49
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	8e-35
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-21
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-83
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-77
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-45
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-28
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-64
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	8e-16
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-09
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-07
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	9e-63
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	4e-31
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	1e-28
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	3e-27
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-57
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-26
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-13
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-09
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-05
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-57
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-39
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	8e-23
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-17
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-56
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-44
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-40
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-06
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	7e-51
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-18
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	4e-50
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	5e-24
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	7e-24
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	2e-21
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	2e-18
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	5e-49
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	8e-24
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	1e-21
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	3e-21
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	8e-19
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	2e-48
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	2e-20
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	4e-18
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-48
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-46
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-11
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-09
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-08
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-47
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	5e-29
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	7e-16
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	8e-10
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-42
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-41
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-38
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-37
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-27
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-27
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-24
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-13
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	7e-42
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-33
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-06
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-41
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-39
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-31
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-30
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-40
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-24
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	6e-05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-40
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	7e-15
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	7e-06
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	8e-40
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	1e-34
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	2e-19
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	9e-19
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	3e-18
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	3e-14
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-39
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-31
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-26
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-26
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-07
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-04
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	3e-39
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	1e-22
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	2e-21
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	2e-17
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-39
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-23
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-20
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-20
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-12
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-08
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	9e-39
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-30
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-22
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-05
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-38
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	9e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-38
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-33
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-05
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-04
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-37
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-23
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-04
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-37
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-20
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-05
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-37
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-35
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-11
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-09
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-08
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-36
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	8e-20
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-12
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-11
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-11
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-36
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-25
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-24
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-22
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	7e-05
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	3e-35
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	4e-34
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	2e-28
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-34
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-29
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-24
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-34
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-25
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-24
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-21
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-04
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-04
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-34
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-27
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-06
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	3e-34
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	8e-18
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	3e-15
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	5e-13
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-34
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	7e-20
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	8e-11
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-05
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-33
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	8e-27
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-23
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-04
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	3e-33
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	9e-27
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	6e-24
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-33
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	6e-25
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-24
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-21
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-33
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-18
2crm_A	120	Fibronectin type-III domain containing protein 3A;	5e-33
2crm_A	120	Fibronectin type-III domain containing protein 3A;	7e-31
2crm_A	120	Fibronectin type-III domain containing protein 3A;	7e-24
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	5e-33
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	5e-15
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	5e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-32
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	9e-30
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-32
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-32
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-18
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	9e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-07
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-06
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-32
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-26
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-32
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-19
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-04
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	1e-31
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	1e-30
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	1e-27
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	1e-31
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	8e-31
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	5e-26
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	1e-31
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	2e-30
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	4e-26
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-31
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-25
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-19
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-19
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	4e-31
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	1e-30
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	5e-27
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	6e-23
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	7e-17
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	7e-16
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	1e-11
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	4e-31
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	7e-31
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	8e-28
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	6e-31
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-16
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-09
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-31
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	7e-17
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-30
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-18
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-07
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	2e-30
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	4e-29
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	1e-24
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	4e-30
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	8e-13
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	2e-12
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	3e-10
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	3e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-30
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-26
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-26
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-24
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-23
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-18
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-04
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	4e-30
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	2e-16
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	3e-15
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	3e-12
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	7e-30
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-04
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	9e-30
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-26
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	1e-24
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	9e-30
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-26
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-23
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-05
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	1e-29
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	6e-29
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	2e-28
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-29
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	7e-17
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-05
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-29
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-21
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	2e-29
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	9e-17
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	1e-15
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-29
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	9e-18
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	6e-29
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-27
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	8e-25
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	5e-24
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	6e-29
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-17
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	6e-06
2crz_A	110	Fibronectin type-III domain containing protein 3A;	1e-28
2crz_A	110	Fibronectin type-III domain containing protein 3A;	3e-27
2crz_A	110	Fibronectin type-III domain containing protein 3A;	9e-23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-28
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-16
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-08
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	1e-28
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	7e-27
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	1e-24
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-28
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	7e-12
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	5e-10
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-09
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-28
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	8e-17
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-10
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-28
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-28
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-17
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-09
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	6e-28
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-18
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-14
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	6e-28
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	4e-23
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	3e-20
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	1e-27
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	2e-22
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	7e-21
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-27
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-24
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-18
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	1e-27
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	3e-26
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	3e-21
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-27
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-15
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-07
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	2e-27
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	2e-15
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	3e-06
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	3e-27
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	1e-20
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-12
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	7e-12
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	3e-08
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	7e-27
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	5e-25
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	5e-22
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	8e-27
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-15
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	5e-06
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	9e-27
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	9e-22
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-26
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-25
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-17
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-04
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-26
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-13
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	6e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-26
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-23
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-06
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-26
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-18
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	3e-26
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	1e-18
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	1e-17
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	3e-26
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	1e-25
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	3e-17
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	8e-15
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	1e-13
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	8e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-26
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-17
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-14
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-26
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-14
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-08
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	5e-26
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-16
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-07
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-26
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-17
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-25
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-15
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	2e-25
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	2e-25
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	9e-24
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-25
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	7e-16
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	6e-08
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	5e-25
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	3e-20
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	9e-16
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	7e-25
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	8e-14
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	6e-10
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	7e-25
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-15
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-10
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-24
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-24
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-23
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-24
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-15
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-04
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	7e-24
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-19
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-12
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	8e-24
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-20
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-11
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	1e-23
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	6e-12
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	8e-12
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	7e-05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-23
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	7e-10
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-05
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-23
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	8e-23
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-15
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-23
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-10
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-05
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	6e-23
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	1e-21
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	2e-16
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	7e-23
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	7e-12
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	8e-23
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-10
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	5e-08
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	8e-23
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	3e-13
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-22
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-12
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-07
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	2e-22
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	1e-18
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	3e-16
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	2e-22
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	3e-20
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	2e-18
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-22
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-11
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	5e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-22
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	8e-10
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	5e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-22
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-05
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	4e-22
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-13
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	9e-22
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-12
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-21
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-10
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-21
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-20
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	7e-06
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	2e-21
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	6e-21
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	5e-20
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-21
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-14
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-21
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-10
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	5e-21
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-15
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-21
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-12
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-05
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	7e-21
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	2e-20
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	5e-19
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	2e-20
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	2e-20
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	2e-13
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-20
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-09
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-20
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-05
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	3e-20
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	3e-15
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	5e-14
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-20
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-20
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-11
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	9e-20
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-07
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-19
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-07
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	4e-04
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-19
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-19
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-19
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-13
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-06
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-19
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-10
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	6e-07
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	2e-19
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	5e-17
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	1e-16
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	5e-19
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	7e-10
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	8e-06
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	6e-19
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	7e-11
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	7e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	8e-19
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	9e-11
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	9e-19
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-09
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-04
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-18
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-16
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-18
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-04
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	1e-18
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	3e-16
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	3e-16
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-18
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-14
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	9e-05
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-18
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-18
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-18
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-07
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-18
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	9e-16
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-18
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-12
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-18
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-11
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-04
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	4e-18
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	1e-15
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	2e-14
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	9e-18
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	7e-09
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-17
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-17
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-17
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-10
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	9e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-17
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-14
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-17
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-04
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	5e-17
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	6e-13
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	1e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-17
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	8e-10
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-04
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	9e-17
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	4e-14
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	2e-13
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	1e-16
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	9e-16
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	7e-14
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	1e-08
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-16
2erj_C	247	Cytokine receptor common gamma chain; immune syste	2e-16
2erj_C	247	Cytokine receptor common gamma chain; immune syste	6e-11
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-16
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-08
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-16
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	9e-08
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	3e-16
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	1e-12
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	1e-10
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	3e-16
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	2e-14
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	3e-12
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	3e-16
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	4e-07
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	5e-04
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	4e-16
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	2e-15
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	2e-13
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-16
1he7_A	126	High affinity nerve growth factor receptor; transf	9e-14
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-07
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	7e-16
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	1e-08
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	8e-07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-15
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	8e-10
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-15
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-14
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-06
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	5e-15
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-13
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-05
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	6e-15
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	4e-12
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	1e-09
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	7e-15
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	1e-14
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	2e-12
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	5e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-14
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-04
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	1e-14
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	2e-10
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	8e-09
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-14
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-14
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	2e-14
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	4e-14
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	9e-11
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	2e-14
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	6e-12
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	4e-09
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	2e-14
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	4e-05
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	5e-04
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	2e-14
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	8e-14
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	2e-07
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	6e-06
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	1e-05
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-14
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	5e-08
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-07
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	3e-14
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	2e-13
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	1e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-14
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	5e-10
2ens_A	96	Advanced glycosylation END product-specific recept	4e-14
2ens_A	96	Advanced glycosylation END product-specific recept	6e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-14
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	9e-05
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	5e-14
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	7e-14
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	1e-10
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	6e-14
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	4e-06
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	7e-14
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	2e-11
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	2e-11
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	7e-14
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	2e-13
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	1e-11
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	7e-14
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	8e-10
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	8e-09
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	2e-05
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	3e-05
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	9e-14
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	2e-06
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	1e-13
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	4e-12
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	1e-11
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	1e-13
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	2e-13
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	1e-10
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	1e-13
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	5e-10
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	3e-09
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	2e-13
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	4e-13
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	4e-12
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	2e-13
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	2e-11
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	6e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-13
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	8e-08
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	3e-13
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	1e-11
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	5e-11
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	3e-13
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	4e-12
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	1e-10
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	4e-13
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	7e-13
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	2e-10
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	4e-13
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	2e-11
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	3e-11
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	2e-10
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	3e-06
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	6e-13
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	8e-13
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	6e-12
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	7e-13
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	3e-10
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	3e-06
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	1e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	8e-13
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-08
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-12
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-08
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-12
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-09
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	2e-12
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	8e-12
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	8e-12
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	4e-12
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	4e-11
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	7e-11
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	6e-12
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	2e-09
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	1e-08
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	9e-12
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	5e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	9e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-10
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	1e-11
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	2e-10
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	1e-11
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	5e-06
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	5e-05
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	1e-11
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	4e-09
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	1e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-11
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	7e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
1y6k_R	214	Interleukin-10 receptor alpha chain; helix bundle,	2e-11
1y6k_R	214	Interleukin-10 receptor alpha chain; helix bundle,	6e-04
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	3e-11
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	1e-10
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	3e-09
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	5e-11
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	2e-09
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	8e-11
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	8e-07
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	1e-10
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	3e-09
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	2e-10
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	4e-04
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	3e-10
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	5e-10
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	5e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-06
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	4e-10
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	1e-07
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	2e-06
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	4e-10
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	2e-05
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	2e-09
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	1e-08
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	2e-07
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	1e-06
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	3e-06
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	1e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-09
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-09
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	2e-09
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	2e-06
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	6e-04
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	3e-09
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	6e-07
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	6e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	7e-09
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	8e-09
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	1e-08
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	1e-08
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	8e-08
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	1e-07
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	2e-08
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	4e-08
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	7e-07
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	2e-08
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	1e-07
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	3e-07
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	2e-08
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	8e-08
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	2e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-08
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	7e-04
3og6_B	226	Interleukin 28 receptor, alpha (interferon, lambd	5e-08
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	6e-08
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	4e-07
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	5e-07
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-08
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	1e-07
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	1e-06
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	2e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-07
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	3e-07
3dlq_R	211	Interleukin-22 receptor subunit alpha-1; cytokine-	3e-07
3dlq_R	211	Interleukin-22 receptor subunit alpha-1; cytokine-	5e-04
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	3e-07
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	1e-06
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	1e-06
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	4e-07
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	3e-05
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	3e-04
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	5e-07
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	6e-07
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	1e-06
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	1e-06
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	9e-07
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	2e-06
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	1e-06
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-04
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	1e-06
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	2e-04
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	2e-06
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	2e-06
2dle_A	104	Receptor-type tyrosine-protein phosphatase ETA; pr	2e-06
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	2e-06
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	8e-06
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	7e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-06
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	1e-05
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	3e-06
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	3e-05
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	2e-04
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	3e-06
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	1e-05
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	2e-04
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	3e-06
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	1e-05
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	6e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-05
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-05
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	4e-05
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	8e-05
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	1e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	8e-05
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	2e-04
2csp_A	130	RIM-BP2, RIM binding protein 2; FN3 domain, struct	4e-04
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	5e-04
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	5e-04
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	6e-04

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  313 bits (803), Expect = e-103
 Identities = 106/291 (36%), Positives = 144/291 (49%), Gaps = 5/291 (1%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF--AEGD 346
            A AP     LRN N     NA   C +TG PKP + W +  +EI      +     +G 
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTA--YFDKGE 404
            + LII SV   DA  Y  RA N+GG  S  A L +    K ++P         +  +GE
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120

Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA-ILTIRDASNVDTAPYRVVA 463
            V +KIPF+G P P ITW +  ++I++ GH+ V  +     ++        D   Y V A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 464 ENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH 523
           +N  G+D   V++ ++D PDPP+   V D+  DS+ L W  P  DGGS ITNYIVEK   
Sbjct: 181 KNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCAT 240

Query: 524 PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
               W+RVG  R T   +  L     Y+FRV AEN +G S PS  S+   T
Sbjct: 241 TAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTIT 291

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  171 bits (434), Expect = 9e-49
 Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 5/197 (2%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDY-IIIFIKEIRK 60
             A++   G+   +KI ++G     ++  K   ++ ++  ++  V   +  ++F   + +
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER 170

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
           +DAG Y V   N  G    T  +++  +P PP G   VS++++ +  L W  P  DGG K
Sbjct: 171 KDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGV-KVSDVSRDSVNLTWTEPASDGGSK 229

Query: 121 VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
           +T+Y+VE+   +   W+ +     +T + V  L     Y F V+A N+ G+  P E   P
Sbjct: 230 ITNYIVEKCATTAERWLRVG-QARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEP 288

Query: 181 IKAKSPYDKPSPPGIPV 197
              K    K        
Sbjct: 289 TITKED--KTRAMNYDE 303

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  132 bits (334), Expect = 8e-35
 Identities = 67/306 (21%), Positives = 109/306 (35%), Gaps = 30/306 (9%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGR-VVQSDDRFKFTVLDDYI-IIFIKEIR 59
              L +    N  +     G     V   + G+ ++    +++          + I  + 
Sbjct: 11  LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 70

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINI---TGLPGPPI--GPLDVSEITKHT----CTLHW 110
            +DA  Y V  +N  GSVSGT ++ +     +  P    G   V  +             
Sbjct: 71  DDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG 130

Query: 111 NPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG 170
            P        +T    +    +  H+  I T    +     G+       + V A N  G
Sbjct: 131 KPD-----PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185

Query: 171 MGPPLEGINPIKAK---SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID 227
           +          +        D P PP    V+ V  D VNL+W +P  DGGS+I  Y ++
Sbjct: 186 I---------DQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVE 236

Query: 228 KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
           K    ++ W RV       ++  + NL     Y+FRV A+N+ GLS PS  S     K+ 
Sbjct: 237 KCATTAERWLRVGQ--ARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKED 294

Query: 288 MAAKAP 293
                 
Sbjct: 295 KTRAMN 300

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 93.7 bits (233), Expect = 3e-21
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNA 310
           I ++ +     ++V A N+ G     S + S++++ P     P+ +  +   +A++    
Sbjct: 66  IASVTDDDATVYQVRATNQGG---SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122

Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD-TYTLIINSVYGVDADEYVCRAVN 369
             +   +G P P I+W KG   I  +  + +      T  +  N V   DA  YV  A N
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182

Query: 370 KGGVKSTKAELIIMTAPKFNVPPR 393
           + G+     EL +   P    PPR
Sbjct: 183 RFGIDQKTVELDVADVPD---PPR 203

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  263 bits (675), Expect = 6e-83
 Identities = 63/287 (21%), Positives = 108/287 (37%), Gaps = 7/287 (2%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEI 58
                Y  EG+   +      + P  +   ++  V+ + +    K       +I+ I   
Sbjct: 106 NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPT 165

Query: 59  RKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGG 118
              D G Y    +N  G+    + + +  +P  P G   + E+++ T  + +N P   GG
Sbjct: 166 SDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGG 224

Query: 119 LKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
           + + HY V+ ++++   W  + +    T  ++  L     Y   V AVN  G G   +  
Sbjct: 225 VPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK-- 282

Query: 179 NPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQR 238
             I    P  +PSPP I       G    LS  K  DDGG+ I  Y +       +    
Sbjct: 283 IEIFQTLPVREPSPPSIHGQP-SSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWL 340

Query: 239 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
                     I + +L     YE ++ A N  G S P+    S+  K
Sbjct: 341 EKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 387

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  249 bits (638), Expect = 2e-77
 Identities = 69/289 (23%), Positives = 108/289 (37%), Gaps = 13/289 (4%)

Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT-------PSARHHIFAEGDTY 348
           I+ L+N    +N      C   G P P I+W +     T          R  +  +  + 
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
           +L I  V   D+  Y C A ++ G       L I  APKF          Y  +G  + +
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQT---IYYSWEGNPINI 120

Query: 409 KIPFTGYPKPKITWYRDNEVI--ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
                  P   I W RD  V+  ++  +    ++ R  IL I   S+ D   Y   A N 
Sbjct: 121 SCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180

Query: 467 LGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
           +G       + ++D P  P    + ++   +  + +  P   GG  I +Y V+ +E    
Sbjct: 181 IGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASE 240

Query: 527 SWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            W  V  +   T + +  L P   YE RV A N  G+ D S      T 
Sbjct: 241 IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL 289

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  164 bits (418), Expect = 1e-45
 Identities = 55/343 (16%), Positives = 96/343 (27%), Gaps = 42/343 (12%)

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNA 310
           I ++       +   A +  G       S  + I+       P+ I       + + +  
Sbjct: 67  IKDVKLSDSGRYDCEAASRIG---GHQKSMYLDIEYA-----PKFISNQTIYYSWEGNPI 118

Query: 311 QFQCTITGCPKPTISWLKGSREITPS--ARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 368
              C +   P  +I W +    +          ++ G    L I      D   Y C A 
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178

Query: 369 NKGGVKSTKAELIIMTAPKFNVPPRFRDTA-----------YFDKGENVVVKIPFTGYPK 417
           N  G +  +  L +   P      +  + +               G       P   Y  
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGV------PIHHY-- 230

Query: 418 PKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM----DSAI 473
                 ++     S     V +     ++ + +     T   RV A N  G        I
Sbjct: 231 --QVDVKEV---ASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEI 285

Query: 474 VKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGN 533
            +      P PP     +     S  L       DGG+ I  YIV+ R            
Sbjct: 286 FQTLPVREPSPPS-IHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKK 343

Query: 534 TRF--TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            +     + +  L     YE ++ A N  G S+P+     +  
Sbjct: 344 VQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPP 386

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  116 bits (293), Expect = 1e-28
 Identities = 60/363 (16%), Positives = 105/363 (28%), Gaps = 61/363 (16%)

Query: 36  VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGP 95
              D R +         + IK+++  D+G Y    ++  G    +  ++I   P      
Sbjct: 48  KSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQ 107

Query: 96  LDVSEITKHT----CTLHWNPP-----KYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
                   +     C +  NPP     + D                    +   +T    
Sbjct: 108 TIYYSWEGNPINISCDVKSNPPASIHWRRDK---------LVLPAKNTTNLKTYSTGRKM 158

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP---YDKPSPPGIPVVTQVGG 203
              +   ++     ++  A N  G             +      D PS P    + ++  
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGT---------RFQEYILALADVPSSPYGVKIIELSQ 209

Query: 204 DFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFR 263
               +S++KP   GG  I  Y +D  EV S+ W+ V       + + + NL     YE R
Sbjct: 210 TTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH-GVQTMVVLNNLEPNTTYEIR 268

Query: 264 VYAQNEAGLSLPSSASNSVQIKDPMAA-KAPEIIVPLRNANAIQ-------NHNAQFQCT 315
           V A N  G    S     +    P+     P I     +  + +       +  A     
Sbjct: 269 VAAVNGKGQGDYSKI--EIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAP---- 322

Query: 316 ITG-----CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370
           I         K         +++  +  H I        L     Y     E    A N+
Sbjct: 323 ILEYIVKYRSKDKEDQWL-EKKVQGNKDHIILEH-----LQWTMGY-----EVQITAANR 371

Query: 371 GGV 373
            G 
Sbjct: 372 LGY 374

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  208 bits (531), Expect = 2e-64
 Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 1/195 (0%)

Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT 347
           M+ +AP I   +++        AQ  C I G P P I W +  +E+  S ++ + ++G T
Sbjct: 3   MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
           +TL + +    D   Y C A N+ G   T ++L++   P+F+     ++  Y   G  + 
Sbjct: 63  HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122

Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASN-VDTAPYRVVAEND 466
           + + + G P P +TW+   +++++  +  +E +E +  L +++         Y+V   N 
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182

Query: 467 LGMDSAIVKIQISDR 481
            G   AI+ ++I D+
Sbjct: 183 FGTVDAILDVEIQDK 197

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 75.1 bits (185), Expect = 8e-16
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
           AP      +         GE   +     G P P I WYR  + +     + + +  R  
Sbjct: 7   APGIRKEMK---DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH 63

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
            LT+      D   Y  +A N++G      K+ +   P       +++
Sbjct: 64  TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKE 111

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-R 59
           +    Y   G   ++ + Y G     ++     +++Q+ +       + Y  + +K + R
Sbjct: 109 LKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQR 168

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINIT 86
           K  AG Y V LSN  G+V     + I 
Sbjct: 169 KTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 12/77 (15%), Positives = 28/77 (36%)

Query: 26  EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
           ++   + G+ +    ++K +       + +    +ED G YT   +N  G V  +  + +
Sbjct: 38  DIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97

Query: 86  TGLPGPPIGPLDVSEIT 102
              P    G     +  
Sbjct: 98  QATPQFHPGYPLKEKYY 114

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  204 bits (521), Expect = 9e-63
 Identities = 81/198 (40%), Positives = 112/198 (56%), Gaps = 6/198 (3%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           PGPP     V E+TK + TL W+PP  DGG K+ +Y+VE+R+ +   +  ++T CH T++
Sbjct: 6   PGPPQDLK-VKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSW 64

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNL 208
            V  L EG  Y F V+A NE G+G P E     ++    ++P PPG   +  V  + V+L
Sbjct: 65  KVDQLQEGCSYYFRVLAENEYGIGLPAE---TAESVKASERPLPPGKITLMDVTRNSVSL 121

Query: 209 SWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN 268
           SW+KP  DGGSRI GY ++    GSD W          ++  I  LI+G +Y FRV AQN
Sbjct: 122 SWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT--VKVTEATITGLIQGEEYSFRVSAQN 179

Query: 269 EAGLSLPSSASNSVQIKD 286
           E G+S P   S  V  KD
Sbjct: 180 EKGISDPRQLSVPVIAKD 197

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  118 bits (299), Expect = 4e-31
 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 459 YRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN 515
           +RV+AEN+ G+         ++ S+RP PP   T+ D+  +S++L W  P  DGGS I  
Sbjct: 77  FRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILG 136

Query: 516 YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           YIVE +      W      + T   ITGL  G +Y FRV A+N  G SDP   S  +  
Sbjct: 137 YIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIA 195

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  112 bits (281), Expect = 1e-28
 Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTM 539
           D P PPQ   V+++   S+ L W  P+ DGGS I NYIVEKRE    ++  V      T 
Sbjct: 4   DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63

Query: 540 A-ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
             +  L  G  Y FRV AEN YG   P+ T++ +  
Sbjct: 64  WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKA 99

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  108 bits (271), Expect = 3e-27
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
           D P PP    V +V    V L+WD PL DGGS+I+ Y ++K E    A+  V       S
Sbjct: 4   DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63

Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
              +  L EG  Y FRV A+NE G+ LP+  + SV+  + 
Sbjct: 64  -WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER 102

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  190 bits (485), Expect = 1e-57
 Identities = 64/197 (32%), Positives = 92/197 (46%), Gaps = 5/197 (2%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF--AEGD 346
            A AP     LRN N     NA   C +TG PKP + W +  +EI      +     +G 
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD--TAYFDKGE 404
            + LII SV   DA  Y  RA N+GG  S  A L +    K ++P         +  +GE
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120

Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILT-IRDASNVDTAPYRVVA 463
            V +KIPF+G P P ITW +  ++I++ GH+ V  +     L         D   Y V A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 464 ENDLGMDSAIVKIQISD 480
           +N  G+D   V++ ++D
Sbjct: 181 KNRFGIDQKTVELDVAD 197

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  105 bits (265), Expect = 2e-26
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 320
            ++V A N+ G     S + S++++ P     P+ +  +   +A++      +   +G P
Sbjct: 76  VYQVRATNQGGSV---SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP 132

Query: 321 KPTISWLKGSREITPSARHHIFAEGDTYT-LIINSVYGVDADEYVCRAVNKGGVKSTKAE 379
            P I+W KG   I  +  + +       + +  N V   DA  YV  A N+ G+     E
Sbjct: 133 DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192

Query: 380 LII 382
           L +
Sbjct: 193 LDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH--VETSER 442
           AP F    R           N  +    TG+PKP + WYR  + I + G  +   E    
Sbjct: 4   APHFKEELR---NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDS--AIVKIQISDRPDPPQF 487
           +  L I   ++ D   Y+V A N  G  S  A +++++  +   P+ 
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT 107

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD-YIIIFIKEIRK 60
             A++   G+   +KI ++G     ++  K   ++ ++  ++  V      ++F   + +
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER 170

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINIT 86
           +DAG Y V   N  G    T  +++ 
Sbjct: 171 KDAGFYVVCAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 26  EVSLTKNGR-VVQSDDRFKFTVLDD-YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83
            V   + G+ ++    +++       Y  + I  +  +DA  Y V  +N  GSVSGT ++
Sbjct: 35  IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94

Query: 84  NITGLP 89
            +    
Sbjct: 95  EVEVPA 100

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  191 bits (487), Expect = 1e-57
 Identities = 49/214 (22%), Positives = 75/214 (35%), Gaps = 12/214 (5%)

Query: 367 AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 426
           A       +       M APK   P       Y  +G  V +      YP   I+W+RD 
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQGPV----AVYTWEGNQVNITCEVFAYPSATISWFRDG 56

Query: 427 EVIESGGHFHV--ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDP 484
           +++ S  + ++    +   + L +   S  D   Y   A N +G +S    +  +D P  
Sbjct: 57  QLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSS 116

Query: 485 PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-----GNTRFTTM 539
           P    VE     +  + +  P   GG  I  Y  E R      W          +    +
Sbjct: 117 PSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIV 175

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            I GL P   Y  R+ A N  G  + S  S+  T
Sbjct: 176 TIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  143 bits (361), Expect = 1e-39
 Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 8/181 (4%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL--DDYIIIFIKEIR 59
           P A+Y  EG+   +           +S  ++G+++ S +     +        + +    
Sbjct: 25  PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDS 84

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGL 119
           + D G+Y     N  G  S  F +     P  P   +D  E    T  + ++ P+  GG+
Sbjct: 85  ENDFGNYNCTAVNRIGQESLEFILVQADTPSSP--SIDQVEPYSSTAQVQFDEPEATGGV 142

Query: 120 KVTHYVVERRDIS----MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPL 175
            +  Y  E R +        W        +    + GL     Y   + A+N  G+G   
Sbjct: 143 PILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEIS 202

Query: 176 E 176
            
Sbjct: 203 A 203

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 96.0 bits (239), Expect = 8e-23
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI---C 244
           D PS P I  V         + +D+P   GG  I  Y  +   VG + W           
Sbjct: 112 DTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170

Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
               + I  L     Y  R+ A N  GL   S+AS 
Sbjct: 171 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 206

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 32/211 (15%)

Query: 275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 334
            +++S  V     M A  P++  P       + +     C +   P  TISW +  + + 
Sbjct: 4   AAASSALVPRGSHMYA--PKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLP 60

Query: 335 PSARHH--IFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
            S   +  I+       L +      D   Y C AVN+ G +S +  L+    P  + P 
Sbjct: 61  SSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTP--SSPS 118

Query: 393 RFRDTAYFDKGENVVVKI---------PFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
             +   Y        V+          P   Y   K  W    E +     +  + +   
Sbjct: 119 IDQVEPY---SSTAQVQFDEPEATGGVPILKY---KAEWRAVGEEVWHSKWYDAKEASME 172

Query: 444 AILTIRDASNVDTAPY-----RVVAENDLGM 469
            I+TI         P      R+ A N  G+
Sbjct: 173 GIVTIVGLK-----PETTYAVRLAALNGKGL 198

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  199 bits (508), Expect = 1e-56
 Identities = 102/610 (16%), Positives = 208/610 (34%), Gaps = 93/610 (15%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
              +    G+   ++    G   + ++  K    ++S   +K    ++   + I ++   
Sbjct: 12  LEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHS 71

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITGLPGPPI---GPLDVSEITKHT----CTLHWNPP- 113
           D G+YT    NS G+V+ +  + I     PP       DV E         C ++ + P 
Sbjct: 72  DVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPL 131

Query: 114 ----KYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNEN 169
                 DG L     + +  ++        S   +  T  +    +     ++  A N  
Sbjct: 132 QVSWYKDGEL-----LKDDANLQ------TSFIHNVATLQILQTDQSHVGQYNCSASNPL 180

Query: 170 G---MGPPL----EGINPIKAKSPYDKPSPPGIPVV--TQVGGD-FVNLSW---DKPLDD 216
           G       L      + P     P       G        V G   + ++W   ++ +  
Sbjct: 181 GTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP 240

Query: 217 GGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
           GG          +++                 + +  + +G   ++  YA N AG     
Sbjct: 241 GG---------NYKMTLVENTAT---------LTVLKVTKGDAGQYTCYASNVAG---KD 279

Query: 277 SASNSVQIKDPMAAKAPEIIVPLR-NANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
           S S  + +++P     P  I  L  +    Q+ + +++C I G P+  + W K   EI  
Sbjct: 280 SCSAQLGVQEP-----PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 334

Query: 336 SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFR 395
           S++  +        L + ++   D+ +Y C A N  G  S+   L +   P F   P   
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 394

Query: 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 455
           +T    KG +V ++    G P  +++W++D   + SG  + + +      + I +  + D
Sbjct: 395 ETL---KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSAD 451

Query: 456 TAPYRVVAENDLGMDSAIVKIQISDRP---DPPQFPTV----------EDIGHDSLALVW 502
              Y+  A ND+G D+ +  I +   P         +              G + +++ W
Sbjct: 452 IGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAW 511

Query: 503 RAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR 562
                D G  +             +     +    T+  +   P +  ++    +N  G 
Sbjct: 512 FK---DKGEIVRES---------DNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGT 559

Query: 563 SDPSTTSDLI 572
                 + L 
Sbjct: 560 Q--ECFATLS 567

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  163 bits (415), Expect = 8e-44
 Identities = 47/221 (21%), Positives = 86/221 (38%), Gaps = 12/221 (5%)

Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 320
           ++   A N AG +   S+S S+++K+P     P           ++  +   +C + G P
Sbjct: 361 DYTCEAHNAAGSA---SSSTSLKVKEP-----PVFRKKPHPVETLKGADVHLECELQGTP 412

Query: 321 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
              +SW K  RE+    ++ I +E    ++ I +V   D  EY C+A N  G  +    +
Sbjct: 413 PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI 472

Query: 381 IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-ESGGHFHVET 439
            +   P+F        T     GE V ++    G     + W++D   I     +  +  
Sbjct: 473 TLKAPPRFVKKLSDISTV---VGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISY 529

Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
           SE  A L    A   +   Y    +N+ G       + + +
Sbjct: 530 SENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  154 bits (392), Expect = 1e-40
 Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 6/202 (2%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
           A + P  I PL +  A        QC + G P+  I+W K   ++  +  + +  + +  
Sbjct: 2   AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD---TAYFDKGEN 405
           +L+IN V   D  EY C+A N  G  ++ A L+I       +PP F       +   G  
Sbjct: 62  SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK---LPPSFARKLKDVHETLGFP 118

Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
           V  +    G    +++WY+D E+++   +         A L I          Y   A N
Sbjct: 119 VAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178

Query: 466 DLGMDSAIVKIQISDRPDPPQF 487
            LG  S+  K+ +S+   PP F
Sbjct: 179 PLGTASSSAKLTLSEHEVPPFF 200

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG-RVVQSDDRFKFTVLDDYIIIFIKEIRK 60
            + +    G+  +++    G +P+ V+  K+   +V+  D    +  ++   +       
Sbjct: 484 LSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP 543

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINI 85
            +AG YT  + N +G+     T+++
Sbjct: 544 ANAGKYTCQIKNEAGTQECFATLSV 568

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  183 bits (466), Expect = 7e-51
 Identities = 82/582 (14%), Positives = 144/582 (24%), Gaps = 54/582 (9%)

Query: 19  YAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY-TVNLSNSSGSV 77
           Y       +    N   +  +      +      +   +I   +      +         
Sbjct: 34  YFHVNANYIVWKTNHFTIPKEQYTI--INRTASSVTFTDIASLNIQLTCNILTFGQLEQN 91

Query: 78  SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI 137
               TI     P  P   L             W+  + +  L+ T++ ++    +     
Sbjct: 92  VYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGR-ETHLE-TNFTLKSEWATHKFAD 148

Query: 138 C-ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIP 196
           C        +  +             V A N  G             K    KP+PP   
Sbjct: 149 CKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYK---VKPNPPHNL 205

Query: 197 VVTQV--GGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS--QINIP 252
            V         + L+W  P       I  Y I      +  W ++     A +     + 
Sbjct: 206 SVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQ 264

Query: 253 NLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQF 312
           +L    +Y FR+    E G    S  S             P             +     
Sbjct: 265 DLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR--PSKAPSFWYKIDPSHTQGYR 322

Query: 313 QCTITGCPKPTISW--------LKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYV 364
              +     P            +  +R  +    + +    +   L +N       D Y+
Sbjct: 323 TVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTV----NATKLTVNLTN----DRYL 374

Query: 365 CR--AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV--KIPFTGYPKPKI 420
                 N  G KS  A L I         P     A+      + V    P     K  +
Sbjct: 375 ATLTVRNLVG-KSDAAVLTIPACDFQATHPVMDLKAFPKDNM-LWVEWTTPRESVKKYIL 432

Query: 421 TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAENDLGM-DSAIV 474
            W   ++       +  E    H      +      A        V      G      +
Sbjct: 433 EWCVLSDKAPCITDWQQEDGTVHRTYLRGN-----LAESKCYLITVTPVYADGPGSPESI 487

Query: 475 KIQIS-DRPDPPQFPTVEDIGHDSLALVWRA-PIWDGGSNITNYIVEKREHPMSSWIRVG 532
           K  +    P        + +G +   L W   P+      I NY +  R    +      
Sbjct: 488 KAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNV 547

Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           ++  T   ++ L+    Y  R+ A    G  D    +   TT
Sbjct: 548 DSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT--FTT 587

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 87.4 bits (216), Expect = 3e-18
 Identities = 21/178 (11%), Positives = 50/178 (28%), Gaps = 14/178 (7%)

Query: 402 KGENVVVK-------IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNV 454
              N           + +       I W  ++  I    +  +  +   + +T  D +++
Sbjct: 17  LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTA--SSVTFTDIASL 74

Query: 455 DTA-PYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNI 513
           +      ++    L  +   + I     P+ P+  +        +   W           
Sbjct: 75  NIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL--E 132

Query: 514 TNYIVEKRE--HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           TN+ ++     H  +      +T  +             E  V AEN  G+      +
Sbjct: 133 TNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 190

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score =  171 bits (435), Expect = 4e-50
 Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 10/198 (5%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS----MPHWICISTTCH 144
           P  P   +D  E    T  + ++ P+  GG+ +  Y  E R +        W        
Sbjct: 9   PSSP--SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 66

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGD 204
           +    + GL     Y   + A+N  G+G             P  +PS P +       G+
Sbjct: 67  EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF--KTQPVREPSAPKLEGQMGEDGN 124

Query: 205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
            + ++  K  DDGGS I+ Y +    + S+ W+           + + +L    +YE  V
Sbjct: 125 SIKVNLIKQ-DDGGSPIRHYLVRYRALSSE-WKPEIRLPSGSDHVMLKSLDWNAEYEVYV 182

Query: 265 YAQNEAGLSLPSSASNSV 282
            A+N+ G S  +      
Sbjct: 183 VAENQQGKSKAAHFVFRT 200

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 99.5 bits (248), Expect = 5e-24
 Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 6/104 (5%)

Query: 475 KIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT 534
            +  +D P  P    VE     +  + +  P   GG  I  Y  E R      W      
Sbjct: 2   PLAQADTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 60

Query: 535 RF-----TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
                    + I GL P   Y  R+ A N  G  + S  S+  T
Sbjct: 61  AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 104

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 98.7 bits (246), Expect = 7e-24
 Identities = 41/219 (18%), Positives = 62/219 (28%), Gaps = 35/219 (15%)

Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
           +  D PS P I  V         + +D+P   GG  I  Y  +   VG + W        
Sbjct: 4   AQADTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 62

Query: 245 APS---QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRN 301
             S    + I  L     Y  R+ A N  GL   S+AS          +          +
Sbjct: 63  EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGED 122

Query: 302 ANAIQ------NHNAQFQCTITG-----CPKPTISWLKGSREITPSARHHI--FAEGDTY 348
            N+I+      +        I           +  W    R  + S    +        Y
Sbjct: 123 GNSIKVNLIKQDDGG---SPIRHYLVRYRALSS-EWKPEIRLPSGSDHVMLKSLDWNAEY 178

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
            + +              A N+ G  S  A  +  TA  
Sbjct: 179 EVYV-------------VAENQQGK-SKAAHFVFRTAAA 203

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 92.2 bits (229), Expect = 2e-21
 Identities = 37/170 (21%), Positives = 57/170 (33%), Gaps = 11/170 (6%)

Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM- 469
           P   Y   K  W    E +     +  + +    I+TI       T   R+ A N  G+ 
Sbjct: 38  PILKY---KAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLG 94

Query: 470 ---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
               ++  K Q    P  P+         +S+ +       DGGS I +Y+V  R    S
Sbjct: 95  EISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALS-S 152

Query: 527 SWIRVGNTRF--TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            W            + +  L    +YE  V AEN  G+S  +        
Sbjct: 153 EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAA 202

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 1/99 (1%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
                          ++  ++      DGG  + HY+V  R +S      I         
Sbjct: 109 EPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHV 167

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
           +++ L    EY  +V+A N+ G       +    A   +
Sbjct: 168 MLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHH 206

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score =  168 bits (427), Expect = 5e-49
 Identities = 39/209 (18%), Positives = 63/209 (30%), Gaps = 16/209 (7%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT------ 142
             PP  P +V+ ++  +  L W  P+ DG   V   V  R      +W   +        
Sbjct: 2   TYPP-TPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60

Query: 143 ------CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI--KAKSPYDKPSPPG 194
                     T  V  L     Y F ++AV  N              +  +  D    P 
Sbjct: 61  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120

Query: 195 IPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA-WQRVNVAICAPSQINIPN 253
           +  + +     V L W    D     I GY+       S   + +  +         I  
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180

Query: 254 LIEGRQYEFRVYAQNEAGLSLPSSASNSV 282
           L     YEF++ + + A  S  S+     
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGR 209

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 98.7 bits (246), Expect = 8e-24
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 11/165 (6%)

Query: 421 TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM-----DSAIVK 475
            W   N+ I  G         +    ++ D     T  +R++A            SA   
Sbjct: 47  NWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFY 106

Query: 476 IQISDRPDP---PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP-MSSWIR- 530
           +Q     DP   P+   +E+    ++ L W          IT Y    R       + + 
Sbjct: 107 LQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKA 166

Query: 531 -VGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            +      +  I  L     YEF++ + +    S+ S      T 
Sbjct: 167 TIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 93.0 bits (231), Expect = 1e-21
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 15/107 (14%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH-PMSSWIRVGNT------ 534
             PP  P V  +  +S+ L W  P  + G  I  + V+ R      +W    +       
Sbjct: 2   TYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60

Query: 535 -------RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                  +  T ++T L P H Y FR+ A      +  S TS     
Sbjct: 61  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 107

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 91.4 bits (227), Expect = 3e-21
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 13/116 (11%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA-WQRVNVAICAPSQ 248
             PP  P VT++  + V L W  P +DG   I  + +    VG    WQ  N  I     
Sbjct: 2   TYPPTPPNVTRLSDESVMLRWMVPRNDGLP-IVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60

Query: 249 IN-----------IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAP 293
                        + +L     Y FR+ A      +  S+ S    ++   A    
Sbjct: 61  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPM 116

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 84.5 bits (209), Expect = 8e-19
 Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 4/111 (3%)

Query: 78  SGTFTINITGLPGPPIGP--LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI-SMP 134
           S  F +       P   P  L++ E ++    LHW+         +T Y    R   S  
Sbjct: 102 SAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAG 161

Query: 135 HWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
            +        H  +F +  L     Y F + + +                +
Sbjct: 162 EYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  178 bits (452), Expect = 2e-48
 Identities = 71/540 (13%), Positives = 142/540 (26%), Gaps = 75/540 (13%)

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGL 119
            E +G      SN  G           G+P  P   L  +E+      + W+   ++  +
Sbjct: 132 NECSGVKKCC-SNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSK-FNISI 189

Query: 120 KVTHYVVERRDISMPH--------WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM 171
           +   YVV+RR     H        W  ++ T  D    +  +   + Y F V AVN +G 
Sbjct: 190 EPVIYVVQRRWNYGIHPSEDDATHWQTVAQT-TDERVQLTDIRPSRWYQFRVAAVNVHGT 248

Query: 172 GPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDF-----VNLSWDKPLDDGGSRIQGYWI 226
                     ++      P  P    +     +      V + WD P +     +  Y +
Sbjct: 249 RGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYKV 307

Query: 227 ------DKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
                     +     +R        + + +  L     Y   + A    G +   SA  
Sbjct: 308 FWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKV 367

Query: 281 SVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH 340
           S+      A    E +V  R          Q +            +  G  ++    +  
Sbjct: 368 SLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT 427

Query: 341 IFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYF 400
                + Y +                A        T    II+    F+   +       
Sbjct: 428 EDPTVNRYHVRWFPEACAHNRTTGSEAS----SGMTHENYIILQDLSFSCKYKVTVQPIR 483

Query: 401 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
            K  +    + FT  P            ++   H  +                       
Sbjct: 484 PKSHSKAEAVFFTTPP---------CSALKGKSHKPIGCL-------------------- 514

Query: 461 VVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEK 520
                    ++  V  ++  +P+      +    + +    W+    +    +T + V  
Sbjct: 515 --------GEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTW 566

Query: 521 RE-----------HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
            E           + + S  ++  +    + +  L P   Y   V      G    +  +
Sbjct: 567 AEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKT 626

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 94.6 bits (234), Expect = 2e-20
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 9/128 (7%)

Query: 455 DTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNIT 514
            +   +  +            +       P +     ++    L + W +   +      
Sbjct: 134 CSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKF-NISIEPV 192

Query: 515 NYIVEKR--------EHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
            Y+V++R        E   + W  V  T    + +T + P   Y+FRV A NV+G    +
Sbjct: 193 IYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFT 252

Query: 567 TTSDLITT 574
             S    +
Sbjct: 253 APSKHFRS 260

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 86.9 bits (214), Expect = 4e-18
 Identities = 40/258 (15%), Positives = 70/258 (27%), Gaps = 45/258 (17%)

Query: 79  GTFTINITGLPGPPIGPLDVSEITKH----TCTLHWNPPKYDGGLKVTHYVVERR----- 129
           G     +      P  PL+V             ++W   +      V  Y V        
Sbjct: 389 GGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPT---VNRYHVRWFPEACA 445

Query: 130 -DISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP--------PLEGINP 180
            + +         T H+   I+Q L+   +Y   V  +               P      
Sbjct: 446 HNRTTGSEASSGMT-HENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALK 504

Query: 181 IKAKSPYD--------------KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI 226
            K+  P                KP       + Q      + SW     +    + G+ +
Sbjct: 505 GKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQV 564

Query: 227 DKHEVGSDAWQ-RVNVAICAPSQIN--------IPNLIEGRQYEFRVYAQNEAGLSLPSS 277
              EV +++ Q  +  +I + SQI         +PNL     Y   V      G    + 
Sbjct: 565 TWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATI 624

Query: 278 ASNSVQIKDPMAAKAPEI 295
            +       P +A    +
Sbjct: 625 KTFRTPELPPSSAHRSHL 642

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  168 bits (428), Expect = 4e-48
 Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 12/219 (5%)

Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNA-NAIQNHNAQFQCTITGC 319
           ++  YA N AG     S S  + +++P     P  I  L  +    Q+ + +++C I G 
Sbjct: 75  QYTCYASNVAG---KDSCSAQLGVQEP-----PRFIKKLEPSRIVKQDEHTRYECKIGGS 126

Query: 320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 379
           P+  + W K   EI  S++  +        L + ++   D+ +Y C A N  G  S+   
Sbjct: 127 PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS 186

Query: 380 LIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET 439
           L +   P F   P   +T    KG +V ++    G P  +++W++D   + SG  + + +
Sbjct: 187 LKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS 243

Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
                 + I +  + D   Y+  A ND+G  + +  I +
Sbjct: 244 ENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  164 bits (417), Expect = 1e-46
 Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 5/196 (2%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
            P   +   + +     +  F+C +TG     I+W K +REI P   + +    +T TL 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64

Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIP 411
           +  V   DA +Y C A N  G  S  A+L +   P+F        +    + E+   +  
Sbjct: 65  VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKL--EPSRIVKQDEHTRYECK 122

Query: 412 FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS 471
             G P+ K+ WY+D   I+    F +   E  A+L + + S  D+  Y   A N  G  S
Sbjct: 123 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182

Query: 472 AIVKIQISDRPDPPQF 487
           +   +++    +PP F
Sbjct: 183 SSTSLKVK---EPPVF 195

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 20/88 (22%), Positives = 45/88 (51%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
          P ++ +  G++   K    G  P++++  K+ R ++    +K T++++   + + ++ K 
Sbjct: 12 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKG 71

Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLP 89
          DAG YT   SN +G  S +  + +   P
Sbjct: 72 DAGQYTCYASNVAGKDSCSAQLGVQEPP 99

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 20/86 (23%), Positives = 38/86 (44%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
           P+ +   +G +  ++    G  P +VS  K+ R ++S  ++K    +    I I  +   
Sbjct: 199 PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA 258

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITG 87
           D G+Y    SN  GS +   +I +  
Sbjct: 259 DIGEYQCKASNDVGSYTCVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 20/109 (18%), Positives = 49/109 (44%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
           +  +  + + ++T+ +    G   ++V   K+   +Q   +F+ + ++   ++ +  +  
Sbjct: 105 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV 164

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
           ED+GDYT    N++GS S + ++ +   P     P  V  +      L 
Sbjct: 165 EDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE 213

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  163 bits (414), Expect = 3e-47
 Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 8/196 (4%)

Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARH--HIFAEG 345
           M  +AP    PL++   ++   A F+  I+G P P +SW +  + I+ S      I    
Sbjct: 1   MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60

Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII---MTAPKFNVPPRFRDTAYFDK 402
               L I +V   ++  Y  +A N  G  ++ AEL++      P F    +   +    +
Sbjct: 61  GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ---SMTVRQ 117

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
           G  V +++  TG P P + +YRD   I+S   F +        L I +A   D+  Y V 
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177

Query: 463 AENDLGMDSAIVKIQI 478
           A N +G  ++  ++ +
Sbjct: 178 ATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  112 bits (283), Expect = 5e-29
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 320
            + + A N +G      A+++ ++        P  +  L++    Q    + Q  +TG P
Sbjct: 77  RYSLKATNGSG-----QATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP 131

Query: 321 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
            P + + +   EI  S    I  EGD Y+L+I   Y  D+  Y   A N  G  ++ AEL
Sbjct: 132 TPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191

Query: 381 II 382
           ++
Sbjct: 192 LV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 75.5 bits (186), Expect = 7e-16
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG--HFHVETSER 442
           AP F  P +        +G     +   +G+P P+++W+RD +VI +       +  S+ 
Sbjct: 5   APTFTQPLQSVVVL---EGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61

Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
            A LTI   +  ++  Y + A N  G  ++  ++ +     PP F
Sbjct: 62  RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF 106

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 57.8 bits (140), Expect = 8e-10
 Identities = 20/84 (23%), Positives = 40/84 (47%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
             ++ + +G   ++++   G     V   ++G  +QS   F+ +   D   + I E   E
Sbjct: 110 LQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE 169

Query: 62  DAGDYTVNLSNSSGSVSGTFTINI 85
           D+G Y+VN +NS G  + T  + +
Sbjct: 170 DSGTYSVNATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 21  GDQPMEVSLTKNGRVVQSDDRFKFTVL--DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
           G    EVS  ++G+V+ +       +   D    + I  + K ++G Y++  +N SG  +
Sbjct: 31  GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT 90

Query: 79  GTFTINITGLPGPPI 93
            T  + +     PP 
Sbjct: 91  STAELLVKAETAPPN 105

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  160 bits (407), Expect = 7e-42
 Identities = 75/329 (22%), Positives = 118/329 (35%), Gaps = 24/329 (7%)

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNA 310
           I ++ +  +  ++ + +N+       SA  S ++K       P I    +        + 
Sbjct: 393 IESVKKEDKGMYQCFVRNDRE-----SAEASAELKLGGRFDPPVIRQAFQEETMEPGPSV 447

Query: 311 QFQCTITGCPKPTISWLKGSREITPSARHHI-----FAEGDTYTLIINSVYGVDADEYVC 365
             +C   G P P ISW    ++I  + R+ +             L I SV+  D   Y C
Sbjct: 448 FLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507

Query: 366 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 425
            A +K GV    A+L +   P      +    A    GE ++V  P  GYP   I W RD
Sbjct: 508 IAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVA----GETLIVTCPVAGYPIDSIVWERD 563

Query: 426 NEVIESGGHFHVETSERHAILTIRDAS-NVDTAPYRVVAENDLGMD---SAIVKIQISDR 481
           N  +       V  +     L I +   N D A Y  VA+N  G     S  V++ +  R
Sbjct: 564 NRALPINRKQKVFPN---GTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR 620

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT--RFTTM 539
             P  F          L L    P  D   NI  + ++ +       I       R + +
Sbjct: 621 IIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNID-WTLDGQAISEDLGITTSRVGRRGSVL 679

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTT 568
            I  +   H   F  +A N+ G    +T 
Sbjct: 680 TIEAVEASHAGNFTCHARNLAGHQQFTTP 708

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  159 bits (403), Expect = 2e-41
 Identities = 99/611 (16%), Positives = 181/611 (29%), Gaps = 97/611 (15%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFT--VLDDYIIIFIKEIR 59
            +           +     G         K                V      + IK+  
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGP----LDVSEITKHTCTLHWNPPKY 115
            ED+G Y   ++NS G  S    + +T      I P    +D       TC    NP K 
Sbjct: 315 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK- 373

Query: 116 DGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPL 175
                V+     +   ++ H         ++   ++ + +  + ++     N+       
Sbjct: 374 ----TVSWM---KDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRNDRES---A 415

Query: 176 EGINPIKAKSPYDKPS--PPGIPVVTQVGGDFV-----------NLSW---DKPLDDGGS 219
           E    +K    +D P           + G                +SW    K + +   
Sbjct: 416 EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDR 475

Query: 220 RIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
              G             Q V V     S +NI ++       ++  A+++ G      A 
Sbjct: 476 YQVG-------------QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG-----VAE 517

Query: 280 NSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARH 339
           +S ++           I  +     +        C + G P  +I W + +R +  + + 
Sbjct: 518 HSAKLN----VYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQ 573

Query: 340 HIFAEGDTYTLIINSVY-GVDADEYVCRAVNKGGVKSTK-AELIIMTAPKFNVPPRFRDT 397
            +F  G   TLII +V    D   Y C A N+ G  +    E+ +M  P+  +P  F + 
Sbjct: 574 KVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI-IPFAFEEG 629

Query: 398 AYFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVE-TSERHAILTIRDASNVD 455
                G+ + +     G   P  I W  D + I             R ++LTI       
Sbjct: 630 -PAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASH 688

Query: 456 TAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDI-------------GHDSLALVW 502
              +   A N  G       + +   P     PT +               G     + W
Sbjct: 689 AGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTW 748

Query: 503 RAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR 562
           +      G     Y    ++   S  IRV      T+ +  +   ++  +   A N  G 
Sbjct: 749 K---KAVGDTPGEY----KDLKKSDNIRVEE---GTLHVDNIQKTNEGYYLCEAINGIGS 798

Query: 563 SDPSTTSDLIT 573
               +   +I+
Sbjct: 799 G--LSAVIMIS 807

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  148 bits (376), Expect = 6e-38
 Identities = 67/454 (14%), Positives = 131/454 (28%), Gaps = 45/454 (9%)

Query: 55  IKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPI--GPLDVSEITKH-----TCT 107
           +   R +    +      + GS +           GP     P +  + +        C 
Sbjct: 3   MPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECK 62

Query: 108 LHWNPP------KYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLF 161
              NP       + DG        + +                    +   +       +
Sbjct: 63  ASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV-------Y 115

Query: 162 HVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRI 221
             +A N+   G  +     ++A       +      V +  G+   +    P        
Sbjct: 116 ACLARNQ--FGSIISRDVHVRAVVAQYYEADVNKEHVIR--GNSAVIKCLIPSFVADFVE 171

Query: 222 QGYWI--DKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQY-EFRVYAQNEAGLSLPSSA 278
              W   ++      A       +    +++I  +     Y  ++   ++        SA
Sbjct: 172 VVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSA 231

Query: 279 S-NSVQIKDPMAAKAPEIIVPLRNAN--AIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
           +   + I +P+++  P+++   +        +      C   G P P   W K     T 
Sbjct: 232 TKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTR 291

Query: 336 SARHHIFAEGDTY--TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
                +         TLII      D+ +Y+C   N  G +S +  L +       + P 
Sbjct: 292 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP 351

Query: 394 FRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASN 453
              T   D G   V    +TG P   ++W +D + I               +L I     
Sbjct: 352 ---TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKK 398

Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
            D   Y+    ND     A  ++++  R DPP  
Sbjct: 399 EDKGMYQCFVRNDRESAEASAELKLGGRFDPPVI 432

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  146 bits (370), Expect = 4e-37
 Identities = 74/527 (14%), Positives = 143/527 (27%), Gaps = 72/527 (13%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-----IK 56
            N +        +++   +G+   E+   ++      D      +  D  ++F       
Sbjct: 46  TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED 105

Query: 57  EIRKEDAGDYTVNLSNSSGSV-SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKY 115
             ++  A  Y     N  GS+ S    +                 I  ++  +    P +
Sbjct: 106 YRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF 165

Query: 116 DGGLKVT-HYVVERRDISMPHWICIS--TTCHDTTFIVQGLTEG-QEYLFHVMAVNENGM 171
                    +  +  +   P                 ++ +        +     +    
Sbjct: 166 VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTG 225

Query: 172 GPPLEG-INPIKAKSPYDKPSPPGIPV-----VTQVGGDFVNL------------SWDKP 213
              L      +    P     P  + +      T  G   + L             W K 
Sbjct: 226 ETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYK- 284

Query: 214 LDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLS 273
             +G +R Q   ++                     + I + +     ++     N  G  
Sbjct: 285 FIEGTTRKQAVVLNDRVKQVSGT------------LIIKDAVVEDSGKYLCVVNNSVG-- 330

Query: 274 LPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI 333
              S    + +  P         +            A F C  TG P  T+SW+K  + I
Sbjct: 331 -GESVETVLTVTAP-----LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI 384

Query: 334 TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII---MTAPKFNV 390
             S             L I SV   D   Y C   N        AEL +      P    
Sbjct: 385 GHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQ 434

Query: 391 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV-----ETSERHAI 445
             +       + G +V +K    G P P+I+W  D + I +   + V        +  + 
Sbjct: 435 AFQ---EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSY 491

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP--DPPQFPTV 490
           L I      D   Y+ +A++ +G+     K+ +   P     +   +
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAI 538

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  117 bits (295), Expect = 1e-27
 Identities = 57/325 (17%), Positives = 102/325 (31%), Gaps = 49/325 (15%)

Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI---T 317
            +   A+N+ G    S  S  V ++   A  A      +   + I+ ++A  +C I    
Sbjct: 114 VYACLARNQFG----SIISRDVHVR---AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFV 166

Query: 318 GCPKPTISWLKGSREI-----TPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRAVNKG 371
                 +SW     E          ++ +   G    L I  V   D    Y CR  ++ 
Sbjct: 167 ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRL 223

Query: 372 G---VKSTKAELIIMTAPKFNVPPRFRDTAYFD-----KGENVVVKIPFTGYPKPKITWY 423
                 S     +++T P  +  P+    A FD         + +  P  GYP P   WY
Sbjct: 224 TGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWY 283

Query: 424 RDNEVIESGGHFHVET--SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
           +  E         +     +    L I+DA   D+  Y  V  N +G +S    + ++  
Sbjct: 284 KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP 343

Query: 482 PDPPQFPTVE--DIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---NTRF 536
                 P  +  D G      V+                        SW++ G       
Sbjct: 344 LSAKIDPPTQTVDFGRP---AVFTCQ------------YTGNPIKTVSWMKDGKAIGHSE 388

Query: 537 TTMAITGLSPGHQYEFRVYAENVYG 561
           + + I  +    +  ++ +  N   
Sbjct: 389 SVLRIESVKKEDKGMYQCFVRNDRE 413

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  116 bits (293), Expect = 1e-27
 Identities = 66/399 (16%), Positives = 131/399 (32%), Gaps = 37/399 (9%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL-----DDYIIIFIK 56
                +  G +  +K    G+   E+S   +G+ + ++DR++         D    + I 
Sbjct: 436 FQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNIT 495

Query: 57  EIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYD 116
            +   D G Y     +  G    +  +N+ GLP         + +   T  +        
Sbjct: 496 SVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-YIRQMEKKAIVAGETLIVT------- 547

Query: 117 GGLKVTHYVV-----ERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM 171
               V  Y +     ER + ++P         + T  I        +  +  +A N+ G 
Sbjct: 548 --CPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605

Query: 172 GPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI-DKHE 230
                    +         +    P      G ++ L    P  D    I   W  D   
Sbjct: 606 SARGSLEVQVMVLPRIIPFAFEEGPAQV---GQYLTLHCSVPGGDLPLNID--WTLDGQA 660

Query: 231 VGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
           +  D     +      S + I  +       F  +A+N AG       +  + +  P   
Sbjct: 661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG---HQQFTTPLNVYVP--- 714

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEG---DT 347
             P  I+   +    Q  +A+ +C   G PKP ++W K   +     +    ++    + 
Sbjct: 715 --PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE 772

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
            TL ++++   +   Y+C A+N  G   +   +I + A 
Sbjct: 773 GTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  106 bits (266), Expect = 3e-24
 Identities = 55/337 (16%), Positives = 94/337 (27%), Gaps = 55/337 (16%)

Query: 262 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAIQNHNAQFQCTITGCP 320
           F   A    G     S + +    D    K P  +  P    +   +  A+ +C  +G P
Sbjct: 14  FAAVALIACG-----SQTLAANPPDA-DQKGPVFLKEPTNRIDFSNSTGAEIECKASGNP 67

Query: 321 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSV------YGVDADEYVCRAVNKGG-V 373
            P I W++                 D   L+            V A  Y C A N+ G +
Sbjct: 68  MPEIIWIRSDGTAVGDVPGLRQISSD-GKLVFPPFRAEDYRQEVHAQVYACLARNQFGSI 126

Query: 374 KSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK---IPFTGYPKPKITWYRDNEVIE 430
            S    +  + A  +              G + V+K     F       ++W+ D E   
Sbjct: 127 ISRDVHVRAVVAQYYEADVNKEHVIR---GNSAVIKCLIPSFVADFVEVVSWHTDEEENY 183

Query: 431 SGGHFHVETSERHAI-----LTIRDASNVDTAP-YRVVAENDLGMD---SAIVKIQISDR 481
                  E   ++ +     L IR+    D    Y+   ++ L  +   SA     +   
Sbjct: 184 FP---GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE 240

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNY-IVEKREHPMSSWIRVG-------- 532
           P     P V  +    +          G S +      +    P+  W +          
Sbjct: 241 PISSAVPKVVSLAKFDMKTY------SGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQA 294

Query: 533 ---NTRFT----TMAITGLSPGHQYEFRVYAENVYGR 562
              N R      T+ I         ++     N  G 
Sbjct: 295 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 72.7 bits (178), Expect = 2e-13
 Identities = 30/253 (11%), Positives = 67/253 (26%), Gaps = 20/253 (7%)

Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAE--LIIMTAPKFNVPPRFRDTAYFDKGENVV 407
           + + +        +   A+   G ++  A         P F   P   +   F       
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEP--TNRIDFSNSTGAE 58

Query: 408 VKIPFTGYPKPKITWYRDN-EVIESGGHFHVETSERHAILTIRDASNVDTAP------YR 460
           ++   +G P P+I W R +   +         +S+    L        D         Y 
Sbjct: 59  IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK--LVFPPFRAEDYRQEVHAQVYA 116

Query: 461 VVAENDLGMD-SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE 519
            +A N  G   S  V ++             E +   + A++           +      
Sbjct: 117 CLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 176

Query: 520 KREHPMSSWIRVGNTRFTTMA-----ITGLSPGHQY-EFRVYAENVYGRSDPSTTSDLIT 573
             E          + ++  +      I  + P   Y  ++   ++        + +    
Sbjct: 177 TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236

Query: 574 TYGELLSGMEAPI 586
              E +S     +
Sbjct: 237 VITEPISSAVPKV 249

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  152 bits (385), Expect = 7e-42
 Identities = 57/234 (24%), Positives = 90/234 (38%), Gaps = 16/234 (6%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
           AQN  G  +   A  +V  +D + +  P I +  +     +   A   C  +G P P I+
Sbjct: 83  AQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEIT 141

Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAELIIM- 383
           W K    + PSA +    +  +  L I S    D  +Y C A N  GV+ S+ A L +  
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201

Query: 384 --TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
              AP+F++ P   +      G NV +     G P P + W +  E +       V    
Sbjct: 202 QNVAPRFSILPMSHEIM---PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGR-- 256

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGH 495
                 +      D+A Y  VA + LG+  A+ +I +   P            H
Sbjct: 257 ----NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH--HHHHH 304

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  127 bits (320), Expect = 6e-33
 Identities = 45/204 (22%), Positives = 78/204 (38%), Gaps = 7/204 (3%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYT 349
           + P  I   ++   +    A F C  TG PKP ++W K  +++       I F E     
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64

Query: 350 LIINSVYGV-DADEYVCRAVNKGGVKSTKAELIIMTAPKF-NVPPRFRDT---AYFDKGE 404
           L I  +    D + Y C A N  G  +  A+L ++   +  +  P           ++  
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124

Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAE 464
              +    +G P P+ITW++D   ++           R   L I  +   D   Y  VA 
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT 184

Query: 465 NDLGM-DSAIVKIQISDRPDPPQF 487
           N  G+  S+   + +  +   P+F
Sbjct: 185 NSAGVRYSSPANLYVRVQNVAPRF 208

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 6/77 (7%)

Query: 21  GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
           G     V   +    +  +D              ++    +D+ +YT    +S G +   
Sbjct: 231 GSPMPYVKWMQGAEDLTPEDDMPVGRN------VLELTDVKDSANYTCVAMSSLGVIEAV 284

Query: 81  FTINITGLPGPPIGPLD 97
             I +  LP        
Sbjct: 285 AQITVKSLPKAGTKHHH 301

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 2/101 (1%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-IKEIR- 59
           P       G          GD    V+  K G+ V S         +    +  I+ +R 
Sbjct: 13  PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRT 72

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSE 100
             D   Y     NS G ++    + +      P G  ++  
Sbjct: 73  PRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  159 bits (402), Expect = 2e-41
 Identities = 78/623 (12%), Positives = 157/623 (25%), Gaps = 96/623 (15%)

Query: 26  EVSLTKNGRVVQSDDRFKFTVLDD---YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT 82
           ++          S+ R + T   D      + I ++   D G Y      +  +      
Sbjct: 58  DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY 117

Query: 83  INITGLP-----GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI 137
           +     P         G + ++E    T  +          L V+          +P   
Sbjct: 118 VQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGS--ISNLNVSLCARYPEKRFVPDGN 175

Query: 138 CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPV 197
            IS       F +         +    A   +     +  I  +     YD    P   +
Sbjct: 176 RISWD-SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI 234

Query: 198 VTQVGGDF-------------VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
              VG                ++ +W+ P      +       K + GS+  + +     
Sbjct: 235 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL----- 289

Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANA 304
             S + I  +    Q  +   A +        +  NS  ++                  A
Sbjct: 290 --STLTIDGVTRSDQGLYTCAASSGLM-----TKKNSTFVRVHEKPFVAFGSGMESLVEA 342

Query: 305 IQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYV 364
                 +      G P P I W K    +  +           + L I  V   D   Y 
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEVSERDTGNYT 397

Query: 365 CRAVNKGG--VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP-KIT 421
               N      +S    L++   P+            +  G    +       P P  I 
Sbjct: 398 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIH 457

Query: 422 WYRD---------------------------------NEVIESGGHFHVETSERHAILTI 448
           WY                                   N++  +   F +   +   + T+
Sbjct: 458 WYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTL 517

Query: 449 RDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAP--- 505
              +   +A Y+  A N +G    ++   ++  P+    P ++    +S++L   A    
Sbjct: 518 VIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRST 577

Query: 506 ------IWDGGSNITNYIVEKREHPMSSW----------IRVGNTRFTTMAITGLSPGHQ 549
                    G   +  ++ E       +                     M +   S   Q
Sbjct: 578 FENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQ 637

Query: 550 YEFRVYAENVYGRSDPSTTSDLI 572
            ++   A++   +        L 
Sbjct: 638 GDYVCLAQDRKTKKRHCVVRQLT 660

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  152 bits (386), Expect = 2e-39
 Identities = 87/566 (15%), Positives = 158/566 (27%), Gaps = 97/566 (17%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD----------RFKFTVLDDYI 51
            + + +  G+   +      +  + +         +             +    +     
Sbjct: 231 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 290

Query: 52  IIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGP--LDVSEITKH----- 104
            + I  + + D G YT   S+   +   +  + +   P    G     + E T       
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 350

Query: 105 TCTLHWNPP-----KYDGGLKVTHYVVERRDISMPHWICI-STTCHDT---TFIVQGLTE 155
                  PP       +G       +     I   H + I   +  DT   T I+     
Sbjct: 351 PAKYLGYPPPEIKWYKNGIP-----LESNHTIKAGHVLTIMEVSERDTGNYTVILT-NPI 404

Query: 156 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYD----------------KPSPPGI---- 195
            +E   HV+++      PP   I      SP D                 P P  I    
Sbjct: 405 SKEKQSHVVSLVVYV--PPQ--IGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYW 460

Query: 196 ---PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIP 252
                        V+++   P ++  S       +K EV  + +  +       S + I 
Sbjct: 461 QLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQ 520

Query: 253 NLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQF 312
                  Y  +  A N+ G         S  +        PEI +   +    +  +   
Sbjct: 521 AANVSALY--KCEAVNKVG---RGERVISFHVTRG-----PEITLQ-PDMQPTEQESVSL 569

Query: 313 QCTITGCPKPTISWLKGSREITP--------------------SARHHIFAEGDTYTLII 352
            CT        ++W K   +  P                    +A     +  D   + +
Sbjct: 570 WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMEL 629

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDT---AYFDKGENVVVK 409
            +    D  +YVC A ++   K       +    +  V P             GE++ V 
Sbjct: 630 KNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER--VAPTITGNLENQTTSIGESIEVS 687

Query: 410 IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
              +G P P+I W++DNE +       ++   R+  LTIR     D   Y   A + LG 
Sbjct: 688 CTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIRRVRKEDEGLYTCQACSVLGC 745

Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGH 495
                   I    +           H
Sbjct: 746 AKVEAFFIIEGAQEKTNLERTHHHHH 771

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  127 bits (319), Expect = 8e-31
 Identities = 65/570 (11%), Positives = 142/570 (24%), Gaps = 82/570 (14%)

Query: 55  IKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKH-------TCT 107
           ++         +    + ++     + +++       P   +    +T         TC 
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLD------LPRLSIQKDILTIKANTTLQITCR 54

Query: 108 LHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVN 167
              +               +            S      T  +  +       +      
Sbjct: 55  GQRDL-------DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRE 107

Query: 168 ENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID 227
            +        +   ++          G+  +T+     V +    P     S +      
Sbjct: 108 TDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVI----PCLGSISNLNVSLCA 163

Query: 228 KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
           ++           ++  +     IP+ +          A+     S  S     V +   
Sbjct: 164 RYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE-SYQSIMYIVVVVGYR 222

Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW------LKGSREITPSARHHI 341
           +      ++ P               CT        I +       K   +   +     
Sbjct: 223 IY---DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 279

Query: 342 FAEGDTY----TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDT 397
            +  +      TL I+ V   D   Y C A +    K     + +   P           
Sbjct: 280 QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESL 339

Query: 398 AYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTA 457
                GE V +   + GYP P+I WY++   +ES              LTI + S  DT 
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV-----LTIMEVSERDTG 394

Query: 458 PYRVVAENDLGMD--SAIVKIQISDRPDPPQFPTVEDI---------------------- 493
            Y V+  N +  +  S +V + +   P   +   +  +                      
Sbjct: 395 NYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPH 454

Query: 494 ---------------GHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTT 538
                             ++++    P  +  S        K E   + +  +     T 
Sbjct: 455 HIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTV 514

Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTT 568
             +   +      ++  A N  GR +   +
Sbjct: 515 STLVIQAANVSALYKCEAVNKVGRGERVIS 544

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  125 bits (314), Expect = 3e-30
 Identities = 72/451 (15%), Positives = 135/451 (29%), Gaps = 77/451 (17%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
           M + +    G+  ++   Y G  P E+   KNG  ++S+      +   +++  I E+ +
Sbjct: 336 MESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHT----IKAGHVLT-IMEVSE 390

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKH---------TCTLHWN 111
            D G+YTV L+N       +  +++     P IG   +               TCT++  
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAI 450

Query: 112 PP------KYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMA 165
           PP       +    +  +   +   ++ P+      +  D     +      ++      
Sbjct: 451 PPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALI--- 507

Query: 166 VNENGMGPPLEGINPIKAK----------------------SPYDKPSPPGIPVVTQVGG 203
               G    +  +    A                            P     P +     
Sbjct: 508 ---EGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQ 564

Query: 204 DFVNLS------------WDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINI 251
           + V+L             W K          G          D   ++N  + + S  +I
Sbjct: 565 ESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDI 624

Query: 252 PNLI--------EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNAN 303
             +         +G  Y     AQ+             + + +     AP I   L N  
Sbjct: 625 LIMELKNASLQDQG-DYVCL--AQDRKT-KKRHCVVRQLTVLER---VAPTITGNLENQT 677

Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
                + +  CT +G P P I W K +  +   +   +  +     L I  V   D   Y
Sbjct: 678 TSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRKEDEGLY 735

Query: 364 VCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 394
            C+A +  G    +A  II  A +     R 
Sbjct: 736 TCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  145 bits (368), Expect = 1e-40
 Identities = 45/207 (21%), Positives = 69/207 (33%), Gaps = 10/207 (4%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYT 349
             P       +   +    A F C  TG P+P I W K  ++++      I F +G    
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64

Query: 350 LIINSVYGV-DADEYVCRAVNKGGVKSTKAELIIMTAPKF-NVPPRFRD---TAYFDKGE 404
           L I  +    D   Y C A N  G  S    L ++   +     P           ++  
Sbjct: 65  LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTR 124

Query: 405 NVVVKIPFTGYPKPKITWYRDNEVI---ESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
              +    +G P P+ITW++D   +    + G      SE    L I  +   D   Y  
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184

Query: 462 VAENDLGMD-SAIVKIQISDRPDPPQF 487
           VA N  G   SA   + +         
Sbjct: 185 VATNSAGTRYSAPANLYVRGTKHHHHH 211

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  100 bits (250), Expect = 3e-24
 Identities = 29/132 (21%), Positives = 43/132 (32%), Gaps = 5/132 (3%)

Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 320
            +   A N  G  +  S   +V  +D +    P I +  +     +   A   C  +G P
Sbjct: 78  IYECVASNNVG-EISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNP 136

Query: 321 KPTISWLKGSREITPS---ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-ST 376
            P I+W K    +  S    R           L I      D  +Y C A N  G + S 
Sbjct: 137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSA 196

Query: 377 KAELIIMTAPKF 388
            A L +      
Sbjct: 197 PANLYVRGTKHH 208

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 2/77 (2%)

Query: 21  GDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
           GD   ++   K G+ V +         D    ++         D   Y    SN+ G +S
Sbjct: 32  GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEIS 91

Query: 79  GTFTINITGLPGPPIGP 95
            +  + +      P G 
Sbjct: 92  VSTRLTVLREDQIPRGF 108

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 26  EVSLTKNGRVVQSDD---RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS-VSGTF 81
           E++  K+   V + +   R K    +    + I++  + D G Y    +NS+G+  S   
Sbjct: 139 EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPA 198

Query: 82  TINITGLP 89
            + + G  
Sbjct: 199 NLYVRGTK 206

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  146 bits (369), Expect = 8e-40
 Identities = 39/211 (18%), Positives = 71/211 (33%), Gaps = 15/211 (7%)

Query: 70  LSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR 129
           +++     S    +   G   P    L  +++T  + +  W PP       +T Y V   
Sbjct: 1   MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPPNVQ----LTGYRVRVT 56

Query: 130 DISMPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYD 188
                  +  I+     ++ +V GL    +Y   V A+ +     P +G+      +  +
Sbjct: 57  PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGV-----VTTLE 111

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
             SPP    VT      + +SW    +     I G+ +D          +  +     S 
Sbjct: 112 NVSPPRRARVTDATETTITISWRTKTET----ITGFQVDAVPANGQTPIQRTIKPDVRS- 166

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
             I  L  G  Y+  +Y  N+   S P    
Sbjct: 167 YTITGLQPGTDYKIYLYTLNDNARSSPVVID 197

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  131 bits (332), Expect = 1e-34
 Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 19/217 (8%)

Query: 66  YTVNLS--NSSG-SVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT 122
           Y V++     +  S      +       PP     V++ T+ T T+ W          +T
Sbjct: 87  YEVSVYALKDTLTSRPAQGVVTTLENVSPP-RRARVTDATETTITISWRTKTET----IT 141

Query: 123 HYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
            + V+    +    I  +      ++ + GL  G +Y  ++  +N+N    P+       
Sbjct: 142 GFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVI----- 196

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
                     P          + + +SW  P     +RI GY I   + GS   + V   
Sbjct: 197 --DASTAIDAPSNLRFLATTPNSLLVSWQPP----RARITGYIIKYEKPGSPPREVVPRP 250

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
               ++  I  L  G +Y   V A      S P    
Sbjct: 251 RPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGR 287

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 87.5 bits (217), Expect = 2e-19
 Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 460 RVVAENDLGM-DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
            V A  D      A   +   +   PP+   V D    ++ + WR         IT + V
Sbjct: 90  SVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTK----TETITGFQV 145

Query: 519 EKREHPMSSWIRVG-NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           +       + I+        +  ITGL PG  Y+  +Y  N   RS P    
Sbjct: 146 DAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVID 197

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 86.0 bits (213), Expect = 9e-19
 Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 7/113 (6%)

Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
             +   ND    S+ V I  S   D P          +SL + W+ P     + IT YI+
Sbjct: 180 IYLYTLNDNA-RSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPP----RARITGYII 234

Query: 519 EKREHPMSSW--IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           +  +        +       T   ITGL PG +Y   V A     +S+P    
Sbjct: 235 KYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGR 287

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 84.5 bits (209), Expect = 3e-18
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 6/115 (5%)

Query: 462 VAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKR 521
           +A +     S +  +        P       +   SL+  W  P       +T Y V   
Sbjct: 1   MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVT 56

Query: 522 EHPMSSWIRVGN--TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
               +  ++  N     +++ ++GL    +YE  VYA      S P+        
Sbjct: 57  PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLE 111

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 72.5 bits (178), Expect = 3e-14
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 65  DYTVNLS--NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT 122
           DY + L   N +   S    I+ +     P   L     T ++  + W PP+     ++T
Sbjct: 177 DYKIYLYTLNDNA-RSSPVVIDASTAIDAP-SNLRFLATTPNSLLVSWQPPRA----RIT 230

Query: 123 HYVVERRDISMPHW-ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEG 177
            Y+++      P   +        T   + GL  G EY  +V+A+  N    PL G
Sbjct: 231 GYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIG 286

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  148 bits (374), Expect = 2e-39
 Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 9/215 (4%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
           A+N A     + A   +    P   +    +    N  AI+  +A  +C ++G P P+ +
Sbjct: 196 ARNPASTRTGNEAEVRILSD-PGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT 254

Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
           WL+G   I   ++ +    G    L+I++V   D+  Y C    K    S  AEL ++  
Sbjct: 255 WLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP 312

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
           P F   P      Y  +  ++  +   +G P P + W ++ +V+    +F +        
Sbjct: 313 PWFLNHPS---NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN--- 366

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
           L I      D   Y+ VAEN+ G   +  ++ +  
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  125 bits (316), Expect = 1e-31
 Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 6/197 (3%)

Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT 349
           A     +    +  A        +C + G P PTI W K  +++ P           +  
Sbjct: 119 AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA 178

Query: 350 LIINSVYGVDADEYVCRAVNKGGVK-STKAELIIMTAPKFNVPPRFR---DTAYFDKGEN 405
           L I+ +   D+  Y C A N    +   +AE+ I++ P  +    F          +G++
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD 238

Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
            V++   +GYP P  TW R  EVI+     +       + L I + ++ D+  Y  V   
Sbjct: 239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTY 296

Query: 466 DLGMDSAIVKIQISDRP 482
                SA  ++ +   P
Sbjct: 297 KNENISASAELTVLVPP 313

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  110 bits (277), Expect = 2e-26
 Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 21/234 (8%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPTI 324
             +E      S   +    +          +    +A  ++  N    C+       P I
Sbjct: 3   WGSELE---SSHHHHHHGGRRS-----LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVI 54

Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGV-----DADEYVCRAVNK--GGVKSTK 377
            W K    +            +  +L+I ++        D   Y C A     G + S  
Sbjct: 55  KWKKDGLILALGMDDRKQQLPNG-SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRT 113

Query: 378 AELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV 437
           A++++    +F        +     G+ V++K    G P P I W ++ + +        
Sbjct: 114 AKVMVAGPLRFLSQTE---SITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSR 170

Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFPTV 490
                   L I      D+  YR  A N          +++I   P   +    
Sbjct: 171 VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYF 224

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  109 bits (274), Expect = 6e-26
 Identities = 67/417 (16%), Positives = 124/417 (29%), Gaps = 81/417 (19%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDD---YII-IFIK 56
           P+      G N  +      D+ +  +   K+G ++      +   L +    I  I   
Sbjct: 28  PSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHS 87

Query: 57  EIRKEDAGDYTVNLSNSSGS--VSGTFTINITGLPGPPIGPLDVSEITKHTCTLH----- 109
              K D G Y    S       +S T  + + G          ++     T  L      
Sbjct: 88  RHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIG 147

Query: 110 -------WNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFH 162
                  W          +     + R + +P               +  L  G   ++ 
Sbjct: 148 DPMPTIHW----QKNQQDLNPIPGDSRVVVLP----------SGALQISRLQPGDSGVYR 193

Query: 163 VMAVNENG-----------MGPPLEGINPIKAKSPYDKPSPPGIPVVTQ--VGGD-FVNL 208
             A N              +  P         + P +  +  G   V +  V G    + 
Sbjct: 194 CSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF 253

Query: 209 SWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIE---GRQYEFRVY 265
           +W +   +   +++          +               + I N+ +   G  Y     
Sbjct: 254 TWLR--GEEVIQLRSKKYSLLGGSN---------------LLISNVTDDDSGT-YT--CV 293

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
              +       SAS  + +  P     P  +    N  A ++ + +F+C ++G P PT++
Sbjct: 294 VTYKNENI---SASAELTVLVP-----PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVN 345

Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           W+K    + PS    I        L I  V   D   Y C A N+ G   + A+LI+
Sbjct: 346 WMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 13/136 (9%)

Query: 366 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYR 424
           R  ++              +  F   P     A   +G NV++     +    P I W +
Sbjct: 2   RWGSELESSHHHHHHGGRRSLHFVSEPS---DAVTMRGGNVLLNCSAESDRGVPVIKWKK 58

Query: 425 DNEVIESGGHFHVETSERHAI----LTIRDASNVDTAPYRVVAENDLG--MDSAIVKIQI 478
           D  ++  G     +     ++    +        D   Y+  A       + S   K+ +
Sbjct: 59  DGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV 118

Query: 479 SDRPD---PPQFPTVE 491
           +         +  T  
Sbjct: 119 AGPLRFLSQTESITAF 134

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
           P+ LY  E  + + +   +G     V+  KNG VV   D F+  ++    +  I  + K 
Sbjct: 319 PSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQ--IVGGSNLR-ILGVVKS 375

Query: 62  DAGDYTVNLSNSSGSVSGTFTINIT 86
           D G Y     N +G+   +  + + 
Sbjct: 376 DEGFYQCVAENEAGNAQSSAQLIVP 400

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score =  142 bits (359), Expect = 3e-39
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 8/195 (4%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW--ICISTTCH 144
            +P  P               +HW     D    + HY ++      P           +
Sbjct: 4   DVPNAPKLT--GITCQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPN 60

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGD 204
             +  V  ++    Y F V+A N+ G  PP    +    + P      P   V      +
Sbjct: 61  TDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ-PDVPFKNPDNVVGQGTEPN 119

Query: 205 FVNLSWDK-PLDDGGSRIQGYWID-KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEF 262
            + +SW   P  +  +    Y++  K ++ + AW+  N+     + I I +     +Y  
Sbjct: 120 NLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLI 179

Query: 263 RVYAQNEAGLSLPSS 277
           +V A N+ G S  ++
Sbjct: 180 KVVAINDRGESNVAA 194

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 95.2 bits (237), Expect = 1e-22
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKRE-HPMSSWIRVGNT--RF 536
           D P+ P+   +     D   + W     D  S I +Y ++       +SW          
Sbjct: 4   DVPNAPKLTGIT-CQADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSG 581
            +  +  +SP   Y FRV A N  G S PS  SD  TT  ++   
Sbjct: 62  DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFK 106

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 91.7 bits (228), Expect = 2e-21
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGS-DAWQRVNVAICAP 246
           D P+ P +  +T    D   + W++   D  S I  Y I  +   +  +W      +   
Sbjct: 4   DVPNAPKLTGIT-CQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61

Query: 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV 297
               +  +     Y FRV A N+ G S PS+ S+S   +  +  K P+ +V
Sbjct: 62  DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVV 112

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 80.5 bits (199), Expect = 2e-17
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 460 RVVAENDLGM-----DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRA-PIWDGGSNI 513
           RV+A N +G       S     Q       P     +    ++L + W   P  +  +  
Sbjct: 78  RVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPN 137

Query: 514 TNYIVE-KREHPMSSWIR--VGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
            +Y V  KR+ P ++W    + + R   + I       +Y  +V A N  G S+ +    
Sbjct: 138 FHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEV 197

Query: 571 LITT 574
           +  +
Sbjct: 198 VGYS 201

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  149 bits (378), Expect = 7e-39
 Identities = 40/100 (40%), Positives = 58/100 (58%)

Query: 475 KIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT 534
            +     P+PP+FP +E+I  +++ L W+ P  DGGS +TNY +EKRE    SW     +
Sbjct: 3   MVADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS 62

Query: 535 RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           R+T   I GL  G QYEFR+ AEN +G+S P   +  +  
Sbjct: 63  RYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLI 102

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  101 bits (254), Expect = 7e-23
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
            +P PP  P++  +  + V LSW  P  DGGS +  Y I+K E    +W     A    +
Sbjct: 8   PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSP--CAKSRYT 65

Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPE 294
              I  L  G+QYEFR+ A+N+ G S P   +  V I      +   
Sbjct: 66  YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRG 112

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 28/110 (25%), Positives = 40/110 (36%)

Query: 273 SLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE 332
                  +        +   P  IV        +  +A F C +     P ++W K  RE
Sbjct: 463 KHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE 522

Query: 333 ITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           +  S ++     G+ Y L IN V G D  EY  RA N  G K     L +
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 82  TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST 141
            +     P PP  P+ +  I      L W PP  DGG  VT+Y +E+R+     W   + 
Sbjct: 3   MVADVPEPEPPRFPI-IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAK 61

Query: 142 TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
           + + T   ++GL  G++Y F ++A N++G   P E   P+       K   
Sbjct: 62  SRY-TYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRR 111

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 67.6 bits (165), Expect = 5e-12
 Identities = 16/77 (20%), Positives = 30/77 (38%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
           G++            P +TW++D+  ++    +    +     LTI      D   Y V 
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 556

Query: 463 AENDLGMDSAIVKIQIS 479
           A+N  G    IV + ++
Sbjct: 557 AKNSYGTKEEIVFLNVT 573

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 17/80 (21%), Positives = 34/80 (42%)

Query: 7   IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 66
           + EG +           P  V+  K+ R ++   ++      +   + I  ++ +D G+Y
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY 553

Query: 67  TVNLSNSSGSVSGTFTINIT 86
           TV   NS G+      +N+T
Sbjct: 554 TVRAKNSYGTKEEIVFLNVT 573

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  151 bits (381), Expect = 9e-39
 Identities = 79/602 (13%), Positives = 144/602 (23%), Gaps = 99/602 (16%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF---IKEI 58
              + +  G     +    G       L   G  V+     +  V      I    +   
Sbjct: 171 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNT 230

Query: 59  RKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGG 118
            K DAG Y   +    G     +   +   P  PI P  ++ +      +  N    +G 
Sbjct: 231 TKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGD 290

Query: 119 LKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
             +    VE    S   W         T++ +  L    EY   V+       G    G 
Sbjct: 291 GPIVAREVEYCTASGS-WNDRQPV-DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPG- 347

Query: 179 NPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ-----GYWIDKHEVG 232
             ++ ++    P   P    V +V    + + W+    +            Y        
Sbjct: 348 PALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQE 407

Query: 233 SDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLS------------LPSSASN 280
               +       +  Q  I NL        ++   N  G              LP +   
Sbjct: 408 QVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPT 467

Query: 281 SVQIKDPMAAKAPEIIV----PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS 336
                        +I +    P +    I  +   ++   +  P+  +S   G      +
Sbjct: 468 ESIQGST---FEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGN 524

Query: 337 ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF-NVPPRFR 395
             H +F       L   + Y       + RA    G     A     T     ++P    
Sbjct: 525 ETHFLFFG-----LYPGTTYSF----TI-RASTAKGF-GPPATNQFTTKISAPSMPAYEL 573

Query: 396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 455
           +T        V V +         ++ Y+            +   E     T +    + 
Sbjct: 574 ETPLNQTDNTVTVMLKPAHSRGAPVSVYQ------------IVVEEERPRRTKKTTEILK 621

Query: 456 TAPYRVVAENDLGMDSA---IVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSN 512
             P  +  +N   ++S      +           F T+ D                    
Sbjct: 622 CYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPF-TIGD-------------------- 660

Query: 513 ITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLI 572
                               N  +     T L P   Y     A +            + 
Sbjct: 661 --------------------NKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVA 700

Query: 573 TT 574
           T 
Sbjct: 701 TK 702

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  124 bits (313), Expect = 4e-30
 Identities = 39/269 (14%), Positives = 71/269 (26%), Gaps = 17/269 (6%)

Query: 314 CTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV 373
             +   P     W           R           L I++ +            +    
Sbjct: 98  VKVNNGPLGNPIWNISGDPTRTWNRAE---------LAISTFWPNFYQVIFEVITSGHQG 148

Query: 374 KSTKAELIIMTAPKFNVPPRFR-DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG 432
                E+ ++  P    P   R      + G+    +    G        +     +   
Sbjct: 149 YLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA 208

Query: 433 GHFHVETSERH---AILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFP 488
               ++ +      A   + + +  D   YR +   + G+  S   ++ + + P P   P
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPP 268

Query: 489 TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGH 548
            +  +G   L +   A   +G   I    VE       SW        T+  I  L P  
Sbjct: 269 QLASVGATYLWIQLNANSINGDGPIVAREVEYCTAS-GSWNDRQPVDSTSYKIGHLDPDT 327

Query: 549 QYEFRVYAENV--YGRSDPSTTSDLITTY 575
           +YE  V        G   P       T  
Sbjct: 328 EYEISVLLTRPGEGGTGSPGPALRTRTKC 356

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  100 bits (249), Expect = 3e-22
 Identities = 78/616 (12%), Positives = 160/616 (25%), Gaps = 89/616 (14%)

Query: 15  VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV----LDDYIIIFIKEIRKEDAGDYTVNL 70
           V +              +G   ++ +R +  +     + Y +IF + I     G   ++ 
Sbjct: 96  VYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIF-EVITSGHQGYLAIDE 154

Query: 71  SNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRD 130
                 V G                ++  +     C+        D        V +   
Sbjct: 155 VK----VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL 210

Query: 131 ISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKP 190
             +      S+     +F V   T+     +  M   E G+G               + P
Sbjct: 211 KEIKV---TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGIS-----NYAELVVKEPP 262

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
            P   P +  VG  ++ +  +    +G   I    + ++   S +W          +   
Sbjct: 263 VPIAPPQLASVGATYLWIQLNANSINGDGPIVAREV-EYCTASGSWNDRQPVD--STSYK 319

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA--KAP-----------EIIV 297
           I +L    +YE  V            S   +++ +   A   + P           +I +
Sbjct: 320 IGHLDPDTEYEISVLLTRPGEGG-TGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITI 378

Query: 298 ----PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 353
                  N     ++N           +  +     S +   S   H       YT    
Sbjct: 379 RWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEV-SWDTENSHPQHTITNLSPYTN--- 434

Query: 354 SVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK---- 409
                         +N  G K ++ ELI+ T                   E + ++    
Sbjct: 435 --V-----SVKLILMNPEGRKESQ-ELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREP 486

Query: 410 ----IPFTGYPKPKITWYRDN------EVIESGGHFHVETSERHAILTIRDASNVDTAPY 459
                  T Y   +IT+   +      ++    G      +E H +            P 
Sbjct: 487 TQTYGVITLY---EITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFF-------GLYPG 536

Query: 460 -----RVVAENDLGM-DSAIVKIQ-ISDRPDPPQFP--TVEDIGHDSLALVWRAPIWDGG 510
                 + A    G    A  +       P  P +   T  +   +++ ++ +      G
Sbjct: 537 TTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAH-SRG 595

Query: 511 SNITNYIVEKREHPMSSWIRV-----GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP 565
           + ++ Y +   E       +                  L     Y    +  +    + P
Sbjct: 596 APVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQP 655

Query: 566 STTSDLITTYGELLSG 581
            T  D  T  G   + 
Sbjct: 656 FTIGDNKTYNGYWNTP 671

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 20/179 (11%), Positives = 42/179 (23%), Gaps = 17/179 (9%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
              + V +     P     W    +            +   A L I             V
Sbjct: 91  PGLLNVYVKVNNGPLGNPIWNISGDPTR---------TWNRAELAISTFWPNFYQVIFEV 141

Query: 463 AENDLGMDSAIVKIQISDRPDP-----PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYI 517
             +      AI ++++   P        +   VE            A       +     
Sbjct: 142 ITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201

Query: 518 VEKREHPMSSWIRVGNTRFTTMA--ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                      I+V ++R    +  +   +     ++R       G    S  ++L+  
Sbjct: 202 GIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGV-GISNYAELVVK 259

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 16/156 (10%), Positives = 31/156 (19%), Gaps = 44/156 (28%)

Query: 89  PGPPIGPLDVSE-ITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTT 147
           P  P   L+     T +T T+   P    G   V+ Y +   +         +       
Sbjct: 566 PSMPAYELETPLNQTDNTVTVMLKPAHSRGA-PVSVYQIVVEEERPRRTKKTTEILKCYP 624

Query: 148 ------------------------------------------FIVQGLTEGQEYLFHVMA 165
                                                     +    L   + Y  +  A
Sbjct: 625 VPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQA 684

Query: 166 VNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQV 201
            +       ++ +      +   KP P         
Sbjct: 685 ASRANGETKIDCVQVATKGAATPKPVPEPEKQTDHT 720

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  141 bits (358), Expect = 3e-38
 Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 17/225 (7%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
           A +  G +    A+  ++I              +      Q  +A+  C ++  P P +S
Sbjct: 79  ATDAKGQT--QEATVVLEIYQK-----LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 131

Query: 326 WLKGSREI--TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK--GGVKSTKAELI 381
           WL  + E+      R  + A      L I ++   D   Y C    +  G +      +I
Sbjct: 132 WLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188

Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
           +   P  ++P +  +    ++GE +      +G P+P I+W+R+ ++IE    + ++ S 
Sbjct: 189 VNVPPAISMPQKSFNA-TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 247

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
               LT+R+  N D  PY   A N  G D     +Q+  +     
Sbjct: 248 TE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHH 290

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  126 bits (319), Expect = 7e-33
 Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 7/205 (3%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
             ++ + L         +  F CT  G P+    +     +I  + R  +  EG    L 
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63

Query: 352 INSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI 410
           I +    DA  Y C+A +  G  +     L I     F           F +GE+  V  
Sbjct: 64  IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVS---PQEFKQGEDAEVVC 120

Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG-- 468
             +  P P ++W   NE + +           +  L I + +  D   YR     +    
Sbjct: 121 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-LQILNINKSDEGIYRCEGRVEARGE 179

Query: 469 MDSAIVKIQISDRPDPPQFPTVEDI 493
           +D   + + ++  P         + 
Sbjct: 180 IDFRDIIVIVNVPPAISMPQKSFNA 204

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 21  GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
           G     +S  +NG++++ ++++   +      + ++ I   D G Y    +N +G     
Sbjct: 220 GSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 277

Query: 81  FTINITGLP 89
             + +    
Sbjct: 278 AFLQVFVQH 286

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 1/109 (0%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
            + + +  G++        G+          G  + S  R           + I     E
Sbjct: 11  LSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 70

Query: 62  DAGDYTVNLSNSSGSV-SGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
           DAG Y    +++ G     T  + I                      + 
Sbjct: 71  DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV 119

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  137 bits (346), Expect = 1e-37
 Identities = 54/185 (29%), Positives = 72/185 (38%), Gaps = 10/185 (5%)

Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-ARHHIFAEGDTY 348
            KAP I  PL   +A+    A F C +   P+P ISW +    I     R+ I   G   
Sbjct: 5   PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ-- 62

Query: 349 TLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
            L I SV   D   Y C A N  GG   +   L +   PK   PP         +G   V
Sbjct: 63  LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKII---EGLKAV 119

Query: 408 VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDL 467
           +     G PKP ++W + +  +       V  S     L I +    D   YR VA+N L
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSL 176

Query: 468 GMDSA 472
           G   +
Sbjct: 177 GTAYS 181

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 96.3 bits (240), Expect = 4e-23
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
           A N  G ++ S  +  V++K       P+I  P  N   I+   A   CT  G PKP++S
Sbjct: 81  ANNGVGGAVESCGALQVKMK-------PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVS 133

Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIM 383
           W+KG   +  ++R  +   G   +L I++V   DA +Y C A N  G   S   +L + 
Sbjct: 134 WIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 30  TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG-SVSGTFTINITGL 88
           T+N  +++  D  ++++ ++  ++ I  +   D G Y    +N  G +V     + +   
Sbjct: 42  TRNKILIKLFDT-RYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK 100

Query: 89  PGPPIGPLDVSEITKHTCTLH 109
           P     P++V  I      L 
Sbjct: 101 PKITRPPINVKIIEGLKAVLP 121

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  136 bits (345), Expect = 1e-37
 Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 6/189 (3%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
                  +      Q  +A+  C ++  P P +SWL  + E+T  + +      +   L 
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQ 60

Query: 352 INSVYGVDADEYVCRAVNKGG--VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 409
           I ++   D   Y C    +    +      +I+   P  ++P +  +    ++GE +   
Sbjct: 61  ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA-TAERGEEMTFS 119

Query: 410 IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
              +G P+P I+W+R+ ++IE    + ++ S     LT+R+  N D  PY   A N  G 
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGE 177

Query: 470 DSAIVKIQI 478
           D     +Q+
Sbjct: 178 DEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 88.7 bits (220), Expect = 2e-20
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP--LRNANAIQNHNAQFQCTITGCPKPT 323
            + EA   +       +          P I +P    NA A +     F C  +G P+P 
Sbjct: 76  GRVEARGEIDFRDIIVI------VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 129

Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           ISW +  + I  + ++ +  +G    L + ++   D   YVCRA NK G    +A L +
Sbjct: 130 ISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 8/56 (14%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 30  TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
            +NG++++ ++++   +      + ++ I   D G Y    +N +G       + +
Sbjct: 133 FRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  140 bits (354), Expect = 2e-37
 Identities = 38/247 (15%), Positives = 81/247 (32%), Gaps = 37/247 (14%)

Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC- 319
            + V  +++ G      +   +  +        E+++ +    A+   + + Q T  G  
Sbjct: 75  IYEVILKDDRGKD---KSRLKLVDEAF-----KELMMEVCKKIALSATDLKIQSTAEGIQ 126

Query: 320 ---------PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370
                        ++W      I  S R      G+   L IN     D  +YV    + 
Sbjct: 127 LYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDG 186

Query: 371 GGVKSTKAELII---------------MTAPKFNVPPRFR---DTAYFDKGENVVVKIPF 412
                   +L                     + N         D     +G+ + +    
Sbjct: 187 KTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV 246

Query: 413 TGYPKPKITWYRDNEVIESGGHFHV-ETSERHAILTIRDASNVDTAPYRVVAENDLGMDS 471
            G P P+++W ++ + + S  H ++   + R A  TI   S  D+  Y +V +N  G ++
Sbjct: 247 WGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSET 306

Query: 472 AIVKIQI 478
           +   + +
Sbjct: 307 SDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  133 bits (335), Expect = 8e-35
 Identities = 32/224 (14%), Positives = 62/224 (27%), Gaps = 13/224 (5%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPK-PTISWLKGSREITPSARHHIFAEGDTYT 349
             P  +  L         N   +C +    K   I W K  REI+   +H    +    T
Sbjct: 6   TGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICT 62

Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR-----FRDTAYFDKGE 404
           L+I      DA  Y     +  G   ++ +L+     +  +                   
Sbjct: 63  LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122

Query: 405 NVVVKIPF--TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
             +    F        K+ W  +   I          +     L I + +  D   Y + 
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 182

Query: 463 AENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPI 506
             +        V +      +   +   + +   ++A   RA +
Sbjct: 183 LFDGKTGHQKTVDLSGQAYDEA--YAEFQRLKQAAIAEKNRARV 224

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 20  AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
              + ++V+ + NG  ++  DR K  V  + I + I E    D G Y + L +       
Sbjct: 133 YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK 192

Query: 80  TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP 134
           T  ++             +    K       N  +  GGL     + E + +++ 
Sbjct: 193 TVDLSGQAYDEAYAEFQRL----KQAAIAEKNRARVLGGLPDVVTIQEGKALNLT 243

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV-LDDYIIIFIKEIR 59
           +P+ + I EG    +     GD P EVS  KN + + SDD               I  + 
Sbjct: 228 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVS 287

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINI 85
             D+G Y + + N  GS +  FT+++
Sbjct: 288 TADSGKYGLVVKNKYGSETSDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 3/104 (2%)

Query: 7   IPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGD 65
           +    N  +K   A  +    +   K+ R +  D++  F   D    + I E  K+DAG 
Sbjct: 18  VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGI 75

Query: 66  YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
           Y V L +  G       +         +       ++     + 
Sbjct: 76  YEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  134 bits (340), Expect = 1e-36
 Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 310 AQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 368
            Q    +T       ++W      I  S R      G+   L IN     D  +YV    
Sbjct: 20  IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79

Query: 369 NKGGVKSTKAELII---------------MTAPKFNVPPRFR---DTAYFDKGENVVVKI 410
           +         +L                     + N         D     +G+ + +  
Sbjct: 80  DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTC 139

Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSE-RHAILTIRDASNVDTAPYRVVAENDLGM 469
              G P P+++W ++ + +    H +++    R A  TI   S  D+  Y +V +N  G 
Sbjct: 140 NVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 199

Query: 470 DSAIVKIQI 478
           +++   + +
Sbjct: 200 ETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 87.2 bits (216), Expect = 8e-20
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 1/115 (0%)

Query: 269 EAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK 328
           +A     +      Q       +A  +          +       C + G P P +SWLK
Sbjct: 94  QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK 153

Query: 329 GSREITPSARHHI-FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
             + +  +   ++ F  G T    IN V   D+ +Y     NK G +++   + +
Sbjct: 154 NEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 20  AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
              + ++V+ + NG  ++  DR K  V  + I + I E    D G Y + L +       
Sbjct: 28  YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK 87

Query: 80  TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP 134
           T  ++             + +          N  +  GGL     + E + +++ 
Sbjct: 88  TVDLSGQAYDEAYAEFQRLKQAA----IAEKNRARVLGGLPDVVTIQEGKALNLT 138

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 2/95 (2%)

Query: 413 TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA 472
                 K+ W  +   I          +     L I + +  D   Y +   +       
Sbjct: 28  YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKT--GH 85

Query: 473 IVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIW 507
              + +S +     +   + +   ++A   RA + 
Sbjct: 86  QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 120

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-IKEIR 59
           +P+ + I EG    +     GD P EVS  KN + +   D             F I  + 
Sbjct: 123 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVS 182

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINI 85
             D+G Y + + N  GS +  FT+++
Sbjct: 183 TADSGKYGLVVKNKYGSETSDFTVSV 208

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  137 bits (347), Expect = 8e-36
 Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 13/225 (5%)

Query: 261 EFRVYAQNEAGLSLPSSASNSVQIK---DPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT 317
           ++   A+N A           ++     +      P      ++  A         C   
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYG 237

Query: 318 GCPKPTISWLKGSREI--TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVK 374
             P    ++ K  +++   P  R           L+  +    D   Y C   N  G  +
Sbjct: 238 SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 297

Query: 375 STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH 434
               +L +++APK+   P         +G++V +    TG P P + W  + + + SGG 
Sbjct: 298 KHSLKLTVVSAPKYEQKP--EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGR 354

Query: 435 FHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
             V  S     L I+   N D   Y   A N+ G       +Q++
Sbjct: 355 ATVTDSG----LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  105 bits (264), Expect = 9e-25
 Identities = 30/211 (14%), Positives = 54/211 (25%), Gaps = 17/211 (8%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYT 349
           K P +          +N+    +C I G  +    SW K  +       +    + +  +
Sbjct: 5   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG-S 63

Query: 350 LIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
           L+       D   Y C A    G   S                          +G    +
Sbjct: 64  LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTH---EKTPIEGRPFQL 120

Query: 409 K-IPFTGYPKPKITWYRDN-------EVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
             +    YPKP ITW +         +V +                 +      D   Y 
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV 180

Query: 461 VVAENDLGMD---SAIVKIQISDRPDPPQFP 488
             A+N    +       +I+   + +     
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG 211

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  105 bits (263), Expect = 1e-24
 Identities = 37/243 (15%), Positives = 70/243 (28%), Gaps = 33/243 (13%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI-TGCPKPTI 324
           A+  AG     ++S  +  +                   I+    Q  C +    PKP I
Sbjct: 81  AETPAG----VASSRVISFR---KTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLI 133

Query: 325 SWLKGSREITPSA-------RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKST 376
           +W K      P+A       R     +G+ Y  I+      D  +YVC A N     +  
Sbjct: 134 TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVV 193

Query: 377 KAELIIM----TAPKFNVPPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 429
             E  I         +   P  +          G+  ++   +   P     ++++ + +
Sbjct: 194 LVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDV 253

Query: 430 E--SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD---SAIVKIQISDRPDP 484
                             L  +     D   Y    +N +G     S  + +        
Sbjct: 254 NGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-----A 308

Query: 485 PQF 487
           P++
Sbjct: 309 PKY 311

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 99.2 bits (247), Expect = 1e-22
 Identities = 58/386 (15%), Positives = 106/386 (27%), Gaps = 52/386 (13%)

Query: 23  QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTF 81
           Q ++ S  K+G+     +       D+  ++     +  D G Y       +G   S   
Sbjct: 35  QGVKYSWKKDGKSYNWQEHNAALRKDEGSLV-FLRPQASDEGHYQCFAETPAGVASSRVI 93

Query: 82  TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT------HYVVERRDISMPH 135
           +   T L   P    + + I      L    P       +T                   
Sbjct: 94  SFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153

Query: 136 WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM----GPPLEGINPIKAKSP-YDKP 190
            I      +    IV        Y +   A N            E     K  S    +P
Sbjct: 154 RITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEP 213

Query: 191 SPPGIP--VVTQVGGDFV-----------NLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQ 237
            P  +   ++ + G   +             ++ K     G  + G   D+    +    
Sbjct: 214 VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK----NGKDVNGNPEDRITRHNRTSG 269

Query: 238 RVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV 297
           +          +     +   +  +     N  G   P   S  + +        P+   
Sbjct: 270 KR---------LLFKTTLPEDEGVYTCEVDNGVG--KPQKHSLKLTVVSA-----PKYEQ 313

Query: 298 -PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY 356
            P +     Q  +    C +TG P P + W   ++ +    R  +        L+I  V 
Sbjct: 314 KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATV----TDSGLVIKGVK 368

Query: 357 GVDADEYVCRAVNKGGVKSTKAELII 382
             D   Y CRA N+ G K  +  + +
Sbjct: 369 NGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 3/100 (3%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD--DRFKFTVLDDYIIIFIKEIR 59
              +    GD T +   Y  +     +  KNG+ V  +  DR           +  K   
Sbjct: 219 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL 278

Query: 60  KEDAGDYTVNLSNSSGSV-SGTFTINITGLPGPPIGPLDV 98
            ED G YT  + N  G     +  + +   P     P  V
Sbjct: 279 PEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKV 318

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  127 bits (322), Expect = 3e-35
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 1/108 (0%)

Query: 468 GMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS 527
           G   A + IQI DRP PPQ   +ED+  +++AL W  P  DG + IT Y ++K +     
Sbjct: 4   GSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63

Query: 528 WIRVG-NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           W  V  +   T+  IT L  G++Y FRV++EN+ G S+ +T +     
Sbjct: 64  WFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAV 111

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  124 bits (314), Expect = 4e-34
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           SSGS   +  I I   PGPP   + + ++      L W PPK DG   +T Y +++ D  
Sbjct: 2   SSGSSGASIDIQIIDRPGPP-QIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKK 60

Query: 133 MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKP 190
              W  +    H T+  +  L  G EY F V + N  G+             +   K 
Sbjct: 61  SMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKI 118

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  108 bits (273), Expect = 2e-28
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
           D+P PP I  +  V G+ V L+W  P DDG + I GY I K +  S  W  V       S
Sbjct: 16  DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTS 75

Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEI 295
              I  L+ G +Y FRV+++N  GLS  ++ +    +     A+  +I
Sbjct: 76  -ATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVI----ARDGKI 118

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  136 bits (343), Expect = 2e-34
 Identities = 50/323 (15%), Positives = 100/323 (30%), Gaps = 35/323 (10%)

Query: 266 AQNEAGLSLPSSASNSVQIK-DPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT- 323
              E      S  S    +K  P     P + V   +    +       CTI        
Sbjct: 188 VDQEGK----SVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY 243

Query: 324 ISWLKGSREITPSARHHIFAEGDT-----YTLIINSVYGVDADEYVCRAVNKGGVKSTKA 378
            +W + + +     +++ +  GD       TL I+S    D+  ++C A N  G  +   
Sbjct: 244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT 303

Query: 379 ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK-ITWYRDNEVIESGGHFHV 437
            L ++     N+ P    T + + GENV + + +  +PKP+   W   N         + 
Sbjct: 304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYP 363

Query: 438 ETSERHAI-----LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
           ++     I     L +      +   Y  +  N     +    + ++     P+  T + 
Sbjct: 364 KSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN---TKPEILTYDR 420

Query: 493 ----------IGHDSLALVWRAPIWDGGSNITNY--IVEKREHPMSSWIRVGNTRFTTMA 540
                      G     + W    +  G+       ++      ++S            +
Sbjct: 421 LVNGMLQCVAAGFPEPTIDWY---FCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSS 477

Query: 541 ITGLSPGHQYEFRVYAENVYGRS 563
           I   +  H       A N  G++
Sbjct: 478 IDSSAFKHNGTVECKAYNDVGKT 500

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  121 bits (304), Expect = 2e-29
 Identities = 63/498 (12%), Positives = 127/498 (25%), Gaps = 77/498 (15%)

Query: 26  EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
            V  T       ++++              ++    + G YT    +   +   +  + +
Sbjct: 63  FVKWTFEILDETNENKQN--------EWITEKAEATNTGKYTCTNKHGLSN---SIYVFV 111

Query: 86  TGLPGPPIGPLDVSEITKHT----CTLHWNPP-----KYDGGLKVTHYVVERRDISMPHW 136
                  +    +     +     C L          K   G  +   +    D      
Sbjct: 112 RDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIM 171

Query: 137 IC-ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGI 195
           I  +    H          EG+  L     +       P     P+ + S        G 
Sbjct: 172 IKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKV----RPAFKAVPVVSVSKASYLLREGE 227

Query: 196 PVV---TQVGGDF-VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINI 251
                 T       V  +W +      S+       K +   ++W   +      + + I
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKRE----NSQT------KLQEKYNSWHHGDFNYERQATLTI 277

Query: 252 PNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP---LRNANAIQNH 308
            +        F  YA N  G    ++ + ++++ D        I +              
Sbjct: 278 SSARVNDSGVFMCYANNTFG---SANVTTTLEVVDK-----GFINIFPMINTTVFVNDGE 329

Query: 309 NAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGD-----TYTLIINSVYGVDADE 362
           N          PKP    W+  +R  T     +  +E +        L +  + G +   
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT 389

Query: 363 YVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITW 422
           Y     N     +    + +      N  P        D+  N +++    G+P+P I W
Sbjct: 390 YTFLVSNSDVNAAIAFNVYV------NTKPEILTY---DRLVNGMLQCVAAGFPEPTIDW 440

Query: 423 YRDNEVIESGGHFHVETSERHAI------------LTIRDASNVDTAPYRVVAENDLGMD 470
           Y      +      +    +                +I  ++          A ND+G  
Sbjct: 441 YFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKT 500

Query: 471 SAIVKIQISDRPDPPQFP 488
           SA               P
Sbjct: 501 SAYFNFAFKGNNKEQIHP 518

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  106 bits (266), Expect = 1e-24
 Identities = 49/322 (15%), Positives = 95/322 (29%), Gaps = 41/322 (12%)

Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTI 324
             ++          S  V ++DP      ++ +  R+    ++++   +C +T  P+ T 
Sbjct: 98  TNKHGLS------NSIYVFVRDP-----AKLFLVDRSLYGKEDNDTLVRCPLTD-PEVTN 145

Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 384
             LKG +            +     +I +           C    +G       + I+  
Sbjct: 146 YSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS-VLSEKFILKV 204

Query: 385 APKFNVPPRFRDTA---YFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVE-- 438
            P F   P    +       +GE   V             TW R+N   +    ++    
Sbjct: 205 RPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH 264

Query: 439 ---TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP----DPPQFPTVE 491
                ER A LTI  A   D+  +   A N  G  +    +++ D+      P    TV 
Sbjct: 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324

Query: 492 DIGHDSLALVWRAP--------IW--DGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
               +++ L+             W     +       +K E    S         + + +
Sbjct: 325 VNDGENVDLIVEYEAFPKPEHQQWIYMNRT-----FTDKWEDYPKSENESNIRYVSELHL 379

Query: 542 TGLSPGHQYEFRVYAENVYGRS 563
           T L       +     N    +
Sbjct: 380 TRLKGTEGGTYTFLVSNSDVNA 401

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 72.8 bits (178), Expect = 1e-13
 Identities = 36/316 (11%), Positives = 82/316 (25%), Gaps = 38/316 (12%)

Query: 264 VYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT 323
           +  + + G     S+  SV   +P     P I     +         +  CT  G     
Sbjct: 16  LLLRVQTG-----SSQPSVSPGEP---SPPSIHPGKSDLIVRVGDEIRLLCTDPG----F 63

Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
           + W     + T   + +          I       +  +Y C   +          + + 
Sbjct: 64  VKWTFEILDETNENKQN--------EWITEKAEATNTGKYTCTNKHGLS---NSIYVFVR 112

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
              K  +  R   + Y  +  + +V+ P T  P+      +  +              + 
Sbjct: 113 DPAKLFLVDR---SLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKA 168

Query: 444 AILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQFPTVED-----IGHDS 497
            I+                 + +   + S    +++          +V          + 
Sbjct: 169 GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEE 228

Query: 498 LALVWRAPIWDGGSNIT-----NYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEF 552
             +             T     +    + ++           R  T+ I+         F
Sbjct: 229 FTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVF 288

Query: 553 RVYAENVYGRSDPSTT 568
             YA N +G ++ +TT
Sbjct: 289 MCYANNTFGSANVTTT 304

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 72.4 bits (177), Expect = 2e-13
 Identities = 62/432 (14%), Positives = 110/432 (25%), Gaps = 75/432 (17%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
             +LY  E ++T V+     D  +     K  +        +F       I+     R  
Sbjct: 121 DRSLYGKEDNDTLVRCP-LTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAY 179

Query: 62  DAGDYTVNLSNSSGSV-SGTFTINIT-GLPGPPIGPLDVSEITKH-------TCTLHWNP 112
                  ++     SV S  F + +       P+  +  +            TCT+    
Sbjct: 180 HRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVS 239

Query: 113 P------KYDGG-LKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMA 165
                  K +    K+             +    + T         G      +    M 
Sbjct: 240 SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG-----VF----MC 290

Query: 166 VNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNL-------------SWDK 212
              N  G              +    P     V    G+ V+L              W  
Sbjct: 291 YANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY 350

Query: 213 PLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGL 272
                       W D  +  +++  R        S++++  L       +     N    
Sbjct: 351 M----NRTFTDKWEDYPKSENESNIRYV------SELHLTRLKGTEGGTYTFLVSNSDVN 400

Query: 273 SLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--- 329
           +   + + +V +        PEI+         +  N   QC   G P+PTI W      
Sbjct: 401 A---AIAFNVYVNTK-----PEILT------YDRLVNGMLQCVAAGFPEPTIDWYFCPGT 446

Query: 330 ----SREITPSARHHIFAEGDTY-----TLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
               S  + P     + + G  +        I+S          C+A N  G  S     
Sbjct: 447 EQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506

Query: 381 IIMTAPKFNVPP 392
                 K  + P
Sbjct: 507 AFKGNNKEQIHP 518

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 14/147 (9%), Positives = 32/147 (21%), Gaps = 22/147 (14%)

Query: 359 DADEYVC----RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG 414
            A +++C        + G           + P  +             G+ +        
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGK---SDLIVRVGDEIR----LLC 58

Query: 415 YPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV 474
                + W  +                +        A   +T  Y    ++ L      +
Sbjct: 59  TDPGFVKWTFEI--------LDETNENKQNEWITEKAEATNTGKYTCTNKHGLS---NSI 107

Query: 475 KIQISDRPDPPQFPTVEDIGHDSLALV 501
            + + D               D+  LV
Sbjct: 108 YVFVRDPAKLFLVDRSLYGKEDNDTLV 134

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  133 bits (336), Expect = 2e-34
 Identities = 44/220 (20%), Positives = 73/220 (33%), Gaps = 13/220 (5%)

Query: 262 FRVYAQNEAG--LSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAIQNHNAQFQCTITG 318
           +     N       L       ++    M    P+I V       A +    + +C   G
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 231

Query: 319 CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 378
            P PTI W +   +          + G    L I +    DA  Y C A N  G    K 
Sbjct: 232 NPVPTILWRRADGKPIARKARRHKSNG---ILEIPNFQQEDAGSYECVAENSRGKNVAKG 288

Query: 379 ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE 438
           +L     P +          +    E+V  +    G PKP   W ++ + + +     +E
Sbjct: 289 QLTFYAQPNWVQIIN---DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE 345

Query: 439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
                  L I   +  D   Y+ VAEN  G+  +  ++ +
Sbjct: 346 QGT----LNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  106 bits (265), Expect = 5e-25
 Identities = 46/236 (19%), Positives = 68/236 (28%), Gaps = 33/236 (13%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAIQNHNAQFQCTIT-GCPKPT 323
           A N  G    +  S   +++    A             +  +       C       + +
Sbjct: 82  ATNSFG----TIVSREAKLQ---FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELS 134

Query: 324 ISWLKGSREITP-SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG---VKSTKAE 379
            +W+         + R      G    L I  V   D   Y C   N      V      
Sbjct: 135 YAWIFNEYPSYQDNRRFVSQETG---NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTP 191

Query: 380 LIIMT-------APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN-EVIES 431
           LI+          PK  V       A  +KG  V ++    G P P I W R + + I  
Sbjct: 192 LILRNDGVMGEYEPKIEVQFPETVPA--EKGTTVKLECFALGNPVPTILWRRADGKPIAR 249

Query: 432 GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
               H        IL I +    D   Y  VAEN  G + A  ++        P +
Sbjct: 250 KARRHKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY---AQPNW 298

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  102 bits (257), Expect = 6e-24
 Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 16/202 (7%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
             ++ PL      +    +  C + G PKP I W     ++             +  LI 
Sbjct: 13  SHVMFPL----DSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS-LLIN 67

Query: 353 NSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-I 410
           N     DA  Y C A N  G + S +A+L       F      R T    +G+ +V+   
Sbjct: 68  NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRT--RSTVSVRRGQGMVLLCG 125

Query: 411 PFTGYPKPKITWYRDNE-VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
           P     +    W  +     +    F  + +     L I      D   Y  V  N +  
Sbjct: 126 PPPHSGELSYAWIFNEYPSYQDNRRFVSQET---GNLYIAKVEKSDVGNYTCVVTNTVTN 182

Query: 470 D---SAIVKIQISDRPDPPQFP 488
                    + + +     ++ 
Sbjct: 183 HKVLGPPTPLILRNDGVMGEYE 204

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 96.1 bits (239), Expect = 1e-21
 Identities = 78/385 (20%), Positives = 124/385 (32%), Gaps = 58/385 (15%)

Query: 21  GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SG 79
           G+    +    NG  V     F+++V+D  ++I     + +DAG Y    +NS G++ S 
Sbjct: 34  GNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLI-NNPNKTQDAGTYQCIATNSFGTIVSR 92

Query: 80  TFTINITGLPGPPIGPLDVSEITK-HTCTLHWNPPKYDGGLKVT-------HYVVERRDI 131
              +    L            + +     L   PP + G L           Y   RR +
Sbjct: 93  EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV 152

Query: 132 SMPH---WICIST-------TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI 181
           S      +I           TC  T  +      G      +      G   P      I
Sbjct: 153 SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEP-----KI 207

Query: 182 KAKSPYDKPSPPGIPVVTQ--VGGD-FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQR 238
           + + P   P+  G  V  +    G+    + W +     G  I          G      
Sbjct: 208 EVQFPETVPAEKGTTVKLECFALGNPVPTILWRR---ADGKPIARKARRHKSNGI----- 259

Query: 239 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP 298
                     + IPN  +     +   A+N  G    + A   +          P  +  
Sbjct: 260 ----------LEIPNFQQEDAGSYECVAENSRG---KNVAKGQLTFYAQ-----PNWVQI 301

Query: 299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
           + + +     +  ++C   G PKPT  WLK    +    R  I    +  TL I  V   
Sbjct: 302 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLS 357

Query: 359 DADEYVCRAVNKGGVKSTKAELIIM 383
           DA  Y C A NK GV  + AEL ++
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELSVI 382

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 2/106 (1%)

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
           + P F   P         + + V +     G PKP I W  +   ++ G  F     +  
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD-G 62

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFP 488
           ++L        D   Y+ +A N  G   S   K+Q +   +     
Sbjct: 63  SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRT 108

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
            N +++   ++   +    G         KNG  + + DR +       + I    +   
Sbjct: 302 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE--QGTLNI--TIVNLS 357

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITG 87
           DAG Y     N  G +  +  +++  
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELSVIA 383

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 5/110 (4%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTK-NGRVVQSDDRFKFTVLDDYIIIFIKEIR 59
            P  +   +G   K++ F  G+    +   + +G+ +    R       + I+  I   +
Sbjct: 211 FPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR---HKSNGILE-IPNFQ 266

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
           +EDAG Y     NS G       +     P       D+    + +    
Sbjct: 267 QEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWE 316

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  135 bits (342), Expect = 2e-34
 Identities = 56/514 (10%), Positives = 125/514 (24%), Gaps = 82/514 (15%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
             A+ +    +  +++       +          +     F        + + I ++ + 
Sbjct: 55  AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTET 113

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHT---CTLHWNPPKYDGG 118
            AG+Y + + + + + +  FT++I       +      ++       C     P      
Sbjct: 114 QAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPE----- 168

Query: 119 LKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
             V   + + +  S                ++  L           A NE G        
Sbjct: 169 PIVEWVLCDSQGESCKEESPAVVK--KEEKVLHELFGTD---IRCCARNELG-----REC 218

Query: 179 NPIKAKSPYDKPSPPGIPVVTQVGGDF------------VNLSWDKPLDDGGSRIQGYWI 226
             +        P      +  +VG                 L+W+              +
Sbjct: 219 TRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE---------NKAL 269

Query: 227 DKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 286
           ++      +    N  +       + ++       +   +            S  V I +
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS------QSALVTIVE 323

Query: 287 PMAAKAPEIIVPLRNAN--AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE 344
                   I     + +    Q     F       P+   +W    +      +      
Sbjct: 324 K-----GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD--- 375

Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGE 404
            + Y++     +     EY+  A N     +    L I         P+        +  
Sbjct: 376 -NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI------RRKPQV-----LAEAS 423

Query: 405 NVVVKIPFTGYPKPKITWYR--------DNEVIESGGHFHVETSERHAI---LTIRDASN 453
                    GYP P  TW +          E+ E   +               T+  +  
Sbjct: 424 ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEA 483

Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
           +     +  A N LG     + +     P P  F
Sbjct: 484 IKGFLVKCCAYNSLGTSCETILLNS---PGPFPF 514

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  115 bits (289), Expect = 2e-27
 Identities = 36/309 (11%), Positives = 92/309 (29%), Gaps = 21/309 (6%)

Query: 266 AQNEAGLSLPSS----ASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 321
             N++ +   SS    + +   +   +  ++   +          + +   Q  +     
Sbjct: 18  KNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGN 77

Query: 322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 381
            +  W+     +       +   G   +++I  +    A EY+    ++    +    + 
Sbjct: 78  ISCLWVFKHSSLNCQPHFDLQNRGVV-SMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136

Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
           I     + +   +             +       P+P + W   +   ES      E S 
Sbjct: 137 IRNTLLYTLRRPYFRKM----ENQDALVCISESVPEPIVEWVLCDSQGESCK----EESP 188

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQFPTVEDIGHDSLAL 500
                  +    +     R  A N+LG   + +  I ++  P          +G + L +
Sbjct: 189 AVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVG-EPLWI 247

Query: 501 VWRAPIWDGGSNIT----NYIVEKREHPMSSWIRVGNT--RFTTMAITGLSPGHQYEFRV 554
             +A   + G  +T    N  +E+  +   S      T  R     ++ ++      +  
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307

Query: 555 YAENVYGRS 563
            +     +S
Sbjct: 308 SSSKHPSQS 316

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
                 I + +     + +     +  + T + +    + +     LD+   I      K
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK----GLDNGYSISKFCNHK 387

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINITGLP 89
              G+Y  +  N     +  FT+NI   P
Sbjct: 388 HQPGEYIFHAENDDAQFTKMFTLNIRRKP 416

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score =  136 bits (342), Expect = 3e-34
 Identities = 40/260 (15%), Positives = 64/260 (24%), Gaps = 18/260 (6%)

Query: 31  KNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPG 90
           ++     S   FKF   +   +   +       G  +                     P 
Sbjct: 275 EDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPP 334

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC-----------I 139
                L  +        L W PP+  GG +   Y V           C            
Sbjct: 335 SAPHYL-TAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEP 393

Query: 140 STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT 199
                 T+  V  L     Y F V A N              +  S     + P    + 
Sbjct: 394 PHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSR---SFRTASVSINQTEPPKVRLE 450

Query: 200 QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQ 259
                 +++SW  P      R+  Y +   + G       NV       + + +L     
Sbjct: 451 GRSTTSLSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSY--NVRRTEGFSVTLDDLAPDTT 507

Query: 260 YEFRVYAQNEAGLSLPSSAS 279
           Y  +V A  + G    S   
Sbjct: 508 YLVQVQALTQEGQGAGSKVH 527

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 86.0 bits (212), Expect = 8e-18
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 459 YRVVAENDLGMDSAIVKIQ---ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN 515
           + V A N +         +   +S     P    +E     SL++ W  P       +  
Sbjct: 415 FTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWK 473

Query: 516 YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           Y V  R+   S+   V  T   ++ +  L+P   Y  +V A    G+   S   +  T
Sbjct: 474 YEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 531

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 77.9 bits (191), Expect = 3e-15
 Identities = 27/164 (16%), Positives = 36/164 (21%), Gaps = 12/164 (7%)

Query: 422 WYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
              D     S G F  E SE   +                  E                R
Sbjct: 273 KVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTR 332

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW------------I 529
           P               + L W  P   GG     Y V   +    S              
Sbjct: 333 PPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE 392

Query: 530 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
                  T++ ++ L P   Y F V A N       S +    +
Sbjct: 393 PPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTAS 436

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 70.6 bits (172), Expect = 5e-13
 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 10/121 (8%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN------- 240
            +P      +     G  V L W  P D GG     Y +   +   ++ +          
Sbjct: 331 TRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRY 390

Query: 241 ---VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV 297
                    + + + +L     Y F V A+N     + S +  +  +           + 
Sbjct: 391 SEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLE 450

Query: 298 P 298
            
Sbjct: 451 G 451

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  128 bits (323), Expect = 4e-34
 Identities = 40/232 (17%), Positives = 73/232 (31%), Gaps = 25/232 (10%)

Query: 278 ASNSVQIKDPMAAKAPEIIVPLRNANAIQN----HNAQFQCTITGCPKPTISWLKGSREI 333
           A + V  ++    +AP      +    +      +  +F+C   G P PT+ WLK  +E 
Sbjct: 2   AEDFVS-ENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60

Query: 334 TPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
               R   +      ++LI+ SV   D   Y C   N+ G  +    L ++   +   P 
Sbjct: 61  KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH-RPI 119

Query: 393 RFRD-----TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG------HFHVETSE 441
                    +     G +V          +P I W +  E   S        +  V    
Sbjct: 120 LQAGLPANASTVV--GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177

Query: 442 RHAI-----LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
                    L + + +  D   Y     N +G  +    + +  +   P   
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 88.0 bits (218), Expect = 7e-20
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
            +NE G     + +  + + +    +         NA+ +   + +F C +    +P I 
Sbjct: 95  VENEYGSI---NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQ 151

Query: 326 WLKGSRE-----------ITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 374
           W+K   +                +H      +   L + +V   DA EY+C+  N  G  
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211

Query: 375 STKAELIIMTAPKFNVPPRFRD 396
           +  A L ++   +   P R ++
Sbjct: 212 NQSAWLTVLPKQQA--PGREKE 231

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 61.5 bits (149), Expect = 8e-11
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 378 AELIIMTAPKFNVPPRFRDTAYFDK-------GENVVVKIPFTGYPKPKITWYRDNEVIE 430
           AE  +         P + +T   +K          V  + P  G P P + W ++ +  +
Sbjct: 2   AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 61

Query: 431 SGGHFHV-ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD--PPQF 487
                   +   +H  L +      D   Y  V EN+ G  +    + + +R    P   
Sbjct: 62  QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQ 121

Query: 488 PT 489
             
Sbjct: 122 AG 123

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFK-FTVLDDYIIIFIKEIRK 60
                +P  +  K +    G+    +   KNG+  + + R   + V + +  + ++ +  
Sbjct: 26  KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 85

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINITGLPG--PPI---GPLDVSEITKHTCTLH 109
            D G+YT  + N  GS++ T+ +++       P +    P + S +        
Sbjct: 86  SDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 139

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 9/72 (12%), Positives = 24/72 (33%)

Query: 21  GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
             +        +G       +       +  ++ +  + + DAG+Y   +SN  G  + +
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214

Query: 81  FTINITGLPGPP 92
             + +      P
Sbjct: 215 AWLTVLPKQQAP 226

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  130 bits (329), Expect = 2e-33
 Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 12/225 (5%)

Query: 261 EFRVYAQNEAGLSLPSSASNSVQIK--DPMAAKAPEIIVPLR---NANAIQNHNAQFQCT 315
           ++   A+     ++      ++++     +A + P  + P     +   ++  +   +C 
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245

Query: 316 ITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS 375
            +G P P I+W K   ++                L I +V   D+ EY C A NK G   
Sbjct: 246 ASGVPTPDIAWYKKGGDLPSDKAKFENFNK---ALRITNVSEEDSGEYFCLASNKMGSIR 302

Query: 376 TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF 435
               + +  AP +   P+         GE+  +     G PKP + W  + E ++S    
Sbjct: 303 HTISVRVKAAPYWLDEPK---NLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPN 359

Query: 436 HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
                     +  RD      A Y+    N+ G   A   + + D
Sbjct: 360 PNREVAGDT-IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  111 bits (280), Expect = 8e-27
 Identities = 51/255 (20%), Positives = 90/255 (35%), Gaps = 34/255 (13%)

Query: 251 IPNLIEGRQYEFR-VY---AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAI 305
           I     GR  E+   Y   A+N+ G    ++ SN ++++    +K+P      L      
Sbjct: 77  IDFRSGGRPEEYEGEYQCFARNKFG----TALSNRIRLQ---VSKSPLWPKENLDPVVVQ 129

Query: 306 QNHNAQFQCTIT-GCPKPTISWLKGSREITPS-ARHHIFAEGDTYTLIINSVYGVDAD-E 362
           +      QC    G P P I W+  S E      R      G    L  ++V   D   +
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG---DLYFSNVMLQDMQTD 186

Query: 363 YVCRAVNKGG----------VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF 412
           Y C A               +K      +    P F  P     +    +G +++++   
Sbjct: 187 YSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA 246

Query: 413 TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA 472
           +G P P I WY+    + S      +    +  L I + S  D+  Y  +A N +G    
Sbjct: 247 SGVPTPDIAWYKKGGDLPSD---KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH 303

Query: 473 IVKIQISDRPDPPQF 487
            + +++      P +
Sbjct: 304 TISVRVK---AAPYW 315

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  102 bits (256), Expect = 1e-23
 Identities = 46/246 (18%), Positives = 73/246 (29%), Gaps = 26/246 (10%)

Query: 272 LSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAIQNHNAQFQCTITGCPKPTISWLKGS 330
           + +P   S   ++  P     P I     ++       N   +C   G P P+  W + S
Sbjct: 1   IEIPMDPSIQNELTQP-----PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNS 55

Query: 331 REITPSARHHIFAEGDTYTLIINSVYG----VDADEYVCRAVNK-GGVKSTKAELIIMTA 385
           R    +    +     + TL+I+   G        EY C A NK G   S +  L +  +
Sbjct: 56  RFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS 115

Query: 386 PKFNVPPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDN-EVIESGGHFHVETSERH 443
           P +  P    D     +G  + ++  P  G P P I W   + E I          +   
Sbjct: 116 PLW--PKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN--- 170

Query: 444 AILTIRDASNVDT-APYRVVAENDLGMDSA-------IVKIQISDRPDPPQFPTVEDIGH 495
             L   +    D    Y   A                 V          P F   +    
Sbjct: 171 GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTAS 230

Query: 496 DSLALV 501
             + L 
Sbjct: 231 SQMVLR 236

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 3/108 (2%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
            ++  +  G +  ++   +G    +++  K G  + SD   K    +    + I  + +E
Sbjct: 229 ASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD---KAKFENFNKALRITNVSEE 285

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH 109
           D+G+Y    SN  GS+  T ++ +   P     P ++         L 
Sbjct: 286 DSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLV 333

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
           P  L +  G++ ++     G+    V    NG  +QS        +    II  ++ +  
Sbjct: 319 PKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTII-FRDTQIS 377

Query: 62  DAGDYTVNLSNSSGSVSGTFTINI 85
               Y  N SN  G +     +++
Sbjct: 378 SRAVYQCNTSNEHGYLLANAFVSV 401

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score =  122 bits (308), Expect = 3e-33
 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 2/108 (1%)

Query: 468 GMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS 527
           G   A +   +S  PD P  P + +   +SL L W+AP  D GS I N+++E  E   + 
Sbjct: 4   GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNG 62

Query: 528 -WIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            + +          IT LSP    +FR+ A N YG S  S      T+
Sbjct: 63  EFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 110

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score =  104 bits (260), Expect = 9e-27
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           SSGS        ++  P  P  P  ++  TK++ TL W  P  D G K+ ++V+E  +  
Sbjct: 2   SSGSSGAEIFTTLSCEPDIPNPPR-IANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGK 59

Query: 133 MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
                C         F +  L+      F + A N+ G     E +    +       S 
Sbjct: 60  GNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS-----GCSG 114

Query: 193 PG 194
           P 
Sbjct: 115 PS 116

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 95.9 bits (239), Expect = 6e-24
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
           G              +   +P  P  P +     + + L W  P  D GS+IQ + ++  
Sbjct: 1   GSSGSSG---AEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWD 56

Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           E G    +     + +  Q  I  L      +FR+ A+N+ G S  S   
Sbjct: 57  E-GKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEV 105

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  130 bits (328), Expect = 3e-33
 Identities = 47/232 (20%), Positives = 72/232 (31%), Gaps = 17/232 (7%)

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASN----SVQIKDPMAAKAPEIIVPLRNANAIQ 306
           I          +  +A +       S  S     S+  +D              +  A+ 
Sbjct: 162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALT 221

Query: 307 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
                 +C   G P P I W K     T               L I +V   D   Y C 
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSS------EPLLHIQNVDFEDEGTYECE 275

Query: 367 AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 426
           A N  G  + +  +II   P +            D G ++      +G P+P + W RD 
Sbjct: 276 AENIKGRDTYQGRIIIHAQPDWLDVIT---DTEADIGSDLRWSCVASGKPRPAVRWLRDG 332

Query: 427 EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           + + S     V   E    L        D+  Y+ VAEN  G   A  ++ +
Sbjct: 333 QPLASQNRIEVSGGE----LRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  106 bits (265), Expect = 6e-25
 Identities = 45/232 (19%), Positives = 68/232 (29%), Gaps = 25/232 (10%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTI 324
           A N  G    +  S    ++                    +     F C+     P  + 
Sbjct: 81  ATNARG----TVVSREASLR--FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSY 134

Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG-----VKSTKAE 379
            WL         A    F    T  L I      D   Y C A +        V S  ++
Sbjct: 135 RWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQ 194

Query: 380 LIIMTAPKFNVPPRFRDTAYFD----KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF 435
           L +         P  +     D     G+ V ++    G P P+I W + +    S    
Sbjct: 195 LSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS---- 250

Query: 436 HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
              +SE    L I++    D   Y   AEN  G D+   +I I      P +
Sbjct: 251 KWLSSEPL--LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH---AQPDW 297

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  104 bits (260), Expect = 2e-24
 Identities = 37/210 (17%), Positives = 57/210 (27%), Gaps = 13/210 (6%)

Query: 292 APEIIVPLRNANAIQNH---NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
            P       +    +          C     P  T  W     E+               
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD- 62

Query: 349 TLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
            +I N V   DA  Y C A N  G V S +A L      +F+     RD     +G  V+
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEE--RDPVKITEGWGVM 120

Query: 408 VK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
               P   YP     W  +              S+    L I      D   Y   A + 
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 180

Query: 467 LGMD-----SAIVKIQISDRPDPPQFPTVE 491
           +        S   ++ ++        P+++
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIK 210

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 95.7 bits (238), Expect = 2e-21
 Identities = 61/383 (15%), Positives = 124/383 (32%), Gaps = 56/383 (14%)

Query: 21  GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SG 79
            + P       NG  ++     ++ ++   ++I    ++ +DAG Y    +N+ G+V S 
Sbjct: 33  ANPPATYRWKMNGTELKMGPDSRYRLVAGDLVI-SNPVKAKDAGSYQCVATNARGTVVSR 91

Query: 80  TFTINITGLPGPPIGPLDVSEITK-HTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC 138
             ++    L        D  +IT+        +PP +   L    +++      +P    
Sbjct: 92  EASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYR-WLLNEFPNFIPADGR 150

Query: 139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM----------------GPPLEGINPIK 182
              +       +          +   A +                        +    IK
Sbjct: 151 RFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIK 210

Query: 183 AKSPYDKPSPPGIPVVTQ--VGGD-FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239
           AK P D  +  G  V  +    G+    + W K     GS+          + S+     
Sbjct: 211 AKFPADTYALTGQMVTLECFAFGNPVPQIKWRK---LDGSQT------SKWLSSE----- 256

Query: 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL 299
                    ++I N+    +  +   A+N  G     +    + I        P+ +  +
Sbjct: 257 -------PLLHIQNVDFEDEGTYECEAENIKG---RDTYQGRIIIHAQ-----PDWLDVI 301

Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
            +  A    + ++ C  +G P+P + WL+  + +    R  +        L  + +   D
Sbjct: 302 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLED 357

Query: 360 ADEYVCRAVNKGGVKSTKAELII 382
           +  Y C A NK G     AEL +
Sbjct: 358 SGMYQCVAENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 25/195 (12%), Positives = 48/195 (24%), Gaps = 10/195 (5%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
            P F   P           E V +       P     W  +   ++ G            
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-GD 62

Query: 445 ILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWR 503
           ++        D   Y+ VA N  G + S    ++     +            +   +++ 
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122

Query: 504 APIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA-----ITGLSPGHQYEFRVYAEN 558
                    ++ Y     E P  ++I     RF +       I          +  +A +
Sbjct: 123 CSPPPHYPALS-YRWLLNEFP--NFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS 179

Query: 559 VYGRSDPSTTSDLIT 573
                  S  S    
Sbjct: 180 HIDFITKSVFSKFSQ 194

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
                   G + +     +G     V   ++G+ + S +R +  V    +     ++  E
Sbjct: 301 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIE--VSGGELRF--SKLVLE 356

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITG 87
           D+G Y     N  G+V  +  + +  
Sbjct: 357 DSGMYQCVAENKHGTVYASAELTVQA 382

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  125 bits (316), Expect = 3e-33
 Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 16/211 (7%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS---ARHHIFAEGD- 346
           ++P II    +    +N  A   C + G P+PTI W K    ++ +   +    F +G  
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMT-APKFNVPPRFRDTAYFDKGE 404
            +   +      D  EY C A N+ G   S  A L I      F V P+        KGE
Sbjct: 68  FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK---DTRVAKGE 124

Query: 405 NVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-----LTIRDASNVDTAP 458
             +++  P  G P+P + W +D   ++         S R  I     L I +   +D   
Sbjct: 125 TALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGN 184

Query: 459 YRVVAENDLG-MDSAIVKIQISDRPDPPQFP 488
           Y+ +A+N +G  +S+  K+ +  +       
Sbjct: 185 YKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 82.6 bits (204), Expect = 4e-18
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT-ITGCPKPTI 324
           A+N  G ++  S   S+QI    A    +  V  ++    +   A  +C    G P+PT+
Sbjct: 88  AKNRVGQAV--SRHASLQI----AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTL 141

Query: 325 SWLKGSREITPSARHHIFAEG-----DTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKA 378
            W+K    +         A       D   L+I++V  +D   Y C A N  G  +S+ A
Sbjct: 142 IWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYA 201

Query: 379 ELIIMTAPKFNVPPR 393
           +LI+      +    
Sbjct: 202 KLIVQVKAAAHHHHH 216

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score =  121 bits (306), Expect = 5e-33
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           SSGS            PG P+ P    +I  H+  + W+PPK +GG  +  YVVE  + S
Sbjct: 2   SSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGS 61

Query: 133 MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
             +   +  +      +   L  G  Y   V  +++ G     E    +  ++P      
Sbjct: 62  NGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSE---SLLVQTPAVSGPS 118

Query: 193 PG 194
            G
Sbjct: 119 SG 120

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score =  115 bits (290), Expect = 7e-31
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 2/109 (1%)

Query: 468 GMDSAIVKIQISDRPDPPQFPTV-EDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP-M 525
           G    +      D+P  P  P+V   I   S  + W  P  +GG+ I  Y+VE  E    
Sbjct: 4   GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63

Query: 526 SSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           + W  + +          L+PG  Y  RVY  +  G+S  S +  + T 
Sbjct: 64  NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP 112

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 96.0 bits (239), Expect = 7e-24
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 8/125 (6%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIP-VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDK 228
           G          ++  +  DKP  P  P V  ++      ++WD P D+GG+ I  Y ++ 
Sbjct: 1   GSSGSSG---VVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEM 57

Query: 229 HEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPM 288
            E  +     + +   A  +     L  G  Y  RVY  ++ G S     S S+ ++ P 
Sbjct: 58  AEGSNGNKWEM-IYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAV---SESLLVQTPA 113

Query: 289 AAKAP 293
            +   
Sbjct: 114 VSGPS 118

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score =  125 bits (316), Expect = 5e-33
 Identities = 48/225 (21%), Positives = 76/225 (33%), Gaps = 15/225 (6%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
            G P  P +           +W PP    G K   Y V+                   + 
Sbjct: 6   LGAPQNP-NAKAAGSRKIHFNWLPPS---G-KPMGYRVKYWIQGDSESEAHLLDSKVPSV 60

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNL 208
            +  L    +Y   V A    G GP       +  ++  + PS PG      V      L
Sbjct: 61  ELTNLYPYCDYEMKVCAYGAQGEGPYSS---LVSCRTHQEVPSEPGRLAFNVVSSTVTQL 117

Query: 209 SWDKPLDDGGSRIQGYWIDKHEVGSD-----AWQRVNVAICAPSQINIPNLIEGRQYEFR 263
           SW +P +  G  I  Y +    V  D       ++V V       + I NL E + Y + 
Sbjct: 118 SWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT 176

Query: 264 VYAQNEAGLSLPSSASNSVQIKDPMAAKAPEII-VPLRNANAIQN 307
           V A+N AG      A  ++  +       P I  +P+ +A + ++
Sbjct: 177 VKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGED 221

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 73.7 bits (181), Expect = 5e-15
 Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 28/178 (15%)

Query: 412 FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEND 466
             GY   ++ ++   +         +++      LT       +  PY     +V A   
Sbjct: 33  PMGY---RVKYWIQGD--SESEAHLLDSKVPSVELT-------NLYPYCDYEMKVCAYGA 80

Query: 467 LGM--DSAIVKIQ-ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH 523
            G    S++V  +   + P  P       +      L W  P    G  IT Y V     
Sbjct: 81  QGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYEVCYGLV 139

Query: 524 -----PMSSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                P+    +V   N +   + I  L     Y + V A N  G          + T
Sbjct: 140 NDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLAT 197

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 64.8 bits (158), Expect = 5e-12
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW-IRVGNTRFTTMA 540
              PQ P  +  G   +   W  P          Y V+      S     + +++  ++ 
Sbjct: 6   LGAPQNPNAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVE 61

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGE 577
           +T L P   YE +V A    G    S+     T    
Sbjct: 62  LTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEV 98

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  126 bits (318), Expect = 1e-32
 Identities = 43/220 (19%), Positives = 78/220 (35%), Gaps = 13/220 (5%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
              E G    S A+ +V+I                     +  +A   C +     PTI 
Sbjct: 81  VTAEDGTQ--SEATVNVKIFQK-----LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTII 133

Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG--VKSTKAELIIM 383
           W    R++            +   L I  +   D   Y C         +     ++I+ 
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE--TSE 441
             P         +    + G++V +     G+P+P ++W +D E IE+      +   S+
Sbjct: 193 VPPTVQARQSIVNA-TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 251

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
             + LTIR+    D A Y  +AEN  G   A + +++  +
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  118 bits (296), Expect = 9e-30
 Identities = 38/202 (18%), Positives = 60/202 (29%), Gaps = 10/202 (4%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPK-PTISWLKGSREITPSARHHI---FAEGD 346
           +  ++ +           +  F C + G  K   ISW   + E     +  I   + + D
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGEN 405
           + TL I +    DA  Y C    + G +      + I     F   P       F +GE+
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKEGED 117

Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
            V+         P I W      +             +  L IR     D   YR     
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRI 176

Query: 466 DLGMDSAIVKIQISDRPDPPQF 487
               +     IQ+     PP  
Sbjct: 177 LARGEINFKDIQVIVN-VPPTV 197

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 5/112 (4%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
           P      EG++  +        P  +     GR V      +F VL +  +  I+ I+K 
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL-QIRGIKKT 165

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITGLPGPPI----GPLDVSEITKHTCTLH 109
           D G Y       +        I +     P +      ++ +     + TL 
Sbjct: 166 DEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLV 217

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  126 bits (318), Expect = 1e-32
 Identities = 31/239 (12%), Positives = 69/239 (28%), Gaps = 25/239 (10%)

Query: 261 EFRVYAQNEAG-----LSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT 315
            +     +  G     L         + +          +   L      +     +   
Sbjct: 72  IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131

Query: 316 ITGCPKPTISWLKGSREITPSARHHIFAEGDT--YTLIINSVYGVDADEYVCRAVNKGGV 373
                   ++++   +EI    ++ +  + +T    + +  +   D   Y  +  +    
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT 191

Query: 374 KSTKAELIIMTAPKFNVPPRFRDTAYFDK---------------GENVVVKIPFTGYPKP 418
             +   L+     K      F+   +  K                 NV++K       K 
Sbjct: 192 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE 251

Query: 419 -KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI 476
             I WY+D   I        +  +    L I + S  D   Y V+ ++D G D + +K+
Sbjct: 252 THIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  125 bits (316), Expect = 3e-32
 Identities = 26/215 (12%), Positives = 61/215 (28%), Gaps = 13/215 (6%)

Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT 349
              P     + N +     +  F+C     PK   SW K       S R  + ++G+   
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59

Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYF--------- 400
           +    +   D   Y C   +  G+ S+             +    +              
Sbjct: 60  MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119

Query: 401 -DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF--HVETSERHAILTIRDASNVDTA 457
            +KG+              K+ +  + + I  G  +  H++ +     + +    + D  
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 179

Query: 458 PYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
            Y    ++    + + V +         +    + 
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 214

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 86.2 bits (213), Expect = 1e-18
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 15/144 (10%)

Query: 251 IPNLIEGRQYEFRVYAQNEAG-----------LSLPSSASNSVQIKDPMAAKAPEIIVPL 299
           +  L +  +  +    Q+              +          Q ++ +  + P  +  L
Sbjct: 170 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 229

Query: 300 RNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
            +       N   +C +    K T I W K  REI+   +H    +    TL+I      
Sbjct: 230 -SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKK 286

Query: 359 DADEYVCRAVNKGGVKSTKAELII 382
           DA  Y     +  G   ++ +L+ 
Sbjct: 287 DAGIYEVILKDDRGKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 53.1 bits (127), Expect = 9e-08
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 9/116 (7%)

Query: 21  GDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAGDYTVNLSNSSGSVS 78
                +V+   N + +    ++K  +  +   I +F+++++ ED G YT  L +   +  
Sbjct: 134 LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH 193

Query: 79  GTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP 134
            T       L G     L      +    +    P +   L     V    ++ + 
Sbjct: 194 STVV-----LVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE--VTGECNVLLK 242

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 7   IPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGD 65
           +    N  +K   A  +    +   K+ R +  D++  F   D    + I E  K+DAG 
Sbjct: 233 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGI 290

Query: 66  YTVNLSNSSGSVSGTFTINITG 87
           Y V L +  G       +    
Sbjct: 291 YEVILKDDRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 21 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
               E S +K+    +   R +     +   +  K++  +D G Y+ +++++ G  S  
Sbjct: 28 MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSY 87

Query: 81 FT 82
            
Sbjct: 88 LI 89

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  123 bits (310), Expect = 2e-32
 Identities = 50/211 (23%), Positives = 73/211 (34%), Gaps = 18/211 (8%)

Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH--IFAEGDT 347
           A  PEII   +N        A F C   G P P+I W K  ++++ +   +  +   G  
Sbjct: 4   AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63

Query: 348 YTLIINSVYGV-DADEYVCRAVNK-GGVKSTKAELIIMT-------APKFNVPPRFRDTA 398
             L I  V    D   Y C A N  G   S  A L I          P     P  R   
Sbjct: 64  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123

Query: 399 YFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAP 458
               G  V++     G P P I W ++   ++     +         L I ++   D   
Sbjct: 124 ---VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD---GFLQIENSREEDQGK 177

Query: 459 YRVVAENDLGMD-SAIVKIQISDRPDPPQFP 488
           Y  VAEN +G + S    + +  R    +  
Sbjct: 178 YECVAENSMGTEHSKATNLYVKVRRVGTKHH 208

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  105 bits (264), Expect = 3e-26
 Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 4/128 (3%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
           A+N  G ++ + A+ ++   D   A  P I            H     C   G P P I 
Sbjct: 84  AENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIY 143

Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMT 384
           W+K   ++  S   +   +G    L I +    D  +Y C A N  G   S    L +  
Sbjct: 144 WIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200

Query: 385 APKFNVPP 392
                   
Sbjct: 201 RRVGTKHH 208

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  121 bits (304), Expect = 7e-32
 Identities = 36/193 (18%), Positives = 57/193 (29%), Gaps = 9/193 (4%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPK-PTISWLKGSREITPSARHHI---FAEGD 346
           +  ++ +           +  F C + G  K   ISW   + E     +  I   + + D
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 347 TYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGEN 405
           + TL I +    DA  Y C    + G        + I     F   P       F +GE+
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKEGED 117

Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
            V+         P I W      +             +  L IR     D   YR     
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRI 176

Query: 466 DLGMDSAIVKIQI 478
               +     IQ+
Sbjct: 177 LARGEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 84.5 bits (209), Expect = 5e-19
 Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 8/119 (6%)

Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTI 324
               E G    ++ +  +  K                    +  +A   C +     PTI
Sbjct: 80  VVTAEDGTQSEATVNVKIFQK-------LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132

Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
            W    R++            +   L I  +   D   Y C        +    ++ ++
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 21  GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
              P  +     GR V      +F VL +  +  I+ I+K D G Y       +      
Sbjct: 126 SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-IRGIKKTDEGTYRCEGRILARGEINF 184

Query: 81  FTINIT 86
             I + 
Sbjct: 185 KDIQVI 190

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score =  117 bits (295), Expect = 1e-31
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTM 539
              PQ  TVED+   +  L WR P   G   I  Y+VE        W+            
Sbjct: 9   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            +  L  G +  FRV   N+ GRS+P+T    +T 
Sbjct: 69  TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI 103

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score =  114 bits (288), Expect = 1e-30
 Identities = 27/101 (26%), Positives = 38/101 (37%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
            S P    V  V      L W  P   G   I GY ++    GS+ W   N         
Sbjct: 9   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
            + +L  G +  FRV   N AG S P++    V I++   +
Sbjct: 69  TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPS 109

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score =  106 bits (266), Expect = 1e-27
 Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCH 144
           +G    P   L V ++T  T TL W PP   G   +  Y+VE        W+        
Sbjct: 6   SGPTSAP-QHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVE 64

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
              F V+ L  G   LF V+ VN  G   P   + P+  +         G
Sbjct: 65  RCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRES---GPSSG 111

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score =  117 bits (295), Expect = 1e-31
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI 529
            S+     +SD P PP  P V D+  +S+ L W+     G    + YI+E     +S+  
Sbjct: 4   GSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSW 62

Query: 530 RVGNT--RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           +      + T   + GL P   Y F V A N  G SDPS  SD + T
Sbjct: 63  QTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT 109

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score =  115 bits (289), Expect = 8e-31
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 76  SVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP- 134
           S S     +++ LPGPP  P  V+++TK++ TL W P    G L  + Y++E    S+  
Sbjct: 3   SGSSGKNYDLSDLPGPPSKPQ-VTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSN 60

Query: 135 HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
            W  ++     T + V+GL     YLF V A+N  G+  P    +P++ +   D     G
Sbjct: 61  SWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ---DSGPSSG 117

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score =  101 bits (254), Expect = 5e-26
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 1/103 (0%)

Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
              D P PP  P VT V  + V LSW +P   G      Y I+          +      
Sbjct: 11  DLSDLPGPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHV 69

Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
             +   +  L     Y F V A N  GLS PS  S+ V+ +D 
Sbjct: 70  KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score =  117 bits (295), Expect = 1e-31
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
             PPG PV   +    V L W KP   GG +I  Y ++K ++ +  W + N +    ++ 
Sbjct: 11  IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70

Query: 250 NIPNLIEGRQYEFRVYAQNEAG-LSLPSSASNSVQIKDPMAA 290
            +  L E   YEFRV A+N AG +S PS  S+++  +D + A
Sbjct: 71  TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score =  114 bits (287), Expect = 2e-30
 Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTM 539
            DPP  P   +I   ++ L W  P + GG  IT+YIVEKR+ P   W++    N      
Sbjct: 11  IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70

Query: 540 AITGLSPGHQYEFRVYAENVYGR-SDPSTTSDLITT 574
            ++GL+    YEFRV A+N  G  S PS  SD IT 
Sbjct: 71  TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC 106

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score =  102 bits (255), Expect = 4e-26
 Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTT 147
             PP  P+    IT+HT TL W  P+Y GG K+T Y+VE+RD+    W+    +   +  
Sbjct: 11  IDPPGKPV-PLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 69

Query: 148 FIVQGLTEGQEYLFHVMAVNENG-MGPPLEGINPIKAKSPYD 188
           F V GLTE   Y F V+A N  G + PP E  + I  +   +
Sbjct: 70  FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVE 111

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  124 bits (312), Expect = 4e-31
 Identities = 43/222 (19%), Positives = 76/222 (34%), Gaps = 17/222 (7%)

Query: 261 EFRVYAQNEAGLSLPSSAS-NSVQIKDPMAAKAPEIIVPL-RNANAIQNHNAQFQCTITG 318
            ++   ++        SA+   + I +P+++ AP     + +    +  H     C   G
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238

Query: 319 CPKPTISWLKGSREITPSARHHIFAEGDTY--TLIINSVYGVDADEYVCRAVNKGGVKST 376
            P P+  W K     T      +         TLII      D+ +Y+C   N  G +S 
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298

Query: 377 KAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH 436
           +  L +       + P    T   D G   V    +TG P   ++W +D + I       
Sbjct: 299 ETVLTVTAPLSAKIDPP---TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES-- 353

Query: 437 VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
                   +L I      D   Y+    ND     A  ++++
Sbjct: 354 --------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  107 bits (268), Expect = 2e-25
 Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 31/240 (12%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI---TGCPKP 322
           A+N+ G    S  S  V ++   A  A      +   + I+ ++A  +C I         
Sbjct: 84  ARNQFG----SIISRDVHVR---AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE 136

Query: 323 TISWLKGSRE-----ITPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRAVNKGG---V 373
            +SW     E          ++ +   G    L I  V   D    Y CR  ++      
Sbjct: 137 VVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETR 193

Query: 374 KSTKAELIIMTAPKFNVPPR----FRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 429
            S     +++T P  +  PR     +          + +  P  G+P P   WY+  E  
Sbjct: 194 LSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGT 253

Query: 430 ESG--GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
                   +    +    L I+DA   D+  Y  V  N +G +S    + ++    P   
Sbjct: 254 TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT---APLSA 310

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 89.2 bits (221), Expect = 3e-19
 Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 31/223 (13%)

Query: 291 KAPEIIV-PLRNANAIQNHNAQFQCTITGCPKPTISWLK--GSREITPSARHHIFAEGDT 347
           K P  +  P    +   +  A+ +C  +G P P I W++  G+          I ++G  
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-- 59

Query: 348 YTLIINSVYG------VDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYF 400
             L+            V A  Y C A N+ G + S    +  + A  +          + 
Sbjct: 60  -KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVN---KEHV 115

Query: 401 DKGENVVVK---IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-----LTIRDAS 452
            +G + V+K     F       ++W+ D E          E   ++ +     L IR+  
Sbjct: 116 IRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP---GAEYDGKYLVLPSGELHIREVG 172

Query: 453 NVDT-APYRVVAENDLGMD---SAIVKIQISDRPDPPQFPTVE 491
             D    Y+   ++ L  +   SA     +   P     P   
Sbjct: 173 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP 215

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 87.7 bits (217), Expect = 9e-19
 Identities = 61/416 (14%), Positives = 114/416 (27%), Gaps = 74/416 (17%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-----IK 56
            N +        +++   +G+   E+   ++      D      +  D  ++F       
Sbjct: 11  TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED 70

Query: 57  EIRKEDAGDYTVNLSNSSGSV-SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKY 115
             ++  A  Y     N  GS+ S    +                 I  ++  +    P +
Sbjct: 71  YRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSF 130

Query: 116 DGGLK-VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV----------- 163
                 V  +  +  +   P         +D  ++V  L  G+ ++  V           
Sbjct: 131 VADFVEVVSWHTDEEENYFPG------AEYDGKYLV--LPSGELHIREVGPEDGYKSYQC 182

Query: 164 MAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQ-----VGGDFVNL---------- 208
              +       L         +     S P  P + Q     +    ++L          
Sbjct: 183 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP 242

Query: 209 --SWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYA 266
              W K     G+        +  V +D  ++V+        + I + +     ++    
Sbjct: 243 SFRWYK--FIEGTTR-----KQAVVLNDRVKQVS------GTLIIKDAVVEDSGKYLCVV 289

Query: 267 QNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW 326
            N  G     S    + +  P         +            A F C  TG P  T+SW
Sbjct: 290 NNSVGGE---SVETVLTVTAP-----LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341

Query: 327 LKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           +K  + I  S             L I SV   D   Y C   N        AEL +
Sbjct: 342 MKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  123 bits (311), Expect = 4e-31
 Identities = 41/215 (19%), Positives = 70/215 (32%), Gaps = 15/215 (6%)

Query: 66  YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYV 125
           Y V++             +      PP   L  + I   T  + W PP     + +T+++
Sbjct: 71  YNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFL 127

Query: 126 VERRDISMPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
           V    +     +  +S +  D   ++  L  G EY+  V +V E     PL G       
Sbjct: 128 VRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG------- 180

Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
                   P     + +  +   + W  P     + I GY I  H        R +    
Sbjct: 181 RQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPH 236

Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           + + I + NL  G +Y   + A N    S      
Sbjct: 237 SRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQ 271

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  122 bits (307), Expect = 1e-30
 Identities = 48/223 (21%), Positives = 73/223 (32%), Gaps = 20/223 (8%)

Query: 66  YTVNLS--NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
           Y V++S        S             P G +D S+IT ++ T+HW  P       +T 
Sbjct: 162 YVVSVSSVYEQHE-STPLRGRQKTGLDSPTG-IDFSDITANSFTVHWIAP--RA--TITG 215

Query: 124 YVVERRDISMPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
           Y +                     +  +  LT G EY+  ++A+N     P L       
Sbjct: 216 YRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI------ 269

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
                     P    V       + +SWD P       ++ Y I   E G ++  +    
Sbjct: 270 -GQQSTVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTV 324

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
             + S   I  L  G  Y   VYA    G S  SS   S+  +
Sbjct: 325 PGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  111 bits (280), Expect = 5e-27
 Identities = 77/404 (19%), Positives = 120/404 (29%), Gaps = 70/404 (17%)

Query: 190 PSPP-GIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS- 247
            SPP  + +        + +SW++        I GY I            +   + A   
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPM-----AAKAPEIIV---PL 299
                NL  G +Y   VY   +   S+P S +    +  P            + V   P 
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPP 118

Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 359
            + + + N   ++           +S       I+PS    +       T          
Sbjct: 119 PSID-LTNFLVRYSPVKNEEDVAELS-------ISPSDNAVVLTNLLPGT---------- 160

Query: 360 ADEYVCR--AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV------VKIP 411
             EYV    +V +    ST       T       P      + D   N         +  
Sbjct: 161 --EYVVSVSSVYEQHE-STPLRGRQKTGL---DSPT--GIDFSDITANSFTVHWIAPRAT 212

Query: 412 FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEND 466
            TGY   +I  +             V  S     LT       +  P       +VA N 
Sbjct: 213 ITGY---RIR-HHPEHFSGRPREDRVPHSRNSITLT-------NLTPGTEYVVSIVALNG 261

Query: 467 LGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
              +S ++  Q S   D P+   V      SL + W AP       +  Y +   E   +
Sbjct: 262 RE-ESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGN 316

Query: 527 SWIRVG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTT 568
           S ++        +T  I+GL PG  Y   VYA    G S  S+ 
Sbjct: 317 SPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSK 360

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =   99 bits (249), Expect = 6e-23
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 15/193 (7%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC--HDT 146
             PP      +       T+ W          +T Y +     +      +        +
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFV 206
           +     L+ G EY   V  V ++    P+                PP     T +G D +
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTII-------PAVPPPTDLRFTNIGPDTM 111

Query: 207 NLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYA 266
            ++W  P       +  + +    V ++          + + + + NL+ G +Y   V +
Sbjct: 112 RVTWAPP---PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSS 168

Query: 267 QNEAGLSLPSSAS 279
             E   S P    
Sbjct: 169 VYEQHESTPLRGR 181

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 81.4 bits (201), Expect = 7e-17
 Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 21/166 (12%)

Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEN 465
             TGY   +IT    N    +     V   +             + +P       V    
Sbjct: 30  DITGY---RITTTPTNGQQGNSLEEVVHADQSSCTFD-------NLSPGLEYNVSVYTVK 79

Query: 466 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
           D    S  +   I     PP      +IG D++ + W  P      ++TN++V       
Sbjct: 80  DDKE-SVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKN 135

Query: 526 SSWIRVGN--TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
              +   +       + +T L PG +Y   V +      S P    
Sbjct: 136 EEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 181

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 78.7 bits (194), Expect = 7e-16
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 23/166 (13%)

Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEN 465
             T +    +  Y   +  E      +  S+   +LT       +  P       V +  
Sbjct: 122 DLTNF----LVRYSPVKNEEDVAELSISPSDNAVVLT-------NLLPGTEYVVSVSSVY 170

Query: 466 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
           +   +S  ++ +     D P      DI  +S  + W AP     + IT Y +       
Sbjct: 171 EQH-ESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHF 225

Query: 526 SSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           S   R         ++ +T L+PG +Y   + A N    S      
Sbjct: 226 SGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQ 271

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 482 PDPPQFPTVEDIGH-DSLALVWRAPIWDGGSNITNYIVEKRE---HPMSSWIRVGNTRFT 537
             PP    +E       L + W         +IT Y +          +S   V +   +
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           +     LSPG +Y   VY       S P + +
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISDT 90

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  115 bits (291), Expect = 4e-31
 Identities = 27/105 (25%), Positives = 42/105 (40%)

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
             S     SPP +  V  V    V + W  P   G + + GY ++    G++ W   N  
Sbjct: 1   GSSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKD 60

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
           +   ++  I  L    +   RV A N AG S P   S  + +K+ 
Sbjct: 61  LIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKES 105

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  115 bits (290), Expect = 7e-31
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRF 536
           S    PP   TV+ +   ++ + WR P   G + +  Y++E        WI         
Sbjct: 5   SSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDK 64

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           T   ITGL    +   RV A N  G S+P   S  I  
Sbjct: 65  TKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILV 102

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  106 bits (267), Expect = 8e-28
 Identities = 30/107 (28%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTT 147
             PP   L V  +T  T T+ W PP + G   +  YV+E        WI         T 
Sbjct: 8   TSPP-TLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66

Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
           F + GL    +    V AVN  G   P     PI  K         G
Sbjct: 67  FTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGP---SSG 110

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  118 bits (296), Expect = 8e-31
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 17/195 (8%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS--WLKGSREITPSARHHIFAEGDTYT 349
            P I+                QC +T      +   W K   E+T + ++          
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNME 57

Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 409
             IN     D+ EY C   +        A + +  AP      R   +   ++G++ ++ 
Sbjct: 58  YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKR---SENKNEGQDAMMY 113

Query: 410 IPFTGYPKPKITWYRDNEVI-----ESGGHFHVETSERHAILTIRD-ASNVDTAPYRVVA 463
               GYP P+  W +    +      S G F +   E +  L I +     D   Y   A
Sbjct: 114 CKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNA 173

Query: 464 ENDLGMDSAIVKIQI 478
            N +G  S    +++
Sbjct: 174 TNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 78.0 bits (192), Expect = 7e-17
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 11/112 (9%)

Query: 277 SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP- 335
            A+ ++++K       P+I    R+ N  +  +A   C   G P P   W K    +   
Sbjct: 82  KANATIEVKAA-----PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE 136

Query: 336 ----SARHHIFAEGDTYTLIINSVYGV-DADEYVCRAVNKGGVKSTKAELII 382
               S R  I  + +   L I ++    D  EY C A N  G  S    L +
Sbjct: 137 ISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  117 bits (295), Expect = 1e-30
 Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 21/200 (10%)

Query: 296 IVPLRNANAIQNHNAQFQ-CTITGCPKPTISWLKGSREITPSARHHIFAEGDT--YTLII 352
                    ++    +F            ++++   +EI    ++ +  + +T    + +
Sbjct: 6   TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDK---------- 402
             +   D   Y  +  +      +   L+     K      F+   +  K          
Sbjct: 66  EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS 125

Query: 403 -----GENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDT 456
                  NV++K       K   I WY+D   I        +       L I + S  D 
Sbjct: 126 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI--CTLLITEFSKKDA 183

Query: 457 APYRVVAENDLGMDSAIVKI 476
             Y V+ ++D G D + +K+
Sbjct: 184 GIYEVILKDDRGKDKSRLKL 203

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 83.4 bits (206), Expect = 1e-18
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 15/147 (10%)

Query: 248 QINIPNLIEGRQYEFRVYAQNEAG-----------LSLPSSASNSVQIKDPMAAKAPEII 296
           ++ +  L +  +  +    Q+              +          Q ++ +  + P  +
Sbjct: 62  EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121

Query: 297 VPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSV 355
             L +       N   +C +    K T I W K  REI+   +H    +    TL+I   
Sbjct: 122 EYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEF 178

Query: 356 YGVDADEYVCRAVNKGGVKSTKAELII 382
              DA  Y     +  G   ++ +L+ 
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 10/109 (9%), Positives = 28/109 (25%), Gaps = 4/109 (3%)

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
             F            +KG+              K+ +  + + I  G  + +       I
Sbjct: 3   DPFTKSEL--AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60

Query: 446 --LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
             + +    + D   Y    ++    + + V +         +    + 
Sbjct: 61  IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 109

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 2  PNALYIPEGDNTKVKI-FYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYII--IFIKEI 58
            A+ I E    +  +         +V+   N + +    ++K  +  +  I  +F++++
Sbjct: 9  ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 68

Query: 59 RKEDAGDYTVNLSNSSGSVSGTFT 82
          + ED G YT  L +   +   T  
Sbjct: 69 QDEDEGTYTFQLQDGKATNHSTVV 92

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 21  GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
             +   +   K+ R +  D++  F   D    + I E  K+DAG Y V L +  G     
Sbjct: 143 IKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSR 200

Query: 81  FTI 83
             +
Sbjct: 201 LKL 203

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score =  114 bits (288), Expect = 2e-30
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 468 GMDSAIVKIQISDRPDPPQFP--TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
           G       +++   P  P+ P  T+  +   ++ L W  P  DG S +  YI+E  E+  
Sbjct: 4   GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNA 62

Query: 526 SSWIRVGNT--RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
              + + +   + T++ + GL P   Y+FR+ A N  G+   S  ++ ++ 
Sbjct: 63  PWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL 113

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score =  110 bits (278), Expect = 4e-29
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 73  SSGSVSGTFTINITGLPGPPIGP-LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI 131
           SSGS   +  + +  LP  P  P   +S + +    L W  P +DG   +  Y++E  + 
Sbjct: 2   SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSEN 60

Query: 132 SMPHWICISTT-CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKP 190
           + P  + +++     T+  V+GL   + Y F + AVN+ G G   +    +    P   P
Sbjct: 61  NAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL--PESGP 118

Query: 191 S 191
           S
Sbjct: 119 S 119

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 98.2 bits (245), Expect = 1e-24
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 188 DKPSPPGIPVVT--QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
             P  P  PV T   V    +NL+W KP  DG S +  Y ++  E  +     +      
Sbjct: 16  QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPK 74

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
            + + +  L+  R Y+FR+ A N+ G    S  +  V + + 
Sbjct: 75  ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score =  116 bits (292), Expect = 4e-30
 Identities = 32/203 (15%), Positives = 72/203 (35%), Gaps = 20/203 (9%)

Query: 90  GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH-WICISTTCHDTTF 148
           GP    +  +    ++  + WN P+      ++ Y++  R  +    W   +   H  ++
Sbjct: 2   GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGI------------NPIKAKSPYDKPSPPGIP 196
            ++GL  G  Y   ++++ + G                    N +  ++    P      
Sbjct: 59  TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118

Query: 197 VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIE 256
            VT++      +SW          + G+ ++          +        + +NIP+L+ 
Sbjct: 119 SVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLP 174

Query: 257 GRQYEFRVYAQNEAGLSLPSSAS 279
           GR+Y   VY  +E G      ++
Sbjct: 175 GRKYIVNVYQISEDGEQSLILST 197

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 66.6 bits (162), Expect = 8e-13
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV----GNTRFTTM 539
              F T      +S  + W AP     S+I+ YI+  R        +     G+    + 
Sbjct: 4   VEVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHL--NSY 58

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            I GL PG  YE ++ +   YG  + +      T+
Sbjct: 59  TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTS 93

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 65.5 bits (159), Expect = 2e-12
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGN--TRFT 537
             P      +V +I   S  + W +        ++ + VE          +  +  +  T
Sbjct: 110 FSPLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTAT 165

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           ++ I  L PG +Y   VY  +  G      ++   T
Sbjct: 166 SVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           S+   S T T   T           V+EIT  +  + W          V+ + VE     
Sbjct: 95  STPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSE 150

Query: 133 MPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
                  +      T+  +  L  G++Y+ +V  ++E+G    +   
Sbjct: 151 EGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILST 197

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 3/93 (3%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
                    T    +   + W+ P     S I  Y +      S    +        +  
Sbjct: 2   GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 282
            I  L  G  YE ++ +  + G    +    + 
Sbjct: 59  TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTT 91

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  124 bits (312), Expect = 4e-30
 Identities = 77/505 (15%), Positives = 134/505 (26%), Gaps = 100/505 (19%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
           P       G+N  +    A + P + S   NG   QS               FI  I   
Sbjct: 210 PLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQEL-----------FIPNITVN 258

Query: 62  DAGDYTVNLSNSSG--SVSGTFTINITGLPGPPIG------PLDVSEITKHTCTLHWNPP 113
           ++G YT    NS    + +   TI +   P  P        P++  +    TC       
Sbjct: 259 NSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNT 318

Query: 114 KYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP 173
                     Y+    + S+P    +  +  + T  +  +T      +      +N +  
Sbjct: 319 ---------TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGI--QNELSV 367

Query: 174 PL-EGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNL------------SW---DKPLDDG 217
              + +       P D    P         G  ++L            SW          
Sbjct: 368 DHSDPVILNVLYGPDDPTISPSYTYYRP--GVNLSLSCHAASNPPAQYSWLIDGNIQQHT 425

Query: 218 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
                                          + I N+ E     +   A N A      +
Sbjct: 426 QE-----------------------------LFISNITEKNSGLYTCQANNSAS-GHSRT 455

Query: 278 ASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA 337
              ++ +    A      I    +          F C         + W+ G + +  S 
Sbjct: 456 TVKTITV---SAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNG-QSLPVSP 511

Query: 338 RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRD 396
           R  +       TL + +V   DA  YVC   N     +S    L ++  P    P     
Sbjct: 512 RLQLSNGN--RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD--TPIISPP 567

Query: 397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDT 456
            + +  G N+ +       P P+ +W  +    +               L I   +  + 
Sbjct: 568 DSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQV-----------LFIAKITPNNN 616

Query: 457 APYRVVAENDLGMD--SAIVKIQIS 479
             Y     N       S +  I +S
Sbjct: 617 GTYACFVSNLATGRNNSIVKSITVS 641

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  113 bits (285), Expect = 1e-26
 Identities = 69/472 (14%), Positives = 117/472 (24%), Gaps = 106/472 (22%)

Query: 54  FIKEIRKEDAGDYTVNLSNSSG---SVSGTFTINITGLPGPPIGPLDVSEITKH-----T 105
            I+ I + D G YT+++  S       +G F +    LP P I   +   +        T
Sbjct: 74  LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPE-LPKPSISSNNSKPVEDKDAVAFT 132

Query: 106 CTLHWNPPKY-----DGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYL 160
           C        Y     +  L V+     R  +S            + T  +  +T      
Sbjct: 133 CEPETQDATYLWWVNNQSLPVSP----RLQLSNG----------NRTLTLFNVTRNDTAS 178

Query: 161 FHVMAVNENGM------------GPPLEGINPIKAKSPYDKP-----SPPGIPVVTQVGG 203
           +     N                GP    I+P+       +           P       
Sbjct: 179 YKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQ---- 234

Query: 204 DFVNLSW---DKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQY 260
                SW                                         + IPN+      
Sbjct: 235 ----YSWFVNGTFQQSTQE-----------------------------LFIPNITVNNSG 261

Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 320
            +   A N        + +    I        P  I    +            C      
Sbjct: 262 SYTCQAHNSDT---GLNRTTVTTITVYAEPPKP-FITSNNSNPVEDEDAVALTCEPEIQN 317

Query: 321 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAE 379
             T  W   ++ +  S R  +  +  T  L + SV   D   Y C   N+     S    
Sbjct: 318 -TTYLWWVNNQSLPVSPRLQLSNDNRT--LTLLSVTRNDVGPYECGIQNELSVDHSDPVI 374

Query: 380 LIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET 439
           L ++  P          T Y+  G N+ +       P  + +W  D  + +         
Sbjct: 375 LNVLYGPDD-PTISPSYT-YYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE----- 427

Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
                 L I + +  ++  Y   A N     S      I+   + P+     
Sbjct: 428 ------LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS 473

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  111 bits (278), Expect = 7e-26
 Identities = 47/293 (16%), Positives = 88/293 (30%), Gaps = 23/293 (7%)

Query: 201 VGGDFVNLSWDK-PLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQ 259
           +       SW K    DG  +I GY I   +            I   + + I N+I+   
Sbjct: 24  LPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDT 83

Query: 260 YEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC 319
             + ++      ++  ++    V  + P        I    +          F C     
Sbjct: 84  GFYTLHVIKSDLVNEEATGQFRVYPELP-----KPSISSNNSKPVEDKDAVAFTCEPETQ 138

Query: 320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKA 378
              T  W   ++ +  S R  +       TL + +V   D   Y C   N     +S   
Sbjct: 139 D-ATYLWWVNNQSLPVSPRLQLSNGN--RTLTLFNVTRNDTASYKCETQNPVSARRSDSV 195

Query: 379 ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE 438
            L ++  P    P        +  GEN+ +       P  + +W+ +    +S       
Sbjct: 196 ILNVLYGPDA--PTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE---- 249

Query: 439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
                  L I + +  ++  Y   A N     +      I+   +PP+     
Sbjct: 250 -------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS 295

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  105 bits (264), Expect = 5e-24
 Identities = 33/225 (14%), Positives = 64/225 (28%), Gaps = 22/225 (9%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
            QNE         S+ V +   +     +  +           N    C     P    S
Sbjct: 361 IQNELS----VDHSDPVILN--VLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYS 414

Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
           WL        +             L I+++   ++  Y C+A N     S      I  +
Sbjct: 415 WLIDGNIQQHTQ-----------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS 463

Query: 386 PKFNVPPRFRDTAY-FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
            +   P    + +   +  + V               W+ + + +       +    R  
Sbjct: 464 AELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSNGNR-- 520

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFP 488
            LT+ + +  D   Y    +N +  + S  V + +   PD P   
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIIS 565

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  102 bits (256), Expect = 4e-23
 Identities = 45/307 (14%), Positives = 85/307 (27%), Gaps = 36/307 (11%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
            QN        S S  + +            +   N +     N    C     P    S
Sbjct: 183 TQNPVSARR--SDSVILNVLYG----PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYS 236

Query: 326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
           W         +             L I ++   ++  Y C+A N     +      I   
Sbjct: 237 WFVNGTFQQSTQ-----------ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVY 285

Query: 386 PKFNVPP-RFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
            +   P     ++   +  + V +             W+ +N+ +       +    R  
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDNR-- 342

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWR 503
            LT+   +  D  PY    +N+L +D S  V + +   PD P            + L   
Sbjct: 343 TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLS 402

Query: 504 APIWDGGSNITNYIVEKREHPMSSWIRVGNTRFT--TMAITGLSPGHQYEFRVYAENVYG 561
                  +    Y          SW+  GN +     + I+ ++  +   +   A N   
Sbjct: 403 CHA--ASNPPAQY----------SWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSAS 450

Query: 562 RSDPSTT 568
               +T 
Sbjct: 451 GHSRTTV 457

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 88.1 bits (218), Expect = 2e-18
 Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 30/208 (14%)

Query: 303 NAIQNHNAQFQCTITGCPKPTISWLKGSREIT-------------------PSARHHIFA 343
           N  +                  SW KG R                       S R  I+ 
Sbjct: 10  NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP 69

Query: 344 EGDTYTLIINSVYGVDADEYVCRAVNKGGV--KSTKAELIIMTAPKFNVPPRFRDTAYFD 401
                +L+I ++   D   Y    +    V  ++T    +    PK ++     ++   +
Sbjct: 70  NA---SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS--NNSKPVE 124

Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
             + V               W+ +N+ +       +    R   LT+ + +  DTA Y+ 
Sbjct: 125 DKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKC 181

Query: 462 VAENDLGMD-SAIVKIQISDRPDPPQFP 488
             +N +    S  V + +   PD P   
Sbjct: 182 ETQNPVSARRSDSVILNVLYGPDAPTIS 209

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
             N+  + + D           Q        NG+ +    R +     +  +  +  + +
Sbjct: 473 SNNSKPVEDKDAVAFTCE-PEAQNTTYLWWVNGQSLPVSPRLQL-SNGNRTLT-LFNVTR 529

Query: 61  EDAGDYTVNLSNSSGSV-SGTFTINITGLP-GPPIGPLDVSEITKHTCTLH 109
            DA  Y   + NS  +  S   T+++   P  P I P D S ++     L 
Sbjct: 530 NDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLS 580

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 41.1 bits (96), Expect = 9e-04
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 402 KGENVVVKIPFTGYPKPKITWYRD----------------NEVIESGGHFHVETSERHAI 445
           +G+ V++ +          +WY+                  +      +   E    +A 
Sbjct: 13  EGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNAS 72

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
           L I++    DT  Y +       + +     Q    P+ P+     
Sbjct: 73  LLIQNIIQNDTGFYTLHVIKSDLV-NEEATGQFRVYPELPKPSISS 117

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score =  116 bits (291), Expect = 4e-30
 Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 18/197 (9%)

Query: 83  INITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT 142
           IN       P   L+VS+ T+ T +L W  P          Y +     S      +   
Sbjct: 1   INAGTDLDNPKD-LEVSDPTETTLSLRWRRPVAK----FDRYRLTYVSPSGKKNE-MEIP 54

Query: 143 CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVG 202
              T+FI++GL  G EY   ++A        P                  P     + + 
Sbjct: 55  VDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTI-------KGSTVVGSPKGISFSDIT 107

Query: 203 GDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEF 262
            +   +SW  P     SR+  Y +    +       V V   + ++  +  L+ G  Y  
Sbjct: 108 ENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDG-SKTRTKLVKLVPGVDYNV 162

Query: 263 RVYAQNEAGLSLPSSAS 279
            + +      S P S  
Sbjct: 163 NIISVKGFEESEPISGI 179

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 76.7 bits (189), Expect = 2e-16
 Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 26/170 (15%)

Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEN 465
            F  Y   ++T+   +          +       IL                   +VAE 
Sbjct: 33  KFDRY---RLTYVSPSGKKNE---MEIPVDSTSFILR-------GLDAGTEYTISLVAEK 79

Query: 466 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 525
                S    I+ S     P+  +  DI  +S  + W  P     S + +Y V       
Sbjct: 80  GRH-KSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITG 134

Query: 526 SSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            +   V  +   T   +  L PG  Y   + +   +  S+P +    + T
Sbjct: 135 GTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGI--LKT 182

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 73.6 bits (181), Expect = 3e-15
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 476 IQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTR 535
           I      D P+   V D    +L+L WR P+    +    Y +                 
Sbjct: 1   INAGTDLDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIPVD 56

Query: 536 FTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
            T+  + GL  G +Y   + AE    +S P+T  
Sbjct: 57  STSFILRGLDAGTEYTISLVAEKGRHKSKPTTIK 90

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 65  DYTVNL-SNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
           +YT++L +      S   TI  + + G P   +  S+IT+++ T+ W PP+      V  
Sbjct: 70  EYTISLVAEKGRHKSKPTTIKGSTVVGSP-KGISFSDITENSATVSWTPPRSR----VDS 124

Query: 124 YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
           Y V    I+      ++     T   +  L  G +Y  ++++V       P+ GI
Sbjct: 125 YRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGI 179

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  114 bits (288), Expect = 7e-30
 Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 19/193 (9%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY--T 349
             +++         Q    +  C++ G  +P I W+K    +    + +I      +   
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 350 LIINSVYGVDADEYVCRAVNKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
           L + SV   DA  Y C+  + G  + S    L +   P F V P  +D A         +
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEP--KDLAV-PPNAPFQL 118

Query: 409 KIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDL 467
                G P+P  I W+R    I          +   ++L +   +   +  +   A N  
Sbjct: 119 SCEAVGPPEPVTIVWWRGTTKIG-------GPAPSPSVLNVTGVT--QSTMFSCEAHNLK 169

Query: 468 GMD---SAIVKIQ 477
           G+    +A V +Q
Sbjct: 170 GLASSRTATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF--IKEIR 59
          P  L + +G   K+     G +  ++   K+G VVQ+ D+    V + + I F  +K + 
Sbjct: 9  PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 68

Query: 60 KEDAGDYTVNLSNSSGS-VSGTFTINITGLP 89
          + DAG Y   + +   + +S    + + G+P
Sbjct: 69 RSDAGRYWCQVEDGGETEISQPVWLTVEGVP 99

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score =  112 bits (283), Expect = 9e-30
 Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI 529
            S      + D P+PP    + D    S+ L W     D  S IT +I+E  +      +
Sbjct: 5   SSGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGD-DNNSPITKFIIEYEDAMHKPGL 63

Query: 530 RVGNTRF---TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
               T      T A   LSP   Y FRV A N  G+S PS  S+   T
Sbjct: 64  WHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT 111

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score =  103 bits (258), Expect = 2e-26
 Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 4/127 (3%)

Query: 74  SGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM 133
           S   SG     +  +P PP   L++++    +  L W P   D    +T +++E  D   
Sbjct: 2   SSGSSGPTPAPVYDVPNPP-FDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMH 59

Query: 134 P--HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
               W   +      T     L+    Y F VMAVN  G   P E       K+     +
Sbjct: 60  KPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKN 119

Query: 192 PPGIPVV 198
           P   P  
Sbjct: 120 PTSGPSS 126

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 98.2 bits (245), Expect = 1e-24
 Identities = 35/109 (32%), Positives = 43/109 (39%), Gaps = 2/109 (1%)

Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
            YD P+PP    +T      V LSW  P DD  S I  + I+  +         +    +
Sbjct: 13  VYDVPNPPFDLELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVS 71

Query: 246 PSQIN-IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAP 293
            +Q     NL     Y FRV A N  G SLPS AS     K     K P
Sbjct: 72  GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNP 120

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  120 bits (303), Expect = 9e-30
 Identities = 31/229 (13%), Positives = 56/229 (24%), Gaps = 24/229 (10%)

Query: 261 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-GC 319
           + R  A+NE G       +    I              L             +C      
Sbjct: 205 DIRCCARNELG----RECTRLFTIDLN-----QTPQTTLPQLFLKVGEPLWIRCKAVHVN 255

Query: 320 PKPTISWLKGSREITPSARHHIFAEGDTY------TLIINSVYGVDADEYVCRAVNKGGV 373
               ++W   ++ +       +                ++SV   D   Y C +      
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS- 314

Query: 374 KSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG 433
               A + I+     N      D    D+ E     + F  YP+ + TW    +      
Sbjct: 315 --QSALVTIVEKGFINATNSSEDYEI-DQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ 371

Query: 434 HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
                       ++           Y   AEND    + +  + I    
Sbjct: 372 KGLDNGYS----ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  112 bits (280), Expect = 1e-26
 Identities = 35/309 (11%), Positives = 94/309 (30%), Gaps = 21/309 (6%)

Query: 266 AQNEAGLSLPSS----ASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 321
             N++ +   SS    + +   +   +  ++   +          + +   Q  +     
Sbjct: 18  KNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGN 77

Query: 322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 381
            +  W+     +       +   G   +++I  +    A EY+    ++    +    + 
Sbjct: 78  ISCLWVFKHSSLNCQPHFDLQNRGVV-SMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136

Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
           I     + +   +             +       P+P + W   +   ES         +
Sbjct: 137 IRNTLLYTLRRPYFRKM----ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVK 192

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFPTVEDIGHDSLAL 500
           +     + +    D    R  A N+LG + + +  I ++  P          +G + L +
Sbjct: 193 KE-EKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVG-EPLWI 247

Query: 501 VWRAPIWDGGSNIT----NYIVEKREHPMSSWIRVGNT--RFTTMAITGLSPGHQYEFRV 554
             +A   + G  +T    N  +E+  +   S      T  R     ++ ++      +  
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307

Query: 555 YAENVYGRS 563
            +     +S
Sbjct: 308 SSSKHPSQS 316

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  102 bits (256), Expect = 1e-23
 Identities = 41/400 (10%), Positives = 105/400 (26%), Gaps = 49/400 (12%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
             A+ +    +  +++       +          +     F        + + I ++ + 
Sbjct: 55  AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV-VSMVILKMTET 113

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHT---CTLHWNP-PKYDG 117
            AG+Y + + + + + +  FT++I       +      ++       C     P P    
Sbjct: 114 QAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIV-- 171

Query: 118 GLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP---P 174
                 +V+             +    +   + +    G +      A NE G       
Sbjct: 172 -----EWVLCDSQGESCKEESPAVVKKEEKVLHE--LFGTDI--RCCARNELGRECTRLF 222

Query: 175 LEGINPIKAKSPYDKPSPPGIPVV---TQVGGDF-VNLSWDKPLDDGGSRIQGYWIDKHE 230
              +N     +        G P+      V  +    L+W+    +  +  +G + +   
Sbjct: 223 TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL---ENKALEEGNYFEMST 279

Query: 231 VGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
             ++                + ++       +   +            S  V I +    
Sbjct: 280 YSTNRTMIRI------LFAFVSSVARNDTGYYTCSSSKHPS------QSALVTIVEK--- 324

Query: 291 KAPEIIVPLRNAN--AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
               I     + +    Q     F       P+   +W    +      +       + Y
Sbjct: 325 --GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGY 378

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 388
           ++     +     EY+  A N     +    L I +  K 
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH 418

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
                 I + +     + +     +  + T + +    + +     LD+   I      K
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG----LDNGYSISKFCNHK 387

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINITGLP 89
              G+Y  +  N     +  FT+NI    
Sbjct: 388 HQPGEYIFHAENDDAQFTKMFTLNIRSGT 416

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score =  111 bits (280), Expect = 1e-29
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFT 537
           S  P  P  P +   G   L+L W  P         +YI+E  E       +   +    
Sbjct: 5   SSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL 64

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
              +  L    +Y+F+V A N  G+S+PS   +  T 
Sbjct: 65  AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC 101

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score =  110 bits (276), Expect = 6e-29
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
             P  P     +++      +L W+ P      +   Y++E  + +  +         D 
Sbjct: 6   SGPSMP-ASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL 64

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
            + V+ L    +Y F V+A N  G   P E +         D     G
Sbjct: 65  AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCP---DSGPSSG 109

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score =  108 bits (272), Expect = 2e-28
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 1/110 (0%)

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
             S    PS P  PV+T+ G  +++L W KP          Y ++  E  S    +    
Sbjct: 1   GSSGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD 60

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKA 292
               +   + NL    +Y+F+V A N  G S PS         D   +  
Sbjct: 61  GEDLA-YTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSSG 109

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  115 bits (290), Expect = 2e-29
 Identities = 47/225 (20%), Positives = 71/225 (31%), Gaps = 25/225 (11%)

Query: 290 AKAPEIIVPLRNANAIQ----NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFA-E 344
             AP    P R    +      +  +F+C   G P P+ISWLK  RE     R       
Sbjct: 9   TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 68

Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD-----TAY 399
              ++L++ SV   D   Y C   NK G       L ++       P          TA 
Sbjct: 69  HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH-RPILQAGLPANQTAV 127

Query: 400 FDKGENVVVKIPFTGYPKPKITWYRDNEV------------IESGGHFHVETSERHAILT 447
              G +V          +P I W +  EV            +     +  E+ E    L 
Sbjct: 128 L--GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185

Query: 448 IRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
           + + S  D   Y   A N +G+      + +       +     D
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEAD 230

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 79.2 bits (195), Expect = 7e-17
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 15/139 (10%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
            +N+ G       + ++ + +    +         N  A+   + +F C +    +P I 
Sbjct: 91  VENKFGSI---RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ 147

Query: 326 WLK------------GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV 373
           WLK            G+  +T        +      L + +V   D  EY+CRA N  GV
Sbjct: 148 WLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV 207

Query: 374 KSTKAELIIMTAPKFNVPP 392
                 L +          
Sbjct: 208 AEKAFWLSVHGPRAAEEEL 226

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFK-FTVLDDYIIIFIKEIRK 60
              L +P  +  + +   AG+    +S  KNGR  + + R     +      + ++ +  
Sbjct: 22  KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP 81

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINITG-LPGPPI 93
            D G+YT  + N  GS+  T+T+++    P  PI
Sbjct: 82  SDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 115

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 31  KNGRVVQSDDRFKFTVLDDYIIIF--------IKEIRKEDAGDYTVNLSNSSGSVSGTFT 82
            NG  V  D     TVL  +I           +  + + D G+Y    +N  G     F 
Sbjct: 154 VNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFW 213

Query: 83  INITGLPGPPIGPLDVSE---ITKHTC 106
           +++ G        ++  E   +  H  
Sbjct: 214 LSVHGPRAAEEELVEADEAGSVHHHHH 240

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  114 bits (288), Expect = 2e-29
 Identities = 50/209 (23%), Positives = 73/209 (34%), Gaps = 17/209 (8%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT-----PSARHHIFAEGD 346
            P I+    +    +   A   C   G P PTI W KG   +      P +   +   G 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 347 TYTLIINSVYGVDADE--YVCRAVNKGG-VKSTKAELIIMT-APKFNVPPRFRDTAYFDK 402
            + L I        DE  YVC A N  G   S  A L +      F   P          
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPS---DVMVAV 125

Query: 403 GENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
           GE  V++  P  G+P+P I+W +D   ++        T      L I      D   Y  
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI--TIRGGK-LMITYTRKSDAGKYVC 182

Query: 462 VAENDLGMD-SAIVKIQISDRPDPPQFPT 489
           V  N +G   S + ++ + +RP   +   
Sbjct: 183 VGTNMVGERESEVAELTVLERPSFVKAAA 211

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 91.0 bits (226), Expect = 4e-21
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (8%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTI 324
           A+N  G ++  S   S+++    A    +      +        A  +C    G P+PTI
Sbjct: 91  ARNYLGEAV--SHDASLEV----AILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTI 144

Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIM 383
           SW K    +           G    L+I      DA +YVC   N  G  +S  AEL ++
Sbjct: 145 SWKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201

Query: 384 TAPKFNVPP 392
             P F    
Sbjct: 202 ERPSFVKAA 210

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score =  114 bits (287), Expect = 2e-29
 Identities = 40/217 (18%), Positives = 68/217 (31%), Gaps = 19/217 (8%)

Query: 64  GDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
           G    +  +SSG V          +P P    L   +IT  +  L W P        +  
Sbjct: 2   GSSHHHHHHSSGLVPRGSH---MEVPQPTD--LSFVDITDSSIGLRWTPL---NSSTIIG 53

Query: 124 YVVERRDISMPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
           Y +          I           + V GL  G +Y   V  V   G   P      + 
Sbjct: 54  YRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTT----LT 109

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
            ++      PP     T +G D + ++W  P       +  + +    V ++        
Sbjct: 110 QQTA---VPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSI 163

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
             + + + + NL+ G +Y   V +  E   S P    
Sbjct: 164 SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 200

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 78.3 bits (193), Expect = 9e-17
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE 519
            V    + G +S    +       PP      +IG D++ + W  P      ++TN++V 
Sbjct: 93  SVYTVKNGG-ESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVR 148

Query: 520 KREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
                    +     +     + +T L PG +Y   V +      S P    
Sbjct: 149 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 200

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 471 SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR 530
           S +V          P   +  DI   S+ L W        S I  Y +          I 
Sbjct: 12  SGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIF 68

Query: 531 VG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
               ++      +TGL PG  Y+  VY     G S P+T +
Sbjct: 69  EDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLT 109

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  114 bits (288), Expect = 2e-29
 Identities = 43/225 (19%), Positives = 73/225 (32%), Gaps = 32/225 (14%)

Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
            S+ +       +  +  +I V   +   +     +  C  TG P     W K ++EI  
Sbjct: 2   GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP- 60

Query: 336 SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKF------ 388
                    G+T  LI N+V+  DA  YVCR  N      S  ++L +   P+       
Sbjct: 61  --------NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112

Query: 389 ---NVPPRFRDT---AYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
                  +            G  +V++    G P P   W+++   +         T E 
Sbjct: 113 GVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THET 163

Query: 443 HAILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQ 486
             +  +          Y     ND    DS  V+I I +  +   
Sbjct: 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGH 208

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 81.5 bits (201), Expect = 9e-18
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 18/136 (13%)

Query: 266 AQNEAGLSLPSSASNSVQ--------IKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT 317
             N         +   V           D ++    +I V   +   +       QC   
Sbjct: 84  VNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAV 143

Query: 318 GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKST 376
           G P P   W K    +T   +            ++  V       Y C   N      S 
Sbjct: 144 GSPIPHYQWFKNELPLTHETKK---------LYMVPYVDLEHQGTYWCHVYNDRDSQDSK 194

Query: 377 KAELIIMTAPKFNVPP 392
           K E+II        P 
Sbjct: 195 KVEIIIDELNNLGHPD 210

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  117 bits (295), Expect = 6e-29
 Identities = 43/218 (19%), Positives = 71/218 (32%), Gaps = 15/218 (6%)

Query: 65  DYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHY 124
           DY +++           T        PP   L  + I   T  + W PP     + +T++
Sbjct: 162 DYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNF 218

Query: 125 VVE-RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA 183
           +V      +      +S +  D   ++  L  G EY+  V +V E     PL G      
Sbjct: 219 LVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG------ 272

Query: 184 KSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI 243
                    P     + +  +   + W  P     + I GY I  H        R +   
Sbjct: 273 -RQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVP 327

Query: 244 CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
            + + I + NL  G +Y   + A N    S       S
Sbjct: 328 HSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 365

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  113 bits (284), Expect = 2e-27
 Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 19/215 (8%)

Query: 66  YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYV 125
           YTV     S  +S T       +P      L   +IT  +  L W P   +    +  Y 
Sbjct: 77  YTVKDDKESVPISDTII---PEVPQLT--DLSFVDITDSSIGLRWTPL--NSS-TIIGYR 128

Query: 126 VERRDISMPHWI-CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
           +          I           + V GL  G +Y   V+ +   G   P          
Sbjct: 129 ITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL------- 181

Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
           +      PP     T +G D + ++W  P       +  + +    V ++          
Sbjct: 182 TQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISP 238

Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           + + + + NL+ G +Y   V +  E   S P    
Sbjct: 239 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 273

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  105 bits (264), Expect = 8e-25
 Identities = 64/413 (15%), Positives = 115/413 (27%), Gaps = 85/413 (20%)

Query: 190 PSPPGIPVVTQVGG-DFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS- 247
            SPP    +        + +SW++        I GY I            +   + A   
Sbjct: 3   LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 59

Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
                NL  G +Y   VY   +   S             P++      +  L + + +  
Sbjct: 60  SCTFDNLSPGLEYNVSVYTVKDDKES------------VPISDTIIPEVPQLTDLSFVDI 107

Query: 308 HNAQFQCTITGCPKPTISWLKGSREI------------TPSARHHIFAEGDTYTLII--- 352
            ++             + W   +                       F +       +   
Sbjct: 108 TDSSI----------GLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGL 157

Query: 353 --NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV-- 408
                Y +     V   +  GG +S    L   TA     PP   D  + + G + +   
Sbjct: 158 EPGIDYDI----SV-ITLINGG-ESAPTTLTQQTAVP---PPT--DLRFTNIGPDTMRVT 206

Query: 409 -----KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY---- 459
                 I  T +    +  Y   +  E      +  S+   +LT       +  P     
Sbjct: 207 WAPPPSIDLTNF----LVRYSPVKNEEDVAELSISPSDNAVVLT-------NLLPGTEYV 255

Query: 460 -RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
             V +  +   +S  ++ +     D P      DI  +S  + W AP     + IT Y +
Sbjct: 256 VSVSSVYEQH-ESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGYRI 310

Query: 519 EKREHPMSSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
                  S   R         ++ +T L+PG +Y   + A N    S      
Sbjct: 311 RHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQ 363

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  103 bits (258), Expect = 5e-24
 Identities = 30/198 (15%), Positives = 53/198 (26%), Gaps = 16/198 (8%)

Query: 88  LPGPPIGPLDVSEITKHTC-TLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD- 145
           +P  P   L +         T+ W          +T Y +     +      +    H  
Sbjct: 1   MPLSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHAD 57

Query: 146 -TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGD 204
            ++     L+ G EY   V  V ++    P+             +           +   
Sbjct: 58  QSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDT-------IIPEVPQLTDLSFVDITDS 110

Query: 205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
            + L W        S I GY I     G       +    +     +  L  G  Y+  V
Sbjct: 111 SIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISV 167

Query: 265 YAQNEAGLSLPSSASNSV 282
                 G S P++ +   
Sbjct: 168 ITLINGGESAPTTLTQQT 185

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score =  109 bits (274), Expect = 6e-29
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDT 347
           + +AP+I   +++    Q  +A F+  + G P P   W K   +I  S R +  + E + 
Sbjct: 2   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
             L+I  V G D+   + +A+N  G  S+ A L++
Sbjct: 62  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 76.5 bits (189), Expect = 3e-17
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
           M APK     + +      +G +   ++   G P P+  WY++   IE     +    E 
Sbjct: 3   MEAPKIFERIQSQTVG---QGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED 59

Query: 443 H-AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
           +   L IRD +  D+A   V A N  G  S+   + +  +
Sbjct: 60  NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 7  IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIII-FIKEIRKEDAGD 65
          + +G +   ++   G    E    KNG  ++  DR  +   +D +    I+++  ED+  
Sbjct: 17 VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSAS 76

Query: 66 YTVNLSNSSGSVSGTFTINITG 87
            V   N +G  S    + +  
Sbjct: 77 IMVKAINIAGETSSHAFLLVQA 98

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score =  109 bits (274), Expect = 1e-28
 Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 479 SDRPDPPQFPTVED-IGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFT 537
           S  P P   P ++       + L W  P+ DGGS I+ Y VE           V      
Sbjct: 6   SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEV 65

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
              ++ L PG  Y FR+ A N  G    S   D+ T 
Sbjct: 66  ECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score =  105 bits (263), Expect = 3e-27
 Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
           +G PGP + P            L W PP  DGG  ++ Y VE   I       +     +
Sbjct: 6   SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV-YQGSE 64

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
               V  L  G+ Y F + A N+ G GP  E  +   A  P   PS 
Sbjct: 65  VECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA--PGSGPSS 109

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 92.4 bits (230), Expect = 9e-23
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 190 PSPPGIP-VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           P P   P +  +     + L W  PL DGGS I  Y ++   +  D  + V     +  +
Sbjct: 9   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVE 66

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 282
             + +L+ G+ Y FR+ A N+ G    S   +  
Sbjct: 67  CTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDIT 100

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  116 bits (291), Expect = 1e-28
 Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 15/197 (7%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
           P + V + NA+     +   +C + G       W+    E + +              + 
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLG-LTLA 217

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF 412
           N    ++     C A N  G      ++ +         P         +  +  +    
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNV-------SFPASVQLHTAVEMHHWCIPFSV 270

Query: 413 TGYPKPKITWYRDNEVIESGGHFHVE-------TSERHAILTIRDASNVDTAPYRVVAEN 465
            G P P + W  +  V+        E        + RH  L +   ++V+   Y ++A N
Sbjct: 271 DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330

Query: 466 DLGMDSAIVKIQISDRP 482
             G  SA +     D P
Sbjct: 331 PFGQASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 69.0 bits (168), Expect = 9e-13
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 19/128 (14%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
           A+N+ G    +  S  V +  P           ++   A++ H+     ++ G P P++ 
Sbjct: 232 AENDVG---RAEVSVQVNVSFPA---------SVQLHTAVEMHHWCIPFSVDGQPAPSLR 279

Query: 326 WLKGSREITPSARHHIFAEGDTY-------TLIINSVYGVDADEYVCRAVNKGGVKSTKA 378
           WL     +  ++                   L +N    V+   Y   A N  G  S   
Sbjct: 280 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 339

Query: 379 ELIIMTAP 386
               M  P
Sbjct: 340 MAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 7/71 (9%)

Query: 26  EVSLTKNGRVVQSDDRFKFTVLDDYII-------IFIKEIRKEDAGDYTVNLSNSSGSVS 78
            +    NG V+          L+           + + +    + G+YT+  +N  G  S
Sbjct: 277 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 336

Query: 79  GTFTINITGLP 89
            +        P
Sbjct: 337 ASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 10/112 (8%), Positives = 26/112 (23%), Gaps = 1/112 (0%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
                +  GD+  ++    G    +           +    K   L    +         
Sbjct: 165 VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVTSDL 223

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP 113
           +  + T    N  G    +  +N++      +             ++   P 
Sbjct: 224 NRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPA 275

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score =  108 bits (272), Expect = 1e-28
 Identities = 24/93 (25%), Positives = 41/93 (44%)

Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT 349
           +  P I+  L++     +  A+F    TG P+PT  W K  + IT   ++ +  +   + 
Sbjct: 4   SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63

Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           L I+     D+  Y C   N  G  S+  +L I
Sbjct: 64  LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 74.6 bits (184), Expect = 1e-16
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
           I + P      +  DT            +  TG P+P   W +D + I  GG + +   +
Sbjct: 3   ISSKPVIVTGLQ--DTTVSS-DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK 59

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSA 472
               L I      D+  Y    +N  G  S+
Sbjct: 60  GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 18/87 (20%), Positives = 35/87 (40%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
               +      K  +   G+       TK+G+ +    ++K +       + I +    
Sbjct: 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72

Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGL 88
          D+G YT  + NS+GSVS +  + I  +
Sbjct: 73 DSGLYTCTVKNSAGSVSSSCKLTIKAI 99

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score =  108 bits (273), Expect = 1e-28
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS-W 528
             +         P+ P  PT+      S+ + W     +GG  I ++ VE ++      W
Sbjct: 6   SGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDW 64

Query: 529 IRVGNT---RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           I   +       ++ ITGL  G  Y+FRV A N+ G S+PS  S     
Sbjct: 65  ILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV 113

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score =  104 bits (261), Expect = 7e-27
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 6/120 (5%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
           G                   P  P  P ++      V ++W  P  +GG  IQ + ++  
Sbjct: 1   GSSGSSG---SQPDHGRLSPPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYK 56

Query: 230 EV-GSDAWQRVNVAICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
           ++     W     AI      + I  L +G  Y+FRV A N  G S PS+ S    +   
Sbjct: 57  KLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 98.2 bits (245), Expect = 1e-24
 Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           SSGS            P  P     +S  ++ +  + W P   +GG  +  + VE + + 
Sbjct: 2   SSGSSGSQPDHGRLSPPEAP-DRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLK 59

Query: 133 MP-HWICISTT--CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDK 189
               WI  ++       +  + GL +G  Y F V A+N  G   P     P         
Sbjct: 60  KVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS--G 117

Query: 190 PSP 192
           PS 
Sbjct: 118 PSS 120

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score =  111 bits (280), Expect = 2e-28
 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 13/198 (6%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPP---KYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
             PP+G +  S ++  T  + W      K+       +Y V  +     +    +     
Sbjct: 5   MMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPV---VTQVG 202
            +++V GL     Y F VM                    +    P+ P   V     +  
Sbjct: 64  LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSM---TAHGTTFELVPTSPPKDVTVVSKEGK 120

Query: 203 GDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ--INIPNLIEGRQY 260
              + ++W  P +  G +I GY I      +       +     ++    I  L     Y
Sbjct: 121 PKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPY 179

Query: 261 EFRVYAQNEAGLSLPSSA 278
            F++ A+N  G+   S A
Sbjct: 180 YFKIQARNSKGMGPMSEA 197

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 64.1 bits (156), Expect = 7e-12
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 479 SDRPD-PPQFPTVEDIGHDSLALVWRAP---IWDGGSNITNYIVEKREHPMSSW-IRVGN 533
           +D P  PP       + HD++ + W           ++   Y V  + +  ++   +  N
Sbjct: 1   ADLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN 60

Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
               +  +TGL P   YEF V        S  S T+   T
Sbjct: 61  ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTT 100

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 58.7 bits (142), Expect = 5e-10
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 87  GLPGPPIGPLDVS--EITKHTCTLHWNPPKYDGGLKVTHYVVERR---DISMPHWICIST 141
            +P  P   + V   E    T  ++W PP    G K+T Y++      +  +  W+    
Sbjct: 103 LVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPV 161

Query: 142 TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKP 190
             +  T  +Q LT    Y F + A N  GMGP  E +     K+ +   
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHHHH 210

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 28/178 (15%)

Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAEN 465
               Y    + W  +     +  + +   +    ++T          P       V+   
Sbjct: 38  DSRYY---TVRWKTNIP--ANTKYKNANATTLSYLVT-------GLKPNTLYEFSVMVTK 85

Query: 466 DLG--MDSAIVKIQ-ISDRP-DPPQFPTVE--DIGHDSLALVWRAPIWDGGSNITNYIVE 519
                  S           P  PP+  TV   +    ++ + W+ P    G  IT YI+ 
Sbjct: 86  GRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIY 144

Query: 520 KREHPMSSW----IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
                 +      I        T  I  L+    Y F++ A N  G    S      T
Sbjct: 145 YSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 202

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score =  107 bits (270), Expect = 3e-28
 Identities = 21/92 (22%), Positives = 33/92 (35%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
            AP I + +R+       N +F   +   P   + W     E+  S++ H        TL
Sbjct: 7   HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL 66

Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            I   +  D+  Y     N  G  S  A L +
Sbjct: 67  EILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 75.0 bits (185), Expect = 8e-17
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
           +  AP+  +  R         G+N    +     P  ++ WY +   ++     H   + 
Sbjct: 5   LDHAPRITLRMRSHRVP---CGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMD--SAIVKIQISD 480
               L I D    D+  YR V  N  G     A + +   D
Sbjct: 62  GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 20/81 (24%), Positives = 35/81 (43%)

Query: 7   IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 66
           +P G NT+  +        EV    NG  +Q   +  +T     + + I +   +D+G Y
Sbjct: 20  VPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTY 79

Query: 67  TVNLSNSSGSVSGTFTINITG 87
               +N  G  S   T+++TG
Sbjct: 80  RAVCTNYKGEASDYATLDVTG 100

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  111 bits (278), Expect = 3e-28
 Identities = 35/208 (16%), Positives = 60/208 (28%), Gaps = 21/208 (10%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
           A  +  +          +N+  +  C  +G   P + W     + T    ++        
Sbjct: 1   AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60

Query: 349 --------TLIINSVYGVDADEYVCRAVNKGG--VKSTKAELIIMTAPKFNVPPRFRDTA 398
                    +   SV   D   Y C    +GG      K +LI++  P            
Sbjct: 61  DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120

Query: 399 YFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-------LTIRD 450
               G   V+      G P  + TW++D  V+ +        S    +       L    
Sbjct: 121 I---GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177

Query: 451 ASNVDTAPYRVVAENDLGMDSAIVKIQI 478
            S  DT  Y   A N  G       +++
Sbjct: 178 LSASDTGEYSCEARNGYGTPMTSNAVRM 205

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score =  107 bits (270), Expect = 3e-28
 Identities = 26/91 (28%), Positives = 41/91 (45%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
           A  I+   R+    +  +A+F C   G P PT++WL+  + ++ SARH +       T  
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73

Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           I+SV   D   Y     N  G +  +  L I
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 368 VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
           ++     S+K  L    A +    PR   +    +GE+        G P P +TW R  +
Sbjct: 1   MHHHHHHSSKTTL----AARILTKPR---SMTVYEGESARFSCDTDGEPVPTVTWLRKGQ 53

Query: 428 VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           V+ +     V T++  +   I      D   Y VV EN  G   A   + I
Sbjct: 54  VLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 26  EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
            V+  + G+V+ +  R + T         I  ++  D G+Y+V + NS G     FT+ I
Sbjct: 45  TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score =  107 bits (269), Expect = 6e-28
 Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 441
           I   PK  +P   R T     GE + + +PF G P+P++ W +    +++    HV TS+
Sbjct: 18  IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSD 76

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
              +  +R A+  D+  Y +  + +   D+A ++I++ ++ 
Sbjct: 77  FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 79.0 bits (195), Expect = 7e-18
 Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 6/119 (5%)

Query: 271 GLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI---QNHNAQFQCTITGCPKPTISWL 327
                 + +  V I++      P+I +P                      G P+P + W 
Sbjct: 2   SSGSSGTLAQPVTIREIAEP--PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWT 59

Query: 328 KGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
           KG   +  S R H+          +      D+ EY      +    +    + ++   
Sbjct: 60  KGGAPLDTS-RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.4 bits (165), Expect = 7e-14
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
           +        G+   + + + G    +V  TK G  + +  R      D   + F+++  +
Sbjct: 30  LRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRTSDFDTVFFVRQAAR 88

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINITGLPG 90
            D+G+Y +++   +   + T  I +    G
Sbjct: 89  SDSGEYELSVQIENMKDTATIRIRVVEKAG 118

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score =  107 bits (268), Expect = 6e-28
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR-VGNTRFT 537
           S  P PP    V +    S+ L W +        +T Y ++ R        + V     T
Sbjct: 5   SSGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATT 61

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
             +I GLSP  +Y FRV A N  GR  PS      T 
Sbjct: 62  RYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTG 98

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 93.1 bits (232), Expect = 4e-23
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
           +  P PP   L V+E T  + TL W+         VT+Y ++ R                
Sbjct: 5   SSGPKPP-IDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVAT 60

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
           T + + GL+   EY F V+AVN  G GPP E +          + S P
Sbjct: 61  TRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTG-----EQSGP 103

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 85.4 bits (212), Expect = 3e-20
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 184 KSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI 243
            S    P PP   VVT+     V L+WD         +  Y I     G++   +  V  
Sbjct: 2   SSGSSGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQ-EVDG 57

Query: 244 CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
            A ++ +I  L    +Y FRV A N  G   PS A  +   +  
Sbjct: 58  VATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQS 101

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score =  106 bits (266), Expect = 1e-27
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
           G            ++     P  P   V + +G   + +SW +P  +    +QGY ++  
Sbjct: 1   GSSGSSG---SHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQ 55

Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSV--QIKDP 287
            +      R+N+   A + + + +L+    Y FRV AQ++ G         ++  Q+  P
Sbjct: 56  LLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGP 115

Query: 288 MAA 290
            + 
Sbjct: 116 SSG 118

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 91.7 bits (228), Expect = 2e-22
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           SSGS     +    G+P  P   L  S +   +  + W  P+ +    +  Y VE + ++
Sbjct: 2   SSGSSGSHDSRLTAGVPDTP-TRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQLLN 58

Query: 133 MPHWICISTT-CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
                 ++      T+ +V+ L     Y+F V A ++ G G   EG+  I++     + S
Sbjct: 59  GGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES-----QVS 113

Query: 192 PPG 194
            P 
Sbjct: 114 GPS 116

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 87.5 bits (217), Expect = 7e-21
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFT 537
             PD P       +G  SL + W+ P  +    +  Y VE +        R+   N   T
Sbjct: 16  GVPDTPTRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQLLNGGELHRLNIPNPAQT 73

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           ++ +  L P H Y FRV A++  G          I +
Sbjct: 74  SVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES 110

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score =  106 bits (266), Expect = 1e-27
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
           + P+    P          GE+V +    TG      TW +  + I+   H  VE SE  
Sbjct: 6   SGPQIIQFPE---DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG 62

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
           + LTI  A       Y ++ EN LG   A V + + D+PDPP   
Sbjct: 63  SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 97.4 bits (243), Expect = 2e-24
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
            P+II    +       + +    +TG    T +W+K  ++I  S    +    +   L 
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66

Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTA 398
           I +        Y     NK G +  +  L ++  P    PP    + 
Sbjct: 67  ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD---PPAGTPSG 110

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 21/94 (22%), Positives = 39/94 (41%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
           P    +  G++ ++     G QP+  +  K  + +Q  +  K    ++   + I   R+E
Sbjct: 14  PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQE 73

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGP 95
             G YT+ + N  GS      + +   P PP G 
Sbjct: 74  HCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score =  106 bits (267), Expect = 1e-27
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 11/117 (9%)

Query: 468 GMDSAIVKIQIS---DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP 524
           G   +   I      + P PP    + +IG  S+ L +R   +DG ++I+ ++VE +   
Sbjct: 1   GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGV 59

Query: 525 MS---SWIRVGNT----RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           +     W+ +          +M +  L+P   Y FR+   N+ G S PS  S  I T
Sbjct: 60  VGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score =  102 bits (257), Expect = 3e-26
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 9/122 (7%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI--- 226
           G          I +  P + P PP    ++ +G   V L + +P  DG + I  + +   
Sbjct: 1   GSSGSSG---TISSGVPPELPGPPTNLGISNIGPRSVTLQF-RPGYDGKTSISRWLVEAQ 56

Query: 227 DKHEVGSDAWQRVNVAICAPSQIN--IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQI 284
                  + W  ++     P   +  +P+L     Y FR+   N  G S PS  S  +Q 
Sbjct: 57  VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116

Query: 285 KD 286
             
Sbjct: 117 LQ 118

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 88.9 bits (221), Expect = 3e-21
 Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 14/128 (10%)

Query: 74  SGSVSGTFTINI-TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           S   SGT +  +   LPGPP     +S I   + TL + P  YDG   ++ ++VE +   
Sbjct: 2   SSGSSGTISSGVPPELPGPPTNL-GISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGV 59

Query: 133 MPHWIC------ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
           +           +S      +  V  L     Y F +  VN  G  PP +    I+    
Sbjct: 60  VGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT--- 116

Query: 187 YDKPSPPG 194
               S P 
Sbjct: 117 --LQSGPS 122

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score =  105 bits (265), Expect = 2e-27
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT--Y 348
           +AP  I   ++   ++  + + +C I+  P P + W + +  +  +       + +T   
Sbjct: 14  RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP 391
           TL+I  V   DA  Y   AVN+ GV +    L +   P   +P
Sbjct: 74  TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-E 430
           G            AP F   P+       + G++V ++   +  P PK+ W R+NE++  
Sbjct: 2   GHHHHHHSHEHKRAPMFIYKPQ--SKKVLE-GDSVKLECQISAIPPPKLFWKRNNEMVQF 58

Query: 431 SGGHFHVETSER-HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
           +     +         L I+D +  D   Y V A N+ G+ +   ++ ++ RP+   
Sbjct: 59  NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 7   IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAG 64
           + EGD+ K++   +   P ++   +N  +VQ +        D+   + + IK++ K+DAG
Sbjct: 27  VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86

Query: 65  DYTVNLSNSSGSVSGTFTINITGLP 89
            YTV+  N +G  +    +++T  P
Sbjct: 87  WYTVSAVNEAGVTTCNTRLDVTARP 111

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score =  114 bits (287), Expect = 2e-27
 Identities = 69/496 (13%), Positives = 141/496 (28%), Gaps = 54/496 (10%)

Query: 105 TCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVM 164
            C+  W  P   G        +E+R                T+  +  L+ G  Y   + 
Sbjct: 13  QCS--WKAPSGTGRGTDYEVCIEQRS-------RSCYQLEKTSIKIPALSHGD-YEITIN 62

Query: 165 AVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT-QVGGDFVNLSW--DKPLDDGGSRI 221
           ++++ G       +N    ++    P  P I  ++       + L W     +    S +
Sbjct: 63  SLHDFGSSTSKFTLNE---QNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNV 119

Query: 222 QGYWIDKHEVGSDAWQRVNVA-------ICAPSQINIPNLIEGRQYEFRVYAQ-NEAGLS 273
                   +   +  + V                      +E   +   +    +    S
Sbjct: 120 IWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFS 179

Query: 274 LPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI 333
                S+   +K        +  V  ++   +   +  F C         +        I
Sbjct: 180 GLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLI 239

Query: 334 TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
                           + I ++    +       V           +     P  + P +
Sbjct: 240 HLDGE--------NVAIKIRNI--SVSASSGTNVVFTTEDNIFGTVIFAGYPP--DTPQQ 287

Query: 394 FRDTAYFDKGENVVVKI---PFTGYPKPKITWYRDNEVIESGGHFHVETSERHA----IL 446
                     + ++        T    P+ T Y   E   SG +  ++ +E        L
Sbjct: 288 L--NCETHDLKEIICSWNPGRVTALVGPRATSYTLVES-FSGKYVRLKRAEAPTNESYQL 344

Query: 447 TIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR--PDPPQFPTVEDIGHDSLALVWRA 504
             +   N +   + + A N LG   + + + I+++  P  P    V+DI   ++ L W  
Sbjct: 345 LFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHL 404

Query: 505 PIWDGGSNITNYIVEKREHPMSSW----IRVGNTRFTTMAITGLSPGHQYEFRVYA--EN 558
           P      N    I  K+ + +       I+        +A+  L+P   Y FR+    E 
Sbjct: 405 PGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTET 464

Query: 559 VYGRSDPSTTSDLITT 574
            +  S  S     +TT
Sbjct: 465 FWKWSKWSNKKQHLTT 480

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 78.3 bits (192), Expect = 2e-15
 Identities = 50/390 (12%), Positives = 99/390 (25%), Gaps = 47/390 (12%)

Query: 205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
               SW  P   G        I++       +Q         + I IP L  G  YE  +
Sbjct: 11  VWQCSWKAPSGTGRGTDYEVCIEQRS--RSCYQ------LEKTSIKIPALSHG-DYEITI 61

Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTI 324
            + ++ G S      N   +        PEI   L+ +          +    G   P  
Sbjct: 62  NSLHDFGSSTSKFTLNEQNVSLIPD--TPEI---LQLSADFSTSTLYLKWNDRGSVFPHR 116

Query: 325 SWLKGSREITPSARHHIFAEGDTYTLI----------INSVYGVDADEYVCR---AVNKG 371
           S +    ++       +       T +            S   ++   +       ++  
Sbjct: 117 SNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNL 176

Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAY-----FDKGENVVVKIPFTGYPKPKITWYRDN 426
                +         + +  P  +   +        G ++             +  + + 
Sbjct: 177 HFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNC 236

Query: 427 EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
            +I             +  + IR+ S   +A            +     I     PD PQ
Sbjct: 237 PLI--------HLDGENVAIKIRNIS--VSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQ 286

Query: 487 FPTVEDIGHDSLALVWRAPIWDG--GSNITNYIVEKR---EHPMSSWIRVGNTRFTTMAI 541
               E      +   W         G   T+Y + +    ++               +  
Sbjct: 287 QLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLF 346

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDL 571
             L     Y F + A N  GRS  +   ++
Sbjct: 347 QMLPNQEIYNFTLNAHNPLGRSQSTILVNI 376

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 6/123 (4%)

Query: 53  IFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT--GLPGPPIGPLDVSEITKHTCTLHW 110
           +  + +  ++  ++T+N  N  G    T  +NIT    P  P     V +I      L W
Sbjct: 344 LLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTS-FKVKDINSTAVKLSW 402

Query: 111 NPPKYDGGLKVTHYVVERRDISMPHWICISTTC---HDTTFIVQGLTEGQEYLFHVMAVN 167
           + P     +     +  ++  S+     ++            +  L     Y F +    
Sbjct: 403 HLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCST 462

Query: 168 ENG 170
           E  
Sbjct: 463 ETF 465

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score =  110 bits (277), Expect = 3e-27
 Identities = 46/221 (20%), Positives = 76/221 (34%), Gaps = 14/221 (6%)

Query: 65  DYTVNLS--NSSGSVSGTFTINITGLPGPPIGPLDV--SEITKHTCTLHWNPPKYD-GGL 119
            Y   L+  N  G  S    + I         P+    +    +   + W  P+      
Sbjct: 73  RYLATLTVRNLVGK-SDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKY 131

Query: 120 KVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
            +   V+  +   +  W     T H  T++   L E + YL  V  V  +G G P     
Sbjct: 132 ILEWCVLSDKAPCITDWQQEDGTVH-RTYLRGNLAESKCYLITVTPVYADGPGSP----E 186

Query: 180 PIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDK-PLDDGGSRIQGYWIDKHEVGSDAWQR 238
            IKA      PS        +VG +   L WD+ P+D     I+ Y I    +  +    
Sbjct: 187 SIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN-ETA 245

Query: 239 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           VNV   + ++  + +L     Y  R+ A  + G       +
Sbjct: 246 VNVDS-SHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 285

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 91.4 bits (227), Expect = 1e-20
 Identities = 33/229 (14%), Positives = 61/229 (26%), Gaps = 30/229 (13%)

Query: 91  PPIGPLDV-------SEITKHTCTLHWNP-PKYDGGLKVTHYVVERRDISMPHWICISTT 142
            P                   T  L W   P ++   K+  Y V             + T
Sbjct: 3   RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ---NYT 59

Query: 143 CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVG 202
            + T   V        YL  +   N  G          +   +   + + P + +     
Sbjct: 60  VNATKLTV--NLTNDRYLATLTVRNLVGKSDA----AVLTIPACDFQATHPVMDLKAFPK 113

Query: 203 GDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA-----WQRVNVAICAPSQINIPNLIEG 257
            + + + W  P +     ++ Y ++   +   A     WQ+ +  +         NL E 
Sbjct: 114 DNMLWVEWTTPRES----VKKYILEWCVLSDKAPCITDWQQEDGTV--HRTYLRGNLAES 167

Query: 258 RQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 306
           + Y   V      G   P S    ++   P     P +       N   
Sbjct: 168 KCYLITVTPVYADGPGSPESIKAYLKQAPPSK--GPTVRTKKVGKNEAV 214

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 11/118 (9%)

Query: 459 YRVVAENDLGM--DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNY 516
             +   N +G    + +       +   P          + L + W  P      ++  Y
Sbjct: 76  ATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPR----ESVKKY 131

Query: 517 IVEKREHPMS-----SWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           I+E             W +   T   T     L+    Y   V      G   P +  
Sbjct: 132 ILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK 189

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 65.6 bits (160), Expect = 7e-12
 Identities = 26/170 (15%), Positives = 46/170 (27%), Gaps = 18/170 (10%)

Query: 413 TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY-----RVVAENDL 467
             Y    + W   ++       +  E    H      +      A        V      
Sbjct: 129 KKY---ILEWCVLSDKAPCITDWQQEDGTVHRTYLRGN-----LAESKCYLITVTPVYAD 180

Query: 468 GM-DSAIVKIQIS-DRPDPPQFPTVEDIGHDSLALVWRA-PIWDGGSNITNYIVEKREHP 524
           G      +K  +    P        + +G +   L W   P+      I NY +  R   
Sbjct: 181 GPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII 240

Query: 525 MSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            +      ++  T   ++ L+    Y  R+ A    G  D    +   TT
Sbjct: 241 GNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT--FTT 288

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 480 DRPD-PPQFP----TVEDIGHDSLALVWRA-PIWDGGSNITNYIVEKREHPMSSWIRVGN 533
           DRP   P F          G+ ++ LVW+  P ++    I +Y V              N
Sbjct: 2   DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----N 57

Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
                  +T      +Y   +   N+ G+SD +  +
Sbjct: 58  YTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLT 93

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score =  103 bits (259), Expect = 7e-27
 Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 6/100 (6%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-----GNT 534
           D P  P    VE     +  + +  P   GG  I  Y  E R      W          +
Sbjct: 5   DTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63

Query: 535 RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
               + I GL P   Y  R+ A N  G  + S  S+  T 
Sbjct: 64  MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 98.6 bits (246), Expect = 5e-25
 Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
           S  D PS P I  V         + +D+P   GG  I  Y  +   VG + W        
Sbjct: 2   SHMDTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 60

Query: 245 APSQ---INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
             S    + I  L     Y  R+ A N  GL   S+AS
Sbjct: 61  EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 90.1 bits (224), Expect = 5e-22
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 88  LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC----ISTTC 143
            P  P       E    T  + ++ P+  GG+ +  Y  E R +    W           
Sbjct: 6   TPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63

Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
            +    + GL     Y   + A+N  G+G  
Sbjct: 64  MEGIVTIVGLKPETTYAVRLAALNGKGLGEI 94

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score =  103 bits (259), Expect = 8e-27
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH-IFAEGDTYT 349
             P   V L + +  +  +      + G PKP +SWL+  + + P  R     AEG    
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           L I +    DA  Y C+AVN+ G +  +A L +
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-ESGGHFHVETSER 442
             P F V    +      +G++V++ I   G PKP ++W R+ + +      F  E    
Sbjct: 4   APPTFKVSLMDQSVR---EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60

Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
              L I  A   D   Y   A N+ G      ++++
Sbjct: 61  LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIII-FIKEIRK 60
               + EG +  + I   G+    VS  +N + V+ D R      +  +    I    +
Sbjct: 12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER 71

Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITG 87
           DAG YT    N  G+      + + G
Sbjct: 72 GDAGFYTCKAVNEYGARQCEARLEVRG 98

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  105 bits (263), Expect = 9e-27
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
           +  +   ++ +      P     + +   ++   A+F C + G P P + W K    +  
Sbjct: 25  NEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE 84

Query: 336 SARHHIFAEGD-TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
           S    I  + +   +L I+ V G D  +Y C+AVN  G  +  AEL++ T  K      
Sbjct: 85  SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEG 143

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 91.1 bits (226), Expect = 9e-22
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 7/144 (4%)

Query: 352 INSVYGV-DADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF----RDTAYFDKGENV 406
           I+ + G   +       +N   V++  A L  +   K +V P F     D    + G   
Sbjct: 1   ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVE-GSAA 59

Query: 407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER-HAILTIRDASNVDTAPYRVVAEN 465
                  GYP P++ W++D+  ++   HF ++  E  +  LTI +    D A Y   A N
Sbjct: 60  RFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN 119

Query: 466 DLGMDSAIVKIQISDRPDPPQFPT 489
            LG  +   ++ +       +   
Sbjct: 120 SLGEATCTAELLVETMGKEGEGEG 143

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 1/105 (0%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIII-FIKEIRK 60
              + + EG   +      G    EV   K+   V+    F+    ++      I E+  
Sbjct: 48  ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG 107

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHT 105
           +D   YT    NS G  + T  + +  +     G  +  E  +  
Sbjct: 108 DDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDEEEE 152

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  110 bits (275), Expect = 1e-26
 Identities = 47/250 (18%), Positives = 76/250 (30%), Gaps = 22/250 (8%)

Query: 256 EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN----HNAQ 311
             R          +A  S              +   AP    P R    +      +  +
Sbjct: 83  TQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVR 142

Query: 312 FQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVNK 370
           F+C   G P P+ISWLK  RE     R          ++L++ SV   D   Y C   NK
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 202

Query: 371 GGVKSTKAELIIMTAPKFNVPPRFRDT---AYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
            G       L ++       P              G +V          +P I W +  E
Sbjct: 203 FGSIRQTYTLDVLERSPH-RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVE 261

Query: 428 V----IESGGHFHVE---------TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV 474
           V    +   G  +V          T +   +L++ + +  D   Y  +A N +G      
Sbjct: 262 VNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSA 321

Query: 475 KIQISDRPDP 484
            + +    + 
Sbjct: 322 WLVVLPAEEE 331

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  106 bits (266), Expect = 2e-25
 Identities = 45/318 (14%), Positives = 80/318 (25%), Gaps = 47/318 (14%)

Query: 289 AAKAPEIIV-PLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGD 346
           AA+ P                  +  C    G P     W+K    + PS R  +     
Sbjct: 4   AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV----G 59

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM---------------TAPKFNVP 391
              L + +    D+  Y CR      V    +  +                         
Sbjct: 60  PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119

Query: 392 PRFRDTAYFDK-------GENVVVKIPFTGYPKPKITWYRDNEVIE-SGGHFHVETSERH 443
           P +      DK          V  + P  G P P I+W ++            ++   + 
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 179

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE-------DIGHD 496
             L +      D   Y  V EN  G       + + +R                  +G D
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD 239

Query: 497 -----------SLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLS 545
                         + W   +   GS +            ++     +     +++  ++
Sbjct: 240 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVT 299

Query: 546 PGHQYEFRVYAENVYGRS 563
                E+   A N  G S
Sbjct: 300 FEDAGEYTCLAGNSIGFS 317

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 83.5 bits (206), Expect = 1e-17
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 16/138 (11%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
            +N+ G       + ++ + +    +         N  A+   + +F C +    +P I 
Sbjct: 199 VENKFGSI---RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ 255

Query: 326 WLKGSR----EITPSARHHI---------FAEGDTYTLIINSVYGVDADEYVCRAVNKGG 372
           WLK       ++ P    ++           + +   L +++V   DA EY C A N  G
Sbjct: 256 WLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG 315

Query: 373 VKSTKAELIIMTAPKFNV 390
                A L+++ A +  V
Sbjct: 316 FSHHSAWLVVLPAEEELV 333

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 30  TKNGRVVQSDDRFK-FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGL 88
            KNGR  + + R     +      + ++ +   D G+YT  + N  GS+  T+T+++   
Sbjct: 158 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER 217

Query: 89  PGPP 92
               
Sbjct: 218 SPHR 221

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score =  102 bits (257), Expect = 1e-26
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTL 350
              +   + +A   +  + ++ C I    + T ++W  G R++  S ++ I  E     L
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60

Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            +  +  +D   Y C+ VN  G  S+ AEL +
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 403 GENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
           G +V        Y +  ++TWY     +E+   + +   +  AIL ++D + +D   YR 
Sbjct: 16  GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRC 75

Query: 462 VAENDLGMDSAIVKIQI 478
              ND G DS+  ++ +
Sbjct: 76  KVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 7  IPEGDNTK--VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
            EG + K   KI    DQ  +V+     R +++ ++++ T  D   I+++K+I K D G
Sbjct: 13 GEEGGHVKYVCKIE-NYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDG 71

Query: 65 DYTVNLSNSSGSVSGTFTINITGLP 89
           Y   + N  G  S    + + G+ 
Sbjct: 72 TYRCKVVNDYGEDSSYAELFVKGVR 96

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  109 bits (274), Expect = 2e-26
 Identities = 31/230 (13%), Positives = 56/230 (24%), Gaps = 20/230 (8%)

Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI-------TGCPKPTISWLK 328
              +         A          +    ++      +C         +  P+  ++W K
Sbjct: 2   DPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK 61

Query: 329 GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 388
                T               L +      D+  YVC   N         EL +      
Sbjct: 62  NDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDA 121

Query: 389 NVPPRFRDTAYFDKGENVVVKIP-----FTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
              P            + V+  P            KI WY+D+ +++        +    
Sbjct: 122 -FLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE-KFLSVRGT 179

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMD------SAIVKIQISDRPDPPQF 487
             L + D +  D   YR V              S  ++I+       P  
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVI 229

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  100 bits (250), Expect = 2e-23
 Identities = 35/237 (14%), Positives = 63/237 (26%), Gaps = 29/237 (12%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP--LRNANAIQNHNAQFQCTITGCPKPT 323
            +N +        S  +++ +   A  P I  P  L  + +                   
Sbjct: 100 TRNASYCD---KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVK 156

Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII- 382
           I W K S  +       +   G T  L+++ V   DA  Y C        +       I 
Sbjct: 157 IQWYKDSLLLDKDNEKFLSVRGTT-HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215

Query: 383 --MTAPKFNVPPRF---RDTAYFDKGENVVVK---IPFTGYPKPKITWYRDNEV------ 428
             +   K    P       T     G  + +       TG P   + W+  N+       
Sbjct: 216 LRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAY 275

Query: 429 ----IESGGHFHVETSER---HAILTIRDASNVDT-APYRVVAENDLGMDSAIVKIQ 477
               +  G       +        L     +  D    ++ V  N L   +    ++
Sbjct: 276 PGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 18  FYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77
           F      +++   K+  ++  D+    +V     ++ + ++  EDAG Y   L+ +    
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLL-VHDVALEDAGYYRCVLTFAHEGQ 206

Query: 78  SGTFTINIT 86
               T +I 
Sbjct: 207 QYNITRSIE 215

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  108 bits (270), Expect = 2e-26
 Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 17/225 (7%)

Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPT 323
               +       S +  + +KDP    A    +  +    ++   A   C IT    K +
Sbjct: 69  TELEDPM---AGSTTIHLYVKDP----AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDS 121

Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
           +S ++           + F+       II     +D++ YVC+ +  G   ++   + + 
Sbjct: 122 VSLMREGGRQVLRKTVYFFSPWRG--FIIRKAKVLDSNTYVCKTMVNGRESTS-TGIWLK 178

Query: 384 TAPKFNVPPRFRDTA---YFDKGENVVVKIPFTGYPKPKITWYRDNEV---IESGGHFHV 437
                  PP+ +         +GE   +    T          +  +    I     F  
Sbjct: 179 VNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQD 238

Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
              ++   L++      D   Y  VA ND+G  +A +  Q+ +  
Sbjct: 239 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 84.2 bits (208), Expect = 4e-18
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 18/200 (9%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
           AP I                 +C   G    ++ W      I+P        E    TL 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEW---DGPISPYWTLDP--ESPGSTLT 54

Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK-FNVPPRFRDTAYFDKGENVVVKI 410
             +    +   Y C  +      ST   L +      +N+  +        +G+  V+  
Sbjct: 55  TRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQ---EVTVVEGQEAVLPC 111

Query: 411 PFTGY-PKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND-LG 468
             T    K  ++  R+          +  +  R     IR A  +D+  Y      +   
Sbjct: 112 LITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG--FIIRKAKVLDSNTYVCKTMVNGRE 169

Query: 469 MDSAIVKIQISDR-PDPPQF 487
             S  + ++++   P+PPQ 
Sbjct: 170 STSTGIWLKVNRVHPEPPQI 189

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score =  102 bits (256), Expect = 3e-26
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           PG P   + +S    +T  L W+PPK   G ++  Y ++           I     D  F
Sbjct: 8   PGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHF 64

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
            V GL +G  Y+F + A N  G+G   E       ++P D   P 
Sbjct: 65  TVTGLHKGTTYIFRLAAKNRAGLGEEFEKE----IRTPEDLSGPS 105

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 3/105 (2%)

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
             S    P  P + +++    +   L W  P +  G  + GY +            ++  
Sbjct: 1   GSSGSSGPGRPTM-MISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFG 58

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
                   +  L +G  Y FR+ A+N AGL               
Sbjct: 59  KDDQH-FTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDLS 102

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFT 537
           S  P  P    +     ++  L W  P    G  +  Y ++      +    +       
Sbjct: 5   SSGPGRPTM-MISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQ 62

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
              +TGL  G  Y FR+ A+N  G  +         
Sbjct: 63  HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTP 98

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  107 bits (269), Expect = 3e-26
 Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 20/209 (9%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           S G   G   I    +   P   + V +++     + W PP+      +  Y +   +  
Sbjct: 2   SPGISGGGGGIP---VIDGPTQ-ILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGG 57

Query: 133 MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
                        + + VQ L  G  Y   + AV                      +   
Sbjct: 58  ---KTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASST-------QFTTEIDA 107

Query: 193 PGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS--QIN 250
           P    V       ++L WD       +  Q Y +    +  + +  V V        +  
Sbjct: 108 PKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTT 163

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           + +L+ G +Y   + A   +  S+P++ +
Sbjct: 164 LTDLVPGTEYGVGISAVMNSKQSIPATMN 192

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  106 bits (265), Expect = 1e-25
 Identities = 37/219 (16%), Positives = 66/219 (30%), Gaps = 24/219 (10%)

Query: 66  YTVNLS--NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
           Y V++S    +   S   +   T     P   L V   T  +  L W+  + +       
Sbjct: 81  YEVSISAVRGTNE-SDASSTQFTTEIDAPKN-LRVGSRTATSLDLEWDNSEAE----AQE 134

Query: 124 YVVERRDISMPHWICISTTCHD---TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP 180
           Y V    ++   +  +         T   +  L  G EY   + AV  +    P      
Sbjct: 135 YKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATM--- 191

Query: 181 IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
               +   +   P   +VT      ++L W K        I  Y I        + +   
Sbjct: 192 ----NARTELDSPRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEVTV 243

Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
                 +   + +L  G +Y   + A+     SL S+  
Sbjct: 244 PR--DRTSYTLTDLEPGAEYIISITAERGRQQSLESTVD 280

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 81.4 bits (201), Expect = 3e-17
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 5/111 (4%)

Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
             + A  +    S    +      D P+   V      S++L+W          I +Y +
Sbjct: 175 VGISAVMNSK-QSIPATMNARTELDSPRDLMVTASSETSISLIWTKA----SGPIDHYRI 229

Query: 519 EKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
                   S         T+  +T L PG +Y   + AE    +S  ST  
Sbjct: 230 TFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVD 280

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 74.1 bits (182), Expect = 8e-15
 Identities = 23/115 (20%), Positives = 35/115 (30%), Gaps = 9/115 (7%)

Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
             + A      +S     Q +   D P+   V      SL L W        +    Y V
Sbjct: 83  VSISAVRGTN-ESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNS----EAEAQEYKV 137

Query: 519 EKRE----HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
                         +  G    T   +T L PG +Y   + A     +S P+T +
Sbjct: 138 VYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMN 192

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 71.0 bits (174), Expect = 1e-13
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
            D P    V D+      + W  P       +  Y +   E   +++        +  ++
Sbjct: 15  IDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPL--SQYSV 72

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTS 569
             L PG +YE  + A      SD S+T 
Sbjct: 73  QALRPGSRYEVSISAVRGTNESDASSTQ 100

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 65.2 bits (159), Expect = 8e-12
 Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 20/168 (11%)

Query: 8   PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT 67
            E +  + K+ Y+     +       + +    +   T L                 +Y 
Sbjct: 128 SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGT-------------EYG 174

Query: 68  VNLS-NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVV 126
           V +S   +   S   T+N       P   L V+  ++ + +L W      G   + HY +
Sbjct: 175 VGISAVMNSKQSIPATMNARTELDSPRD-LMVTASSETSISLIWTKA--SG--PIDHYRI 229

Query: 127 ERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
                S      ++     T++ +  L  G EY+  + A         
Sbjct: 230 TFTPSSGISSE-VTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLE 276

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  107 bits (269), Expect = 3e-26
 Identities = 38/245 (15%), Positives = 74/245 (30%), Gaps = 21/245 (8%)

Query: 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 306
           S ++  N        +R     +       SA+  + +KDP    A    V  +     +
Sbjct: 51  SILSTNNATFQNTGTYRCTEPGDPL---GGSAAIHLYVKDP----ARPWNVLAQEVVVFE 103

Query: 307 NHNAQFQCTITGC-PKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYV 364
           + +A   C +T    +  +S ++   R +     +            I+    + + +Y 
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAKFIQSQDYQ 160

Query: 365 CRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTA---YFDKGENVVVKIPFTGYPKPKI 420
           C A+  G  V S    L +        PP            +GE   +    +       
Sbjct: 161 CSALMGGRKVMSISIRLKVQKVI--PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFD 218

Query: 421 TWYRDNE---VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477
            + + N     I     FH    ++   L +          Y  VA N  G  S  +  +
Sbjct: 219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278

Query: 478 ISDRP 482
           + +  
Sbjct: 279 VVESA 283

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 81.5 bits (201), Expect = 4e-17
 Identities = 26/200 (13%), Positives = 61/200 (30%), Gaps = 20/200 (10%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
           P I   +             +C   G    ++ W        PS    ++++G +  L  
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDG-----PPSPHWTLYSDGSSSILST 55

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK-FNVPPRFRDTAYFDKGENVVVKIP 411
           N+    +   Y C         S    L +    + +NV  +        + ++ ++   
Sbjct: 56  NNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQ---EVVVFEDQDALLPCL 112

Query: 412 FTGY-PKPKITWYR-DNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND-LG 468
            T    +  ++  R     +    ++           TI  A  + +  Y+  A      
Sbjct: 113 LTDPVLEAGVSLVRVRGRPLMRHTNYSFSPW---HGFTIHRAKFIQSQDYQCSALMGGRK 169

Query: 469 MDSAIVKIQISDRPD-PPQF 487
           + S  +++++      PP  
Sbjct: 170 VMSISIRLKVQKVIPGPPAL 189

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 71.9 bits (176), Expect = 6e-14
 Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 14/134 (10%)

Query: 266 AQNEAGLSLPSSASNSVQIK-DPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTI 324
           A            S S+++K   +    P + +       I+   AQ  C+ +       
Sbjct: 163 ALMGGR----KVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFD 218

Query: 325 SWLKGS---REITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 381
            +L+ +     I   +  H        TL ++ V    A  Y C A N  G  ST     
Sbjct: 219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278

Query: 382 IMTAPKFNVPPRFR 395
           ++            
Sbjct: 279 VV------ESAGNS 286

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score =  101 bits (253), Expect = 5e-26
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDT 347
           A   P  I    N +  +    +    ++G P P +SW    R +     H +  +E   
Sbjct: 2   AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           ++LI   V   DA  Y C A N+ G  +   +L +
Sbjct: 62  HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
           M  P+F   P         +G    +    +G P P ++WY +   ++S     +  SE+
Sbjct: 3   MGPPRFIQVPENMSID---EGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK 59

Query: 443 -HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
               L        D   Y  VA+N  G  +  V++ +  +
Sbjct: 60  GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 31 KNGRVVQSDDRFKFTVLDD-YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITG 87
           NGR VQSDD  K  V +     +  + +R  DAG Y     N +G  + T  +++  
Sbjct: 41 LNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  101 bits (254), Expect = 5e-26
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD-- 346
           ++ AP   + L++    +     F C + G PKP I W K  ++I+P + H+        
Sbjct: 5   SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
           T +L   +    D   Y   A N  G  S    L++    
Sbjct: 65  TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN 104

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 73.2 bits (180), Expect = 6e-16
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-ESGGHFHVETSERH 443
           AP F +  +        +G  V       G PKPKI W++D + I     H+ ++     
Sbjct: 8   APFFEMKLKHYKIF---EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64

Query: 444 -AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
              L    ++  D   Y ++A N  G  S   ++ +      P
Sbjct: 65  TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 7   IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAG 64
           I EG         AG+   ++   K+G+ +           D      +       +D G
Sbjct: 20  IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDG 79

Query: 65  DYTVNLSNSSGSVSGTFTINITGLPGPP 92
           +YT+  +N  G +S T  + +  +   P
Sbjct: 80  NYTIMAANPQGRISCTGRLMVQAVNSGP 107

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  104 bits (260), Expect = 7e-26
 Identities = 34/195 (17%), Positives = 53/195 (27%), Gaps = 13/195 (6%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKP--TISWLKGSREITPSARHHIFAEGDTYTL 350
           P            +       C          +  WL     +  +     F       L
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68

Query: 351 IINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNV---PPRFRD---TAYFDKG 403
            I +V   D   Y C   +           + ++  P+      P          Y   G
Sbjct: 69  YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128

Query: 404 ENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 463
           +NV ++    G P P I W +  E + S        +     L I +    D   Y   A
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV----LKIFNIQLEDEGIYECEA 184

Query: 464 ENDLGMDSAIVKIQI 478
           EN  G D    +I +
Sbjct: 185 ENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 79.9 bits (197), Expect = 2e-17
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 6/119 (5%)

Query: 266 AQNEAGLSLPSSASNSVQIKDP--MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT 323
             + +      S    +             +I+V  ++  A+   N   +C   G P P 
Sbjct: 85  VSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPD 144

Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           I W K    +  +A            L I ++   D   Y C A N  G    +A + +
Sbjct: 145 IRWRKVLEPMPSTAEIST----SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  104 bits (260), Expect = 1e-25
 Identities = 29/209 (13%), Positives = 57/209 (27%), Gaps = 22/209 (10%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY---- 348
             +     +    +N + +  CT +G   P + W       T    ++            
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 349 ----TLIINSVYGVDADEYVCRAVNKGGVKSTKA--ELIIMTAPKFNVPPRFRDTAYFDK 402
                +  +SV   D  EY C    +GG    +    L ++  P           +    
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV---PSSVTI 118

Query: 403 GENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI--------LTIRDASN 453
           G   V+      G P  + +W++D   + +            +         L     + 
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178

Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRP 482
            D+  Y   A+N  G         +    
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 74.6 bits (183), Expect = 2e-15
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 16/135 (11%)

Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT-ITGCPKPT 323
               E G       S  + +  P     P        ++    + A   C+   G P   
Sbjct: 83  MVSEEGG-QNYGEVSIHLTVLVP-----PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSE 136

Query: 324 ISWLKGSREITPSARHHI--------FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS 375
            SW K    +  +               +  +  LI + V   D+ EY C+A N  G   
Sbjct: 137 YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAM 196

Query: 376 TKAELIIMTAPKFNV 390
                  M A + NV
Sbjct: 197 RSEAA-HMDAVELNV 210

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score =  100 bits (251), Expect = 2e-25
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 2/109 (1%)

Query: 468 GMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS 527
           G             P  P+      +    + L WR P  D   +   Y V   +  ++ 
Sbjct: 4   GSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIAR 63

Query: 528 W--IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                  +     + I  L P   Y FRV A+N +G  + S    + T 
Sbjct: 64  ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQ 112

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score =  100 bits (251), Expect = 2e-25
 Identities = 26/92 (28%), Positives = 37/92 (40%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
             PS P   V + V   F+ L+W  P  D       Y +   + G    +  N +     
Sbjct: 16  PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEM 75

Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           Q+ I NL+    Y FRV AQN+ G    S+  
Sbjct: 76  QVTIQNLMPATVYIFRVMAQNKHGSGESSAPL 107

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 95.6 bits (238), Expect = 9e-24
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           SSGS           LP  P   +  S ++     L W  P  D       Y V      
Sbjct: 2   SSGSSGEHAPATTGPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEG 60

Query: 133 MPHW-ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
           +    +  ++   +    +Q L     Y+F VMA N++G G       P++ ++  +   
Sbjct: 61  IARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSA---PLRVETQPESGP 117

Query: 192 PPG 194
             G
Sbjct: 118 SSG 120

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 99.3 bits (248), Expect = 3e-25
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
           AP I   L N       + +  CT +G P P I W K +  +   +   +  +     L 
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLT 67

Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 388
           I  V   D   Y C+A +  G    +A  II  A + 
Sbjct: 68  IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 72.8 bits (179), Expect = 7e-16
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 380 LIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET 439
           ++   AP        + T+    GE++ V    +G P P+I W++DNE +       ++ 
Sbjct: 5   VLERVAPTITGNLENQTTS---IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61

Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
             R   LTIR     D   Y   A + LG         I       +   +E
Sbjct: 62  GNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE---GAQEKTNLE 108

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 30  TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
            K+   +  D        D    + I+ +RKED G YT    +  G         I G  
Sbjct: 45  FKDNETLVEDSGIVLK--DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102

Query: 90  GPP 92
              
Sbjct: 103 EKT 105

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 99.3 bits (247), Expect = 5e-25
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 471 SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNIT----NYIVEKREHPMS 526
           S +   ++      P  P V  + H S+ L W     +           + +E+ +  M 
Sbjct: 6   SGMEPHKVVP-LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64

Query: 527 SWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           S+  +     T   + GL P   Y+FR+   +  G  + S    + TT
Sbjct: 65  SYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATT 112

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 85.8 bits (212), Expect = 3e-20
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 14/126 (11%)

Query: 72  NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH----YVVE 127
           +S  S      +     P PP+    V ++T H+  L+W+  + +           + +E
Sbjct: 2   SSGSSGMEPHKVVPLSKPHPPV----VGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIE 57

Query: 128 RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
             D  M  +  I T  + T  +V+GL     Y F +   + +G       ++        
Sbjct: 58  EEDPKMHSYGVIYTG-YATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT----- 111

Query: 188 DKPSPP 193
            + S P
Sbjct: 112 TRESGP 117

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 72.7 bits (178), Expect = 9e-16
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI----DKHEVGSDAWQRVNVAICA 245
            S P  PVV +V    + L WD    +     Q  W+    ++ +    ++    +    
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYG--VIYTGY 73

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
            ++  +  L     Y+FR+   + +G    S   +    ++ 
Sbjct: 74  ATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score =  104 bits (260), Expect = 7e-25
 Identities = 38/277 (13%), Positives = 69/277 (24%), Gaps = 19/277 (6%)

Query: 19  YAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY-TVNLSNSSGSV 77
           Y       +    N   +  +      +      +   +I   +      +         
Sbjct: 35  YFHVNANYIVWKTNHFTIPKEQYTI--INRTASSVTFTDIASLNIQLTCNILTFGQLEQN 92

Query: 78  SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI 137
               TI     P  P   L             W+  + +  L+ T++ ++    +     
Sbjct: 93  VYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGR-ETHLE-TNFTLKSEWATHKFAD 149

Query: 138 CI-STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYD--KPSPPG 194
           C        +  +             V A N  G               P    KP+PP 
Sbjct: 150 CKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS-----DHINFDPVYKVKPNPPH 204

Query: 195 IPVVTQVGG--DFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ--IN 250
              V         + L+W  P       I  Y I      +  W ++     A ++    
Sbjct: 205 NLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFT 263

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
           + +L    +Y FR+    E G    S  S        
Sbjct: 264 VQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 300

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 71.8 bits (175), Expect = 8e-14
 Identities = 42/284 (14%), Positives = 71/284 (25%), Gaps = 25/284 (8%)

Query: 309 NAQFQCTI-------TGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD 361
           N    C +              I W      I P  ++ I     +     +        
Sbjct: 21  NFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI-PKEQYTIINRTASSVTFTDIASLNIQL 79

Query: 362 EYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKIT 421
                   +         +I    P+              K          T       T
Sbjct: 80  TCNILTFGQLEQNVYGITIISGLPPEKPKNLSCI-VNEGKKMRCEWDGGRETHLE----T 134

Query: 422 WYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY--RVVAENDLGM---DSAIVKI 476
            +       +      +           D S V        V AEN LG    D      
Sbjct: 135 NFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDP 194

Query: 477 QISDRPDPPQFPTVEDI--GHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT 534
               +P+PP   +V +       L L W  P       +  Y ++ R    S+W ++   
Sbjct: 195 VYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILK-YNIQYRTKDASTWSQIPPE 253

Query: 535 RF----TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                 ++  +  L P  +Y FR+      G+   S  S+  + 
Sbjct: 254 DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 297

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 59.8 bits (144), Expect = 6e-10
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 8/130 (6%)

Query: 67  TVNLSNSSGSVS---GTFTINITGLPGPPIGP-LDVSEITKHTCTLHWNPPKYDGGLKVT 122
            V   N+ G V+     F       P PP    +  SE       L W  P     + + 
Sbjct: 175 WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILK 234

Query: 123 HYVVERRDISMPHW---ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
            Y ++ R      W       T    ++F VQ L    EY+F +  + E+G G   +   
Sbjct: 235 -YNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 293

Query: 180 PIKAKSPYDK 189
                +  D+
Sbjct: 294 EASGITYEDR 303

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 98.2 bits (245), Expect = 7e-25
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDT 347
           +   P  +    +    +    +  C ++G P P +SW    + + P + H +   E   
Sbjct: 6   SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
           ++LII  V   DA  Y C A N+ G  S   EL++    
Sbjct: 66  HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER-H 443
            P F   P   D    + G+   +    +G P P ++W  D + +       +   E   
Sbjct: 9   RPHFLQAPG--DLTVQE-GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
             L I   ++ D   Y  +A N  G +S  +++ ++ +   P
Sbjct: 66  HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYII-IFIKEIR 59
           P  L + EG   ++    +G  P  ++S   +G+ V+ D   K  V ++ +  + I+ + 
Sbjct: 16  PGDLTVQEGKLCRMDCKVSGL-PTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVT 74

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPP 92
             DAG YT   +N +G  S +  + +      P
Sbjct: 75  SRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 97.9 bits (244), Expect = 2e-24
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 6/101 (5%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-----GN 533
           S  P  P    VE     +  + +  P   GG  I  Y  E R      W          
Sbjct: 5   SSGPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 63

Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           +    + I GL P   Y  R+ A N  G  + S  S+  T 
Sbjct: 64  SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 104

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 96.4 bits (240), Expect = 5e-24
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 8/119 (6%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC----ISTTCH 144
           P  P       E    T  + ++ P+  GG+ +  Y  E R +    W            
Sbjct: 8   PSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 65

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGG 203
           +    + GL     Y   + A+N  G+G             P  +PS P +       G
Sbjct: 66  EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ--PVREPSAPKLEGSGPSSG 122

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 93.7 bits (233), Expect = 4e-23
 Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
             S    PS P I  V         + +D+P   GG  I  Y  +   VG + W      
Sbjct: 1   GSSGSSGPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 59

Query: 243 ICAPSQ---INIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
               S    + I  L     Y  R+ A N  GL   S+AS 
Sbjct: 60  AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 100

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 95.5 bits (238), Expect = 6e-24
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
           SS S+ +++       AP     L++   I+  +   QC++ G P P I+WL   + I  
Sbjct: 2   SSGSSGMEV-------APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQY 54

Query: 336 SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           +       E     L I      D   Y C A N  G  S  A + +
Sbjct: 55  ARSTC---EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 70.0 bits (172), Expect = 5e-15
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 376 TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF 435
           +     +  AP F+   +  D A  + G++ V++    G P P+ITW  + + I+     
Sbjct: 2   SSGSSGMEVAPSFSSVLK--DCAVIE-GQDFVLQCSVRGTPVPRITWLLNGQPIQYARST 58

Query: 436 HVETSERHAILTIRDASNVDTAPYRVVAENDLGMD--SAIVKIQ 477
                   A L I+DA   D   Y  +AEN LG    SA V + 
Sbjct: 59  CEAG---VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 30 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
            NG+ +Q               + I++   ED G YT    N+ G VS +  + +
Sbjct: 46 LLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score =  101 bits (253), Expect = 8e-24
 Identities = 40/303 (13%), Positives = 84/303 (27%), Gaps = 24/303 (7%)

Query: 2   PNALYIPEGDNTKVK-IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
              L    GD+  +       +    V          S       +    ++   + ++ 
Sbjct: 13  RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL---RSVQL 69

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK 120
            D+G+Y+      +G  +GT  + +  +P          +         W P      L 
Sbjct: 70  HDSGNYSCY---RAGRPAGTVHLLV-DVPPEEPQLSCFRKSPLSNVVCEWGPRS-TPSL- 123

Query: 121 VTHYVVERRDISMPHWICISTTCHD-------TTFIVQGLTEGQEYLFHVMAVNENGMGP 173
            T  V+  R             C         +  +     +   Y+  +   +  G   
Sbjct: 124 TTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKF 183

Query: 174 PLEGINPIKAKSPYDKPSPPGIPVVTQVGGD--FVNLSWDKPLD-DGGSRIQGYWIDKHE 230
                          +P PP    VT V  +  +++++W  P   +       + +    
Sbjct: 184 SKTQTFQG---CGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRA 240

Query: 231 VGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
             S  +    V         I +   G ++  ++ AQ E G    S  S          +
Sbjct: 241 ERSKTFTTWMV-KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTES 299

Query: 291 KAP 293
           ++P
Sbjct: 300 RSP 302

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 91.8 bits (227), Expect = 2e-20
 Identities = 42/298 (14%), Positives = 85/298 (28%), Gaps = 25/298 (8%)

Query: 292 APEIIVPLRNANAIQNHNAQFQC-TITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
            P   V      ++   +    C  +      T+ W+                 G    L
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA---GMGRRL 62

Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK- 409
           ++ SV   D+  Y C      G  +    L++   P+      FR +       NVV + 
Sbjct: 63  LLRSVQLHDSGNYSCYR---AGRPAGTVHLLVDVPPEEPQLSCFRKSPL----SNVVCEW 115

Query: 410 --IPFTGYPKPKITWYRDNEVIESGGHFH--VETSERHAILTIRDASNVDTAPY--RVVA 463
                       +   R  +   +         + E             D++ Y   +  
Sbjct: 116 GPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCV 175

Query: 464 ENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALV--WRAP-IWDGGSNITNYI 517
            + +G     +   +     +PDPP   TV  +  +   L   W+ P  W+       + 
Sbjct: 176 ASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFE 235

Query: 518 VEKREHPMSSWIRVGNTRFTTMA-ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           +  R     ++             I     G ++  ++ A+  +G+ + S  S     
Sbjct: 236 LRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMG 293

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 64.1 bits (155), Expect = 3e-11
 Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 5/150 (3%)

Query: 67  TVNLSNSSGSVS---GTFTINITGLPGPPIGP-LDVSEITKHTCTLHWNPP-KYDGGLKV 121
           ++ +++S GS      TF       P PP    +          ++ W  P  ++     
Sbjct: 172 SMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYR 231

Query: 122 THYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI 181
             + +  R      +            ++     G  ++  + A  E G G   E     
Sbjct: 232 LRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEA 291

Query: 182 KAKSPYDKPSPPGIPVVTQVGGDFVNLSWD 211
                 +  SPP    V+           D
Sbjct: 292 MGTPWTESRSPPAENEVSTPMQALTTNKDD 321

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 98.1 bits (244), Expect = 1e-23
 Identities = 37/215 (17%), Positives = 64/215 (29%), Gaps = 17/215 (7%)

Query: 91  PPIGPLDVSEITKHTC--TLHWNPPKYDGGLKVTHYVVERRDISMPHWICI-STTCHDTT 147
           PP  P ++S I          W+  + +  L+ T++ ++    +     C        + 
Sbjct: 7   PPEKPKNLSCIVNEGKKMRCEWDGGR-ETHLE-TNFTLKSEWATHKFADCKAKRDTPTSC 64

Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEG-INPIKAKSPYDKPSPPGIPVVTQVGG--D 204
            +             V A N  G         +P+       KP+PP    V        
Sbjct: 65  TVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVY----KVKPNPPHNLSVINSEELSS 120

Query: 205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ--INIPNLIEGRQYEF 262
            + L+W  P       I  Y I      +  W ++     A ++    + +L    +Y F
Sbjct: 121 ILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVF 179

Query: 263 RVYAQNEAGLSLPSSASNSVQIKDPMAA--KAPEI 295
           R+    E G    S  S             K P  
Sbjct: 180 RIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPSF 214

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 64.2 bits (156), Expect = 6e-12
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 460 RVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIG--HDSLALVWRAPIWDGGSNIT 514
            V AEN LG    D          +P+PP   +V +       L L W  P       I 
Sbjct: 79  WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVI-IL 137

Query: 515 NYIVEKREHPMSSWIRVGNTRF----TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
            Y ++ R    S+W ++         ++  +  L P  +Y FR+      G+   S  S+
Sbjct: 138 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 197

Query: 571 LITT 574
             + 
Sbjct: 198 EASG 201

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 63.9 bits (155), Expect = 8e-12
 Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 8/134 (5%)

Query: 67  TVNLSNSSGSVS---GTFTINITGLPGPPIGP-LDVSEITKHTCTLHWNPPKYDGGLKVT 122
            V   N+ G V+     F       P PP    +  SE       L W  P     + + 
Sbjct: 79  WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVI-IL 137

Query: 123 HYVVERRDISMPHW---ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
            Y ++ R      W       T    ++F VQ L    EY+F +  + E+G G   +   
Sbjct: 138 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 197

Query: 180 PIKAKSPYDKPSPP 193
                +  D+PS  
Sbjct: 198 EASGITYEDRPSKE 211

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 4/90 (4%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW--IRVGNTRFTTM 539
           P+ P+  +        +   W           TN+ ++               +T  +  
Sbjct: 8   PEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHKFADCKAKRDTPTSCT 65

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
                      E  V AEN  G+      +
Sbjct: 66  VDYSTVYFVNIEVWVEAENALGKVTSDHIN 95

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 94.4 bits (235), Expect = 2e-23
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 335
           S +S  VQ       +   II  L + +  +  +A F+C I+      + W      +  
Sbjct: 3   SGSSGLVQ------GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA 56

Query: 336 SARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
           +  + I A+ G  + L +  +   D+      A    G +   A L +   P
Sbjct: 57  NELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKP 104

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 10/93 (10%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 375 STKAELIIM-TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG 433
           S+ +  ++              D    + G +   +   +      + W+ D   + +  
Sbjct: 2   SSGSSGLVQGRRVHIIEDLE--DVDVQE-GSSATFRCRISPANYEPVHWFLDKTPLHANE 58

Query: 434 HFHVETSE-RHAILTIRDASNVDTAPYRVVAEN 465
              ++     + +LT+R  +  D+      A +
Sbjct: 59  LNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGD 91

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 9/84 (10%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 7   IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD-YIIIFIKEIRKEDAGD 65
           + EG +   +   +      V    +   + +++  +       Y ++ ++++  +D+G 
Sbjct: 25  VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGT 84

Query: 66  YTVNLSNSSGSVSGTFTINITGLP 89
                   +G    +  + +T  P
Sbjct: 85  IYF----EAGDQRASAALRVTEKP 104

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 93.5 bits (233), Expect = 2e-23
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
            PK     R         G    +++ F G P P  TW   +          V+      
Sbjct: 2   KPKILTASR---KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
            +    A   D+  Y++  +N+LG D AI ++ +
Sbjct: 59  SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 92.0 bits (229), Expect = 8e-23
 Identities = 18/91 (19%), Positives = 32/91 (35%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
            P+I+   R            +    G P PT +W  G      +    + A+  T ++ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELII 382
             S    D+  Y  +  N+ G      E+I+
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 69.7 bits (171), Expect = 6e-15
 Identities = 12/84 (14%), Positives = 26/84 (30%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
             + I  G    +++ + G      + T                      IF    ++ 
Sbjct: 9  SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRA 68

Query: 62 DAGDYTVNLSNSSGSVSGTFTINI 85
          D+G+Y + + N  G     F + +
Sbjct: 69 DSGNYKLKVKNELGEDEAIFEVIV 92

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 92.8 bits (231), Expect = 6e-23
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
           ++ A      L N    +   A F C     P  T++W KG  E+  S +H    EG T 
Sbjct: 5   SSGANCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTL 63

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            L I+++   D+D Y C      G   ++A+L++
Sbjct: 64  RLTISALEKADSDTYTCDI----GQAQSRAQLLV 93

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 14/105 (13%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFT---GYPKPKITWYRDNEVIESGGHFHVETSE 441
           A  F       +    ++    V    FT    +P   +TW +    + + G        
Sbjct: 8   ANCFTEELT--NL-QVEEKGTAV----FTCKTEHPAATVTWRKGLLELRASGKHQPSQEG 60

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
               LTI      D+  Y            A + +Q   R   P 
Sbjct: 61  LTLRLTISALEKADSDTYTCDIGQAQS--RAQLLVQ--GRRSGPS 101

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 31  KNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPG 90
           K    +++  + + +     + + I  + K D+  YT       G       + + G   
Sbjct: 43  KGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTC----DIGQAQSRAQLLVQGRRS 98

Query: 91  PP 92
            P
Sbjct: 99  GP 100

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 92.9 bits (231), Expect = 6e-23
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 482 PDPPQF-PTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
           P  P          ++S  L W+ P          YI+E  +     +  V   + T   
Sbjct: 10  PATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYVGKETMCT 68

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           + GL     Y  RV A N  G S  S T  L T+
Sbjct: 69  VDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTS 102

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
            +P  PI  L+      ++ TL W  P          Y++E  D +   +  +     +T
Sbjct: 8   PVPATPILQLEECCTHNNSATLSWKQPPLSTV-PADGYILELDDGNGGQFREV-YVGKET 65

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
              V GL     Y   V A N+ G+ P  +    +  ++        G
Sbjct: 66  MCTVDGLHFNSTYNARVKAFNKTGVSPYSK---TLVLQTSEGSGPSSG 110

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 183 AKSPYDKPSPPGI-PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV 241
           + S    P+ P +         +   LSW +P         GY ++  +     ++ V V
Sbjct: 3   SGSSGPVPATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVYV 61

Query: 242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
                +   +  L     Y  RV A N+ G+S  S   
Sbjct: 62  --GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL 97

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 92.4 bits (230), Expect = 7e-23
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 286 DPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEG 345
              ++   E++  + +        A F+C ++   K T  W K   E+ PS R  I   G
Sbjct: 2   SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVG 60

Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
             + L+I+ V   D  +Y           S  A+L  +    
Sbjct: 61  RFHKLVIDDVRPEDEGDYTFVPDGYAL--SLSAKLNFLEIKV 100

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 61.2 bits (149), Expect = 7e-12
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 1/83 (1%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
            E  V K   +   K    WY++   +       +    R   L I D    D   Y  V
Sbjct: 23  AEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFV 81

Query: 463 AENDLGMDSAIVKIQISDRPDPP 485
            +      SA +         P 
Sbjct: 82  PDGYALSLSAKLNFLEIKVSGPS 104

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 5   LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
           L +   +    K   + ++       KNG  V+   R   + +  +  + I ++R ED G
Sbjct: 18  LTVKAAEQAVFKCEVSDEKV-TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEG 76

Query: 65  DYTVNLSNSSGSVSGTFTINITGLPGPPIG 94
           DYT      + S+S         + GP  G
Sbjct: 77  DYTFVPDGYALSLSAKLNFLEIKVSGPSSG 106

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 92.4 bits (230), Expect = 8e-23
 Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
           ++        L++   ++   A  +C ++    P + W  G+  + P  ++ +  EG   
Sbjct: 5   SSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAML 63

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
            L++ ++   D+  Y C      G ++T A L +   P 
Sbjct: 64  ELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPS 98

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 55.8 bits (135), Expect = 6e-10
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 391 PPRF----RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAIL 446
           P RF    +D     +G    ++   +    P + W   N V+  G  + +        L
Sbjct: 8   PVRFQEALKDL-EVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLEL 65

Query: 447 TIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
            +R+    D+  Y     +     SA + +     P  P
Sbjct: 66  VVRNLRPQDSGRYSCSFGDQTT--SATLTVT--ALPSGP 100

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 22  DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 81
                V       V++  D++        + + ++ +R +D+G Y+     S G  + + 
Sbjct: 34  SVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSC----SFGDQTTSA 89

Query: 82  TINITGLPGPP 92
           T+ +T LP  P
Sbjct: 90  TLTVTALPSGP 100

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 98.5 bits (244), Expect = 8e-23
 Identities = 38/308 (12%), Positives = 77/308 (25%), Gaps = 18/308 (5%)

Query: 2   PNALYIPEGDNTKV-----KIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIK 56
            +A  +  GD         +     D   ++       +     + + +      II + 
Sbjct: 7   VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLP 66

Query: 57  EIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYD 116
            +    A         +S  +     +     P  P     +  +T  +    W P   +
Sbjct: 67  HLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGP-E 125

Query: 117 GGLKVTHYVVERRDISMPHWIC-------ISTTCHDTTFIVQGLTEGQEYLFHVMAVNEN 169
             L  +  +   +                        +   + L   Q     V A N  
Sbjct: 126 THLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENAL 185

Query: 170 GMG---PPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI 226
           G             +    P    +    P         + LSW+          +   +
Sbjct: 186 GTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK-CEL 244

Query: 227 D-KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
             K + G  +W  V        Q  +  L+    Y  ++           S  S S++++
Sbjct: 245 RHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 304

Query: 286 DPMAAKAP 293
               A AP
Sbjct: 305 TTERAAAP 312

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 70.0 bits (170), Expect = 3e-13
 Identities = 42/286 (14%), Positives = 68/286 (23%), Gaps = 21/286 (7%)

Query: 309 NAQFQCTITGC-----PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
                C I        P+P I W  G+       +  +        + +  +    A   
Sbjct: 17  PITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLS 76

Query: 364 VCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWY 423
                        + EL     P                        P T  P       
Sbjct: 77  CSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKS 136

Query: 424 RD---NEVIESGGHFHVETSERHAILTIRDASNVDTAPY--RVVAENDLGM-DSAIVKIQ 477
                N   +          +  +  +I     +        V AEN LG   S  + + 
Sbjct: 137 FKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLD 196

Query: 478 ISD--RPDPPQFPTVEDIGH------DSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI 529
             D  + +PP   T++            L L W         N    +  K +   +SW 
Sbjct: 197 PMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWA 256

Query: 530 RVG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            VG          + GL P   Y  ++           S  S  + 
Sbjct: 257 LVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLE 302

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 91.7 bits (228), Expect = 2e-22
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 268 NEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWL 327
           +    S  +SA  +V+      A   +    LRN  A +   A  +C ++      + W 
Sbjct: 2   SSGS-SGRTSAMLTVR------ALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWW 52

Query: 328 KGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
           KG   +    RH +  +G    L I  +   DA EY+C      G + T A L +   P
Sbjct: 53  KGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMP 107

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 10/119 (8%)

Query: 369 NKGGVKSTKAELIIM-TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 427
           + G    T A L +     KF    R  +     +G   V++   +      + W++ +E
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFTEGLR--NE-EATEGATAVLRCELSK--MAPVEWWKGHE 56

Query: 428 VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
            +  G    +        L IR     D   Y  +     G +     + +   P  P 
Sbjct: 57  TLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPS 111

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 26  EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
            V   K    ++  DR           + I+ +  EDAG+Y        G    +  + +
Sbjct: 48  PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLC----MCGKERTSAMLTV 103

Query: 86  TGLPGPP 92
             +P  P
Sbjct: 104 RAMPSGP 110

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 91.6 bits (228), Expect = 2e-22
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
           PD  + P V         + W  P+   G+++T Y +E       S          +  I
Sbjct: 8   PDQCKPPQVTCRSATCAQVNWEVPL-SNGTDVTEYRLEWGGVE-GSMQICYCGPGLSYEI 65

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            GLSP   Y  RV A +V G    S     +T 
Sbjct: 66  KGLSPATTYYCRVQALSVVGAGPFSEVVACVTP 98

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 9/109 (8%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
           +  P     P  V+  +     ++W  P    G  VT Y +E   +     IC       
Sbjct: 5   SSGPDQC-KPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGVEGSMQICYCGP--G 60

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
            ++ ++GL+    Y   V A++  G GP  E +  +   S     S P 
Sbjct: 61  LSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPS-----SGPS 104

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 18/93 (19%), Positives = 26/93 (27%), Gaps = 4/93 (4%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           P     P VT        ++W+ P    G+ +  Y ++   V                  
Sbjct: 8   PDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGVEGSMQICYCGPG---LSY 63

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 282
            I  L     Y  RV A +  G    S     V
Sbjct: 64  EIKGLSPATTYYCRVQALSVVGAGPFSEVVACV 96

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 91.5 bits (227), Expect = 2e-22
 Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 15/107 (14%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS-WIRVGNT------ 534
             PP  P V  +  +S+ L W  P  + G  I  + V+ R       W    +       
Sbjct: 3   TYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61

Query: 535 -------RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                  +  T ++T L P H Y FR+ A      +  S TS     
Sbjct: 62  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 108

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 85.4 bits (211), Expect = 3e-20
 Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 14/113 (12%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG-SDAWQRVNVAI----- 243
             PP  P VT++  + V L W  P  + G  I  + +    VG    WQ  N  I     
Sbjct: 3   TYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61

Query: 244 ------CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
                       ++ +L     Y FR+ A      +  S+ S    ++ P AA
Sbjct: 62  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ-PGAA 113

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 80.3 bits (198), Expect = 2e-18
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR-------------DISM 133
           G   PP  P +V+ ++  +  L W  P+ + GL +  + V+ R             +I  
Sbjct: 1   GSTYPP-TPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58

Query: 134 PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
                 S      T  V  L     Y F ++AV  N     
Sbjct: 59  GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 99

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 91.3 bits (227), Expect = 2e-22
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDT 347
           ++    I   L+    ++  +  F+C ++         W  G + +  S+R     +G  
Sbjct: 5   SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRK 64

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
           Y L++      DA E V          ++KA LI+     
Sbjct: 65  YILVVREAAPSDAGEVVFSVRG----LTSKASLIVRERSG 100

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 403 GENVVVKIPFT-GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
           GE+   +   +         W    + + S   F      R  IL +R+A+  D      
Sbjct: 23  GESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVF 82

Query: 462 VAENDLGMDSAIVKIQISDRPDPPQ 486
                    S IV+    +R  P  
Sbjct: 83  SVRGLTSKASLIVR----ERSGPSS 103

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 20  AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
                     T  G+ V S  RF+ T      I+ ++E    DAG+       S   ++ 
Sbjct: 34  HESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVF----SVRGLTS 89

Query: 80  TFTINITGLPGPPIG 94
             ++ +    GP  G
Sbjct: 90  KASLIVRERSGPSSG 104

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 90.9 bits (226), Expect = 3e-22
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
            +   +I+ PL +           +C I+        W K    +  S R  +  +G  +
Sbjct: 4   GSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIH 61

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
            L+I +    D  +YV          +  A++ +++ P
Sbjct: 62  KLVIANALTEDEGDYVF--APDAYNVTLPAKVHVISGP 97

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 10/101 (9%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
             K   P    D    + G+ + +K   +        W ++   ++      V    R  
Sbjct: 7   GLKILTPLT--DQ-TVNLGKEICLKCEISE--NIPGKWTKNGLPVQESDRLKVVQKGRIH 61

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
            L I +A   D   Y    +       A V +        P
Sbjct: 62  KLVIANALTEDEGDYVFAPDAYNVTLPAKVHVI-----SGP 97

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 5  LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
            +  G    +K   + + P     TKNG  VQ  DR K         + I     ED G
Sbjct: 17 QTVNLGKEICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEG 74

Query: 65 DYTVNLSNSSGSVSGTFTINITGLPG 90
          DY    +  + +V+    +++   P 
Sbjct: 75 DYVF--APDAYNVTLPAKVHVISGPS 98

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 90.9 bits (226), Expect = 3e-22
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
           ++        L+   A +   A  QC ++      + W KG   +    R+ +  +G   
Sbjct: 5   SSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRC 62

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
            L I+ +   DA EY C      G + T A L +   P
Sbjct: 63  ELQIHDLSVADAGEYSCMC----GQERTSATLTVRALP 96

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
             +F    +   T    +G    ++   +      + W +  E +  GG + ++      
Sbjct: 8   PARFTQDLK---TKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRC 62

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
            L I D S  D   Y  +   +    SA + ++      P +F
Sbjct: 63  ELQIHDLSVADAGEYSCMCGQERT--SATLTVR----ALPARF 99

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 24 PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83
             V   K    ++   R+          + I ++   DAG+Y+       G    + T+
Sbjct: 35 VAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSC----MCGQERTSATL 90

Query: 84 NITGLP 89
           +  LP
Sbjct: 91 TVRALP 96

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 93.4 bits (232), Expect = 4e-22
 Identities = 28/209 (13%), Positives = 55/209 (26%), Gaps = 31/209 (14%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFAEGDTY--- 348
              +    N    +      +C +      P + WL+  + +  +               
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 349 ------TLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFD 401
                  L I S+   D  +Y C          S    + +   P F   P   D     
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPE--DRTV-A 119

Query: 402 KGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
                 +     G P+P  + W +D   + +               ++       T+ + 
Sbjct: 120 ANTPFNLSCQAQGPPEPVDLLWLQDAVPLATA-------PGHGPQRSLHVPGLNKTSSFS 172

Query: 461 VVAENDLGM---DSAIVKIQISDRPDPPQ 486
             A N  G+    +A + +       P Q
Sbjct: 173 CEAHNAKGVTTSRTATITVL------PQQ 195

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 31/215 (14%)

Query: 184 KSPYDKPSPPGIPVV----TQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239
            +P +     G+        QV G+   + W +     G  ++    D  +      +  
Sbjct: 7   GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLR----DGQILELA--DSTQTQVPLGEDE 60

Query: 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL 299
                  SQ+ I +L      +++          +       ++         P  +   
Sbjct: 61  QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-------LPYFLEEP 113

Query: 300 RNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 358
            +     N      C   G P+P  + WL+ +  +  +  H     G   +L +  +   
Sbjct: 114 EDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGL--N 166

Query: 359 DADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
               + C A N  GV +++   I +      +P +
Sbjct: 167 KTSSFSCEAHNAKGVTTSRTATITV------LPQQ 195

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 17/118 (14%)

Query: 391 PPRFR---DTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESG---------GHFHV 437
              F          +G    ++         P++ W RD +++E           G    
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPD---PPQFPTVE 491
           +     + L I      DT  Y+ +         S    + +   P     P+  TV 
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVA 119

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 89.3 bits (222), Expect = 9e-22
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
           ++    II PL +       + + +C ++    P + WLK  + I  S ++ +  EG   
Sbjct: 5   SSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMA 63

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            L+I      DA EY C          + A L +
Sbjct: 64  MLVIRGASLKDAGEYTCEVEA----SKSTASLHV 93

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 391 PPRF----RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAIL 446
           P        D  +   GE+V ++   +    P + W +D + I     + V      A+L
Sbjct: 8   PAAIIKPLEDQ-WVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65

Query: 447 TIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
            IR AS  D   Y    E      +A + ++  ++   P
Sbjct: 66  VIRGASLKDAGEYTCEVEASKS--TASLHVE--EKASGP 100

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 11/88 (12%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 5   LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
            ++  G++ +++   +      V   K+ + ++   ++         ++ I+    +DAG
Sbjct: 18  QWVAPGEDVELRCELSRA-GTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAG 76

Query: 65  DYTVNLSNSSGSVSGTFTINITGLPGPP 92
           +YT  +  S  +     ++++      P
Sbjct: 77  EYTCEVEASKST----ASLHVEEKASGP 100

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 88.5 bits (220), Expect = 1e-21
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 5/94 (5%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
           A    E+  PL          A F+  ++  P     W    + +  S    I  +G  +
Sbjct: 2   AMALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKH 60

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            LI+++       E   +A N      + A L +
Sbjct: 61  ILILHNCQLGMTGEVSFQAAN----TKSAANLKV 90

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 4/84 (4%)

Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
           M   +   P    +      GE    +I  +  P     W    + + +     +    +
Sbjct: 3   MALIEVEKPLYGVEVF---VGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGK 58

Query: 443 HAILTIRDASNVDTAPYRVVAEND 466
             IL + +     T      A N 
Sbjct: 59  KHILILHNCQLGMTGEVSFQAANT 82

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 4/51 (7%), Positives = 16/51 (31%)

Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS 76
                 G+ + +    +        I+ +   +    G+ +   +N+  +
Sbjct: 35 HGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSA 85

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 94.8 bits (235), Expect = 1e-21
 Identities = 38/239 (15%), Positives = 66/239 (27%), Gaps = 33/239 (13%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQC------TITGC 319
            +N +   L    S      +P      + I   +        +    C           
Sbjct: 81  VRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQK---LPVAGDGGLVCPYMEFFKNENN 136

Query: 320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS---T 376
             P + W K  + +     H    +     LI+ +V       Y C A      K    T
Sbjct: 137 ELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQYPIT 193

Query: 377 KAELIIMTAPKFNVPPRF----RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG 432
           +    I         P       +T   D G  + +    TG       W  +  VI+  
Sbjct: 194 RVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDED 253

Query: 433 GHFHVE------------TSERHAILTIRDASNVDTA-PYRVVAENDLGMDSAIVKIQI 478
                E             S    +L I +  +     P+   A+N  G+D+A +++  
Sbjct: 254 DPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 90.2 bits (223), Expect = 5e-20
 Identities = 26/194 (13%), Positives = 47/194 (24%), Gaps = 21/194 (10%)

Query: 310 AQFQCTITGCP-KPTISWLK--GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 366
               C +     K TI+W K      ++      I    +   L        D+  Y C 
Sbjct: 23  DVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCV 80

Query: 367 AVNKGGVKSTKAEL-IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFT------GYPKPK 419
             N       K     +   P      +           +  +  P+           PK
Sbjct: 81  VRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK 140

Query: 420 ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS------AI 473
           + WY+D + +           +R   L + + +      Y   A                
Sbjct: 141 LQWYKDCKPLLLDNIHFSGVKDR---LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 197

Query: 474 VKIQISDRPDPPQF 487
                 ++P  P  
Sbjct: 198 FITLEENKPTRPVI 211

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 1/87 (1%)

Query: 403 GENVVVKIPFTGYP-KPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
            E  V   P      K  ITWY+D+              +    L    A   D+  Y  
Sbjct: 20  NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 79

Query: 462 VAENDLGMDSAIVKIQISDRPDPPQFP 488
           V  N        +  +  +      + 
Sbjct: 80  VVRNSSYCLRIKISAKFVENEPNLCYN 106

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 89.1 bits (221), Expect = 2e-21
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 2/109 (1%)

Query: 182 KAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV 241
           +A++   +PSPP I       G    LS     DDGG+ I  Y +       +       
Sbjct: 1   EAEASMREPSPPSIHG-QPSSGKSFKLSI-TKQDDGGAPILEYIVKYRSKDKEDQWLEKK 58

Query: 242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
                  I + +L     YE ++ A N  G S P+    S+  K  +  
Sbjct: 59  VQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIK 107

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 87.2 bits (216), Expect = 6e-21
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT--RFT 537
             P PP     +     S  L       DGG+ I  YIV+ R                  
Sbjct: 7   REPSPPSIH-GQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD 64

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            + +  L     YE ++ A N  G S+P+     +  
Sbjct: 65  HIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPP 101

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 84.5 bits (209), Expect = 5e-20
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW-ICISTTCHDTT 147
           P PP   +     +  +  L       DGG  +  Y+V+ R        +      +   
Sbjct: 9   PSPPS--IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDH 65

Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
            I++ L     Y   + A N  G   P      +  K  
Sbjct: 66  IILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPN 104

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 93.6 bits (232), Expect = 2e-21
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 20/217 (9%)

Query: 277 SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS 336
           ++S  V ++DP      ++ +        ++ +A  +C +T       S ++   +  P+
Sbjct: 81  TSSIYVFVRDP-----AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPT 135

Query: 337 ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFR 395
               +       T I N           C A   G  + S K  L +  A K    P   
Sbjct: 136 DLTFVPNPKAGIT-IKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKA--IPVVS 192

Query: 396 DTA---YFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETS-------ERHA 444
                    KG+   V              W + N   +        +        ER  
Sbjct: 193 VPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQE 252

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
            LTI  A   D+  +   A N  G  +    +++ ++
Sbjct: 253 TLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 72.5 bits (177), Expect = 3e-14
 Identities = 22/207 (10%), Positives = 48/207 (23%), Gaps = 21/207 (10%)

Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 346
           P     P I                  C         + W   +         +   E  
Sbjct: 7   PGEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYF-------NEMVENK 55

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV 406
               I           Y C   N      +   + +    K  +        +  +  + 
Sbjct: 56  KNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGL---PLFGKEDSDA 109

Query: 407 VVKIPFTGYPKPKITWYR-DNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
           +V+ P T     + +    D + + +   F    + +  I              R  A+ 
Sbjct: 110 LVRCPLTDPQVSQYSLIECDGKSLPTDLTFVP--NPKAGITIKNVKRAYHRLCVRCAAQR 167

Query: 466 DLG-MDSAIVKIQISDRPDPPQFPTVE 491
           D   + S    +++ +        +V 
Sbjct: 168 DGTWLHSDKFTLKVREAIKAIPVVSVP 194

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 91.2 bits (226), Expect = 3e-21
 Identities = 24/185 (12%), Positives = 48/185 (25%), Gaps = 24/185 (12%)

Query: 310 AQFQCTITGCPKPTISWLKGSREITP-----------------SARHHIFAEGDTYTLII 352
             +   ++  P+  +SW K                             I    +T+ L++
Sbjct: 12  TSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVV 71

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF 412
            +        Y+CR        + +  L ++     +V         F     + V    
Sbjct: 72  TAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS---QFPDFSVLTVTCTV 128

Query: 413 TGYPKPKITWYRDNEVIES----GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
             +P P + W     V  +     G    E     ++            P   V +ND  
Sbjct: 129 NAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188

Query: 469 MDSAI 473
               +
Sbjct: 189 EAHGV 193

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 11/84 (13%), Positives = 19/84 (22%), Gaps = 4/84 (4%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT----PSARHHIFAEGDTY 348
             + V    +           CT+   P P + WL            +       +G   
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164

Query: 349 TLIINSVYGVDADEYVCRAVNKGG 372
             +  S+         C   N   
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKE 188

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 93.7 bits (232), Expect = 5e-21
 Identities = 27/230 (11%), Positives = 50/230 (21%), Gaps = 27/230 (11%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPTI 324
              + G  +     + ++       K P  I           +     C I        I
Sbjct: 109 VTTKNGDCVQGIVRSHIR-------KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNI 161

Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 384
           +W K ++E+      +  +      LII++    D+  Y C              +    
Sbjct: 162 TWYKNNQELIIDGTKYSQSGQ---NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCK 218

Query: 385 APKFNVPPRFRDTAYFDK------GENVVVKIPFTGYPKPK----ITWYRDNEVIESGGH 434
                     R     D       GE   +               I W   +  I     
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF 278

Query: 435 FHVETSERH-----AILTIRDASNVDT-APYRVVAENDLGMDSAIVKIQI 478
                         A L   + +       Y     N     +    + +
Sbjct: 279 GVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 77.2 bits (189), Expect = 1e-15
 Identities = 30/212 (14%), Positives = 52/212 (24%), Gaps = 23/212 (10%)

Query: 295 IIVPLRNANAIQNHNAQFQCTITGCPK---------PTISWLKGSREITPSARHHIFAEG 345
           +     N  A        +C                  ++W K  +   P  R       
Sbjct: 32  MFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK---- 87

Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGE 404
           +    I N         Y+C    K G          I   P                  
Sbjct: 88  NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETY---ELGTHDKY 144

Query: 405 NVVVKIPFT-GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 463
            + +            ITWY++N+ +   G  + ++ +    L I +    D+  Y    
Sbjct: 145 GIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN---LIIHNPELEDSGRYDCYV 201

Query: 464 ENDLG--MDSAIVKIQISDRPDPPQFPTVEDI 493
             D     +  +V         P Q    + I
Sbjct: 202 HYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI 233

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 20/128 (15%), Positives = 31/128 (24%), Gaps = 12/128 (9%)

Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-- 322
           Y        +  S    + +      +   I+ P    N      A   CT         
Sbjct: 203 YDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP--KINVTIGEPANITCTAVSTSLLVD 260

Query: 323 --TISWLKGSREITPSARHHIFAEGD-----TYTLIINSVYGVDA-DEYVCRAVNKGGVK 374
              I W   S  I                    TL   +V      + Y CR  N    K
Sbjct: 261 DVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK 320

Query: 375 STKAELII 382
           +    +++
Sbjct: 321 TLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 44.0 bits (103), Expect = 7e-05
 Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 4/87 (4%)

Query: 1   MPNALYIPEGDNTKVK-IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR 59
               L   +     +            ++  KN + +  D   K++     +II      
Sbjct: 134 ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT-KYSQSGQNLII--HNPE 190

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINIT 86
            ED+G Y   +      +     ++  
Sbjct: 191 LEDSGRYDCYVHYDDVRIKNDIVVSRC 217

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 87.9 bits (218), Expect = 5e-21
 Identities = 26/111 (23%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-ARHHIFAEG 345
             ++  P I     N     +      C  TG P PTI W K    ++   +R      G
Sbjct: 3   SGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG 62

Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD 396
               L I      D   Y C A    G  +  A + +        PPR  D
Sbjct: 63  ---VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIE-SGGHFHVETSERH 443
            P     P  +  A        V+    TG P P I W +D  ++           +   
Sbjct: 8   PPVIRQGPVNQTVA---VDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN--- 61

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
            +L IR A   DT  Y  +A    G  +    I++ +   P Q P
Sbjct: 62  GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPP 106

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 30  TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
            K+G +V + D  +   L++  ++ I+  +  D G YT   S  SG  + +  I +    
Sbjct: 43  RKDGVLVSTQDS-RIKQLEN-GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG 100

Query: 90  GPPIGPLDVS 99
            P   P    
Sbjct: 101 VPVQPPRPTD 110

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 87.5 bits (217), Expect = 7e-21
 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 180 PIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239
                S    PS P   V   V   FV LSW  P +  G+ IQ + +     G +  + +
Sbjct: 8   KPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGN-IQTFTVFFSREGDNRERAL 66

Query: 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           N       Q+ + NL     Y FRV A NE G    S   
Sbjct: 67  NTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPI 106

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 86.3 bits (214), Expect = 2e-20
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 3/107 (2%)

Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI 529
                    S  P  P+      +    + L WR P  +   NI  + V       +   
Sbjct: 6   SGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPA-EAKGNIQTFTVFFSREGDNRER 64

Query: 530 RVGNTRF--TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            +  T+     + +  L P   Y FRV A N +G  + S    + T 
Sbjct: 65  ALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQ 111

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 82.1 bits (203), Expect = 5e-19
 Identities = 29/123 (23%), Positives = 42/123 (34%), Gaps = 6/123 (4%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           SSGS       + + LP  P   +    ++     L W PP    G  +  + V      
Sbjct: 2   SSGSSGKPAIPSSSVLPSAPRD-VVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREG 59

Query: 133 MPHWICISTT-CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
                 ++TT        V  L     Y F V+A NE G G   +   PIK  +  +   
Sbjct: 60  DNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQ---PIKVATQPESGP 116

Query: 192 PPG 194
             G
Sbjct: 117 SSG 119

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 86.5 bits (214), Expect = 2e-20
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 15/129 (11%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           SSGS      ++    P PP    ++   +  T T+HW          ++ Y ++    +
Sbjct: 2   SSGSSGEG--LDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFT 56

Query: 133 MP----------HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
                           I        + V GL  G  Y+F V A+N+ G            
Sbjct: 57  GQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTN 116

Query: 183 AKSPYDKPS 191
           ++     PS
Sbjct: 117 SQPFKSGPS 125

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 86.5 bits (214), Expect = 2e-20
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 470 DSAIVKIQISDRPDPPQF-PTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS- 527
            S+   +     P+PP     +    HD++ + W +       +I++Y ++       + 
Sbjct: 4   GSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQAN 60

Query: 528 ----------WIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                     W+ V N +     + GL  G +Y F V A N  G  +   T     +
Sbjct: 61  FISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNS 117

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 66.5 bits (162), Expect = 2e-13
 Identities = 19/118 (16%), Positives = 30/118 (25%), Gaps = 17/118 (14%)

Query: 182 KAKSPYDKPSPP-GIPVVTQVGGDFVNLSWDKPLDDGGSRIQGY-----------WIDKH 229
           +       P+PP     +     D + + W          I  Y                
Sbjct: 8   EGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISL 64

Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
               D+W  V       +   +  L  G +Y F V A N+AG             +  
Sbjct: 65  YNSVDSWMIVPN--IKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPF 120

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 85.1 bits (211), Expect = 2e-20
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 346
           P            R+        A F+          + W +G  +I+ S ++ +  EG 
Sbjct: 3   PGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGT 61

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            +TL +  V   D   Y   A    G    K +L +
Sbjct: 62  RHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
             F+  PR   +     G   V +         K+ W R    I +   + + T      
Sbjct: 9   SAFSKKPR---SVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHT 64

Query: 446 LTIRDASNVDTAPYRVVAEND 466
           LT+R+    D   Y V+A + 
Sbjct: 65  LTVREVGPADQGSYAVIAGSS 85

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 24 PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83
           ++V   + G  + + +++          + ++E+   D G Y V     +GS    F +
Sbjct: 36 GVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAV----IAGSSKVKFDL 91

Query: 84 NIT 86
           + 
Sbjct: 92 KVI 94

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 88.6 bits (219), Expect = 3e-20
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 34/214 (15%)

Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPT----ISWLKGSREITPSARHHIFAEGDTY- 348
            I  P +     +   A   C  T  P+      I WL    +     +  I   GD   
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 349 -----------------------TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
                                  ++ + ++   D   Y C+     GV + K  L ++  
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121

Query: 386 PKFNVPPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
           P      R       + G +  +K  P  G    +  W + ++       +  E +    
Sbjct: 122 PSG---TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT--SP 176

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           ++++++AS+  +  Y    +N +G D  ++++ +
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 63.6 bits (154), Expect = 1e-11
 Identities = 23/187 (12%), Positives = 48/187 (25%), Gaps = 20/187 (10%)

Query: 207 NLSWDKPLDDGGSRIQGYWI-----DKHEVGSDAWQRVNVAICAPSQ----INIPNLIEG 257
           ++ W     D     Q   +            D   RV+            IN+ NL   
Sbjct: 35  DIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLS 94

Query: 258 RQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT 317
               ++   +   G    ++    + +        P       + +    ++ + +C   
Sbjct: 95  DIGTYQCKVKKAPG---VANKKFLLTVLVK-----PSGTRCFVDGSEEIGNDFKLKCEPK 146

Query: 318 -GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST 376
            G       W K S   T               + + +     +  Y C   N+ G    
Sbjct: 147 EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--ISVKNASSEYSGTYSCTVQNRVGSDQC 204

Query: 377 KAELIIM 383
              L ++
Sbjct: 205 MLRLDVV 211

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 9/111 (8%)

Query: 8   PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT 67
            +  +  + ++              GRV  + +     V      I +  ++  D G Y 
Sbjct: 45  NQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSND----VKSGDASINVTNLQLSDIGTYQ 100

Query: 68  VNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLH-----WNPP 113
             +  + G  +  F + +   P      +D SE   +   L       + P
Sbjct: 101 CKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLP 151

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 85.9 bits (213), Expect = 3e-20
 Identities = 31/131 (23%), Positives = 42/131 (32%), Gaps = 6/131 (4%)

Query: 163 VMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ 222
             +    G G P     PI  ++  D P PP   +  +V    V L W  P    G  I 
Sbjct: 3   SGSSGRIGDGSPSH--PPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IIL 59

Query: 223 GYWIDKHEVGSDA-WQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
            Y I      + A    V V   +  Q     L     Y FR+ AQ   G    + A   
Sbjct: 60  AYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVV 119

Query: 282 V--QIKDPMAA 290
              +   P + 
Sbjct: 120 TTEKRSGPSSG 130

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 8/121 (6%)

Query: 461 VVAENDLGM---DSAIVKIQ-ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNY 516
             +   +G        +  + + D P PP      ++   S+ L+W+ P    G  I  Y
Sbjct: 3   SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAY 61

Query: 517 IVEKREH---PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            +  R +     ++ + V          TGL P   Y FR+ A+   G  + +    + T
Sbjct: 62  QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121

Query: 574 T 574
            
Sbjct: 122 E 122

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 68.2 bits (167), Expect = 5e-14
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI--SMPHWICISTTCH 144
            +PGPP+G +   E+   +  L W PP    G+ +  Y +  R    +            
Sbjct: 26  DVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNGI-ILAYQITHRLNTTTANTATVEVLAPS 83

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
              +   GL     YLF + A    G G   E +         +K S P
Sbjct: 84  ARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT-----EKRSGP 127

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 90.1 bits (223), Expect = 3e-20
 Identities = 43/301 (14%), Positives = 75/301 (24%), Gaps = 41/301 (13%)

Query: 191 SPPGIPVVTQVGGDFV-------NLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI 243
           +PPG  +V  V   FV        + W++         Q     +    S          
Sbjct: 4   TPPGPELVLNVSSTFVLTCSGSAPVVWERM---SQEPPQEMAKAQDGTFS---------- 50

Query: 244 CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNAN 303
              S + + NL      E+     +  GL         + + DP     P          
Sbjct: 51  ---SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEE-LFIF 106

Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
             +       C +T  P+  ++  +   ++              Y          +   Y
Sbjct: 107 LTEITEITIPCRVTD-PQLVVTLHEKKGDVALPV---------PYDHQRGFSGIFEDRSY 156

Query: 364 VCRAVNKGG-VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITW 422
           +C+       V S    +  +     NV      T    +GEN+ +     G       W
Sbjct: 157 ICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVV-RQGENITLMCIVIGNEVVNFEW 215

Query: 423 YRDNEVIESG-----GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477
               +                     +IL I  A   D+  Y       +        I 
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275

Query: 478 I 478
           I
Sbjct: 276 I 276

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 87.0 bits (215), Expect = 6e-20
 Identities = 27/191 (14%), Positives = 52/191 (27%), Gaps = 23/191 (12%)

Query: 298 PLRNANAIQNHNAQFQCTITGCPKPTIS--WLKGSREITPSARHHIFAEGDTYTLIINSV 355
            +              C++           WLKG   +                      
Sbjct: 4   TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED-------ALPGQKTEFKVD 56

Query: 356 YGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY 415
                 EY C  + +    +    + +   P+               GE  ++       
Sbjct: 57  SDDQWGEYSCVFLPEPMGTAN---IQLHGPPRVKAVKSSEHINE---GETAMLVCKSESV 110

Query: 416 PKP-KITWYRDNEVIE------SGGHFHVETSERHAILTIRDAS-NVDTAPYRVVAENDL 467
           P      WY+  +  +      S   F V +S+  + L I + +   D   YR    +  
Sbjct: 111 PPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSK 170

Query: 468 GMDSAIVKIQI 478
           G D AI+ +++
Sbjct: 171 GSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 18/141 (12%)

Query: 255 IEGRQYEFRVYAQNEAGL-----SLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHN 309
           + G++ EF+V + ++ G            + ++Q+  P     P +     + +  +   
Sbjct: 46  LPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGP-----PRVKAVKSSEHINEGET 100

Query: 310 AQFQCTITGCPKPT-ISWLKGSREITP------SARHHIFAEGDTYTLIINSV-YGVDAD 361
           A   C     P  T  +W K +            +R  + +      L I ++    D  
Sbjct: 101 AMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG 160

Query: 362 EYVCRAVNKGGVKSTKAELII 382
           +Y C   +  G       L +
Sbjct: 161 QYRCNGTSSKGSDQAIITLRV 181

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 83.5 bits (207), Expect = 9e-20
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 288 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS----ARHHIFA 343
            ++    I+ PL +         +    ++      + W+K   E+T      AR+    
Sbjct: 4   GSSGPVLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKK 62

Query: 344 EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           +G  + LI + V   D   Y             +AELI+
Sbjct: 63  DGKRHILIFSDVVQEDRGRYQVITNG----GQCEAELIV 97

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 10/88 (11%), Positives = 22/88 (25%), Gaps = 14/88 (15%)

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFT---GYPKPKITWYRDNEVIESG----GHFHVE 438
                P   +       G+ V               ++ W ++   +         +  +
Sbjct: 9   VLIVTPLEDQQVF---VGDRVE----MAVEVSEEGAQVMWMKNGVELTREDSFKARYRFK 61

Query: 439 TSERHAILTIRDASNVDTAPYRVVAEND 466
              +  IL   D    D   Y+V+    
Sbjct: 62  KDGKRHILIFSDVVQEDRGRYQVITNGG 89

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT--PSARHHIFAEGD 346
            +    +   L +  A      + +C ++      + W K   EI   P +R+ I  EG 
Sbjct: 4   GSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGK 62

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            + LII      DA EY            + A+L +
Sbjct: 63  KHILIIEGATKADAAEYSVMTTG----GQSSAKLSV 94

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 8/102 (7%)

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE-- 441
           +           DT     GE V ++   +      + W+++ E I  G           
Sbjct: 6   SGIMVTKQLE--DTT-AYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG 61

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD 483
           +  IL I  A+  D A Y V+        SA + + +   P 
Sbjct: 62  KKHILIIEGATKADAAEYSVMTTGGQS--SAKLSVDLKSGPS 101

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 7   IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAG 64
              G+  +++   + D    V   KNG  +    + ++ +  +    I+ I+   K DA 
Sbjct: 19  AYCGERVELECEVSEDDA-NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAA 77

Query: 65  DYTVNLSNSSGSVSGTFTINITGLPGPPIG 94
           +Y+V  +    S      +++    GP  G
Sbjct: 78  EYSVMTTGGQSSA----KLSVDLKSGPSSG 103

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 83.3 bits (206), Expect = 1e-19
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 7/104 (6%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY-- 348
                I  L +     +H+     T+ G PKP + W      +  S           +  
Sbjct: 2   HFAPTITFLESP--TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 349 ---TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 389
               L +++   ++  +Y   A N+ G    +     M  P  +
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 82.5 bits (204), Expect = 2e-19
 Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 389 NVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET-----SERH 443
           +  P            +  +     G PKP + W+ +  ++    +   +      +E H
Sbjct: 2   HFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD 483
             L + + ++++   Y ++A+N+ G D   +       P 
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 5/66 (7%)

Query: 30  TKNGRVVQSDDRFKFTVLDD-----YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 84
             NG ++         +        +  + +      + GDYT+   N  G      + +
Sbjct: 36  FYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95

Query: 85  ITGLPG 90
             G PG
Sbjct: 96  FMGWPG 101

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 82.9 bits (205), Expect = 2e-19
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 290 AKAPEIIVPLRNANAIQN----HNAQFQCTITGCPKPTISWLKGSREITPSARHHIF-AE 344
            +AP      +    +      +  +F+C   G P PT+ WLK  +E     R   +   
Sbjct: 2   KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61

Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
              ++LI+ SV   D   Y C   N+ G  +    L ++
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 64.8 bits (158), Expect = 4e-13
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 384 TAPKFNVPPRFRDTAYF-DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH-VETSE 441
            AP +    +     +       V  + P  G P P + W ++ +  +        +   
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           +H  L +      D   Y  V EN+ G  +    + +
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 31 KNGRVVQSDDRFK-FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
          KNG+  + + R   + V + +  + ++ +   D G+YT  + N  GS++ T+ +++
Sbjct: 44 KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 290 AKAPEIIVPLRNANAIQ-NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
           +        L  A  +      +F   +   PK  + W K  +EI PS ++    +G   
Sbjct: 5   SSGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
            L IN+    D  EY   A    G +    EL + + P
Sbjct: 64  ILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGP 97

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 391 PPRF----RDTAYFDKGENVV--VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
              F          DKG  V   V++     PK ++ WY++ + I     +  E      
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVEL---ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63

Query: 445 ILTIRDASNVDTAPYRVVAEND 466
           IL I +    D + Y V A ++
Sbjct: 64  ILFINNCQMTDDSEYYVTAGDE 85

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 1  MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
          +  A  + +G   +  +  A  +  EV   KNG+ ++   ++ F       I+FI   + 
Sbjct: 14 LDPAYQVDKGGRVRFVVELADPKL-EVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQM 72

Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITGLP 89
           D  +Y V    ++G    +  + +   P
Sbjct: 73 TDDSEYYV----TAGDEKCSTELFVRSGP 97

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
           G          ++ +     P P             + ++W+ P+   G  IQ Y +   
Sbjct: 1   GSSGSSG---RVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYM 56

Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
           E G+D  Q V+V+        I  L +  +Y FRV A N+ G  + +       + D 
Sbjct: 57  EKGTDKEQDVDVSS---HSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDS 111

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 76.2 bits (188), Expect = 5e-17
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
            LPGP    L     +  + T+ W  P    G ++ +Y +   +        +  +    
Sbjct: 16  QLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVDVSS--H 71

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
           ++ + GL +  EY F V+A N++G G        +  ++  D     G
Sbjct: 72  SYTINGLKKYTEYSFRVVAYNKHGPGVSTP---DVAVRTLSDSGPSSG 116

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 468 GMDSAIVKIQIS-DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
              S  V+ Q     P P            S+ + W  P+   G  I NY +   E    
Sbjct: 3   SGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTD 61

Query: 527 SWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
               V +    +  I GL    +Y FRV A N +G    +    + T
Sbjct: 62  KEQDV-DVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 107

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 81.7 bits (202), Expect = 5e-19
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
            +     R   A    +A   C +    +  ++W K  ++++ S++  + A G T  L++
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELII 382
                 +A EY C A    G +     L +
Sbjct: 71  QQAGQAEAGEYSCEA----GGQQLSFRLQV 96

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 55.5 bits (134), Expect = 7e-10
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 9/106 (8%)

Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES 431
           G   +  +++     K    P  R+    + G +  +        + ++TWY+D + + S
Sbjct: 1   GSSGSSGKVVF---AKE--QPAHREVQ-AEAGASATLSCEVAQ-AQTEVTWYKDGKKLSS 53

Query: 432 GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477
                VE       L ++ A   +   Y   A       S  +++ 
Sbjct: 54  SSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQL--SFRLQVA 97

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 7  IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 66
             G +  +    A  Q  EV+  K+G+ + S  + +   +     + +++  + +AG+Y
Sbjct: 23 AEAGASATLSCEVAQAQT-EVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEY 81

Query: 67 TVNLSNSSGSVSGTFTINITG 87
          +      +G    +F + + G
Sbjct: 82 SCE----AGGQQLSFRLQVAG 98

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 81.7 bits (202), Expect = 6e-19
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 7/107 (6%)

Query: 289 AAKAPEIIVP--LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 346
              +  I+ P       A++       C +   P   + W K   E+  S    +  E  
Sbjct: 8   TDVSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDGEEVVESPALLLQKEDT 66

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
              L++ +V   D+ EY+C        +S    + +   P   +   
Sbjct: 67  VRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPPVRIIYSG 109

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
              + V P  +      + E VV+       P  ++ W +D E +       ++  +   
Sbjct: 10  VSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDGEEVVESPALLLQKEDTVR 68

Query: 445 ILTIRDASNVDTAPYRVVAEND 466
            L +      D+  Y    +++
Sbjct: 69  RLVLPAVQLEDSGEYLCEIDDE 90

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 20  AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
                 EV  TK+G  V           D    + +  ++ ED+G+Y   +       S 
Sbjct: 37  LCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESA 92

Query: 80  TFTINITGLPGPPIGPLDVS 99
           +FT+ +T  P   I     S
Sbjct: 93  SFTVTVTEPPVRIIYSGPSS 112

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 86.7 bits (214), Expect = 8e-19
 Identities = 26/235 (11%), Positives = 54/235 (22%), Gaps = 18/235 (7%)

Query: 259 QYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI-T 317
            Y            +    +  ++ +              LR      +      CT   
Sbjct: 106 VYICEF----ATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSAN 161

Query: 318 GCPKPTISWLKGSREITPSARHHIFAEGDTY--TLIINSVYGVDADEYVCRAVNKGGVKS 375
           G P   +SW    +               T      +            C          
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221

Query: 376 TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGH 434
               L +   P+  +     D  ++ +  +V +       P   +  W   N  +  G  
Sbjct: 222 ESLTLNVQYEPEVTIEG--FDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-- 277

Query: 435 FHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPT 489
                ++   +      +      Y   A N +G  S  V++ I+   +      
Sbjct: 278 ---VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT---EAAALEH 326

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 62.5 bits (151), Expect = 9e-11
 Identities = 20/129 (15%), Positives = 37/129 (28%), Gaps = 15/129 (11%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV-PLRNANAIQNHNAQFQCTITGCPKPT- 323
                        S ++ ++       PE+ +        +Q  + +  C     P  T 
Sbjct: 213 VNYHMD---RFKESLTLNVQYE-----PEVTIEGFDGNWYLQRMDVKLTCKADANPPATE 264

Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
             W   +  +         A+  T       +    A  Y+C A N  G +S + E+ I 
Sbjct: 265 YHWTTLNGSLPKGVE----AQNRT-LFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319

Query: 384 TAPKFNVPP 392
            A       
Sbjct: 320 EAAALEHHH 328

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 80.9 bits (200), Expect = 9e-19
 Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEG 345
             ++  P I+    N     +  A  +C  TG P P ISWLK          R  I  +G
Sbjct: 3   SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62

Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 385
              TL I ++   D   Y C A +  G  S  A L +  +
Sbjct: 63  ---TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES-GGHFHVETSERH 443
            P     P              ++K   TG P P I+W ++            ++     
Sbjct: 8   PPIILQGPA---NQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ--- 61

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
             L I++    DT  Y  VA +  G  S    + +++
Sbjct: 62  GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 26 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
           +S  K G      D  + T+ +   +  IK +R  D G YT   ++SSG  S +  +++
Sbjct: 39 VISWLKEGFTFPGRDP-RATIQEQGTL-QIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96

Query: 86 TG 87
          T 
Sbjct: 97 TE 98

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 85.9 bits (212), Expect = 1e-18
 Identities = 41/303 (13%), Positives = 84/303 (27%), Gaps = 38/303 (12%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           +     +  V+Q+       +W +  + G   +           S   + V   + A  +
Sbjct: 25  QVPNMEVTHVSQL-------TWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELR 77

Query: 249 ---INIPNLI---EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNA 302
              + +  L    EG  Y        +       S    +++        P+    ++  
Sbjct: 78  NASLRMFGLRVEDEGN-YTCLFVTFPQG----SRSVDIWLRVLAK-----PQNTAEVQKV 127

Query: 303 NAIQNHNAQFQCT-ITGCPKPTISWLKGSREITPSARHHIFAEGD---TYTLIINSVYGV 358
                     +C    G P   I+W      +  +++   F  G    T   I+     V
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQV 187

Query: 359 DADEYVCRAVNKGGVKS--TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYP 416
           D     C+  ++   K       L +   P+ ++     D  ++       +       P
Sbjct: 188 DGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGY--DNNWYLGQNEATLTCDARSNP 245

Query: 417 KP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK 475
           +P    W      +            + A L IR               N LG   A + 
Sbjct: 246 EPTGYNWSTTMGPLPPF------AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELT 299

Query: 476 IQI 478
           +Q+
Sbjct: 300 VQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 79.0 bits (194), Expect = 3e-16
 Identities = 36/306 (11%), Positives = 77/306 (25%), Gaps = 41/306 (13%)

Query: 295 IIVPLRNANAIQNHNAQFQCTITGCPKPT-----ISWLK-------------GSREITPS 336
           ++            +    C +            ++W +                  + S
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 337 ARHHIF-----AEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNV 390
            R         AE    +L +  +   D   Y C  V    G +S    L ++  P+   
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122

Query: 391 PPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSER---HAIL 446
             +             + + +   G P  +ITW+ D   + +        S      ++ 
Sbjct: 123 EVQ---KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLW 179

Query: 447 TIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS----DRPDPPQFPTVEDIGHDSLALVW 502
            +  +S VD        E++      ++ + ++           +     +G +   L  
Sbjct: 180 ILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTC 239

Query: 503 RAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR 562
            A         T Y       P+  +      +     I  +             N  G 
Sbjct: 240 DA---RSNPEPTGYNWSTTMGPLPPFAVAQGAQLL---IRPVDKPINTTLICNVTNALGA 293

Query: 563 SDPSTT 568
                T
Sbjct: 294 RQAELT 299

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 13/107 (12%), Positives = 29/107 (27%), Gaps = 9/107 (8%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGH---------FHVETSERHAILTIRDASN 453
           G +V ++  F      ++   R +                    +     A+  I     
Sbjct: 17  GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76

Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLAL 500
            D+  YR +       D   + +++           +E  G   + L
Sbjct: 77  RDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQL 123

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 80.4 bits (198), Expect = 1e-18
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
             S     SPP   +V       V L WD P +    R+ GY ++    GS  W+ ++ A
Sbjct: 1   GSSGSSGLSPP-RGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEG-RQGSQGWEVLDPA 57

Query: 243 ICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
           +     ++ +P LI+   YEFR+ A   + +S PS+ +N
Sbjct: 58  VAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTAN 96

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 73.8 bits (181), Expect = 3e-16
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 89  PGPPIGP--LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT-CHD 145
               + P    V+  T     LHW+PP      ++  YV+E R  S    +        +
Sbjct: 4   GSSGLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTE 62

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
           T  +V GL +   Y F ++A   + +  P    N   +       S P
Sbjct: 63  TELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS-----GLSGP 105

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 73.8 bits (181), Expect = 3e-16
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---NTR 535
           S    PP+   V       + L W  P       +  Y++E R+     W  +       
Sbjct: 5   SSGLSPPR-GLVAVRTPRGVLLHWDPPE-LVPKRLDGYVLEGRQ-GSQGWEVLDPAVAGT 61

Query: 536 FTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPIS 587
            T + + GL     YEFR+ A      SDPS T+++ T+      G+  P S
Sbjct: 62  ETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS------GLSGPSS 107

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 86.0 bits (212), Expect = 2e-18
 Identities = 19/204 (9%), Positives = 52/204 (25%), Gaps = 38/204 (18%)

Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD----------------- 346
             +    +  CT +        W   ++      +     +G                  
Sbjct: 6   GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV 406
            + LII ++   D+D Y+C   +    +  + +L++                +  +G+++
Sbjct: 66  NFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLT---ANS----DTHLLQGQSL 114

Query: 407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
            + +       P +           GG            L++      D+  +      +
Sbjct: 115 TLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQN 164

Query: 467 LGMDSAIVKIQISDRPDPPQFPTV 490
                  + I +            
Sbjct: 165 QKKVEFKIDIVVLAFQKASSIVYK 188

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 74.8 bits (183), Expect = 1e-14
 Identities = 28/223 (12%), Positives = 60/223 (26%), Gaps = 31/223 (13%)

Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
           + + +Q  +            P++       +     +          TL ++ +   D+
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDS 154

Query: 361 DEYVCRAVNKGGVKSTKAELIIMTAPK--------------FNVPPRFRDTAYFDKGENV 406
             + C  +        K +++++   K              F+ P  F        GE  
Sbjct: 155 GTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELW 214

Query: 407 VVKIPFTGYPKPKITWYRDNE---VIESGGHFHVETSER---HAILTIRDASNVDTAPYR 460
                     K  IT+   N+   V        ++  ++   H  L         +    
Sbjct: 215 WQAER-ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT 273

Query: 461 VVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWR 503
           +  E   G     V + +       +  T E  G  S  L+  
Sbjct: 274 LALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLS 316

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 19/220 (8%), Positives = 42/220 (19%), Gaps = 49/220 (22%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQ-----------C 314
                           + I      KA  I+          +    F             
Sbjct: 161 VLQNQK-----KVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW 215

Query: 315 TITGCPKP----TISWLKGSREITPSARHHIFAEGDTY----TLIINSVYGVDADEYVCR 366
                       T         +    +      G       TL         +      
Sbjct: 216 QAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLA 275

Query: 367 AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 426
              K G    +  L++M A +                 N+  ++     PK  ++   +N
Sbjct: 276 LEAKTGKLHQEVNLVVMRATQLQK--------------NLTCEVWGPTSPKLMLSLKLEN 321

Query: 427 EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
           +  +                      N +   ++ +  + 
Sbjct: 322 KEAKVSKR-----------EKAVWVLNPEAGMWQCLLSDS 350

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 36/339 (10%), Positives = 72/339 (21%), Gaps = 70/339 (20%)

Query: 55  IKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP- 113
           IK ++ ED+  Y   + +    V     + + GL       L   +    T         
Sbjct: 71  IKNLKIEDSDTYICEVEDQKEEV----QLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 126

Query: 114 -----KYDGGLKVTHYVVERRDISMPH---WICISTTCHDTTFIVQGLTEGQEYLFHVMA 165
                   G        +    + +     W C                  Q+ +   + 
Sbjct: 127 SVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ-------------NQKKVEFKID 173

Query: 166 VNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYW 225
           +              +  K          +    +       L W             + 
Sbjct: 174 IVVLAFQKASS---IVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFD 230

Query: 226 IDKHEV---GSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVY---AQNEAGLSLPSSAS 279
           +   EV         ++ +    P  + +P     +           + + G  L    +
Sbjct: 231 LKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQ-ALPQYAGSGNLTLALEAKTG-KLHQEVN 288

Query: 280 NSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP--TISWLKGSREITPSA 337
             V                               C + G   P   +S    ++E   S 
Sbjct: 289 LVVM--------------------RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK 328

Query: 338 RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST 376
           R                V   +A  + C   + G V   
Sbjct: 329 REKAV-----------WVLNPEAGMWQCLLSDSGQVLLE 356

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 13/117 (11%), Positives = 31/117 (26%), Gaps = 5/117 (4%)

Query: 28  SLTKNGRVVQSDDR-FKFTVLDDY---IIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83
            L      V+   +  K  +       + +     +   +G+ T+ L   +G +     +
Sbjct: 230 DLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289

Query: 84  NITGLPGPPIG-PLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICI 139
            +            +V   T     L       +  +      V   +     W C+
Sbjct: 290 VVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCL 346

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 79.9 bits (197), Expect = 3e-18
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 7/105 (6%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT---- 347
            P ++                +  + G P PT+ WL   + +  S   H+    +     
Sbjct: 8   PPRVVSLE---EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
             L+ N     +   Y   A N  G  +       +  P      
Sbjct: 65  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEV 109

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 79.9 bits (197), Expect = 3e-18
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 389 NVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE----RHA 444
             PPR       +      ++    G P P + W  + + +      HVE  +       
Sbjct: 6   YYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
            L     ++ +   Y ++A+N LG  +  +       P P    
Sbjct: 66  CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEV 109

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 31  KNGRVVQSDDRFKFTVLDDYIIIF----IKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86
            NG+ ++           +  I        +    + G+YT+   N  G+ + T   +  
Sbjct: 41  HNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 100

Query: 87  GLPGP-----PIGPLDVS 99
             P P     P  P+ V+
Sbjct: 101 KEPFPVDEVSPTPPITVT 118

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 86.8 bits (214), Expect = 3e-18
 Identities = 60/494 (12%), Positives = 125/494 (25%), Gaps = 69/494 (13%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPM----EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKE 57
           P+ + +P G +  V    + DQPM    E  L K   ++  ++R  + + +         
Sbjct: 6   PSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSN--------- 56

Query: 58  IRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKH-----TCTLHWNP 112
              ++        +   G  +    + +   P         S           C +    
Sbjct: 57  --VQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGA 114

Query: 113 PKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM- 171
           P+ +  L V       R               + T  V    +     F      +    
Sbjct: 115 PRAN--LTVVLL----RGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ 168

Query: 172 -GPPLEGINPIKAKSPYDKPSPPGIPVVTQV--GGDFVNLSWDKPLDDGGSRIQGYWIDK 228
                E  +       +  P+ P   V  +V        +          S  Q +    
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228

Query: 229 HEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPM 288
            +  +      N +  A + +++    EG                       +V I    
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEG-TQRLTCAVILGNQ---SQETLQTVTIYSF- 283

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
               P   V L      +      +C      K T++ +                 G   
Sbjct: 284 ----PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP------------LGPRA 327

Query: 349 TLIINSVYGVDADEYVCRAVNKGG----VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGE 404
            L++ +    +   + C A  +       K+   EL ++  P+ +      +   + +  
Sbjct: 328 QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWT-WPENS 386

Query: 405 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAE 464
                    G P P++   +D       G     T +                 Y   A 
Sbjct: 387 QQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD-------------LEGTYLCRAR 433

Query: 465 NDLGMDSAIVKIQI 478
           +  G  +  V + +
Sbjct: 434 STQGEVTREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 69.1 bits (168), Expect = 1e-12
 Identities = 30/308 (9%), Positives = 80/308 (25%), Gaps = 26/308 (8%)

Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 353
           +  V        +  +    C+ +      +         TP  +  +   G+   +   
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIE------TPLPKKELLLPGNNRKVYEL 54

Query: 354 SVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-IPF 412
           S    +  + +C +    G  + K  L +   P+          ++   G+N+ ++    
Sbjct: 55  SNVQ-EDSQPMCYSNCPDGQSTAKTFLTVYWTPER--VELAPLPSWQPVGKNLTLRCQVE 111

Query: 413 TGYPKP--KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD 470
            G P+    +   R  + ++                T+    +   A +    E DL   
Sbjct: 112 GGAPRANLTVVLLRGEKELKRE---PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ 168

Query: 471 --------SAIVKIQISDRPDPPQFPTVEDIGH--DSLALVWRAPIWDGGSNITNYIVEK 520
                   SA  ++Q    P  P       +        +V         S    ++   
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228

Query: 521 REHPMSSWIRVGNTRFTTMAITGL-SPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELL 579
            +    +     ++     +++                      +   T  + +     +
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288

Query: 580 SGMEAPIS 587
              +  +S
Sbjct: 289 ILTKPEVS 296

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 50/378 (13%), Positives = 105/378 (27%), Gaps = 63/378 (16%)

Query: 23  QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS------ 76
             + V L +  + ++ +           +   +   R     +++               
Sbjct: 117 ANLTVVLLRGEKELKREP---AVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173

Query: 77  --VSGTFTINITGLPGPPIGP-----LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR 129
              S  + +    LP  P        L+V       C+L    P  +   +V   + ++R
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSE--AQVHLALGDQR 231

Query: 130 DISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDK 189
                 +   S +       V  +T   E    +      G          ++  + Y  
Sbjct: 232 LNPTVTYGNDSFS---AKASVS-VTAEDEGTQRLTCAVILGNQ----SQETLQTVTIYSF 283

Query: 190 PSPPGIPVVTQVG-GDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           P+P  I    +V  G  V +  +       +++    +    +G  A   +         
Sbjct: 284 PAPNVILTKPEVSEGTEVTVKCEA---HPRAKVTLNGVPAQPLGPRAQLLLKAT------ 334

Query: 249 INIPNLIEGRQYEFRVYAQNE-AGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNAN--AI 305
                   GR +     A  E AG  +  + +  +++        P +       N    
Sbjct: 335 ----PEDNGRSFSCS--ATLEVAGQLIHKNQTRELRVLYG-----PRLDERDCPGNWTWP 383

Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
           +N      C   G P P +  LK      P                  +V       Y+C
Sbjct: 384 ENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------GESVTVTRDLEGTYLC 430

Query: 366 RAVNKGGVKSTKAELIIM 383
           RA +  G  + +  + ++
Sbjct: 431 RARSTQGEVTREVTVNVL 448

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 85.7 bits (211), Expect = 3e-18
 Identities = 40/255 (15%), Positives = 75/255 (29%), Gaps = 34/255 (13%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP--LRNANAIQNHNAQFQCTITGCPKPT 323
            +N        +    V  KD       ++ V          +              KPT
Sbjct: 98  LRNTTY-CSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPT 156

Query: 324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV----NKGGVKSTKAE 379
           I+W  G  +I     +++  EG    L        +   Y C        +    +    
Sbjct: 157 ITWYMGCYKIQNF--NNVIPEGMN--LSFLIALISNNGNYTCVVTYPENGRTFHLTRTLT 212

Query: 380 LIIMTAPKFNVPPRFRD-----TAYFDKGENV----VVKIPFTGYPKPKITWYRDNEVIE 430
           + ++ +PK  VPP             + GE +     V   F    + ++ W  D +  +
Sbjct: 213 VKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPD 272

Query: 431 SGGHFHVETSERH----------AILTIRDASNVDTA-PYRVVAENDLGMDSAIVKIQIS 479
                                   IL+I+  ++ D    Y   A +  G  +   K++  
Sbjct: 273 DITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ- 331

Query: 480 DRPDPPQFPTVEDIG 494
            +   P++ TVE   
Sbjct: 332 -KVPAPRY-TVELAC 344

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 78.0 bits (191), Expect = 9e-16
 Identities = 32/204 (15%), Positives = 56/204 (27%), Gaps = 23/204 (11%)

Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPS-------ARHHIFAEGDTYTLIINSVY 356
            +  H  +F  +       T+ W    ++             + I  E D   L      
Sbjct: 30  PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV--LWFRPTL 87

Query: 357 GVDADEYVCRAVNKGGVKSTKAEL-IIMTAPKFNVPPRFRDTAYFDKGENVVVKIP---- 411
             D   Y C   N          L ++     FN P +      + +     +  P    
Sbjct: 88  LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDG 147

Query: 412 -FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM- 469
            F    KP ITWY     I++  +   E       L+   A   +   Y  V        
Sbjct: 148 YFPSSVKPTITWYMGCYKIQNFNNVIPEGMN----LSFLIALISNNGNYTCVVTYPENGR 203

Query: 470 ---DSAIVKIQISDRPDPPQFPTV 490
               +  + +++   P     P +
Sbjct: 204 TFHLTRTLTVKVVGSPKNAVPPVI 227

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 83.8 bits (207), Expect = 3e-18
 Identities = 29/197 (14%), Positives = 53/197 (26%), Gaps = 26/197 (13%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLI 351
             I +     +  Q       C +   P   +  W         S            +  
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP----------SYR 51

Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-I 410
           I S    D+ EY C+       +S   +L I                 F +GE + ++  
Sbjct: 52  ITSASVNDSGEYRCQRGL--SGRSDPIQLEIHRGWLLLQVSS----RVFTEGEPLALRCH 105

Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD 470
            +       + +YR+ +  +    F    S     LTI   +      Y           
Sbjct: 106 AWKDKLVYNVLYYRNGKAFK----FFHWNSN----LTILKTNISHNGTYHCSGMGKHRYT 157

Query: 471 SAIVKIQISDRPDPPQF 487
           SA + + + +    P  
Sbjct: 158 SAGISVTVKELFPAPVL 174

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 28/218 (12%), Positives = 55/218 (25%), Gaps = 31/218 (14%)

Query: 269 EAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTISWL 327
           + GLS  S        +  +  +    +         +      +C          + + 
Sbjct: 66  QRGLSGRSDPIQLEIHRGWLLLQVSSRVF-------TEGEPLALRCHAWKDKLVYNVLYY 118

Query: 328 KGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII---MT 384
           +  +                  L I          Y C  + K    S    + +     
Sbjct: 119 RNGKAFKFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFP 170

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYP-KPKITWYRDNEVIESGGHFHVETSERH 443
           AP  N       T+   +G  V +         +P +  Y         G   +      
Sbjct: 171 APVLNASV----TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFY----MGSKTLRGRNTS 222

Query: 444 AILTIRDASNVDTAPYRVVAENDLG---MDSAIVKIQI 478
           +   I  A   D+  Y   A  + G     S  +++Q+
Sbjct: 223 SEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 81.9 bits (202), Expect = 3e-18
 Identities = 18/192 (9%), Positives = 49/192 (25%), Gaps = 38/192 (19%)

Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD----------------- 346
             +    +  CT +        W   ++      +     +G                  
Sbjct: 7   GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV 406
            + LII ++   D+D Y+C   ++   +       +      ++            G+++
Sbjct: 67  NFPLIIKNLKIEDSDTYICEVEDQKE-EVQLLVFGLTANSDTHLLQ----------GQSL 115

Query: 407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
            + +       P +           GG            L++      D+  +      +
Sbjct: 116 TLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQN 165

Query: 467 LGMDSAIVKIQI 478
                  + I +
Sbjct: 166 QKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 60.4 bits (146), Expect = 9e-11
 Identities = 8/87 (9%), Positives = 26/87 (29%), Gaps = 10/87 (11%)

Query: 301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 360
           + + +Q  +            P++       +                TL ++ +   D+
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQLELQDS 155

Query: 361 DEYVCRAVNKGGVKSTKAELIIMTAPK 387
             + C  +        K +++++   K
Sbjct: 156 GTWTCTVLQNQKKVEFKIDIVVLAFQK 182

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 18/108 (16%)

Query: 395 RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET--------------- 439
           +      KG+ V +    +     +  W   N++   G      T               
Sbjct: 2   KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61

Query: 440 --SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
              + +  L I++    D+  Y    E+       +V   ++   D  
Sbjct: 62  LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANSDTH 108

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 78.8 bits (195), Expect = 4e-18
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
           +  PGP    L     +  +  + W PP Y  G  V  Y +   ++S      I      
Sbjct: 5   SSGPGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIEVD--G 60

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
            ++ ++GL +  EY    +A N  G G   +    I   +  D     G
Sbjct: 61  LSYKLEGLKKFTEYSLRFLAYNRYGPGVSTD---DITVVTLSDSGPSSG 106

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 2/92 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
           P P +          S+ + W  P +  G  +  Y +   E        +      +  +
Sbjct: 8   PGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIEVDG-LSYKL 65

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            GL    +Y  R  A N YG    +    ++T
Sbjct: 66  EGLKKFTEYSLRFLAYNRYGPGVSTDDITVVT 97

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
           S    P P             + ++W+ P    G  +QGY +   EV +   Q + V   
Sbjct: 3   SGSSGPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIEVD-- 59

Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
                 +  L +  +Y  R  A N  G  + +     V + D 
Sbjct: 60  -GLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDS 101

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 81.4 bits (200), Expect = 9e-18
 Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 24/218 (11%)

Query: 91  PPIGPLDVSEIT---KHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC---- 143
           PP  P ++S +     ++    W P   +  L  T ++++             T      
Sbjct: 4   PPASPSNLSCLMHLTTNSLVCQWEPGP-ETHLP-TSFILKSFRSRADCQYQGDTIPDCVA 61

Query: 144 ----HDTTFIVQGLTEGQEYLFHVMAVNENGMGP-PLEGINPIKAKSPYDKPSPPGIPVV 198
               ++ +   + L   Q     V A N  G    P   ++P+       K  PP +  +
Sbjct: 62  KKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMD----VVKLEPPMLQAL 117

Query: 199 T------QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIP 252
                        + LSW           +     + ++    W  V     +  Q  + 
Sbjct: 118 DIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELC 177

Query: 253 NLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 290
            L +   Y  ++     +     S  S  +Q++  M A
Sbjct: 178 GLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMKA 215

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 55.6 bits (133), Expect = 7e-09
 Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 11/118 (9%)

Query: 460 RVVAENDLGM---DSAIVKIQISDRPDPPQFPTVE------DIGHDSLALVWRAPIWDGG 510
            V AEN LG        +      + +PP    ++            L L W+       
Sbjct: 84  WVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEY 143

Query: 511 SNITNYIVEKREHPMSSWIRVGNTRF--TTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
                 +  + +   ++W  V +         + GL     Y  ++           S
Sbjct: 144 MEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWS 201

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 81.0 bits (199), Expect = 1e-17
 Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 13/189 (6%)

Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSV 355
             P     A    +    C+ TGC  P  SW              +  EG T TL +N V
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS---PLNGKVTNEGTTSTLTMNPV 61

Query: 356 YGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG- 414
              +   Y+C A  +        ++ I + PK         +   + G+ + VK      
Sbjct: 62  SFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHL---SGPLEAGKPITVKCSVADV 118

Query: 415 YPKPK--ITWYRDNEVIESGGHFHVETSE----RHAILTIRDASNVDTAPYRVVAENDLG 468
           YP  +  I   + + +++S         +    +   +T               A+  + 
Sbjct: 119 YPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID 178

Query: 469 MDSAIVKIQ 477
              ++  ++
Sbjct: 179 EMDSVPTVR 187

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 79.8 bits (196), Expect = 3e-17
 Identities = 23/192 (11%), Positives = 48/192 (25%), Gaps = 12/192 (6%)

Query: 306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 365
           +N      C  +      +S      E       +  +        I S     A    C
Sbjct: 23  KNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFC 81

Query: 366 RAVNKGGVKSTKAELIIMTAPKF-NVPPRFRDTAYFDKGENVVVKIPFTGYP--KPKITW 422
            A        +   ++++   +  +V            GE +V+               W
Sbjct: 82  EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW 141

Query: 423 YRDNEVIESGG--------HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV 474
              +   +               E  +  + LTI   +  D   Y   A + L       
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 201

Query: 475 KIQISDRPDPPQ 486
            +++ + P   +
Sbjct: 202 FVRVHEDPIEGR 213

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 76.3 bits (188), Expect = 3e-17
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 293 PEIIVP--LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
             I+ P    +     +      C ++       +W K  +++  S    +  +G  + L
Sbjct: 9   VHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRL 67

Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           I+      D+ E+ CR        S    + +
Sbjct: 68  ILPEAKVQDSGEFECRTEG----VSAFFGVTV 95

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
            P   + P+ + +  F   E VV+    +       TWY+D + +E      V+   R  
Sbjct: 7   GPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKH 65

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
            L + +A   D+  +    E         V +Q    P  P
Sbjct: 66  RLILPEAKVQDSGEFECRTEGVSA--FFGVTVQ---DPSGP 101

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 31  KNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPG 90
           K+G+ V+  +     +      + + E + +D+G++       +  VS  F + +    G
Sbjct: 45  KDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFEC----RTEGVSAFFGVTVQDPSG 100

Query: 91  PPIG 94
           P  G
Sbjct: 101 PSSG 104

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 83.9 bits (206), Expect = 3e-17
 Identities = 67/514 (13%), Positives = 137/514 (26%), Gaps = 63/514 (12%)

Query: 26  EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
            VS    GR   ++        +   ++ I ++ ++D+G Y   L  +S  +S   ++ +
Sbjct: 55  YVSSKYAGRANLTNFP-----ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWN-------PPKY---DGGLKVTHYVVERRDISMPH 135
           +  PG        +     T T++           K      GL     +     ++  +
Sbjct: 110 SQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNY 169

Query: 136 WICISTTCHDT-----TFIVQGLTEGQE--YLFHVMAVNENGMGPPLEGINPIKAKSPYD 188
              I      T     + ++  L       YL        +      +  +    K   +
Sbjct: 170 TGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQA----GDDSNSNKKNADLQVLKPEPE 225

Query: 189 KPSPP---GIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
                    +     +G +  N++        G           +       R+ +    
Sbjct: 226 LVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQD 285

Query: 246 PS---QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNA 302
                 + I  L +     +   A ++  L   S         +        I       
Sbjct: 286 KDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEE----STIPRSPTVV 341

Query: 303 NAIQNHNAQFQCTITGCPKPTISWL-----------------KGSREITPSARHHIFAEG 345
             +   +    C        +I +                  +G  +     R  +  E 
Sbjct: 342 KGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEP 401

Query: 346 D--TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKG 403
              T+T+I+N +   DA  Y C        ++T    II   P   VP            
Sbjct: 402 GNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLK 461

Query: 404 ENVVVKIPFTGYPKPKITWYRD-------NEVIESGGHFHVETSERHAILTIRDASNVDT 456
                   F+ Y K    W           +   S    + + + R   LT+   +  D 
Sbjct: 462 VPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADE 521

Query: 457 APYR-VVAENDLGMDSAIVKIQISDRPDPPQFPT 489
             Y   V +     ++A V + + +R        
Sbjct: 522 GWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDV 555

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 75.4 bits (184), Expect = 2e-14
 Identities = 38/306 (12%), Positives = 92/306 (30%), Gaps = 37/306 (12%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR-NANAIQNHNAQFQCTITGCPKPTI 324
           A +++  +  ++    ++ +  +  +     V           + A+F C  +      +
Sbjct: 204 AGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDV 263

Query: 325 SWLK-GSREITPSARHHIF--AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 381
                G R      R  +    +  +++++I  +   DA  Y+C A + G ++       
Sbjct: 264 VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA 323

Query: 382 -IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE---------VIES 431
             +   + +  PR         G +V V  P+       I ++   E         +++S
Sbjct: 324 WQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDS 383

Query: 432 GGHFHVETSERHAI----------LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
            G    +   R ++          + +   ++ D   Y  +   D    + +    I   
Sbjct: 384 EGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGE 443

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
           P+      V  +  ++L +    P                      W +  NT    +  
Sbjct: 444 PNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKY-------------WCKWNNTGCQALPS 490

Query: 542 TGLSPG 547
               P 
Sbjct: 491 QDEGPS 496

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 62.3 bits (150), Expect = 2e-10
 Identities = 43/328 (13%), Positives = 78/328 (23%), Gaps = 59/328 (17%)

Query: 310 AQFQCTI---TGCPKPTISWLKG--------------SREITPSARHHI--FAEGDTYTL 350
               C     +        W +                     + R ++  F E  T+ +
Sbjct: 18  VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVV 77

Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI 410
            I  +   D+  Y C         S    L +   P      +       D G  V +  
Sbjct: 78  NIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKV---YTVDLGRTVTINC 134

Query: 411 PFTGYPKPKIT-WYRDN-----EVIESGGHFHVETSERHAI-----------LTIRDASN 453
           PF      K    Y+        VI+S G+ +   + R  +           + I     
Sbjct: 135 PFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL 194

Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNI 513
            D   Y   A +D   +     +Q+        +  +      S+               
Sbjct: 195 SDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLR----GSVTFHCALGPEVANVAK 250

Query: 514 TNYIVEKREHPMSSWIRVG------NTRFT----------TMAITGLSPGHQYEFRVYAE 557
                   E+       +G        R            ++ ITGL       +   A 
Sbjct: 251 FLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAH 310

Query: 558 NVYGRSDPSTTSDLITTYGELLSGMEAP 585
           +     + S          E  +   +P
Sbjct: 311 SDGQLQEGSPIQAWQLFVNEESTIPRSP 338

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 79.3 bits (195), Expect = 4e-17
 Identities = 28/213 (13%), Positives = 65/213 (30%), Gaps = 27/213 (12%)

Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP------------------ 335
           E+ +        +++N               +W KG+                       
Sbjct: 1   EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60

Query: 336 -SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 394
            S R  I++ G   +L+   +   D   Y     ++   ++       +  P      + 
Sbjct: 61  YSGREIIYSNG---SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQV 117

Query: 395 RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNV 454
            +T    + ++V +    +      I W  +++ ++      +  S+ ++IL I      
Sbjct: 118 TNTTV-KELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTL--SQNNSILRIDPIKRE 173

Query: 455 DTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQ 486
           D   Y+    N +    S  +K+ I   P    
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDIIFDPHHHH 206

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 65.5 bits (159), Expect = 2e-12
 Identities = 26/201 (12%), Positives = 57/201 (28%), Gaps = 17/201 (8%)

Query: 197 VVTQVGGDFVNLSWDKPLD-DGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLI 255
           +V  +       +W K         I  +  + +   +         I +   +    + 
Sbjct: 20  LVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMIT 79

Query: 256 EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT 315
                 + +   +E              ++  +     +  + + N    +  +    C 
Sbjct: 80  MKDMGVYTLDMTDENY------RRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC- 132

Query: 316 ITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK- 374
           ++      I WL  S+ +  + R  +        L I+ +   DA EY C   N   V+ 
Sbjct: 133 LSNDIGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRR 190

Query: 375 STKAELIIMTAPKFNVPPRFR 395
           S   +L I         P   
Sbjct: 191 SNSIKLDI------IFDPHHH 205

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
                + E D+  +    + D    +    N + +Q  +R   +   +  I+ I  I++E
Sbjct: 117 VTNTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLS--QNNSILRIDPIKRE 173

Query: 62  DAGDYTVNLSNS-SGSVSGTFTINITGLPGP 91
           DAG+Y   +SN  S   S +  ++I  +  P
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDI--IFDP 202

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 77.0 bits (189), Expect = 5e-17
 Identities = 25/138 (18%), Positives = 37/138 (26%), Gaps = 15/138 (10%)

Query: 71  SNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK--------VT 122
           S SSG            L          S+I   T  L W+PP      +        + 
Sbjct: 3   SGSSGDEETK---AFEALLSNI-VKPVASDIQARTVVLTWSPPSSLINGETDESSVPELY 58

Query: 123 HYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
            Y V                  +T   +  L    +Y   V A   +  G P E      
Sbjct: 59  GYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSE---AEI 115

Query: 183 AKSPYDKPSPPGIPVVTQ 200
             +   +P  P  P ++ 
Sbjct: 116 FTTLSCEPDIPNPPRISG 133

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 65.4 bits (159), Expect = 6e-13
 Identities = 21/115 (18%), Positives = 29/115 (25%), Gaps = 10/115 (8%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSN--------ITNYIVEKREHPMSSWIR- 530
                   P   DI   ++ L W  P               +  Y V           + 
Sbjct: 16  ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKS 75

Query: 531 VGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAP 585
           V     T + +  L P   Y  +V AE    +  PS      TT          P
Sbjct: 76  VYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEI-FTTLSCEPDIPNPP 129

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 9/108 (8%)

Query: 179 NPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSR--------IQGYWIDKHE 230
              + K+     S    PV + +    V L+W  P               + GY +    
Sbjct: 7   GDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISS 66

Query: 231 VGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
            G D   +        + I + +L     Y  +V A+  +    PS A
Sbjct: 67  TGKDGKYKSVYVGEETN-ITLNDLKPAMDYHAKVQAEYNSIKGTPSEA 113

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 75.5 bits (186), Expect = 7e-17
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 291 KAPEIIVPLRNANAIQ-NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTY 348
           K+      L  A  +   H  +    +       + WLK  +EI  S   +IF + G   
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           TL I+     D   Y C        +    EL +
Sbjct: 73  TLTISQCSLADDAAYQCVVGG----EKCSTELFV 102

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 391 PPRF----RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-ESGGHFHVETSERHAI 445
              F           KG  + + +        ++ W ++ + I  SG  +  E+      
Sbjct: 15  STAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 477
           LTI   S  D A Y+ V   +    S  + ++
Sbjct: 74  LTISQCSLADDAAYQCVVGGEKC--STELFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 1  MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQ-SDDRFKFTVLDDYIIIFIKEIR 59
          +  A  + +G   ++ +  A     EV   KNG+ +Q S  ++ F  +     + I +  
Sbjct: 22 LEPAYQVSKGHKIRLTVELADHDA-EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCS 80

Query: 60 KEDAGDYTVNLSNSSGS 76
            D   Y   +     S
Sbjct: 81 LADDAAYQCVVGGEKCS 97

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 75.5 bits (186), Expect = 9e-17
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 468 GMDSAIVKIQIS-DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
              S  +++      P  P     E     S+ L W  P       I NY +  ++    
Sbjct: 3   SGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPR---SDTIANYELVYKDGEHG 59

Query: 527 SWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
              R+     T+  + GL P   Y FR+ A +  G    +      T 
Sbjct: 60  EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTM 107

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 8/107 (7%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
           G          I+  +    P  P            + LSW  P  D    I  Y +   
Sbjct: 1   GSSGSSG---DIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYK 54

Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
           +      QR+ +     +   +  L     Y FR+ A++  GL   +
Sbjct: 55  DGEHGEEQRITIE--PGTSYRLQGLKPNSLYYFRLAARSPQGLGAST 99

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
           G+PG P+        ++ +  L W PP+ D    + +Y +  +D        I+     T
Sbjct: 16  GVPGQPLN-FKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIE-PGT 70

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
           ++ +QGL     Y F + A +  G+G        I A++        G
Sbjct: 71  SYRLQGLKPNSLYYFRLAARSPQGLGAS---TAEISARTMQSSGPSSG 115

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 82.7 bits (203), Expect = 1e-16
 Identities = 54/447 (12%), Positives = 122/447 (27%), Gaps = 66/447 (14%)

Query: 178 INPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI----------- 226
           I            +        +   D + L W+         + G+ +           
Sbjct: 457 IALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVT 516

Query: 227 ---DKHEVGSDAWQRVNVAICAPSQ---------INIPNLIEGRQYEFRVYAQNEAGLSL 274
               +   GS++W  V++     S            +  L    QY   V          
Sbjct: 517 EFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDER 576

Query: 275 PS--SASNSVQIKDPMAA--KAPEIIVPLRNANAIQ---NHNAQFQCTITGCPKPTISWL 327
            +  + S+ + ++          + I    +++ I       +     IT      + W 
Sbjct: 577 RTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHY---LVFW- 632

Query: 328 KGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
                    +             + +  +    +    +  N+   + +  E        
Sbjct: 633 ---ERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTD 689

Query: 388 FNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
             +     ++++   F+   + VV +P     +  +    +    E    F    ++   
Sbjct: 690 SQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESL 749

Query: 445 ILTIRDASNVDTAPY-----RVVAENDLG-----MDSAIVKIQISDR---PDPPQFPTVE 491
           +++           +      + A N          +A V  +        D     T E
Sbjct: 750 VIS-------GLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHE 802

Query: 492 DIGHDSLALVWRAPIWDGGSNITNYIVEKREH---PMSSWI-RVGNTRFTTMAITGLSPG 547
              ++ + L+W+ P    G  I  Y V  R +    +     R          + GLSPG
Sbjct: 803 IFENNVVHLMWQEPKEPNGL-IVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG 861

Query: 548 HQYEFRVYAENVYGRSDPSTTSDLITT 574
           + Y  R+ A ++ G    +  +    T
Sbjct: 862 N-YSVRIRATSLAGNGSWTEPTYFYVT 887

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 80.0 bits (196), Expect = 9e-16
 Identities = 27/244 (11%), Positives = 62/244 (25%), Gaps = 35/244 (14%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR------------------- 129
               +        +     L W P        +  +++  +                   
Sbjct: 468 CENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSN 527

Query: 130 -----DISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI--NPIK 182
                DI  P       + +   ++++GL    +Y   V  +          G   + I 
Sbjct: 528 SWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIY 587

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
            ++    PS P  P+        + L W  P D  G  I  Y +       D+       
Sbjct: 588 VQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFEL-- 644

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNA 302
                       +  R +     +++    +      ++ +       K    I+     
Sbjct: 645 ----DYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGE--CCSCPKTDSQILKELEE 698

Query: 303 NAIQ 306
           ++ +
Sbjct: 699 SSFR 702

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 73.8 bits (180), Expect = 7e-14
 Identities = 35/238 (14%), Positives = 65/238 (27%), Gaps = 9/238 (3%)

Query: 66  YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDV--SEITKHTCTLHWNPPKYDGGLKVTH 123
                       + +  I +      P  PLD      +     L W PP    G  +TH
Sbjct: 569 LVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGN-ITH 627

Query: 124 YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA 183
           Y+V     +    +     C             + +     + +           +  + 
Sbjct: 628 YLVFWERQAEDSELFELDYCLKGL-----KLPSRTWSPPFESEDSQKHNQSEYEDSAGEC 682

Query: 184 KSPYDKPSPPGIPV-VTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
            S     S     +  +     F +   +       SR +    D    G++   R    
Sbjct: 683 CSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEK 742

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 300
           +     + I  L     Y   + A N+       S +  V  +    AKA +I+ P+ 
Sbjct: 743 VVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVT 800

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 7/114 (6%)

Query: 66  YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVS--EITKHTCTLHWNPPKYDGGLKVTH 123
              +      SV+   +               V+      +   L W  PK   GL +  
Sbjct: 767 CNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGL-IVL 825

Query: 124 YVVE-RRDISMPHWICISTTCH--DTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
           Y V  RR       +C +      +    ++GL+ G  Y   + A +  G G  
Sbjct: 826 YEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSW 878

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 76.8 bits (189), Expect = 2e-16
 Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 27/193 (13%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDT 347
           A     + +     N +Q  +    C     P+  +I W      I    +         
Sbjct: 1   APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP-------- 52

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 407
                      D+ EY C+        S    L ++        P       F +GE ++
Sbjct: 53  --SYRFKANNNDSGEYTCQT--GQTSLSDPVHLTVLFEWLVLQTP----HLEFQEGETIM 104

Query: 408 VK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND 466
           ++   +   P  K+T++++ +  +         S      +I  A++  +  Y       
Sbjct: 105 LRCHSWKDKPLVKVTFFQNGKSQKF--------SHLDPTFSIPQANHSHSGDYHCTGNIG 156

Query: 467 LGM-DSAIVKIQI 478
             +  S  V I +
Sbjct: 157 YTLFSSKPVTITV 169

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 78.7 bits (193), Expect = 2e-16
 Identities = 23/232 (9%), Positives = 64/232 (27%), Gaps = 14/232 (6%)

Query: 69  NLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128
           N   ++     T   +   +   P+  +             W          +T +   +
Sbjct: 16  NEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYK 75

Query: 129 RDISMPHWIC---ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKS 185
              +     C   + +    +   +Q         F V   +          +  +    
Sbjct: 76  NSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKL---Q 132

Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
               P  P    + ++    + L+W+       +    + +        +W   +V    
Sbjct: 133 NLVIPWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSVDY-- 187

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLS---LPSSASNSVQIKDPMAAKAPE 294
             + ++P++   ++Y FRV ++           S  S+ +      + + P 
Sbjct: 188 RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSKENPR 239

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 62.1 bits (150), Expect = 6e-11
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 447 TIRDASNVDTAPYRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWR 503
            ++         + V  ++        + ++K+Q    P  P+  T+  +    L L W 
Sbjct: 99  QLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN 158

Query: 504 APIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRS 563
                  ++   ++V+ R     SW           ++  +    +Y FRV +       
Sbjct: 159 NRFL---NHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCG 215

Query: 564 DPSTTSD 570
                S+
Sbjct: 216 SAQHWSE 222

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 75.4 bits (185), Expect = 2e-16
 Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 14/118 (11%)

Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR-------- 338
           P  +     +    +       + +  C   G P P I W    +               
Sbjct: 16  PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75

Query: 339 -----HHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL-IIMTAPKFNV 390
                H  + +    T+ I+++   D   Y CRA N            +     +  V
Sbjct: 76  DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVV 133

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 16/102 (15%)

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
               F   P    +     G +V +     G P P+I W+ + +          + +   
Sbjct: 20  HMAGFVQAPL---SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76

Query: 444 AI-------------LTIRDASNVDTAPYRVVAENDLGMDSA 472
            +             ++I      DT  Y   A ND   +  
Sbjct: 77  RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHL 118

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 74.5 bits (183), Expect = 2e-16
 Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-----ARHHIFAEGD 346
            P I+    +    +   A   C   G P PTI W KG   +        +   +   G 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 347 TYTLIINSVYGVDADE--YVCRAVNK-GGVKSTKAELIIMTAPKFNV 390
            + L I        DE  YVC A N  G   S  A L +  A   + 
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 49.8 bits (119), Expect = 9e-08
 Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 13/107 (12%)

Query: 389 NVPPRF----RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES-----GGHFHVET 439
           + PPR      D     KGE   +     G P P I WY+  E +E+       H  +  
Sbjct: 7   DFPPRIVEHPSDLI-VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65

Query: 440 SERHAILTIRD--ASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPD 483
           S     L I     S  D   Y  VA N LG   S    ++++    
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH 112

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 16/111 (14%)

Query: 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFT 537
           R D P    V+D+   +  + W  P       +  + +      +      I +      
Sbjct: 2   RLDAPSQIEVKDVTDTTALITWMPP----SQPVDGFELTYGIKDVPGDRTTIDLTEDE-N 56

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISL 588
             +I  L P  +YE  + +      S+P+  +   TT      G+ A +  
Sbjct: 57  QYSIGNLKPDTEYEVSLISRRGDMSSNPAKET--FTT------GLAAALEH 99

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 10/106 (9%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTT 147
              P   ++V ++T  T  + W PP       V  + +      +P     I  T  +  
Sbjct: 3   LDAPSQ-IEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57

Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
           + +  L    EY   +++   +    P +        +        
Sbjct: 58  YSIGNLKPDTEYEVSLISRRGDMSSNPAKET----FTTGLAAALEH 99

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           +   P    V  V      ++W  P       + G+ +          +         +Q
Sbjct: 2   RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            +I NL    +YE  + ++     S P+  +
Sbjct: 58  YSIGNLKPDTEYEVSLISRRGDMSSNPAKET 88

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTTM 539
           D P    V ++   S+ + W  P     + IT Y +             + V  +  T++
Sbjct: 3   DAPTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSS-TSV 57

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGEL 578
            ITGL+PG +Y   VYA      S P   +   TT G  
Sbjct: 58  TITGLTPGVEYVVSVYALKDNQESPPLVGT--QTTGGHH 94

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 90  GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTTF 148
             P   L V+ +T  + T+ W PP       +T Y +     + P     ++     T+ 
Sbjct: 3   DAPTD-LQVTNVTDTSITVSWTPPSAT----ITGYRITYTPSNGPGEPKELTVPPSSTSV 57

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
            + GLT G EY+  V A+ +N   PPL G 
Sbjct: 58  TITGLTPGVEYVVSVYALKDNQESPPLVGT 87

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
             P    VT V    + +SW  P     + I GY I           +      + + + 
Sbjct: 3   DAPTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           I  L  G +Y   VYA  +   S P   +
Sbjct: 59  ITGLTPGVEYVVSVYALKDNQESPPLVGT 87

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 80.4 bits (197), Expect = 3e-16
 Identities = 65/512 (12%), Positives = 133/512 (25%), Gaps = 56/512 (10%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
                  L  +          W  P       V    ++ R  S             T  
Sbjct: 4   DDDDKD-LKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHS-------CHPLETTNV 55

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP-GIPVVTQVGGDFVN 207
            +  L+ G ++   +  +N       L        K     P  P  + +        + 
Sbjct: 56  KIPALSPG-DHEVTINYLNGFQSKFTLN------EKDVSLIPETPEILDLSADFFTSSLL 108

Query: 208 LSWDKPLDDGGSRIQGYW---IDKHEVGSDAWQRVNVAICAPS------QINIPNLIEGR 258
           L W+             W   + ++         +   + +               ++  
Sbjct: 109 LKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCA 168

Query: 259 QYEFRV-YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT 317
            +   + +  +    S     S+   +K+    +  E  V  ++   +   N    C   
Sbjct: 169 THSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSP 228

Query: 318 GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 377
                          I      H++ +     ++   V        +    +     +  
Sbjct: 229 TKVLSGQIGNTLRPLI------HLYGQTVAIHILNIPVSENSGTNIIFI-TDDDVYGTVV 281

Query: 378 AELIIMTAPKFNVPPRFRDTAYFDKGENVVV---KIPFTGYPKPKITWYRDNEVIESGG- 433
                   P+  +      +      + ++        TG   P+ T Y   E I     
Sbjct: 282 FAGYPPDVPQ-KL------SCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSA 334

Query: 434 --HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR--PDPPQFPT 489
             H     +     L ++     +   + +   N LG   + V I +++R  P  P    
Sbjct: 335 VFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLK 394

Query: 490 VEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW-----IRVGNTRFTTMAITGL 544
           V+DI    +   W  P      N+    +E  +           IR        +A+  L
Sbjct: 395 VKDINSTVVTFSWYLPGNFTKINLL-CQIEICKANSKKEVRNATIRGAEDSTYHVAVDKL 453

Query: 545 SPGHQYEFRVYA--ENVYGRSDPSTTSDLITT 574
           +P   Y FRV    +  +  S  S     +TT
Sbjct: 454 NPYTAYTFRVRCSSKTFWKWSRWSDEKRHLTT 485

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 51.5 bits (122), Expect = 4e-07
 Identities = 49/398 (12%), Positives = 101/398 (25%), Gaps = 34/398 (8%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           K         T       + +W  PL      ++   I          +  NV       
Sbjct: 3   KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETTNVK------ 56

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRN------- 301
             IP L  G  +E  +   N        +  +   I +              +       
Sbjct: 57  --IPALSPGD-HEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWND 113

Query: 302 ANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD 361
             +   H +     I     P    +      T  +      +   +    + +    A 
Sbjct: 114 RGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSG----KDTVQHWNWTSDLPLQCAT 169

Query: 362 EYV-CRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY--PKP 418
             V  R        S   E    +  K     R  +T  F + + V+     T       
Sbjct: 170 HSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPT 229

Query: 419 KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           K+   +    +    H + +T      + I +    + +   ++   D  +      +  
Sbjct: 230 KVLSGQIGNTLRPLIHLYGQTV----AIHILNIPVSENSGTNIIFITDDDVYG--TVVFA 283

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDG--GSNITNYIVEKR---EHPMSSWIRVGN 533
              PD PQ  + E      +   W      G  G   T Y + +    +  +   I    
Sbjct: 284 GYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLT 343

Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDL 571
                + +        + F +   N  G++  +   ++
Sbjct: 344 NETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINV 381

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 41.9 bits (97), Expect = 5e-04
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 7/93 (7%)

Query: 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
           + D  +               W AP+      + +  ++ R H             T + 
Sbjct: 3   KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHS------CHPLETTNVK 56

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           I  LSPG  +E  +   N +         D+  
Sbjct: 57  IPALSPGD-HEVTINYLNGFQSKFTLNEKDVSL 88

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTTM 539
            PP    V +I   +  + W+ PI      I   +V        S    + + ++  T++
Sbjct: 3   QPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSI-TSL 57

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            +T L P   YE R+ A N    S P +T+   TT
Sbjct: 58  TLTNLEPNTTYEIRIVARNGQQYSPPVSTT--FTT 90

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW-ICISTTCHDTTFI 149
           PP   + V+ IT  T  + W PP     L +   +V     + P     +  T   T+  
Sbjct: 4   PPFN-IKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58

Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEG 177
           +  L     Y   ++A N     PP+  
Sbjct: 59  LTNLEPNTTYEIRIVARNGQQYSPPVST 86

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
            PP    VT +      ++W  P+      I+G  +        + +       + + + 
Sbjct: 3   QPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           + NL     YE R+ A+N    S P S +
Sbjct: 59  LTNLEPNTTYEIRIVARNGQQYSPPVSTT 87

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 73.4 bits (180), Expect = 7e-16
 Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 7/105 (6%)

Query: 391 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET-------SERH 443
            P         +  +  +     G P P + W  +  V+        E        + RH
Sbjct: 3   MPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH 62

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
             L +   ++V+   Y ++A N  G  SA +     D P      
Sbjct: 63  GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 67.3 bits (164), Expect = 9e-14
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 10/107 (9%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY---- 348
           P  +   +   A++ H+     ++ G P P++ WL     +  ++               
Sbjct: 4   PASV---QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 349 ---TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
               L +N    V+   Y   A N  G  S       M  P    P 
Sbjct: 61  RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 31  KNGRVVQSDDRFKFTVLDD-------YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI 83
            NG V+          L+        +  + + +    + G+YT+  +N  G  S +   
Sbjct: 36  FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95

Query: 84  NITGLP--GPPIGPLDVSEITKHTCTLHWN 111
                P    P  P+  +  T        +
Sbjct: 96  AFMDNPFEFNPEDPIPDTNSTSGDPVEKKD 125

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 75.9 bits (186), Expect = 7e-16
 Identities = 42/210 (20%), Positives = 70/210 (33%), Gaps = 22/210 (10%)

Query: 91  PPIGPLDVSEITK--HTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CISTTCH 144
           PP  P      +    T T  W P   DGGL  T+Y +                I+   +
Sbjct: 3   PPGKPEIFKCRSPNKETFTCWWRPGT-DGGLP-TNYSLTYHREGETLMHECPDYITGGPN 60

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT----Q 200
              F  Q  +  + Y+  V A N+ G     E        +   +P PP    V     +
Sbjct: 61  SCHFGKQYTSMWRTYIMMVNATNQMGSSFSDE---LYVDVTYIVQPDPPLELAVEVKQPE 117

Query: 201 VGGDFVNLSWDKPL---DDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEG 257
               ++ + W  P       G     Y I      +  W+         ++  I +L  G
Sbjct: 118 DRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA--GQQTEFKILSLHPG 175

Query: 258 RQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
           ++Y  +V  + + G    S+ S +  I+ P
Sbjct: 176 QKYLVQVRCKPDHG--YWSAWSPATFIQIP 203

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 11/158 (6%)

Query: 420 ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM---DSAIVKI 476
           +T++R+ E +      ++           +  S   T    V A N +G    D   V +
Sbjct: 38  LTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDV 97

Query: 477 QISDRPDPPQFPTVE----DIGHDSLALVWRAP-IWDGGSNITN--YIVEKREHPMSSWI 529
               +PDPP    VE    +     L + W  P + D  +      Y +  +    + W 
Sbjct: 98  TYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWE 157

Query: 530 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR-SDPS 566
                + T   I  L PG +Y  +V  +  +G  S  S
Sbjct: 158 IHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWS 195

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 49.3 bits (117), Expect = 8e-07
 Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 67  TVNLSNSSGSVS---GTFTINITGLPGPPIGP---LDVSEITKHTCTLHWNPPKY---DG 117
            VN +N  GS         +     P PP+     +   E  K    + W+PP       
Sbjct: 78  MVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKT 137

Query: 118 GLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG 170
           G     Y +  +      W  I      T F +  L  GQ+YL  V    ++G
Sbjct: 138 GWFTLLYEIRLKPEKAAEWE-IHFAGQQTEFKILSLHPGQKYLVQVRCKPDHG 189

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 74.5 bits (183), Expect = 1e-15
 Identities = 24/196 (12%), Positives = 61/196 (31%), Gaps = 27/196 (13%)

Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTY 348
            + P++ +        +  N    C      +  +  W         +            
Sbjct: 2   PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS---------- 51

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
           +L I +    D+ EY C+       +S    L + +                 +G+ + +
Sbjct: 52  SLNIVNAKFEDSGEYKCQHQQ--VNESEPVYLEVFSDWLLLQASA----EVVMEGQPLFL 105

Query: 409 K-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDL 467
           +   +  +   K+ +Y+D E ++            +  ++I +A+  D+  Y    +   
Sbjct: 106 RCHGWRNWDVYKVIYYKDGEALKY--------WYENHNISITNATVEDSGTYYCTGKVWQ 157

Query: 468 G-MDSAIVKIQISDRP 482
              +S  + I +   P
Sbjct: 158 LDYESEPLNITVIKAP 173

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 12/114 (10%), Positives = 33/114 (28%), Gaps = 14/114 (12%)

Query: 276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQC-TITGCPKPTISWLKGSREIT 334
            + S  V +       +  +++       ++      +C          + + K    + 
Sbjct: 73  VNESEPVYL----EVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK 128

Query: 335 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPK 387
               +H         + I +    D+  Y C         +S    + ++ AP+
Sbjct: 129 YWYENH--------NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
           +    V + +         Q +C +      +I+WL+   ++  S R  I  E     + 
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE----EVE 57

Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
           +      D+  Y C   +  G  +T   + +  A 
Sbjct: 58  VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 64.0 bits (156), Expect = 6e-13
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
           ++    V      +     G+ + ++          I W RD   +       +   E  
Sbjct: 2   SSGSSGVEVE---SFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE-- 55

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
             + ++D+   D+  Y  V  +  G D+    + +SD     
Sbjct: 56  --VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 55.1 bits (133), Expect = 8e-10
 Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 10/78 (12%)

Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFT--VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77
            D    ++  ++G  +   +R + T   ++      +++    D+G Y    S+ SGS 
Sbjct: 27 LRDDVQSINWLRDGVQLAESNRTRITGEEVE------VQDSVPADSGLYACVTSSPSGSD 80

Query: 78 SGTFTINITGLPGPPIGP 95
          +  F++N++     P GP
Sbjct: 81 TTYFSVNVS--DALPSGP 96

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 75.6 bits (185), Expect = 4e-15
 Identities = 27/214 (12%), Positives = 56/214 (26%), Gaps = 33/214 (15%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGC-PKP---TISWLKGSREITPSARHHIFAEGDT 347
           A  + +       +         T+ G  P P   T +W K  +              +T
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE----------NNT 51

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII---MTAPKFNVPPRFR-----DTAY 399
            TL +      +A  Y     +   + S ++E+ +            P+           
Sbjct: 52  ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111

Query: 400 FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY 459
                            +   +W +  +VI++              +TI++ +      Y
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDTT-----------QDITIQEFTADKNGVY 160

Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDI 493
            V    +    +A    +I           VE  
Sbjct: 161 TVKVWGESEDSAASASTKIMLATMNVDQDVVESK 194

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 72.2 bits (176), Expect = 4e-14
 Identities = 36/270 (13%), Positives = 71/270 (26%), Gaps = 42/270 (15%)

Query: 236 WQRVNVAIC-APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPE 294
           W + +       + + + +        ++V  Q+   ++   S    ++  +        
Sbjct: 40  WTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL-----IV 94

Query: 295 IIVPLRNANAIQNHNAQFQCTI---TGCPKP-----TISWLKGSREITPSARHHIFAEGD 346
            I   ++       + +   T+    G           SW KG   I             
Sbjct: 95  NITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI-----------DT 143

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD-------TAY 399
           T  + I          Y  +   +    +  A   IM A                     
Sbjct: 144 TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEIS 203

Query: 400 FDKGENVVVKIPFTGYPKPKIT--WYRDNE--------VIESGGHFHVETSERHAILTIR 449
            +   +  +    +G P   I   WY   E          E G      +      L   
Sbjct: 204 LNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKE 263

Query: 450 DASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
            A+  DTA +  VA+    ++   V++  S
Sbjct: 264 SATYDDTAKFWCVAKLYQQIEDETVEVAAS 293

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 36/266 (13%), Positives = 73/266 (27%), Gaps = 38/266 (14%)

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDF 205
            T  V   T      + V   + + M      +  ++        + P    V+      
Sbjct: 52  ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS--QTD 109

Query: 206 VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVY 265
           V L        G +    Y +        +W +    I     I I      +   + V 
Sbjct: 110 VELHATVKFSGGKTPADNYEL------HYSWSKGEDVIDTTQDITIQEFTADKNGVYTVK 163

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI--------T 317
              E+  S  ++++++  +   M          + +      +       +        +
Sbjct: 164 VWGESEDS--AASASTKIMLATMNVDQD----VVESKTVALGNEISLNYVVSEDIVGDSS 217

Query: 318 GCPKPTISW-------------LKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYV 364
           G P  TI +             L GS          I  +G    L   S    D  ++ 
Sbjct: 218 GMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH---LFKESATYDDTAKFW 274

Query: 365 CRAVNKGGVKSTKAELIIMTAPKFNV 390
           C A     ++    E+   T+ K ++
Sbjct: 275 CVAKLYQQIEDETVEVAASTSRKCSM 300

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 70.7 bits (173), Expect = 5e-15
 Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 14/124 (11%)

Query: 372 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP-KITWYRDNEVIE 430
           G   +   L +   P  +       T +   GE   +K      P P +I W     V+E
Sbjct: 1   GSSGSSGTLTVNGPPIISSTQ----TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLE 56

Query: 431 SG--GHFHVETSERH----AILTIRDASNVDTA-PYRVVAENDLGMDSAIV--KIQISDR 481
           SG  G + VET        + LTI +    D    Y   A N  G D+ I+  K Q S+ 
Sbjct: 57  SGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116

Query: 482 PDPP 485
             P 
Sbjct: 117 SGPS 120

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 8/104 (7%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHI------FA 343
             P II   +  +A+     Q +C I   P P  I+W      +                
Sbjct: 12  NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71

Query: 344 EGDTYTLIINSVYGVD-ADEYVCRAVNKGGVKSTKAELIIMTAP 386
           EG   TL I+++   D    Y C A N  G  +    L    + 
Sbjct: 72  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 10/103 (9%)

Query: 2   PNALYIPEGDNTKVKIFYAGD-QPMEVSLTKNGRVVQSDDRFKFTVLDDYI------IIF 54
               +   G+  ++K F      P  ++ +    V++S    ++TV            + 
Sbjct: 20  TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLT 79

Query: 55  IKEIRKEDAGD-YTVNLSNSSGSVSGTFTINITG--LPGPPIG 94
           I  I + D    Y     NS GS +    +   G  + GP  G
Sbjct: 80  ISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 122

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 69.8 bits (171), Expect = 6e-15
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTTM 539
             P+   V ++  DSL L W AP     +   +++++ +E         + V  +   + 
Sbjct: 3   PAPKNLVVSEVTEDSLRLSWTAP----DAAFDSFMIQYQESEKVGEAINLTVPGSE-RSY 57

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
            +TGL PG +Y   +Y      RS+P +  
Sbjct: 58  DLTGLKPGTEYTVSIYGVKGGHRSNPLSAE 87

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP-HWICISTTCHDTTFI 149
           P    L VSE+T+ +  L W  P  D       ++++ ++       I ++    + ++ 
Sbjct: 3   PAPKNLVVSEVTEDSLRLSWTAP--DAA--FDSFMIQYQESEKVGEAINLTVPGSERSYD 58

Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEG 177
           + GL  G EY   +  V       PL  
Sbjct: 59  LTGLKPGTEYTVSIYGVKGGHRSNPLSA 86

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINI 251
            P   VV++V  D + LSW  P     +    + I   E              +    ++
Sbjct: 4   APKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYDL 59

Query: 252 PNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
             L  G +Y   +Y       S P SA 
Sbjct: 60  TGLKPGTEYTVSIYGVKGGHRSNPLSAE 87

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 71.8 bits (176), Expect = 7e-15
 Identities = 26/190 (13%), Positives = 62/190 (32%), Gaps = 27/190 (14%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLI 351
             + +  +  + ++  +   +C     P+  +  W      I+  A           +  
Sbjct: 8   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS----------SYF 57

Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-I 410
           I++    D+ EY C+        S   +L +         PR      F + + + ++  
Sbjct: 58  IDAATVNDSGEYRCQT--NLSTLSDPVQLEVHIGWLLLQAPR----WVFKEEDPIHLRCH 111

Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG-M 469
            +      K+T+ ++ +  +   H        ++   I  A+  D+  Y          +
Sbjct: 112 SWKNTALHKVTYLQNGKDRKYFHH--------NSDFHIPKATLKDSGSYFCRGLVGSKNV 163

Query: 470 DSAIVKIQIS 479
            S  V I I+
Sbjct: 164 SSETVNITIT 173

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 8/94 (8%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH--PMSSWIRVGNTRFTTMA 540
           D P+     D+  DS+ + W +P       ++ Y V        +       +    T  
Sbjct: 3   DRPKGLAFTDVDVDSIKIAWESP----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAE 58

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           + GL PG +Y   V A +    S P   +   +T
Sbjct: 59  LQGLRPGSEYTVSVVALHDDMESQPLIGT--QST 90

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 96  LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS-MPHWICISTTCHDTTFIVQGLT 154
           L  +++   +  + W  P+      V+ Y V         H +  +    + T  +QGL 
Sbjct: 8   LAFTDVDVDSIKIAWESPQGQ----VSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLR 63

Query: 155 EGQEYLFHVMAVNENGMGPPLEG 177
            G EY   V+A++++    PL G
Sbjct: 64  PGSEYTVSVVALHDDMESQPLIG 86

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
           +   P G+   T V  D + ++W+ P      ++  Y +          +          
Sbjct: 1   NIDRPKGL-AFTDVDVDSIKIAWESP----QGQVSRYRVTYSSPEDGIHELFPAPDGEED 55

Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
              +  L  G +Y   V A ++   S P   + S
Sbjct: 56  TAELQGLRPGSEYTVSVVALHDDMESQPLIGTQS 89

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 70.0 bits (171), Expect = 1e-14
 Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 12/111 (10%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCP---KPTISWLKGS-REITPSARHHI--- 341
            +     I   +        +  F   +       KPTI W KG   ++   A  H+   
Sbjct: 4   GSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLK 63

Query: 342 -----FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
                 +   T+ + I       A  Y C    K    S   +L +  +  
Sbjct: 64  ETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 15/115 (13%)

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYP---KPKITWYRDNEV---IESGGHFHV 437
           +   F   P+         GE++             KP I W++   +    ++G H  +
Sbjct: 6   SGILFIEKPQ---GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62

Query: 438 E------TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
           +      +      + I  A +     YR         DS    +++ +      
Sbjct: 63  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 11/63 (17%), Positives = 25/63 (39%)

Query: 30  TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
           +K G+ +Q  + F+         + I + +   AG+Y   ++      S +F + +    
Sbjct: 54  SKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113

Query: 90  GPP 92
           G  
Sbjct: 114 GTT 116

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 12/111 (10%)

Query: 478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFT 537
            S  PD P      ++      L W+ P     + +  Y ++                  
Sbjct: 4   GSSGPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETPGSAV 59

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISL 588
              +  L     Y   V        + P++ +   TT      G+EAP  L
Sbjct: 60  DYPLHDLVLHTNYTATVRGLRGPNLTSPASIT--FTT------GLEAPRDL 102

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 10/118 (8%)

Query: 85  ITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCH 144
            +  P  P   L    +T+    LHW PP+      V  Y ++      P      T   
Sbjct: 4   GSSGPDGPTQ-LRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQ-AETPGS 57

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVG 202
              + +  L     Y   V  +    +  P      I   +  + P       VT  G
Sbjct: 58  AVDYPLHDLVLHTNYTATVRGLRGPNLTSPA----SITFTTGLEAPRDLEAKEVTPSG 111

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 6/91 (6%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
            P  P       +   F  L W  P     + +  Y I     G+   Q       +   
Sbjct: 7   GPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETPG--SAVD 60

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
             + +L+    Y   V       L+ P+S +
Sbjct: 61  YPLHDLVLHTNYTATVRGLRGPNLTSPASIT 91

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 73.6 bits (180), Expect = 1e-14
 Identities = 32/299 (10%), Positives = 75/299 (25%), Gaps = 50/299 (16%)

Query: 190 PSPPGI--PVVTQVGGDFVNL----SWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI 243
            +PP +  P V +V      +        P+ +  +++     D+    +  +   + + 
Sbjct: 4   ATPPQLVSPRVLEVDTQ-GTVVCSLDGLFPVSE--AQVHLALGDQRLNPTVTYGNDSFSA 60

Query: 244 CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNAN 303
                       +                        +V I        P   V L    
Sbjct: 61  ---KASVSVTAEDEGTQRLTCAVILGNQ---SQETLQTVTIYSF-----PAPNVILTKPE 109

Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 363
             +      +C      K T++ +                 G    L++ +    +   +
Sbjct: 110 VSEGTEVTVKCEAHPRAKVTLNGVPAQ------------PLGPRAQLLLKATPEDNGRSF 157

Query: 364 VCRAVN----KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK 419
            C A      +   K+   EL ++  P+ +      +  +  +           G P P+
Sbjct: 158 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTW-PENSQQTPMCQAWGNPLPE 216

Query: 420 ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           +   +D       G                  +      Y   A +  G  +  V + +
Sbjct: 217 LKCLKDGTFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 26/178 (14%), Positives = 57/178 (32%), Gaps = 27/178 (15%)

Query: 312 FQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 370
            +C     P+  +  W      I+  A           +  I++    D+ EY C+   +
Sbjct: 27  LKCQGAYSPEDQSTQWFHNESLISSQAS----------SYFIDAATVDDSGEYRCQT--Q 74

Query: 371 GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVI 429
               S   +L +         PR      F + + + ++   +      K+T+ ++ +  
Sbjct: 75  LSTLSDPVQLEVHIGWLLLQAPR----WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGR 130

Query: 430 ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPDPPQ 486
           +   H        ++   I  A+  D+  Y          + S  V+I I+       
Sbjct: 131 KYFHH--------NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 3/95 (3%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW--IRVGNTRFTTM 539
           P       V      SL+L W  P    G  + +Y V+  E        +R   T     
Sbjct: 8   PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            + GL  G  Y  +V A +  G           T 
Sbjct: 67  ELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQ 101

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
             S    P       VT+     ++L+W  P    G  +  Y +  HE G++    V   
Sbjct: 1   GSSGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFL 59

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQ 283
             + ++  +  L  G  Y  +V A++EAG   P    +  Q
Sbjct: 60  KTSENRAELRGLKRGASYLVQVRARSEAGYG-PFGQEHHSQ 99

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 58.2 bits (141), Expect = 9e-11
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVE--RRDISMPHWICISTTCHDT 146
           P      + V+  +  + +L W  P+   G  V  Y V+   +    P  +    T  + 
Sbjct: 8   PPAV-SDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKT-SEN 64

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPP 174
              ++GL  G  YL  V A +E G GP 
Sbjct: 65  RAELRGLKRGASYLVQVRARSEAGYGPF 92

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
            + P+    +++   +  L W  P          Y++        +   +     T+  +
Sbjct: 8   LEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLPGGITSHQL 63

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
            GL P   Y  R+ A        P +TS   TT G
Sbjct: 64  LGLFPSTSYNARLQAMWGQSLLPPVSTS--FTTGG 96

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 84  NITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC 143
           + +     P   L+  E+T  T  L W  P     ++   Y++            I    
Sbjct: 3   SGSSGLEAPRD-LEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQ-EILLPG 56

Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
             T+  + GL     Y   + A+    + PP+   
Sbjct: 57  GITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
               P      +V      L+W +P      R  GY +  H  G    Q + +     + 
Sbjct: 7   GLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQ-TQEILLP-GGITS 60

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
             +  L     Y  R+ A     L  P S S
Sbjct: 61  HQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 71.3 bits (174), Expect = 2e-14
 Identities = 29/209 (13%), Positives = 58/209 (27%), Gaps = 23/209 (11%)

Query: 95  PLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGL 153
           P +V          L W  P +  G     +  +     +    C+ TT   T      L
Sbjct: 5   PENVRMNSVNFKNILQWESPAFAKG--QLTFTAQYLSYRIFQDKCMQTT--LTECDFSSL 60

Query: 154 TEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKP 213
           ++  ++   V A   +     ++        SP D        +  +V  D +++ +  P
Sbjct: 61  SKYGDHTLRVRAEFADEHSDWVQ-----ITFSPVDDTIIGPPGMQVEVLADCLHMRFLAP 115

Query: 214 LDDGGSRIQ---------GYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
             +                Y +   + G+D   ++           + NL     Y  +V
Sbjct: 116 KIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITP---QYDFEVLRNLEPWTTYCVQV 172

Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAP 293
                   +     S  V  +       P
Sbjct: 173 RGFLP-DRNKAGEWSEPVCEQTTHDETVP 200

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITG 543
           PP+   +  + +    L W +P +  G     +  +   + +    +   T  T    + 
Sbjct: 4   PPENVRMNSV-NFKNILQWESPAFAKGQ--LTFTAQYLSYRIFQD-KCMQTTLTECDFSS 59

Query: 544 LSPGHQYEFRVYAENVYGRSDPSTTS 569
           LS    +  RV AE     SD    +
Sbjct: 60  LSKYGDHTLRVRAEFADEHSDWVQIT 85

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 12/126 (9%)

Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGH-DSLALVWRAPIWDGGS------ 511
            RV AE        +              P ++     D L + + AP  +         
Sbjct: 68  LRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTMK 127

Query: 512 ---NITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTT 568
              N   Y V+  +       ++   ++    +  L P   Y  +V    +  R+     
Sbjct: 128 NVYNSWTYNVQYWKQGTDEKFQI-TPQYDFEVLRNLEPWTTYCVQVRGF-LPDRNKAGEW 185

Query: 569 SDLITT 574
           S+ +  
Sbjct: 186 SEPVCE 191

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 73.4 bits (179), Expect = 2e-14
 Identities = 34/216 (15%), Positives = 59/216 (27%), Gaps = 16/216 (7%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH-----YVVE 127
           SS     +FT       GPP   L+  +       +H +P   D  +         Y + 
Sbjct: 86  SSWYEVDSFTPFRKAQIGPPEVHLEAED---KAIVIHISPGTKDSVMWALDGLSFTYSLV 142

Query: 128 RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPY 187
               S      I      +   +  L+    Y   V A                  K+  
Sbjct: 143 IWKNSSGVEERIENI--YSRHKIYKLSPETTYCLKVKAALLTSWKIG-VYSPVHCIKTTV 199

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ---GYWIDKHEVGSDAWQRVNVA-- 242
           +   PP   +   V      L WD    +   ++Q    +           W+++     
Sbjct: 200 ENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCEN 259

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
           +     +   N+ +   Y  RV A +    S  S  
Sbjct: 260 VKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEE 295

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 71.5 bits (174), Expect = 8e-14
 Identities = 36/223 (16%), Positives = 63/223 (28%), Gaps = 22/223 (9%)

Query: 95  PLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CISTTCHDTTFI 149
           P  V  +I      L WN      G     +  + +   M +WI    C + T     F 
Sbjct: 7   PQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFS 64

Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLS 209
              L   +E    + A  EN           + + +P+ K       V  +     + + 
Sbjct: 65  SLKLNVYEEIKLRIRAEKENTSSW-----YEVDSFTPFRKAQIGPPEVHLEAEDKAIVIH 119

Query: 210 WDKPLDDGGSR-----IQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
                 D            Y +   +  S   +R+       S+  I  L     Y  +V
Sbjct: 120 ISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIEN---IYSRHKIYKLSPETTYCLKV 176

Query: 265 YAQNEAG--LSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI 305
            A       + + S         +        I V ++N N +
Sbjct: 177 KAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV 219

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 26/228 (11%), Positives = 61/228 (26%), Gaps = 24/228 (10%)

Query: 366 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 425
           RA  +      + +           PP     A   + + +V+    +   K  + W  D
Sbjct: 79  RAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEA---EDKAIVIH--ISPGTKDSVMWALD 133

Query: 426 NEVIESGGHFHVETSERHAILTIRDASNVDT-----APYRVVAE------NDLGMDSAIV 474
                        +S     +    + +          Y +  +        +G+ S + 
Sbjct: 134 GLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVH 193

Query: 475 KIQI-SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNI---TNYIVEKREHPMSSWIR 530
            I+   +   PP       + + +  L W     +    +     ++     + +  W +
Sbjct: 194 CIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQ 253

Query: 531 VGNTRFTT----MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           + +         +    +     Y  RV A +    S  S      T 
Sbjct: 254 IPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTE 301

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 47.6 bits (112), Expect = 6e-06
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 8/137 (5%)

Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGH-DSLALVWRAP-----IWDGGSNI 513
           R+ AE +       V      R      P V       ++ +          +W      
Sbjct: 77  RIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLS 136

Query: 514 TNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
             Y +   ++      R+    ++   I  LSP   Y  +V A            S +  
Sbjct: 137 FTYSLVIWKNSSGVEERI-ENIYSRHKIYKLSPETTYCLKVKAAL-LTSWKIGVYSPVHC 194

Query: 574 TYGELLSGMEAPISLIT 590
               + + +  P ++  
Sbjct: 195 IKTTVENELPPPENIEV 211

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 18/112 (16%), Positives = 29/112 (25%), Gaps = 8/112 (7%)

Query: 72  NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKV---THYVVER 128
              G  S    I  T     P        +      L W+    +   +V     ++   
Sbjct: 184 WKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRN 243

Query: 129 RDISMPHWICISTTCHDTT----FIVQGLTEGQEYLFHVMAVNENGMGPPLE 176
               +  W  I   C +         Q + +   YL  V A + N      E
Sbjct: 244 PGNHLYKWKQIPD-CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSE 294

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 67.5 bits (165), Expect = 3e-14
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRF 536
                    +V +I   S  + W +        ++ + VE            + + +T  
Sbjct: 4   GSHLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTA- 58

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           T++ I  L PG +Y   VY  +  G      ++   T
Sbjct: 59  TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
           P           VT++      +SW    D     + G+ ++          +       
Sbjct: 2   PLGSHLVATSESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQYLDLPST 57

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
            + +NIP+L+ GR+Y   VY  +E G      +++ 
Sbjct: 58  ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQ 93

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW-ICISTTCHD 145
           G          V+EIT  +  + W          V+ + VE            +      
Sbjct: 4   GSHLVATS-ESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQYLDLPSTA 58

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI 181
           T+  +  L  G++Y+ +V  ++E+G    +   +  
Sbjct: 59  TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 94

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 67.4 bits (165), Expect = 3e-14
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 10/97 (10%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
            +I V   +   +       QC   G P P   W K    +T   +            ++
Sbjct: 4   LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------LYMV 54

Query: 353 NSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKF 388
             V       Y C   N      S K E+II      
Sbjct: 55  PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 13/101 (12%)

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
           +  +  V P    +     G  +V++    G P P   W+++   +         T E  
Sbjct: 2   SKLQICVEPT---SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THETK 49

Query: 444 AILTIRDASNVDTAPYRVVAENDLGM-DSAIVKIQISDRPD 483
            +  +          Y     ND    DS  V+I I +  +
Sbjct: 50  KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 90

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 9/97 (9%)

Query: 286 DPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEG 345
                +  +++V                C +   P P I W+K    +            
Sbjct: 4   GSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP------ 57

Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
               LI+  +   D   Y C A +          + I
Sbjct: 58  ---VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 14/103 (13%)

Query: 378 AELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV 437
           +    +   +  V P          G  V +       P P+I W +D   +        
Sbjct: 3   SGSSGLEEVQLVVEPE---GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---- 55

Query: 438 ETSERHAILTIRDASNVDTAPYRVVAENDLGM--DSAIVKIQI 478
                  +L + +    D   Y  VA +      +S  V I I
Sbjct: 56  -----SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 69.5 bits (170), Expect = 5e-14
 Identities = 25/193 (12%), Positives = 55/193 (28%), Gaps = 34/193 (17%)

Query: 303 NAIQNHNAQFQCTI--TGCPKPTISWLKGSREIT------------PSARHHIFAEGDTY 348
                 +                I W K S +                  + +F  G   
Sbjct: 10  WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG--- 66

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 408
           TL I  +   D D Y     +  G    +    +    K          ++     N  +
Sbjct: 67  TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL----KIQERVSKPKISW--TCINTTL 120

Query: 409 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
                    P++  Y+D +        H++ S+R   +     +   +A ++  A N + 
Sbjct: 121 TCEVMNGTDPELNLYQDGK--------HLKLSQR---VITHKWTTSLSAKFKCTAGNKVS 169

Query: 469 MDSAIVKIQISDR 481
            +S++  +   ++
Sbjct: 170 KESSVEPVSCPEK 182

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 13/97 (13%)

Query: 403 GENVVVKIPF--TGYPKPKITWYRDNEVIE----SGGHFHVETSERHAI-----LTIRDA 451
           G+++ + IP          I W + ++  +           +  + + +     L I+  
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 452 SNVDTAPYRVVAENDLGMDSAIVKIQIS--DRPDPPQ 486
              D   Y+V   +  G +       +   +R   P+
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK 110

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 6   YIPEGDNTK-VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG 64
                D+   +K     D+       K     +  D +K  +  +  +  IK ++ +D  
Sbjct: 23  SFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK--LFKNGTLK-IKHLKTDDQD 79

Query: 65  DYTVNLSNSSGSVSGTFTINITGLPGPP 92
            Y V++ ++ G        ++       
Sbjct: 80  IYKVSIYDTKGKNVLEKIFDLKIQERVS 107

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 67.4 bits (165), Expect = 5e-14
 Identities = 19/112 (16%), Positives = 29/112 (25%), Gaps = 9/112 (8%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
                 P   L  S+++     + W          V    V        H        + 
Sbjct: 4   GSSGLAPPRHLGFSDVSHDAARVFWEGAPRP----VRLVRVTYVSSEGGHSGQTEAPGNA 59

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPV 197
           T+ ++  L+    Y   V  +   G    L G    K       PSP   P 
Sbjct: 60  TSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTK-----KAPSPSSGPS 106

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 67.1 bits (164), Expect = 7e-14
 Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 11/96 (11%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV---GNTRFTT 538
             PP+     D+ HD+  + W          +    V           +    GN     
Sbjct: 8   LAPPRHLGFSDVSHDAARVFWEGA----PRPVRLVRVTYVSSEGGHSGQTEAPGNATSAM 63

Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
             +  LS    Y  RV      G S   T    +TT
Sbjct: 64  --LGPLSSSTTYTVRVTCLYPGGGSSTLTGR--VTT 95

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 5/90 (5%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
            +PP     + V  D   + W+         ++   +           +        +  
Sbjct: 8   LAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAP-GNATSA 62

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            +  L     Y  RV      G S   +  
Sbjct: 63  MLGPLSSSTTYTVRVTCLYPGGGSSTLTGR 92

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 70.3 bits (171), Expect = 6e-14
 Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 22/216 (10%)

Query: 85  ITGLPGPPIGPLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CI 139
           +  + G    P +++         L W PP+   G+KVT Y V+        W+    C 
Sbjct: 2   VPCVSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECR 60

Query: 140 STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT 199
           +          +      +Y   V A+         E            +  PP + + T
Sbjct: 61  NINRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLET--QIGPPEVALTT 118

Query: 200 QVGGDFVNLSWDKPLDDGGSRIQ----------GYWIDKHEVGSDAWQRVNVAICAPSQI 249
                 V L+  +        +            Y +      S+      V       +
Sbjct: 119 DEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNH---TL 175

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
            +  L     Y   V +    G    +  S     +
Sbjct: 176 VLTWLEPNTLYCVHVESFVP-GPPRRAQPSEKQCAR 210

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 7/95 (7%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---NTRFTTMA 540
            P   T   I +    L W  P          Y V+   +    W+      N   T   
Sbjct: 11  KPANITFLSI-NMKNVLQWTPPE-GLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCD 68

Query: 541 IT--GLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           ++       HQY  RV A      S  + +     
Sbjct: 69  LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYP 103

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 67.1 bits (164), Expect = 7e-14
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNT 534
            S    PP    +     DSL + W  P       + +Y +             + V   
Sbjct: 4   GSSGRSPPSNLALASETPDSLQVSWTPP----LGRVLHYWLTYAPASGLGPEKSVSVPGA 59

Query: 535 RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           R + + +  L    +Y   V A    GRS+  + +
Sbjct: 60  R-SHVTLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 85  ITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTC 143
            +    PP   L ++  T  +  + W PP   G  +V HY +     S       +S   
Sbjct: 4   GSSGRSPPSN-LALASETPDSLQVSWTPP--LG--RVLHYWLTYAPASGLGPEKSVSVPG 58

Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
             +   +  L    +Y   V A+   G    +   
Sbjct: 59  ARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
            SPP    +     D + +SW  P      R+  YW+          ++      A S +
Sbjct: 8   RSPPSNLALASETPDSLQVSWTPP----LGRVLHYWLTYAPASGLGPEKSVSVPGARSHV 63

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            +P+L    +Y   V A   AG S   SA+
Sbjct: 64  TLPDLQAATKYRVLVSAIYAAGRSEAVSAT 93

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 70.7 bits (172), Expect = 7e-14
 Identities = 34/236 (14%), Positives = 70/236 (29%), Gaps = 11/236 (4%)

Query: 343 AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDK 402
           A   T ++ + ++  V   E +   V    + + +A     T   ++        A  D 
Sbjct: 9   AAEVTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTL-NYDENAFEYVEAISDD 67

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGG----HFHVETSERHAILTIRDASNVDTAP 458
           G  V  K    G  +  ++      +             E     + L++ ++S  D   
Sbjct: 68  GVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEG 127

Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV 518
                       + I         +P +     +I   ++ + W  P    G  +  YI+
Sbjct: 128 LVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYIL 185

Query: 519 EKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            K        +       T+     L+    Y F++ A+   G      +  L T 
Sbjct: 186 YKDG----KKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTA 237

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 69.6 bits (169), Expect = 2e-13
 Identities = 23/176 (13%), Positives = 57/176 (32%), Gaps = 12/176 (6%)

Query: 9   EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTV 68
           + ++ KV++  +      +       + +     +     +   + +      D      
Sbjct: 75  KIEDGKVRVLVSSLTGEPL--PAKEVLAKV--VLRAEAKTEGSNLSVTNSSVGDGEGLVH 130

Query: 69  NLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128
            ++ +  +V+     +   +  P       SEI K   T+ W  P+   G  +  Y++ +
Sbjct: 131 EIAGTEKTVNIIEGTSPEIVVNPVR-DFKASEINKKNVTVTWTEPETTEG--LEGYILYK 187

Query: 129 RDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
               +           +T++  + L     Y F + A   NG     E +    A+
Sbjct: 188 DGKKV-----AEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 64.2 bits (155), Expect = 1e-11
 Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 23/217 (10%)

Query: 80  TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC- 138
              + I  L        D + +        +     D G+ V    +E   + +      
Sbjct: 31  EVGVGIDELVNAEAFAYDFT-LNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLT 89

Query: 139 -----ISTTCHDTTFIVQGLTEGQEYLFHVMAV-----NENGMGPPLEGINPIKAKSPYD 188
                            +  TEG        +V       + +    + +N I+  SP  
Sbjct: 90  GEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEI 149

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
             +P      +++    V ++W +P    G  ++GY + K        ++V       + 
Sbjct: 150 VVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYKD------GKKVAEIGKDETS 201

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
                L     Y F++ A+   G     S+  S+ ++
Sbjct: 202 YTFKKLNRHTIYNFKIAAKYSNG---EVSSKESLTLR 235

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 72.5 bits (177), Expect = 7e-14
 Identities = 28/181 (15%), Positives = 48/181 (26%), Gaps = 15/181 (8%)

Query: 91  PPIGPLDVSEITK--HTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICI-----STTC 143
           P     D+  +          W P      L   + +    +       C+         
Sbjct: 136 PETXVQDMDCVYYNWQYLLCSWKPGI-GVLLDTNYNLFYWYEGLDHALQCVDYIKADGQN 194

Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGG 203
               F     ++ +++   V   +EN           ++      KP PP     T+   
Sbjct: 195 IGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQN---IVKPLPPVYLTFTRESS 251

Query: 204 DFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFR 263
             + L W  PL    +R   Y I+  E  +                 +    E RQ  F 
Sbjct: 252 CEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTATVEN----ETYTLKTTNETRQLCFV 307

Query: 264 V 264
           V
Sbjct: 308 V 308

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 59.8 bits (144), Expect = 8e-10
 Identities = 37/241 (15%), Positives = 68/241 (28%), Gaps = 18/241 (7%)

Query: 66  YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK--VTH 123
           YT  +S + G    T + +      PP     V         L W PP      K     
Sbjct: 12  YTFLISTTFGC---TSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVE 68

Query: 124 YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA 183
           Y ++ R+I    W  I T  +        L +G E   H +   +   G  ++       
Sbjct: 69  YELKYRNIGSETWKTIITK-NLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETT 127

Query: 184 KSPYDKPSPPGIPVVTQ---VGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
                +  P               ++  SW   +         Y +     G D   +  
Sbjct: 128 YWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLD--TNYNLFYWYEGLDHALQCV 185

Query: 241 VAICAPS-----QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEI 295
             I A       +       + + +   V   +E       S+  + Q+++ +    P  
Sbjct: 186 DYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPI--RSSYFTFQLQNIVKPLPPVY 243

Query: 296 I 296
           +
Sbjct: 244 L 244

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 56.7 bits (136), Expect = 8e-09
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 6/109 (5%)

Query: 460 RVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNY 516
            V   ++           ++Q   +P PP + T        + L W  P+    +   +Y
Sbjct: 213 CVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDY 272

Query: 517 IVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRV-YAENVYGRSD 564
            +E RE   +           T  +   +   Q  F V    N+Y   D
Sbjct: 273 EIEIREDDTTLVTATVEN--ETYTLKTTNETRQLCFVVRSKVNIYCSDD 319

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 6/130 (4%)

Query: 459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDS-LALVWRAP-IWDGGSNIT-N 515
           Y  +     G  S+        + +PPQ   + D G+   L L W+ P   D     T  
Sbjct: 12  YTFLISTTFGCTSSSDTEI---KVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVE 68

Query: 516 YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTY 575
           Y ++ R     +W  +            L+ G +                  +S   TTY
Sbjct: 69  YELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTY 128

Query: 576 GELLSGMEAP 585
                G+   
Sbjct: 129 WISPQGIPET 138

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 67  TVNLSNSSGSV-SGTFTINITGL--PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
            VN S+ +  + S  FT  +  +  P PP+  L  +  +     L W+ P      +   
Sbjct: 213 CVNGSSENKPIRSSYFTFQLQNIVKPLPPVY-LTFTRESSCEIKLKWSIPLGPIPARCFD 271

Query: 124 YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV 163
           Y +E R+         + T  + T+ ++   E ++  F V
Sbjct: 272 YEIEIREDDTTLV---TATVENETYTLKTTNETRQLCFVV 308

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 69.8 bits (170), Expect = 9e-14
 Identities = 27/200 (13%), Positives = 43/200 (21%), Gaps = 20/200 (10%)

Query: 85  ITGLPGPPIGPLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CI 139
                     P  V  +       L W P +   G   + Y V+ +      W     C 
Sbjct: 2   TQSTHESLK-PQRVQFQSRNFHNILQWQPGRALTGN-SSVYFVQYKIYGQRQWKNKEDCW 59

Query: 140 STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT 199
            T         +     + Y   V A +                     K  PP + +  
Sbjct: 60  GTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWET--KIDPPVMNITQ 117

Query: 200 QVGGDFVNLSW---------DKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
             G   V L           +K +         Y +       +  Q+V         + 
Sbjct: 118 VNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAH--RAVE 175

Query: 251 IPNLIEGRQYEFRVYAQNEA 270
           I  L     Y          
Sbjct: 176 IEALTPHSSYCVVAEIYQPM 195

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 7/100 (7%)

Query: 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---NTRFT 537
               PQ    +     ++ L W  P      N + Y V+ + +    W        T+  
Sbjct: 7   ESLKPQRVQFQSRNFHNI-LQW-QPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQEL 64

Query: 538 TMAIT--GLSPGHQYEFRVYAENVYGRSDPSTTSDLITTY 575
           +  +T         Y  RV A +    S+ S T      +
Sbjct: 65  SCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWW 104

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
           G         P   ++  D P P G    +++    + +SW +P +  G  + GY I   
Sbjct: 1   GSSGSSG---PQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWE 56

Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           E      +  +       +  +  L     Y   V A    G    S+++
Sbjct: 57  EYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 7/109 (6%)

Query: 468 GMDSAIVKIQ-ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS 526
              S    ++   D P P    +  +I   SL + W+ P    G  +T Y +   E+  +
Sbjct: 3   SGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRT 61

Query: 527 SW--IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYG---RSDPSTTSD 570
           +               +TGL+    Y   V A    G    S  + +S 
Sbjct: 62  NTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSG 110

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
            +PGP  G L  SEI   +  + W  P    G  +T Y +   + +  +        + T
Sbjct: 16  DVPGPV-GHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVT 73

Query: 147 T-FIVQGLTEGQEYLFHVMAVNENGMGPP 174
             + V GLT    Y   V A+   G G  
Sbjct: 74  LEYRVTGLTALTTYTIEVAAMTSKGQGQV 102

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 66.0 bits (161), Expect = 1e-13
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 6/102 (5%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCH 144
           +  P PP   L ++ +T  T  L W P         THY+V     S             
Sbjct: 5   SSGPLPPPRALTLAAVTPRTVHLTWQPSA-----GATHYLVRCSPASPKGEEEEREVQVG 59

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
               ++ GL  G++Y   V ++                   P
Sbjct: 60  RPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGP 101

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR-----VGNTRF 536
             PP+  T+  +   ++ L W+       +  T+Y+V                 VG    
Sbjct: 9   LPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEV 63

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
               + GL PG  YE  V +      S+     
Sbjct: 64  L---LDGLEPGRDYEVSVQSLRGPEGSEARGIR 93

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 5/98 (5%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
             PP    +  V    V+L+W        +    Y +          +          ++
Sbjct: 9   LPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEV 63

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
            +  L  GR YE  V +      S             P
Sbjct: 64  LLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGP 101

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 4/96 (4%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN---YIVEKREHPMSSW-IRVGNTRFT 537
             PP       + HD++ + W           +    Y V  R    +S   +  +T   
Sbjct: 19  MLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSL 78

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           +   TGL P   YEF V        S  S T+   T
Sbjct: 79  SYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATT 114

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 4/106 (3%)

Query: 72  NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT---HYVVER 128
           +S  S   T   +++    PP+G +    +T     + W         K +    Y V  
Sbjct: 2   SSGSSGFPTSVPDLSTPMLPPVG-VQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60

Query: 129 RDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
           R          S      ++   GL     Y F VM          
Sbjct: 61  RTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTW 106

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 17/109 (15%), Positives = 24/109 (22%), Gaps = 4/109 (3%)

Query: 172 GPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSR---IQGYWIDK 228
           G       P           PP       +  D V +SW         +   ++ Y +  
Sbjct: 1   GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60

Query: 229 HEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
               S    +               L     YEF V        S  S 
Sbjct: 61  RTSFSA-SAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSM 108

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 6/100 (6%)

Query: 183 AKSPYDKPSPPGIPVVTQVGGD--FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
             S    P  P    ++        +   W  P+   G  I+ Y ++    GS  W    
Sbjct: 1   GSSGSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQR 59

Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
            A    +   I NL+    Y  RV A    G+   S + +
Sbjct: 60  AA---SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKS 96

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 64.8 bits (158), Expect = 4e-13
 Identities = 24/100 (24%), Positives = 30/100 (30%), Gaps = 4/100 (4%)

Query: 479 SDRPDPPQFPTV--EDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRF 536
           S  PD P+   +         +   W  PI   G  I  YIVE        W        
Sbjct: 5   SSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQ-RAAS 62

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
               I  L     Y  RV A    G  + S +  + T  G
Sbjct: 63  NFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKG 102

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 9/108 (8%)

Query: 87  GLPGPPIGP-LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
             P  P    L +    +     HW PP +  G  +  Y+VE        W         
Sbjct: 6   SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQRAA--S 62

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
               ++ L     Y   V AV   G+G      +     +   K S P
Sbjct: 63  NFTEIKNLLVNTLYTVRVAAVTSRGIGNW---SDSKSITTI--KGSGP 105

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 7/128 (5%)

Query: 167 NENGMGPPLEGINPIKAKSPYDKPSPPGIP--VVTQVGGDFVNLSWDKPLDDGGSRIQGY 224
           +    GP  + ++    +S  D+   P +P  +  +     + +SW  P +     ++GY
Sbjct: 2   SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNI-VVRGY 60

Query: 225 WIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQI 284
            I        A               I NL     Y   + A N  G  +P   S   + 
Sbjct: 61  AIGYGIGSPHAQTIKVDY--KQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRP 118

Query: 285 KD--PMAA 290
               P + 
Sbjct: 119 HTSGPSSG 126

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 2/93 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
           P+ P    V  +   S+ + W  P  +    +  Y +        +     + +     I
Sbjct: 28  PEVPSSLHVRPLV-TSIVVSWTPPE-NQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTI 85

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
             L P   Y   + A N  G   P   S +   
Sbjct: 86  ENLDPSSHYVITLKAFNNVGEGIPLYESAVTRP 118

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 59.4 bits (144), Expect = 6e-11
 Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 6/103 (5%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P  P            +  + W PP+      V  Y +       PH   I        +
Sbjct: 28  PEVPSSL--HVRPLVTSIVVSWTPPENQNI-VVRGYAIGYGI-GSPHAQTIKVDYKQRYY 83

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
            ++ L     Y+  + A N  G G PL        +     PS
Sbjct: 84  TIENLDPSSHYVITLKAFNNVGEGIPLY--ESAVTRPHTSGPS 124

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 287 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 346
           P  A+   + V + +         Q +C +      +I+WL+   ++  S R  I  E  
Sbjct: 4   PEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGE-- 60

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
              + +      D+  Y C   +  G  +T   + +
Sbjct: 61  --EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 384 TAPKFNVPPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS 440
           T P+   P       ++     G+ + ++          I W RD   +       +   
Sbjct: 2   TLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE 60

Query: 441 ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
                + +RD+   D+  Y  V  +  G D+    + +S
Sbjct: 61  ----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 49.4 bits (118), Expect = 8e-08
 Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 20 AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG 79
            D    ++  ++G  +   +R +  +  + + +  ++    D+G Y    S+ SGS + 
Sbjct: 33 LRDDVQSINWLRDGVQLVESNRTR--ITGEEVEV--RDSIPADSGLYACVTSSPSGSDTT 88

Query: 80 TFTINIT 86
           F++N++
Sbjct: 89 YFSVNVS 95

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 65.2 bits (159), Expect = 3e-13
 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTT 538
              P    V      SL + W AP     S++  Y +   E   +S      V  +  +T
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAP--MSSSSVYYYRITYGETGGNSPVQEFTVPYSS-ST 61

Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTY 575
             I+GLSPG  Y   VYA            S +   Y
Sbjct: 62  ATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINY 98

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
            S P    V       + +SWD P+      +  Y I   E G ++  +      + S  
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNSPVQEFTVPYSSSTA 62

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            I  L  G  Y   VYA  E         S
Sbjct: 63  TISGLSPGVDYTITVYAWGEDSAGYMFMYS 92

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCH 144
           + +   P   L+V   T  +  + W+ P       V +Y +   +      +   +    
Sbjct: 2   SSVSSVPTK-LEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNSPVQEFTVPYS 58

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLE 176
            +T  + GL+ G +Y   V A  E+  G    
Sbjct: 59  SSTATISGLSPGVDYTITVYAWGEDSAGYMFM 90

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 65.2 bits (159), Expect = 3e-13
 Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTT 538
              P    V D    SL + W A       N+  Y +   E    S      V     +T
Sbjct: 8   SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYY-ST 65

Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
             I+GL PG  Y   VYA + +       +   I  
Sbjct: 66  ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINY 101

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
            S P    V       + +SWD         ++ Y I   E G D+  +        S  
Sbjct: 8   SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYSTA 66

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
            I  L  G  Y   VYA +        ++  S+  +
Sbjct: 67  TISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
           + +   P   L+V + T  +  + W+         V +Y +   +      +   T    
Sbjct: 5   SSVSSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGY 62

Query: 146 -TTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
            +T  + GL  G +Y   V A +    G  
Sbjct: 63  YSTATISGLKPGVDYTITVYAYDTFFPGYE 92

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTR 535
               D P    V      SL + W AP       +  Y +   E   +S      V  ++
Sbjct: 26  GSVSDVPTKLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPGSK 81

Query: 536 FTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            +T  I+GL PG  Y   VYA          +    I 
Sbjct: 82  -STATISGLKPGVDYTITVYAVTGLRLMLAGSKPISIN 118

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 64.5 bits (157), Expect = 7e-13
 Identities = 23/127 (18%), Positives = 35/127 (27%), Gaps = 11/127 (8%)

Query: 157 QEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDD 216
             +  H     ++                       P    V       + +SWD P   
Sbjct: 3   HHHHHHSSDYKDDDDKGEN-------LYFQGSVSDVPTKLEVVAATPTSLLISWDAP--- 52

Query: 217 GGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
               ++ Y I   E G ++  +      + S   I  L  G  Y   VYA     L L  
Sbjct: 53  -AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111

Query: 277 SASNSVQ 283
           S   S+ 
Sbjct: 112 SKPISIN 118

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 57.6 bits (139), Expect = 2e-10
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 78  SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI 137
            G        +   P   L+V   T  +  + W+ P     + V +Y +   +      +
Sbjct: 18  KGENLYFQGSVSDVPTK-LEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPV 72

Query: 138 -CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
              +     +T  + GL  G +Y   V AV    +   
Sbjct: 73  QEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLA 110

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 70.4 bits (171), Expect = 4e-13
 Identities = 39/226 (17%), Positives = 66/226 (29%), Gaps = 19/226 (8%)

Query: 72  NSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH---YVVER 128
              G  S    I  T     P        +      L W+    +   +V     ++   
Sbjct: 188 WKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRN 247

Query: 129 RDISMPHWICISTTCHDTT---FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKS 185
               +  W  I    +  T      Q + +   YL  V A + N      E I       
Sbjct: 248 PGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQ 307

Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ-----GYWIDKHEVGSDAWQRVN 240
                 PP   +  +   D  ++    P   G + +       Y I   E  S+A +++ 
Sbjct: 308 A--FLLPPVFNI--RSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKII 363

Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA-SNSVQIK 285
                 + + +PNL     Y  +  A         SS  S++V  K
Sbjct: 364 E---KKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEK 406

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 65.4 bits (158), Expect = 2e-11
 Identities = 45/386 (11%), Positives = 103/386 (26%), Gaps = 33/386 (8%)

Query: 208 LSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ---INIPNLIEGRQYEFRV 264
           L W++  +  G+    +  D  + G D W +++      S     +   L    + + R+
Sbjct: 25  LRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRI 82

Query: 265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPT 323
            A+ E   S      +S           PE+ +   +   + + +   + ++       +
Sbjct: 83  RAEKE-NTSSWYE-VDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLS 140

Query: 324 ISWLKGSREITPSARHHIFAEGDTYT---LIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
            ++     + +      I      +    L   + Y +     +  +   G         
Sbjct: 141 FTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIK 200

Query: 381 IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS 440
             +       PP             V+           ++ W         G H +    
Sbjct: 201 TTVENEL---PPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQ 257

Query: 441 ERHAILTIRDASNV-----DTAPY--RVVAENDLGM-DSAIVKIQISDRPDPPQFPTVED 492
                                  Y  RV A +       +      ++       P    
Sbjct: 258 IPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNI 317

Query: 493 IGH-DSLALVWRAPIWDGGSNITN-----YIVEKREHPMSSWIRVGNTRFTTMAITGLSP 546
               DS  +   AP   G + +       Y +   E+  ++  ++   + T + +  L P
Sbjct: 318 RSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEKK-TDVTVPNLKP 376

Query: 547 GHQYEFRVYAENVYGR----SDPSTT 568
              Y  +  A  +  +    S  S  
Sbjct: 377 LTVYCVKARAHTMDEKLNKSSVFSDA 402

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 64.6 bits (156), Expect = 3e-11
 Identities = 31/204 (15%), Positives = 51/204 (25%), Gaps = 10/204 (4%)

Query: 95  PLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CISTTCHDTTFI 149
           P  V  +I      L WN      G     +  + +   M +WI    C + T     F 
Sbjct: 11  PQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFS 68

Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLS 209
              L   +E    + A  EN              K+    P          +       +
Sbjct: 69  SLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGT 128

Query: 210 WDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNE 269
            D  +         Y +   +  S   +R+       S+  I  L     Y  +V A   
Sbjct: 129 KDSVMWALDGLSFTYSLVIWKNSSGVEERIEN---IYSRHKIYKLSPETTYCLKVKAALL 185

Query: 270 AGLSLPSSASNSVQIKDPMAAKAP 293
               +   +              P
Sbjct: 186 TSWKIGVYSPVHCIKTTVENELPP 209

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 61.9 bits (149), Expect = 2e-10
 Identities = 31/212 (14%), Positives = 59/212 (27%), Gaps = 10/212 (4%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHW--NPPKYDGGLKVTHYVVERRD 130
           SS     +FT       GPP   L+  +            +   +        Y +    
Sbjct: 90  SSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWK 149

Query: 131 ISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKP 190
            S      I      +   +  L+    Y   V A         +         +  ++ 
Sbjct: 150 NSSGVEERIENIY--SRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENEL 207

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ---GYWIDKHEVGSDAWQRVNVA--ICA 245
            PP    V+    ++V L WD    +   ++Q    +           W+++     +  
Sbjct: 208 PPPENIEVSVQNQNYV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKT 266

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
              +   N+ +   Y  RV A +    S  S 
Sbjct: 267 TQCVFPQNVFQKGIYLLRVQASDGNNTSFWSE 298

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 30/266 (11%), Positives = 66/266 (24%), Gaps = 22/266 (8%)

Query: 325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR--AVNKGGVKSTKAELII 382
                   I  S   +I +    ++ +  +VY     E   R  A  +      + +   
Sbjct: 44  QKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYE----EIKLRIRAEKENTSSWYEVDSFT 99

Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK---PKITWYRDNEVIESGGHFHVET 439
                   PP     A  DK   + +              +++     + ++        
Sbjct: 100 PFRKAQIGPPEVHLEA-EDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERI 158

Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLG-----MDSAIVKIQISDRPDPPQFPTVEDIG 494
              ++   I   S   T   +V A                     +   PP       + 
Sbjct: 159 ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQ 218

Query: 495 HDSLALVWRAPIWDGGSNIT---NYIVEKREHPMSSWIRVGNTRFTT----MAITGLSPG 547
           + +  L W     +    +     ++     + +  W ++ +         +    +   
Sbjct: 219 NQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQK 278

Query: 548 HQYEFRVYAENVYGRSDPSTTSDLIT 573
             Y  RV A +    S  S      T
Sbjct: 279 GIYLLRVQASDGNNTSFWSEEIKFDT 304

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 64.8 bits (158), Expect = 6e-13
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 6/106 (5%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
           + +P  P           +   + W PP       V  Y++       P+   +      
Sbjct: 15  SQVPDQPSSL--HVRPQTNCIIMSWTPPLNPNI-VVRGYIIGYGV-GSPYAETVRVDSKQ 70

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
             + ++ L     Y+  + A N  G G PL        +S    PS
Sbjct: 71  RYYSIERLESSSHYVISLKAFNNAGEGVPLY--ESATTRSITSGPS 114

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 64.4 bits (157), Expect = 8e-13
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTT 538
           S  PD P    V     + + + W  P+ +    +  YI+        +     +++   
Sbjct: 15  SQVPDQPSSLHVRP-QTNCIIMSWTPPL-NPNIVVRGYIIGYGVGSPYAETVRVDSKQRY 72

Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            +I  L     Y   + A N  G   P   S    +
Sbjct: 73  YSIERLESSSHYVISLKAFNNAGEGVPLYESATTRS 108

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 7/110 (6%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
           G         P         P  P    V     + + +SW  PL+     ++GY I  +
Sbjct: 1   GSSGSSG---PENDLDESQVPDQPSSLHVR-PQTNCIIMSWTPPLNPNI-VVRGYII-GY 54

Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            VGS   + V V        +I  L     Y   + A N AG  +P   S
Sbjct: 55  GVGSPYAETVRVDS-KQRYYSIERLESSSHYVISLKAFNNAGEGVPLYES 103

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 68.8 bits (167), Expect = 7e-13
 Identities = 27/220 (12%), Positives = 63/220 (28%), Gaps = 24/220 (10%)

Query: 66  YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYV 125
            + N S     +         G P   +  L             W P + +      + +
Sbjct: 74  CSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGR-NTSPDTNYTL 132

Query: 126 VERRDISMPHWICISTTCHDTT----FIVQGLTEG--QEYLFHVMAVNENGMGPPLEGIN 179
                       C +           F +  + +   +++   +M  +  G   P   I 
Sbjct: 133 YYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIV 192

Query: 180 PIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239
           P+   +   KP PP I  ++    D + + W+ P +     +  Y ++ +   ++     
Sbjct: 193 PL---TSRVKPDPPHIKNLSFHNDD-LYVQWENPQNFISRCLF-YEVEVNNSQTETHNVF 247

Query: 240 NV------------AICAPSQINIPNLIEGRQYEFRVYAQ 267
            V             +   S   +P ++       R+  +
Sbjct: 248 YVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVK 287

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 60.7 bits (146), Expect = 3e-10
 Identities = 28/220 (12%), Positives = 50/220 (22%), Gaps = 12/220 (5%)

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIV 150
           PP+  L VS     T    WNPP+         Y     D                  I 
Sbjct: 5   PPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKK-----IAPETRRSIE 59

Query: 151 QGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSW 210
             L E             N    P   +    +    D  S             ++  SW
Sbjct: 60  VPLNERICLQVGSQCST-NESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSW 118

Query: 211 DKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS----QINIPNLIEGRQYEFRVYA 266
               +   S    Y +       +   +               ++  + +    +  V  
Sbjct: 119 LPGRN--TSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQI 176

Query: 267 QNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 306
             +        + N V +   +    P I     + + + 
Sbjct: 177 MVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLY 216

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 18/142 (12%)

Query: 446 LTIRDASNVDTAPYRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVW 502
           LT    S+ +    +++ +++ G       IV +    +PDPP    +    +D L + W
Sbjct: 161 LTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQW 219

Query: 503 RAP-------------IWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQ 549
             P             + +  +   N    +     +          +   + G+ P   
Sbjct: 220 ENPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTL 279

Query: 550 YEFRVYA-ENVYGRSDPSTTSD 570
              R+    N     D    S+
Sbjct: 280 NTVRIRVKTNKLCYEDDKLWSN 301

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 8/91 (8%), Positives = 16/91 (17%), Gaps = 4/91 (4%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITG 543
           P    +V      ++   W  P         N  +    H      +             
Sbjct: 6   PVTNLSVSVENLCTVIWTWNPPEGASS----NCSLWYFSHFGDKQDKKIAPETRRSIEVP 61

Query: 544 LSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           L+     +                    I+ 
Sbjct: 62  LNERICLQVGSQCSTNESEKPSILVEKCISP 92

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 66.9 bits (163), Expect = 8e-13
 Identities = 32/229 (13%), Positives = 61/229 (26%), Gaps = 48/229 (20%)

Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKP-----TISWLKGSREI--------------- 333
            + VP          N   +C      +       + W    + I               
Sbjct: 3   TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62

Query: 334 TPSARHHIFAEGDTY---TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNV 390
           +   R  +  +  +     L I  V   DA  Y C  ++ GG    +  + +        
Sbjct: 63  SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCM-ISYGGADYKRITVKVNAPYNKIN 121

Query: 391 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG-----------GHFHVET 439
                            +     GYPK ++ W   +  + SG             F+V +
Sbjct: 122 QRILVVD---PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTS 178

Query: 440 SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP--DPPQ 486
           +     L I   +N     +          ++   ++ I + P   PP 
Sbjct: 179 T-----LRINTTTNEI---FYCTFRRLDPEENHTAELVIPELPLAHPPN 219

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 3/105 (2%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
                I              +  C   G PK  + W     ++         ++ +    
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174

Query: 351 IINSVYGV---DADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
            + S   +     + + C        ++  AEL+I   P  + P 
Sbjct: 175 NVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPN 219

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 63.5 bits (154), Expect = 1e-12
 Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 12/99 (12%)

Query: 296 IVPLRNANAIQNHNAQFQCTITGCP---KPTISWLKG---------SREITPSARHHIFA 343
           ++  ++       +  F   + G      P + W KG          + +     +   +
Sbjct: 8   VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRAS 67

Query: 344 EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           +   + L I          Y C    K     +   L +
Sbjct: 68  KVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 12/90 (13%)

Query: 403 GENVVVKIPFTGYP---KPKITWYRDNEV---IESGGHFHVETSERHAI------LTIRD 450
           G ++       G      P + W++   V    + G H  +  S   A       L I D
Sbjct: 19  GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITD 78

Query: 451 ASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
           A    T  YR         D +   + + +
Sbjct: 79  AQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 12/97 (12%)

Query: 2   PNALYIPEGDNTKVKIFYAGD---QPMEVS---------LTKNGRVVQSDDRFKFTVLDD 49
           P    +  G +       AG    +P  V           +K G+ +Q  D +       
Sbjct: 11  PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70

Query: 50  YIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 86
              + I + +    G Y   +S         F + + 
Sbjct: 71  LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 289 AAKAPEIIV-PLRNANAIQNHNAQFQCT-ITGCPKPTISWLKGSREITPSARHHIFAEGD 346
            +K   + V   R+ +     +  F CT  +  P  T+ W +      PS    +   G 
Sbjct: 6   PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--RAMDFNG- 62

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
              L I +V   DA  YVC   N   +    A L +
Sbjct: 63  --ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 7/102 (6%)

Query: 378 AELIIMTAPKFNVPPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFH 436
           A L   + P        R  +    G +V       +  P   + W R +      G   
Sbjct: 1   APLAAPSKPIMVTVEEQRSQS-VRPGADVTFICTAKSKSPAYTLVWTRLH-----NGKLP 54

Query: 437 VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
               + + ILTIR+    D   Y     N   MD     + +
Sbjct: 55  SRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV---EKREHPMSSWIRVGNTRF 536
             P        E  G  S++L+W+ P    G  I  Y +   EK +   S       T  
Sbjct: 9   AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTR 67

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            T  ++GL PG +Y F+V A    G    S   ++ T 
Sbjct: 68  AT--VSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETG 103

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 61.2 bits (149), Expect = 8e-12
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
             S    PS   +    + G   V+L W +P    G  I  Y I  +E   +      + 
Sbjct: 4   GSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLK 62

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
                   +  L  G +Y F+V A+  AG    S A
Sbjct: 63  AVTTR-ATVSGLKPGTRYVFQVRARTSAGCGRFSQA 97

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 61.2 bits (149), Expect = 8e-12
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 84  NITGLPGPPIGPLDVS--EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST 141
           + +     P   + +      + + +L W  P+   G+ +  Y ++  +         + 
Sbjct: 3   SGSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGI-ILEYEIKYYEKDKEMQSYSTL 61

Query: 142 TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
               T   V GL  G  Y+F V A    G G   +    ++ ++   KPS P
Sbjct: 62  KAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQ---AMEVETG--KPSGP 108

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI-RVGNTRFT 537
           S  P              S+ L W  P    G  I +Y +   E   + +   +  ++  
Sbjct: 5   SSGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTN 63

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           T  I GL PG  Y  +V A  V G    S      T 
Sbjct: 64  TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTL 100

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 59.0 bits (143), Expect = 4e-11
 Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 5/106 (4%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P      +     T  + TL W  P+   G+ +  Y +   +     +          T 
Sbjct: 8   PSTV-PIMHQVSATMRSITLSWPQPEQPNGI-ILDYEIRYYEKEHNEFNSSMARSQTNTA 65

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
            + GL  G  Y+  V A    G G        +  ++  D     G
Sbjct: 66  RIDGLRPGMVYVVQVRARTVAGYGKF---SGKMCFQTLTDSGPSSG 108

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
             S    PS   I          + LSW +P    G  I  Y I  +E   + +      
Sbjct: 1   GSSGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMA- 58

Query: 243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
               +   I  L  G  Y  +V A+  AG       S  +  +
Sbjct: 59  RSQTNTARIDGLRPGMVYVVQVRARTVAG---YGKFSGKMCFQ 98

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTT 538
              P    V      SL + W A      S+++ Y +   E   +S      V  +  +T
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQEFTVPGSS-ST 59

Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
             I+GLSPG  Y   VYA   Y     S +   I  
Sbjct: 60  ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINY 95

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 4/96 (4%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
            S P    V       + +SWD       S +  Y I   E G ++  +      + S  
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQEFTVPGSSSTA 60

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
            I  L  G  Y   VYA         S + +S+  +
Sbjct: 61  TISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCH 144
           + +   P   L+V   T  +  + W+         V++Y +   +      +   +    
Sbjct: 2   SSVSSVPTK-LEVVAATPTSLLISWDAS--SS--SVSYYRITYGETGGNSPVQEFTVPGS 56

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
            +T  + GL+ G +Y   V A         
Sbjct: 57  SSTATISGLSPGVDYTITVYAYYSYYDLYY 86

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 63.1 bits (153), Expect = 9e-12
 Identities = 22/171 (12%), Positives = 47/171 (27%), Gaps = 30/171 (17%)

Query: 320 PKPTISWLKGSREIT----------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 369
               + W +GS  +            S    I        L I ++   D+  Y     +
Sbjct: 26  DIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL---ANGDLKIKNLTRDDSGTYNVTVYS 82

Query: 370 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 429
             G +     L +      + P  + +        N  +          ++  Y+  E +
Sbjct: 83  TNGTRILNKALDLRILEMVSKPMIYWE------CSNATLTCEVLEGTDVELKLYQGKEHL 136

Query: 430 ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
            S               T+        AP++  A N +  +S +  +   +
Sbjct: 137 RSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCPE 176

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 13/119 (10%), Positives = 34/119 (28%), Gaps = 22/119 (18%)

Query: 262 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 321
           + V   +  G       + ++ ++       P I          +  NA   C +     
Sbjct: 76  YNVTVYSTNG---TRILNKALDLRILEMVSKPMIYW--------ECSNATLTCEVLEGTD 124

Query: 322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 380
             +   +G   +    +             ++  +      + C+AVN+   +S    +
Sbjct: 125 VELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 172

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 26  EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
            V+  K            F +L +  +  IK + ++D+G Y V + +++G+      +++
Sbjct: 38  LVAEFKRKMKPFLKSG-AFEILANGDLK-IKNLTRDDSGTYNVTVYSTNGTRILNKALDL 95

Query: 86  TGLPGPPIGPLDVSEITKH-TCTLHWNPP 113
             L       +         TC +     
Sbjct: 96  RILEMVSKPMIYWECSNATLTCEVLEGTD 124

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 403 GENVVVKIPF--TGYPKPKITWYRDNEVIES--GGHFHVETSERHAI-----LTIRDASN 453
           G  + + IP         ++ W R + ++            S    I     L I++ + 
Sbjct: 11  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 454 VDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 486
            D+  Y V   +  G       + +       +
Sbjct: 71  DDSGTYNVTVYSTNGTRILNKALDLRILEMVSK 103

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 64.5 bits (156), Expect = 9e-12
 Identities = 34/238 (14%), Positives = 53/238 (22%), Gaps = 61/238 (25%)

Query: 295 IIVPLRNANAIQNHNAQFQCTIT---GCPKPTISWLKGSREITPSA-------------- 337
           +               +  C+         P ISWLKG+     +               
Sbjct: 5   VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64

Query: 338 ----------------RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK------GGVKS 375
                           R  +       TL +  V+  D   Y C+          G    
Sbjct: 65  FVESDSYKESFGDFLGRASVANLAA-PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 123

Query: 376 TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF 435
           +    +    P  NV     +    D+G ++ +  P T      +TWY      E+    
Sbjct: 124 SVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG 183

Query: 436 HVETSERHAI---------------------LTIRDASNVDTAPYRVVAENDLGMDSA 472
             +                            L IR A   D            G   A
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDA 241

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 61.5 bits (148), Expect = 1e-10
 Identities = 19/168 (11%), Positives = 39/168 (23%), Gaps = 22/168 (13%)

Query: 238 RVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK-DPMAAKAPEII 296
           R +VA  A   + + ++       +       +  +     + SV +K           +
Sbjct: 81  RASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHV 140

Query: 297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI--------------- 341
                    + ++    C  T C    ++W  G                           
Sbjct: 141 STAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFS 200

Query: 342 ------FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
                  +      L+I +    DA    C      G         I+
Sbjct: 201 SEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL 248

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 63.2 bits (153), Expect = 1e-11
 Identities = 21/187 (11%), Positives = 54/187 (28%), Gaps = 16/187 (8%)

Query: 105 TCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC---ISTTCHDTTFIVQGLTEGQEYLF 161
            CT  W          +T +   +   +     C   + +    +   +Q         F
Sbjct: 16  NCT--WQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTF 73

Query: 162 HVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRI 221
            V   +          +  +        P  P    + ++    + L+W+       +  
Sbjct: 74  VVQLQDPREPRRQATQMLKL---QNLVIPWAPENLTLHKLSESQLELNWNNRF---LNHC 127

Query: 222 QGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLS---LPSSA 278
             + +        +W   +V      + ++P++   ++Y FRV ++           S  
Sbjct: 128 LEHLVQYRTDWDHSWTEQSVDY--RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEW 185

Query: 279 SNSVQIK 285
           S+ +   
Sbjct: 186 SHPIHWG 192

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 447 TIRDASNVDTAPYRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWR 503
            ++         + V  ++        + ++K+Q    P  P+  T+  +    L L W 
Sbjct: 61  QLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN 120

Query: 504 APIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRS 563
                  ++   ++V+ R     SW           ++  +    +Y FRV +       
Sbjct: 121 NRFL---NHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCG 177

Query: 564 DPSTTSD 570
                S+
Sbjct: 178 SAQHWSE 184

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 63.5 bits (154), Expect = 1e-11
 Identities = 33/194 (17%), Positives = 54/194 (27%), Gaps = 17/194 (8%)

Query: 105 TCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT----TFIVQGLTEGQEYL 160
           TC   W              + +   +      CI             ++  +     Y 
Sbjct: 18  TCE--WKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYT 75

Query: 161 FHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSR 220
             + A  +       +    +K       P  PG   V     D + L+W  P       
Sbjct: 76  LDLWAGQQLLWKGSFKPSEHVK-------PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYL 128

Query: 221 IQG--YWID-KHEVGSDAWQRVNVAICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
                Y ++   E     ++  NV    PS +I    L  G  Y  RV A  +A  +  S
Sbjct: 129 YNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWS 188

Query: 277 SASNSVQIKDPMAA 290
             S S +  +    
Sbjct: 189 EWSPSTKWHNSYRE 202

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 66  YTVNL-SNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP---KYDGGLKV 121
           YT++L +       G+F  +    P  P   L V      T  L W+ P          +
Sbjct: 74  YTLDLWAGQQLLWKGSFKPSEHVKPRAPGN-LTVHTNVSDTLLLTWSNPYPPDNYLYNHL 132

Query: 122 THYVVERRDISMPHWICISTTCHDTT--FIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
           T+ V    +     +   + T  + +       L  G  Y   V A  +       E   
Sbjct: 133 TYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSP 192

Query: 180 PIKAKSPYDKP 190
             K  + Y +P
Sbjct: 193 STKWHNSYREP 203

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 28/134 (20%), Positives = 40/134 (29%), Gaps = 7/134 (5%)

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAP 505
           L + D  + D     + A   L       K     +P  P   TV     D+L L W  P
Sbjct: 63  LLMDDVVSADNYTLDLWAGQQLLWKG-SFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNP 121

Query: 506 IWDGGSNITN--YIVEKREHPMSSWIRVGNTRF----TTMAITGLSPGHQYEFRVYAENV 559
                    +  Y V        +  R+ N  +      +A + L  G  Y  RV A   
Sbjct: 122 YPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQ 181

Query: 560 YGRSDPSTTSDLIT 573
              +  S  S    
Sbjct: 182 AYNTTWSEWSPSTK 195

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 64.0 bits (155), Expect = 1e-11
 Identities = 33/211 (15%), Positives = 54/211 (25%), Gaps = 22/211 (10%)

Query: 91  PPIGPLDVSEITK--HTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTT- 147
              GP ++   T+        W       G+    Y    +    P  +C          
Sbjct: 20  AARGPEELLCFTERLEDLVCFWEEAA-SAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARG 78

Query: 148 -------FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQ 200
                        +        V A +       +  IN +           P   V   
Sbjct: 79  AVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEV------VLLDAPVGLVARL 132

Query: 201 VG-GDFVNLSWDKPLDDGGSRIQGYWI-DKHEVGSDAWQRVNVAICAPSQINIPNLIEGR 258
                 V L W  P +   +    Y +      G+ + QRV +         + NL    
Sbjct: 133 ADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTE-CVLSNLRGRT 191

Query: 259 QYEFRVYAQ--NEAGLSLPSSASNSVQIKDP 287
           +Y F V A+    +     S  S  V +  P
Sbjct: 192 RYTFAVRARMAEPSFGGFWSEWSEPVSLLTP 222

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 56.3 bits (135), Expect = 4e-09
 Identities = 17/98 (17%), Positives = 26/98 (26%), Gaps = 1/98 (1%)

Query: 67  TVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVV 126
            V  ++ +        IN   L   P+G +           L W PP          Y V
Sbjct: 100 RVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEV 159

Query: 127 E-RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV 163
           +            +      T  ++  L     Y F V
Sbjct: 160 DVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAV 197

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 4/114 (3%)

Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIG-HDSLALVWRAPIWDGGSNITNYIV 518
           RV A +       ++ I      D P             + L W  P     ++   Y V
Sbjct: 100 RVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEV 159

Query: 519 E-KREHPMSSWIRVGNT-RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
           +        S  RV      T   ++ L    +Y F V A  +   S     S+
Sbjct: 160 DVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA-RMAEPSFGGFWSE 212

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 63.0 bits (152), Expect = 1e-11
 Identities = 21/176 (11%), Positives = 38/176 (21%), Gaps = 29/176 (16%)

Query: 318 GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV---- 373
                 I+W K  + I                  + S        Y C+           
Sbjct: 26  DAEAKNITWFKDGKMIGFLTED-------KKKWNLGSNAKDPRGMYQCKGSQNKSKPLQV 78

Query: 374 --------KSTKAELIIMTAPKFNVPPRFRD-TAYFDKGENVVVKIPFTG---------Y 415
                    + K       A K +      D             K+  +G         Y
Sbjct: 79  YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY 138

Query: 416 PKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS 471
           P  +I W  +++ I          S+   +     +    +  Y          D+
Sbjct: 139 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 56.1 bits (134), Expect = 3e-09
 Identities = 10/105 (9%), Positives = 21/105 (20%), Gaps = 2/105 (1%)

Query: 272 LSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR 331
                +  +  +       +    I       +I        C     P   I W    +
Sbjct: 93  AKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDK 150

Query: 332 EITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST 376
            I            + +  +        +  YVC         + 
Sbjct: 151 NIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 195

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 11/71 (15%), Positives = 22/71 (30%)

Query: 12  NTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS 71
            T V +        E+    N + +  D+  K    D+  +   +    E +G Y     
Sbjct: 128 GTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187

Query: 72  NSSGSVSGTFT 82
            S    +  + 
Sbjct: 188 GSKPEDANFYL 198

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 64.1 bits (155), Expect = 2e-11
 Identities = 24/253 (9%), Positives = 51/253 (20%), Gaps = 60/253 (23%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTIT---GCPKPTISWLKGSREITPSARHHIFAEGDTY- 348
           P + V           +    C +          + WL    +   S     +    +  
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 349 -------------------TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 389
                              +L++  V   D   Y C    K      K  + +       
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW------ 119

Query: 390 VPPRFRDTAYFDKGENVVVKIPFTGYPKP---KITWYRDN-------------------- 426
           V P          G+   ++       +    K+ W   +                    
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179

Query: 427 ----EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
                   +      + S     + ++     D   Y              + + +    
Sbjct: 180 FQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239

Query: 483 ----DPPQFPTVE 491
                 P  PT +
Sbjct: 240 FQRTISPTPPTDK 252

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA---RHHIFAEGDT 347
           +A       +     + H  QF C   G P P I WL   + +  +    R  +F +G  
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-- 441

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            TL +      D   Y+C A N GG  S  A L +
Sbjct: 442 -TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI---ESGGHFHVETSER 442
            +  +  R     + D+G  V       G P P I W    + +   +S G   V     
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-- 440

Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
              L +R A   D   Y  +A N  G DS    + + 
Sbjct: 441 -GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVS-LTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
              +++ EG   +      GD P  +  L+    +V +    + TV  D  +  ++  + 
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLE-VRYAQV 450

Query: 61  EDAGDYTVNLSNSSGSVSGTFTINIT 86
           +D G Y    +N+ G+ S    +++ 
Sbjct: 451 QDNGTYLCIAANAGGNDSMPAHLHVR 476

>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor complex, immune system; 2.52A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R Length = 214

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 25/174 (14%), Positives = 45/174 (25%), Gaps = 20/174 (11%)

Query: 107 TLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CISTTCHDTTFIVQGLTEGQEYLFH 162
            LHW P         T Y V      +  W     C  T  +D T +   L     Y   
Sbjct: 21  ILHWTPIPQQSE--STCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRAR 78

Query: 163 VMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGG---- 218
           V AV+ +                     +   + +    G     +   +P         
Sbjct: 79  VRAVDGSRHSQWTVTNTRFSVDEV--TLTVGSVNLEIHNGFILGKIQLPRPKMAPAQDTY 136

Query: 219 SRIQGYWID-----KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ 267
             I  ++ +     +   G   +    V      Q ++    E  ++  +V   
Sbjct: 137 ESIFSHFREYEIAIRKVPGQFTFTHKKVKHE---QFSLLTSGEVGEFCVQVKPS 187

>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor complex, immune system; 2.52A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R Length = 214

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 500 LVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFT----TMAITGLSPGHQYEFRV 554
           L W        S  T Y V    + + SW  +   ++      T     L   + Y  RV
Sbjct: 22  LHWTPI--PQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARV 79

Query: 555 YAENVYGRSDPSTTSDLIT 573
            A +    S  + T+   +
Sbjct: 80  RAVDGSRHSQWTVTNTRFS 98

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 86  TGLPGPPIGPLDVS----EITKHTCTLHWNPPKYDGGLKVTHYVVE-RRDISMPH--WIC 138
           +G  GP   P D++    E       + W PP    G K+T Y++    D ++P   WI 
Sbjct: 3   SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIM 61

Query: 139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
            + +    T  +  L     Y F + A N  G+GP 
Sbjct: 62  ETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPL 97

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 482 PDPPQFPTVEDI--GHDSLALVWRAPIWDGGSNITNYIVE---KREHPMSSWIRV---GN 533
              P+  TV        ++ + W+ P+   G  IT YI+     +  P+  WI     G+
Sbjct: 9   TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67

Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                  I  L+    Y FR+ A N  G    S      T 
Sbjct: 68  RLTHQ--IMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTL 106

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 190 PSPPGIPVVTQVGG--DFVNLSWDKPLDDGGSRIQGYWI---DKHEVGSDAWQRVNVAIC 244
            S P    V    G    V +SW  PL+  G +I  Y +       +  D W    ++  
Sbjct: 9   TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISG- 66

Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
                 I +L     Y FR+ A+N  G       S+ +  +
Sbjct: 67  DRLTHQIMDLNLDTMYYFRIQARNSKG---VGPLSDPILFR 104

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 59.1 bits (143), Expect = 5e-11
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN---YIVEKREH-PMSSWIRVGNTRFT 537
             PP       + HD++ + W          IT+   Y V  + + P ++  +  N    
Sbjct: 9   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           +  +TGL P   YEF V        S  S T+   T 
Sbjct: 69  SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF 105

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 8/114 (7%)

Query: 86  TGLPGPPIGPLDV--SEITKHTCTLHWNPP---KYDGGLKVTHYVVERRDISMPHWICIS 140
           +G  GP + P+ V  S ++  T  + W      K+       +Y V  +     +    +
Sbjct: 3   SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62

Query: 141 TTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
                 +++V GL     Y F VM                    +        G
Sbjct: 63  ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSM---TAHGTTFELSGPSSG 113

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 5/97 (5%)

Query: 185 SPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDGGSRI---QGYWIDKHEVGSDAWQRVN 240
           S    P  PP     + +  D + ++W         +I   + Y +          +   
Sbjct: 3   SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK-YK 61

Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
            A        +  L     YEF V        S  S 
Sbjct: 62  NANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSM 98

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI----TPSARHHIFAEGDTY 348
           P I+ P  + N  +   A+ +C  +     ++SW+  +  +        R  + ++G   
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG--- 397

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
           TL   +V   D   Y C   N  G  +  A L +    
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 7/106 (6%)

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
            AP    PP         +G    +K   +      ++W   N  + + G + V  +   
Sbjct: 340 YAPVIVEPPA---DLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLS 395

Query: 444 A-ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP 488
              L   + +  DT  Y  +  N +G  +A   + ++         
Sbjct: 396 DGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT--GTHHHHH 439

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 20  AGDQPMEVS-LTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 77
           A      VS +T NG V+     + +  VL D  +     +  +D G YT  +SNS G+ 
Sbjct: 365 ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN-FTNVTVQDTGMYTCMVSNSVGNT 423

Query: 78  SGTFTINITGLPGPP 92
           + + T+N+TG     
Sbjct: 424 TASATLNVTGTHHHH 438

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 61.4 bits (148), Expect = 8e-11
 Identities = 33/232 (14%), Positives = 66/232 (28%), Gaps = 16/232 (6%)

Query: 67  TVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVV 126
              LS +  S+        T   G P      S   + T + HW    + G        +
Sbjct: 8   AAILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSP-ERETFSCHWTDEVHHGTKNEGPIQL 66

Query: 127 ERRDISMPHWICISTTCHDT--------TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
                +   W      C D          F     +    Y   + +             
Sbjct: 67  FYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVD 126

Query: 179 NPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLD---DGGSRIQGYWIDKHEVGSDA 235
             ++   P           +T +  D + + W+ P +     G  +  Y +   EV    
Sbjct: 127 EIVQPDPPIALNWTLLNVSLTGIHAD-IQVRWEAPRNADIQKGWMVLEYELQYKEVNETK 185

Query: 236 WQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
           W+ ++      + + + +L   ++YE RV ++           S  + +  P
Sbjct: 186 WKMMDP--ILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEFSEVLYVTLP 234

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDI------GHDSLALVWRAPIW---DGG 510
           ++ +      D     +    +PDPP       +       H  + + W AP       G
Sbjct: 110 KLTSNGGTV-DEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKG 168

Query: 511 SNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYA 556
             +  Y ++ +E   + W  +     T++ +  L    +YE RV +
Sbjct: 169 WMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRS 214

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTT 538
            D P+   V      SL + W +       +   Y +   E   +S      V      T
Sbjct: 4   SDVPRDLEVVAATPTSLLISWDSG----RGSYQYYRITYGETGGNSPVQEFTVPGPV-HT 58

Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
             I+GL PG  Y   VYA   +        +
Sbjct: 59  ATISGLKPGVDYTITVYAVTDHKPHADGPHT 89

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 11/111 (9%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHD 145
           G+   P   L+V   T  +  + W+  +        +Y +   +      +   +     
Sbjct: 2   GVSDVPRD-LEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPV 56

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINP-----IKAKSPYDKPS 191
            T  + GL  G +Y   V AV ++                I  ++  DKPS
Sbjct: 57  HTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPS 107

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 4/90 (4%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
              P    V       + +SWD          Q Y I   E G ++  +           
Sbjct: 4   SDVPRDLEVVAATPTSLLISWDSG----RGSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            I  L  G  Y   VYA  +         +
Sbjct: 60  TISGLKPGVDYTITVYAVTDHKPHADGPHT 89

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI----TPSARHHIFAEGDT 347
           AP I+   R+ N  +   A+ +C     P  ++ WL  +  +    +   R  +  +G  
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG-- 407

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
            TL  + V   D   Y C   N  G  +  A L + TA 
Sbjct: 408 -TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 20/107 (18%), Positives = 30/107 (28%), Gaps = 8/107 (7%)

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
           +AP     PR        +G    +K      P   + W   N  + S    H   S  +
Sbjct: 351 SAPFIMDAPR---DLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLN 405

Query: 444 A-ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP--DPPQF 487
              L        DT  Y  +  N  G  +A   + +S          
Sbjct: 406 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHHH 452

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVS-LTKNGRVVQSDDRF-KFTVLDDYIIIFIKEIR 59
           P  L I EG   ++K          V  L  NG V+    R  + +VL+D  +     + 
Sbjct: 359 PRDLNISEGRMAELKC--RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL-NFSHVL 415

Query: 60  KEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
             D G YT  ++N +G+ + +  +N++   
Sbjct: 416 LSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 60.1 bits (145), Expect = 2e-10
 Identities = 26/173 (15%), Positives = 47/173 (27%), Gaps = 21/173 (12%)

Query: 107 TLHWNPPKYDGGLKVTHYVVE-----RRDISMPHWICISTTCHDTTF----IVQGLTEGQ 157
            L W+P    G     +Y VE         +   WI  S  C  T      +   +T   
Sbjct: 23  LLMWSPVIAPGE--TVYYSVEYQGEYESLYTSHIWIPSSW-CSLTEGPECDVTDDITATV 79

Query: 158 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 217
            Y   V A   +         +P          + PG+ +        + L    P    
Sbjct: 80  PYNLRVRATLGSQTSAWSILKHPFN--RQSTILTRPGMEITKDGFHLVIELEDLGP---- 133

Query: 218 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEA 270
                 + +        A + V +       +++  +  G  Y  +     +A
Sbjct: 134 ---QFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKA 183

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 4/124 (3%)

Query: 460 RVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE 519
           RV A       +  +     +R          +I  D   LV       G          
Sbjct: 84  RVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHLVIELE-DLGPQFEFLVAYW 142

Query: 520 KREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDL--ITTYGE 577
           +RE      +++  +    + +  + PG  Y  +     V      S  S    +   GE
Sbjct: 143 RREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTF-VKAIGRYSAFSQTECVEVQGE 201

Query: 578 LLSG 581
            + G
Sbjct: 202 AIEG 205

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 12/99 (12%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE-----KREHPMSSWIRVG---NTR 535
            PQ  +V    +    L+W             Y VE     +  +    WI       T 
Sbjct: 9   APQQLSVLST-NMKHLLMWSPV--IAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTE 65

Query: 536 FTTMAIT-GLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
                +T  ++    Y  RV A      S  S       
Sbjct: 66  GPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFN 104

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 11/101 (10%), Positives = 24/101 (23%), Gaps = 1/101 (0%)

Query: 298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYG 357
                 A        +C         +     + ++     +   +  +   L    V  
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310

Query: 358 VDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTA 398
            D   Y C A+ +   ++   EL +               A
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAA 351

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 388 FNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILT 447
           FN             G+ + ++         K+     NE + S G  +   S R+  L 
Sbjct: 246 FNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGS-NGSVSVRNGDLF 304

Query: 448 IRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
            +     D   Y   A  +   ++  V++++ +        T+ 
Sbjct: 305 FKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLN 348

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 2   PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
            +A     GD   ++         +V ++ +   V S        + +  + F K+++ E
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDL-FFKKVQVE 311

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYD 116
           D G YT      + + + +  + +                T +     W+ P+++
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVYNFTLHG------HHDTLNAAADPWSHPQFE 360

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 56.9 bits (137), Expect = 3e-10
 Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 14/98 (14%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRF----- 536
                  +V D+   SL L W AP         ++++       S+              
Sbjct: 9   RPRLSQLSVTDVTTSSLRLNWEAPPGA----FDSFLLRFGVPSPSTLEPHPRPLLQRELM 64

Query: 537 -----TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
                 +  +  L  G  Y   +Y      ++D    +
Sbjct: 65  VPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 102

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 56.1 bits (135), Expect = 5e-10
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 5/98 (5%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCH- 144
           +    P +  L V+++T  +  L+W  P       +  + V       PH   +      
Sbjct: 5   SSGSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELM 64

Query: 145 ----DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
                 + +++ L  G  Y   +  +        ++G 
Sbjct: 65  VPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 102

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 4/94 (4%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDK----HEVGSDAWQRVNVAICA 245
                   VT V    + L+W+ P     S +  + +              QR  +    
Sbjct: 9   RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
                + +L  G  Y   +Y       +     +
Sbjct: 69  RHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 102

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 56.7 bits (136), Expect = 4e-10
 Identities = 15/108 (13%), Positives = 23/108 (21%), Gaps = 10/108 (9%)

Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISW----------LKGSREITPSARHHIFAEG 345
           + P               CT        I +           K         +     + 
Sbjct: 12  LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71

Query: 346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR 393
              TL I+ V   D   Y C A +    K     + +   P       
Sbjct: 72  FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSG 119

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 10/91 (10%)

Query: 402 KGENVVVKIPFTGYPKPKITWYRDNE----------VIESGGHFHVETSERHAILTIRDA 451
            GE +V+           I +  +              +       E  +  + LTI   
Sbjct: 22  VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 81

Query: 452 SNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
           +  D   Y   A + L        +++ ++P
Sbjct: 82  TRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 9/118 (7%)

Query: 163 VMAVNENGMGPPLEGINPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDG--GS 219
             + N  G G   +    I   +  D PS PP    +  V    + +SW  P      G 
Sbjct: 4   GSSGNRYGPGVSTD---DITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG- 59

Query: 220 RIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
            I GY I +H   +   +   +       +    L +G QY F+V A    G   PS+
Sbjct: 60  FITGYKI-RHRKTTRRGEMETLEPNNLWYL-FTGLEKGSQYSFQVSAMTVNGTGPPSN 115

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 461 VVAENDLGM--DSAIVKIQ-ISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSN--IT 514
             + N  G    +  + +  +SD P  PPQ  ++E +   S+ + W  P      N  IT
Sbjct: 4   GSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGT-QNGFIT 62

Query: 515 NYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            Y +  R+      +            TGL  G QY F+V A  V G   PS      T
Sbjct: 63  GYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET 121

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 67  TVNLSNSSGSVSGTFTINITGLPGPPIGP---LDVSEITKHTCTLHWNPPKYDG--GLKV 121
           + +  N  G    T  I +  L   P  P   + +  +   +  + W PP      G  +
Sbjct: 3   SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG-FI 61

Query: 122 THYVVE-RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
           T Y +  R+         +     +  ++  GL +G +Y F V A+  NG GPP
Sbjct: 62  TGYKIRHRKTTRRGEMETLEPN--NLWYLFTGLEKGSQYSFQVSAMTVNGTGPP 113

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 59.0 bits (142), Expect = 4e-10
 Identities = 30/203 (14%), Positives = 51/203 (25%), Gaps = 21/203 (10%)

Query: 105 TCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC---------ISTTCHDTTFIVQGLTE 155
           +C   W+          +  V    D       C          +          Q LT 
Sbjct: 19  SCV--WSQDGALQD--TSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTT 74

Query: 156 GQEYLFHVMAVNENG-MGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPL 214
                  V+           ++   P +      +   P    V  V     N+SW+   
Sbjct: 75  VDIVTLRVLCREGVRWRVMAIQDFKPFE----NLRLMAPISLQVVHVETHRCNISWEISQ 130

Query: 215 DDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ--INIPNLIEGRQYEFRVYAQNEAGL 272
                     +  +       W+   +      Q  I +  L    QYEF+V  +   G 
Sbjct: 131 ASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGE 190

Query: 273 S-LPSSASNSVQIKDPMAAKAPE 294
               S  S  +  +   AA   +
Sbjct: 191 FTTWSPWSQPLAFRTKPAALGKD 213

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 19/123 (15%), Positives = 31/123 (25%), Gaps = 10/123 (8%)

Query: 461 VVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAP-IWDGGSNITNYIVE 519
                   M     K   + R   P    V  +      + W              +   
Sbjct: 85  REGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEAR 144

Query: 520 KREHPMSSWIRVGNT----RFTTMAITGLSPGHQYEFRVYAENVYGR----SDPSTTSDL 571
               P  +W          +   + +  L+P  QYEF+V  + + G     S  S     
Sbjct: 145 TLS-PGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAF 203

Query: 572 ITT 574
            T 
Sbjct: 204 RTK 206

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 59.2 bits (142), Expect = 2e-09
 Identities = 20/171 (11%), Positives = 50/171 (29%), Gaps = 10/171 (5%)

Query: 107 TLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAV 166
           +  W   K +    V+  +  +        + +              +    +   +   
Sbjct: 235 SCSWEVRK-EVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVP 293

Query: 167 NENGMGPPLEGINPIKAKSPYD-----KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRI 221
           +    G  +  + P +A+         + +PP + V     GD  +L W+          
Sbjct: 294 DPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVT--KDGDSYSLRWETMKMRYEHID 351

Query: 222 QGYWIDKHEVGSDAWQRVNVAICAPSQ-INIPNLIEGRQYEFRVYAQNEAG 271
             + I ++   +  W+         +  + +P L    +Y  RV  +    
Sbjct: 352 HTFEI-QYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRT 401

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 56.2 bits (134), Expect = 1e-08
 Identities = 31/244 (12%), Positives = 62/244 (25%), Gaps = 16/244 (6%)

Query: 67  TVNLSNSSGSVSGTFTINITGLPGPPIGPLDVS-EITKHTCTLHWNPP------KYDGGL 119
               S       GT           P  P D+     +    L W+         +    
Sbjct: 84  VDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPG 143

Query: 120 KVTHYVVERR-DISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
            +   VV +R   S      + +     T   + L     Y+  V      G        
Sbjct: 144 DLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPS 203

Query: 179 NPIKAKSPYDKPSPPGIPVVTQV---GGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA 235
                     +P     P   +    G   ++ SW+   +   S   G +  K    + +
Sbjct: 204 KWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFY-KPSPDAGS 262

Query: 236 WQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEI 295
              +    C+P  +         ++  ++   + A          SVQ +         +
Sbjct: 263 AVLLREEECSP-VLREGLGSLHTRHHCQIPVPDPAT---HGQYIVSVQPRRAEKHIKSSV 318

Query: 296 IVPL 299
            + +
Sbjct: 319 NIQM 322

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 52.3 bits (124), Expect = 2e-07
 Identities = 45/313 (14%), Positives = 83/313 (26%), Gaps = 28/313 (8%)

Query: 105 TCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFH-- 162
             T  W   +    L     +    +  +    C  +     +         +  +    
Sbjct: 18  HITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQ 77

Query: 163 --VMAVNENGMGPPLE--GINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGG 218
             V+   +     P    G       + + +P  P    ++     F  L+W   L    
Sbjct: 78  SFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHF-LLTWSVALGSPQ 136

Query: 219 SRIQGYWIDKHEV----GSDAWQRVNVAICAPSQ--INIPNLIEGRQYEFRVYAQNEAG- 271
           S        + EV      D+W+   + +   SQ  +   +L+    Y  RV  +   G 
Sbjct: 137 SHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGS 196

Query: 272 --LSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ-----------NHNAQFQCTITG 318
                PS  S  V        +A    +      A               +  F      
Sbjct: 197 RLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKP 256

Query: 319 CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 378
            P    + L    E +P  R  + +    +   I         +Y+     +   K  K+
Sbjct: 257 SPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKS 316

Query: 379 ELII-MTAPKFNV 390
            + I M  P   V
Sbjct: 317 SVNIQMAPPSLQV 329

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 469 MDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW 528
                +K  ++ +  PP     +D   DS +L W             + ++ R+   +  
Sbjct: 309 RAEKHIKSSVNIQMAPPSLQVTKD--GDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWK 366

Query: 529 IRVGNT--RFTTMAITGLSPGHQYEFRVYAENVYGRSD 564
                T     +MA+  L P  +Y  RV         +
Sbjct: 367 DSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYN 404

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 48.8 bits (115), Expect = 3e-06
 Identities = 25/146 (17%), Positives = 41/146 (28%), Gaps = 10/146 (6%)

Query: 433 GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED 492
              H     R  ++  +     D   +    +  LG    +   Q   +P  P+   +  
Sbjct: 61  ACPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQ-HVQPPEPRDLQIST 119

Query: 493 IGHDSLALVWRAPIWDGGSNITN-----YIVEKREHPMSSW---IRVGNTRFTTMAITGL 544
              D   L W   +    S+  +     + V  +    S     I + NT   T+    L
Sbjct: 120 DQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHL 178

Query: 545 SPGHQYEFRVYAENVYGRSDPSTTSD 570
            P   Y  RV      G       S 
Sbjct: 179 MPSSTYVARVRTRLAPGSRLSGRPSK 204

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 8/114 (7%)

Query: 64  GDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH 123
           G Y V++           ++NI     PP   L V++    + +L W   K         
Sbjct: 299 GQYIVSVQPRRAEKHIKSSVNIQ--MAPP--SLQVTK-DGDSYSLRWETMKMRYEHIDHT 353

Query: 124 YVVE-RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV--MAVNENGMGPP 174
           + ++ R+D +        T  +  +  +  L     Y   V          G  
Sbjct: 354 FEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIW 407

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKP--TISWLKGSREI---TPSARHHIFAEGD- 346
           P+I V     +AI   +  F C+         T +W   +  +         H+ A+G  
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 347 ----TYTLIINSVYGVDADEYVCRAVNKGG-VKSTKAELII 382
               T  L + +V       Y C   N  G   S  A L I
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 35/211 (16%), Positives = 59/211 (27%), Gaps = 38/211 (18%)

Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITP----------------- 335
            + VP      ++  +    CT TG      + W    R                     
Sbjct: 3   RLSVP-PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTM 61

Query: 336 ---SARHHIFAEGDTYTLIINSVYGVDADEYVCRA-VNKGGVKSTKAELIIMTAPKF-NV 390
                R   +       L++      D  +YVC       G     A L +   P+   V
Sbjct: 62  HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEV 121

Query: 391 PPRFRDTAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVI----ESGGHFHVETSER--- 442
            P     +  +     +       G P PKITWYR+ + +    E     ++ +      
Sbjct: 122 SPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREA 181

Query: 443 ------HAILTIRDASNVDTAPYRVVAENDL 467
                  + L +R   +   A +   A   L
Sbjct: 182 SGLLSLTSTLYLRLRKDDRDASFHCAAHYSL 212

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 58.4 bits (140), Expect = 2e-09
 Identities = 37/272 (13%), Positives = 81/272 (29%), Gaps = 32/272 (11%)

Query: 8   PEGDNTKVKIFY------AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
           P+ +   V + Y        +   E  +T++  V      F  +V        ++     
Sbjct: 36  PDQEQRNVNLEYQVKINAPKEDDYETRITESKAVTILHMGFSASVRT-----ILQNDHSL 90

Query: 62  DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKV 121
            A  +     ++     GT  +N+T                + +    W         + 
Sbjct: 91  LASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGT--DAPED 148

Query: 122 THYVVERRDIS----MPHWIC----ISTTCH-DTTFIVQGLTEGQEYLFHVMAVNENGMG 172
           T Y +  R  S       +       +  C    TFI+            V   +++   
Sbjct: 149 TQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSKGR--DWLAVLVNGSSKHSAI 206

Query: 173 PPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG 232
            P + +  +      D+ +PP        G   +++ W+KP+         Y +  H   
Sbjct: 207 RPFDQLFAL---HAIDQINPPLNVTAEIEGTR-MSIQWEKPVSAFPIHCFDYEVKIHNTR 262

Query: 233 SDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
           +   Q   +     +   I  + +  +Y+ +V
Sbjct: 263 NGYLQIEKL----MTNAFISIIDDLSKYDVQV 290

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 459 YRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN 515
             V   +          +  +   D+ +PP   T E I    +++ W  P+     +  +
Sbjct: 195 VLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVTAE-IEGTRMSIQWEKPVSAFPIHCFD 253

Query: 516 YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRV 554
           Y V+                 T   I+ +    +Y+ +V
Sbjct: 254 YEVKIHNTRNGYLQIEKLM--TNAFISIIDDLSKYDVQV 290

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 11/143 (7%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ-GYWIDKHEVGSDAWQRVNVAICAPS 247
              PP    +   G   V L W    D     +   Y +  +    D ++          
Sbjct: 11  SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRIT-----E 65

Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 307
              +  L  G     R   QN    SL +S+  S ++  P        IV L        
Sbjct: 66  SKAVTILHMGFSASVRTILQN--DHSLLASSWASAELHAP-PGSPGTSIVNLT--CTTNT 120

Query: 308 HNAQFQCTITGCPKPTISWLKGS 330
               +    +       +W+ G+
Sbjct: 121 TEDNYSRLRSYQVSLHCTWMVGT 143

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 34/195 (17%), Positives = 61/195 (31%), Gaps = 28/195 (14%)

Query: 105 TCTLHWNPPK----YDGGLKVTHY-------VVERRDISMPHWICISTTCHDTTFIVQGL 153
           TC   W+        +  L++ ++        +           C   +      I Q +
Sbjct: 19  TCR--WSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPI 76

Query: 154 TEGQEYLFHVMAVNENGMG--PPLEGINPIKAKSPYDKPSPPGIPVVTQVGG-DFVNLSW 210
                Y   +   +  G    PP   + P        KP PP             + +SW
Sbjct: 77  FLLSGYTMWIRINHSLGSLDSPPTC-VLPDS----VVKPLPPSSVKAEITINIGLLKISW 131

Query: 211 DKPLDDGGS---RIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ 267
           +KP+    +   +I+ Y +   EV    W+   V       +++P       Y  +V  +
Sbjct: 132 EKPVFPENNLQFQIR-YGLSGKEVQ---WKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCK 187

Query: 268 NEAGLSLPSSASNSV 282
              GL   S+ SN  
Sbjct: 188 RLDGLGYWSNWSNPA 202

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 49.7 bits (118), Expect = 6e-07
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 459 YRVVAENDLG-MDSAIVKIQISD--RPDPPQFPTVEDIGHDS-LALVWRAPIWDGGSNIT 514
             +   + LG +DS    +      +P PP     E   +   L + W  P++    N  
Sbjct: 84  MWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVF--PENNL 141

Query: 515 NYIVE-KREHPMSSW--IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR------SDP 565
            + +          W    V + +  ++++        Y  +V  + + G       S+P
Sbjct: 142 QFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNP 201

Query: 566 STT 568
           + T
Sbjct: 202 AYT 204

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 5/112 (4%)

Query: 66  YTVNLSNSSGSVS---GTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT 122
             + +++S GS+         +    P PP        I      + W  P +     + 
Sbjct: 84  MWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPEN-NLQ 142

Query: 123 HYVVERRDISMPHWICISTT-CHDTTFIVQGLTEGQEYLFHVMAVNENGMGP 173
             +          W           +  +        Y   V     +G+G 
Sbjct: 143 FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGY 194

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 291 KAPEIIVPL-RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF------- 342
           K  +   PL +N   ++   A   C +      ++ W   +++                 
Sbjct: 4   KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63

Query: 343 --AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
             A     ++ ++ V   D  +Y C  +    VK++KA L ++  P
Sbjct: 64  VRASWHELSISVSDVSLSDEGQYTCS-LFTMPVKTSKAYLTVLGVP 108

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 53.1 bits (127), Expect = 8e-09
 Identities = 11/104 (10%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE--------ITPSARHHI-FA 343
             +          +      +C  +     ++ WL  S          +  ++++ +   
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 344 EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
             +  ++ + +V   D   Y C       V + + ++I++   K
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCL-HYSDSVSTKEVKVIVLATMK 104

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS----------ARH 339
           +    ++  L +       +A F   ++   + T  W     E+  +           R+
Sbjct: 6   SGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRY 63

Query: 340 HIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
            I  +G  + LI+++V   D+   V    +  GV+ + A L I  + 
Sbjct: 64  RIEQKGLQHRLILHAVKHQDSGALVG--FSCPGVQDS-AALTIQESS 107

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 5/98 (5%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWD-GGSNITNYIVEKREH---PMSSWIRVG-NTRF 536
              P     + +   ++ L W         + I  + +  R       S + +       
Sbjct: 9   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
              +I+ L P   Y+ ++   N  G S+ S      T 
Sbjct: 69  YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETK 106

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDK-PLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
            + P I     V    + L W   P  +  + I G++I      SD        +    +
Sbjct: 9   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68

Query: 249 --INIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
              +I +L     Y+ ++   NE G S  S+ 
Sbjct: 69  YWHSISHLQPETSYDIKMQCFNEGGESEFSNV 100

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 9/115 (7%)

Query: 86  TGLPGPPIGPLDVS--EITKHTCTLHWN-PPKYDGGLKVTHYVVERRDIS---MPHWICI 139
           +G  GP  GP       + + T  L W   P  +    +  + +  R         +   
Sbjct: 3   SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62

Query: 140 STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
                     +  L     Y   +   NE G          +  ++        G
Sbjct: 63  MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSN---VMICETKARSGPSSG 114

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 15/93 (16%), Positives = 21/93 (22%), Gaps = 3/93 (3%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
                   +       L L W            +Y +            V   R     +
Sbjct: 10  SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVL---L 66

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           T L P   Y  RV      G    S   +  T+
Sbjct: 67  TKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS 99

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 11/89 (12%), Positives = 22/89 (24%), Gaps = 4/89 (4%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
           +G        L + +       L W   +         Y +   +        +      
Sbjct: 6   SGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEP--- 62

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
              ++  L     Y+  V  +   G GP 
Sbjct: 63  -RVLLTKLQPDTTYIVRVRTLTPLGPGPF 90

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 9/97 (9%)

Query: 190 PSPPGIPV-VTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
            S  G+ + + +     + L+W             Y +       +  Q V        +
Sbjct: 9   ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVL-----EPR 63

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
           + +  L     Y  RV      G   P   S   + +
Sbjct: 64  VLLTKLQPDTTYIVRVRTLTPLG---PGPFSPDHEFR 97

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
           P  P           S+ L W A        +T Y V       +          TT  I
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTAS--TDNVGVTGYDVY------NGTALATTVTGTTATI 55

Query: 542 TGLSPGHQYEFRVYAENVYG-RSDPSTT 568
           +GL+    Y F V A++  G  S  S  
Sbjct: 56  SGLAADTSYTFTVKAKDAAGNVSAASNA 83

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           P+ P     T      + LSW    D+ G  + GY     +V +             +  
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGY-----DVYNGT---ALATTVTGTTA 53

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
            I  L     Y F V A++ AG    S+ASN+V +K
Sbjct: 54  TISGLAADTSYTFTVKAKDAAGNV--SAASNAVSVK 87

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P  P   L  +  T  + TL W     + G  VT Y V             +TT   TT 
Sbjct: 4   PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDVYNGTAL-------ATTVTGTTA 53

Query: 149 IVQGLTEGQEYLFHVMAVNENG 170
            + GL     Y F V A +  G
Sbjct: 54  TISGLAADTSYTFTVKAKDAAG 75

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P  P G   V + + +T  L WN            Y V+R   S   +  I+T    T +
Sbjct: 5   PAFPTGLSAVLDSSGNTANLTWNAAPG-----ANSYNVKRSTKSGGPYTTIATNITSTNY 59

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPP 174
              G+  G +Y + V AV+       
Sbjct: 60  TDTGVATGTKYYYVVSAVSNGVETLN 85

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 49.7 bits (119), Expect = 8e-08
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 484 PPQFPT----VEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG-NTRFTT 538
            P FPT    V D   ++  L W A          +Y V++       +  +  N   T 
Sbjct: 4   APAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNITSTN 58

Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
              TG++ G +Y + V A +    +  S  + L  
Sbjct: 59  YTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 190 PSPP-GIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           P+ P G+  V    G+  NL+W+            Y + +       +  +   I + + 
Sbjct: 5   PAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNITSTN- 58

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
                +  G +Y + V A +    +L S+ +  
Sbjct: 59  YTDTGVATGTKYYYVVSAVSNGVETLNSAEAIL 91

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 53.6 bits (128), Expect = 3e-08
 Identities = 37/236 (15%), Positives = 67/236 (28%), Gaps = 49/236 (20%)

Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCP---KPTISWLKGSRE-----------------I 333
            ++ P     A+   +A   C +          + W+  S                    
Sbjct: 6   SVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSA 65

Query: 334 TPSARHHIFAEG---DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNV 390
               R  I  +G       L I++V   D+ +Y+C   +    +    EL          
Sbjct: 66  PYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL---KVAALGS 122

Query: 391 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI----------ESGGHFHVETS 440
                   Y D G ++  +     YP+P+I W  +              +  G + V  S
Sbjct: 123 DLHVDVKGYKDGGIHLECRST-GWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAAS 181

Query: 441 ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHD 496
                + +R +S            + L        I I+D    P F + +   H 
Sbjct: 182 -----VIMRGSSGEG---VSCTIRSSLLGLEKTASISIAD----PFFRSAQHHHHH 225

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 3/95 (3%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPTISWLKGSREITPSARHHIFAEGD-TY 348
            A        +    ++     +C  TG  P+P I W     E  P+    + A+G   Y
Sbjct: 117 VAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLY 176

Query: 349 TLIINSVYGVDADE-YVCRAVNKGGVKSTKAELII 382
            +  + +    + E   C   +        A + I
Sbjct: 177 AVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI 211

>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor); helical bundle, fibronectin type III domain, beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A {Homo sapiens} PDB: 3og4_B* Length = 226

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 27/200 (13%), Positives = 51/200 (25%), Gaps = 21/200 (10%)

Query: 107 TLHWNPPKYDGGLKVTHYVVERRDISMP-HWI----CISTT---CHDTTFIVQGLTEGQE 158
            L W P   +       Y V  +       W     C  T    C       Q L    +
Sbjct: 22  YLTWLPGLGNPQD--VTYFVAYQSSPTRRRWREVEECAGTKELLCSMMCLKKQDLYN--K 77

Query: 159 YLFHVMAVNENGMGPPLEGINPIKAKSPYD--KPSPPGIPVVTQVGGDFVNLSWDKPLDD 216
           +   V  V+ +   P +E     +        +P+PP + +         N ++  P   
Sbjct: 78  FKGRVRTVSPSSKSPWVE----SEYLDYLFEVEPAPPVLVLTQTEEILSANATYQLPPCM 133

Query: 217 GGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
               ++ Y +   + G+       V                  +           +   S
Sbjct: 134 PPLDLK-YEVAFWKEGAGNKTLFPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYS 192

Query: 277 SASNS--VQIKDPMAAKAPE 294
             S      ++ P A  +  
Sbjct: 193 KFSKPTCFLLEVPEANASGS 212

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDG--GLKVTHYVVERRDISMPHWICISTTCHDT 146
            G P   L V+ +T  T  L W+PP      G ++  Y V  RDI+    +   TT  DT
Sbjct: 9   SGFPQN-LHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNITT--DT 64

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPP 174
            F + GL     Y   V A    G GP 
Sbjct: 65  RFTLTGLKPDTTYDIKVRAWTSKGSGPL 92

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSN--ITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
            PQ   V  +   +  L W  P+     N  I +Y V  R+      ++   T  T   +
Sbjct: 11  FPQNLHVTGLTTSTTELAWDPPVLAE-RNGRIISYTVVFRDINSQQELQNITTD-TRFTL 68

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPS 566
           TGL P   Y+ +V A    G    S
Sbjct: 69  TGLKPDTTYDIKVRAWTSKGSGPLS 93

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 183 AKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDG--GSRIQGYWIDKHEVGSDAWQRV 239
             S    PS  P    VT +      L+WD P+     G RI  Y +   ++ S    + 
Sbjct: 1   GSSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQN 59

Query: 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
                  ++  +  L     Y+ +V A    G    S 
Sbjct: 60  ITTD---TRFTLTGLKPDTTYDIKVRAWTSKGSGPLSP 94

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 51.5 bits (123), Expect = 7e-08
 Identities = 25/189 (13%), Positives = 56/189 (29%), Gaps = 34/189 (17%)

Query: 303 NAIQNHNAQFQCTITGCPKPTISWLKGSREIT----------PSARHHIFAEGDTYTLII 352
             +   N  F       P   + W K   ++            S ++ ++ +  + +L I
Sbjct: 6   YGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIM-TAPKFNVPPRFRDTAYFDKGENVVVKIP 411
            ++   D DEY   + N          ++ M + P               +  N  +   
Sbjct: 65  YNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYW-----------ECSNATLTCE 113

Query: 412 FTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS 471
                  ++  Y+  E + S               T+        AP++  A N +  +S
Sbjct: 114 VLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQES 162

Query: 472 AIVKIQISD 480
            +  +   +
Sbjct: 163 EMEVVNCPE 171

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 90  GPPIGPLDVSEITKHTCTLHWNPPKYD---GGLKVTHYVVE-RRDISMPHWICISTTCHD 145
             P   L +      +  +HW PP      G  ++T Y +  R+            +   
Sbjct: 20  AAPQN-LSLEVRNSKSIMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVSGTQ 76

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT 199
            + +++GL  G EY F V A+  NG GP  +    + A++         +P V+
Sbjct: 77  LSQLIEGLDRGTEYNFRVAALTINGTGPATD---WLSAETFESDLDETRVPEVS 127

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 12/135 (8%)

Query: 170 GMGPPLEGINPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDD---GGSRIQGYW 225
           G          +  ++  D PS  P    +       + + W  P      G  +I GY 
Sbjct: 1   GSSGSS---GDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNG--QITGYK 55

Query: 226 IDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
           I   +    +     +         I  L  G +Y FRV A    G   P++   S +  
Sbjct: 56  IRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTG-PATDWLSAETF 114

Query: 286 --DPMAAKAPEIIVP 298
             D    + PE+  P
Sbjct: 115 ESDLDETRVPEVSGP 129

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 468 GMDSAIVKIQ-ISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSN--ITNYIV----E 519
              S  V ++ +SD P   PQ  ++E     S+ + W+ P      N  IT Y +     
Sbjct: 3   SGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPAT-QNGQITGYKIRYRKA 61

Query: 520 KREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELL 579
            R+  ++  +  G     +  I GL  G +Y FRV A  + G    +       T+   L
Sbjct: 62  SRKSDVTETLVSGTQ--LSQLIEGLDRGTEYNFRVAALTINGTGPATDWL-SAETFESDL 118

Query: 580 SGMEAP 585
                P
Sbjct: 119 DETRVP 124

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 49.4 bits (117), Expect = 3e-07
 Identities = 13/131 (9%), Positives = 41/131 (31%), Gaps = 10/131 (7%)

Query: 266 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 325
            + +   S      +  +    +     +      +   +       +C +      ++ 
Sbjct: 12  FERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQ 71

Query: 326 WLKGSREI--------TPSARHHIFAEG-DTYTLIINSVYGVDADEYVCRAVNKGGVKST 376
           W   +++             R  +        ++ I++V   D  EY C  +    V++ 
Sbjct: 72  WSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS-IFTMPVRTA 130

Query: 377 KAELIIMTAPK 387
           K+ + ++  P+
Sbjct: 131 KSLVTVLGIPQ 141

>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R* Length = 211

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 25/197 (12%), Positives = 50/197 (25%), Gaps = 23/197 (11%)

Query: 89  PGPPIGPLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI----CISTTC 143
             P      V  + +     L W+      G   T Y +E +      W+    C   T 
Sbjct: 2   EDPSDLLQHVKFQSSNFENILTWDSGP--EGTPDTVYSIEYKTYGERDWVAKKGCQRITR 59

Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYD--KPSPPGIPVVTQV 201
                 V+     + Y   V AV+  G              S        PP +  +++V
Sbjct: 60  KSCNLTVETGNLTELYYARVTAVSAGGRSATKM----TDRFSSLQHTTLKPPDVTCISKV 115

Query: 202 GGDFVNLSWDKPL--DDGGSRI---QGYWIDKHEVG---SDAWQRVNVAICAPSQINIPN 253
               + +           G R+     +    + +    +  +Q          +     
Sbjct: 116 RSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGG--KQREYEFFG 173

Query: 254 LIEGRQYEFRVYAQNEA 270
           L    ++   +      
Sbjct: 174 LTPDTEFLGTIMILVPT 190

>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R* Length = 211

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---NTR 535
            D  D  Q    +    +++ L W +     G+  T Y +E + +    W+         
Sbjct: 2   EDPSDLLQHVKFQSSNFENI-LTWDSG--PEGTPDTVYSIEYKTYGERDWVAKKGCQRIT 58

Query: 536 FTTMAITG--LSPGHQYEFRVYAENVYGRSDPSTT 568
             +  +T    +    Y  RV A +  GRS    T
Sbjct: 59  RKSCNLTVETGNLTELYYARVTAVSAGGRSATKMT 93

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 10/113 (8%)

Query: 170 GMGPPLEGINPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI-- 226
           G         P+  ++    PS  P       +    + + W +P +  G +IQGY +  
Sbjct: 1   GSSGSSG---PVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYY 56

Query: 227 -DKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
                   + W + NVA        I NL+  + Y  +V A    G    SS 
Sbjct: 57  TMDPTQHVNNWMKHNVA--DSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 82  TINITGLPGPPIGP---LDVSEITKHTCTLHWNPPKYDGGLKVTHYVV---ERRDISMPH 135
            +        P      +    ++  T  + W  P+   G ++  Y V         + +
Sbjct: 8   PVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNN 66

Query: 136 WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
           W+  +         +  L   + Y   V+A    G GP 
Sbjct: 67  WMKHNVA-DSQITTIGNLVPQKTYSVKVLAFTSIGDGPL 104

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 6/112 (5%)

Query: 468 GMDSAIVKIQIS-DRP-DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV---EKRE 522
              S  V  Q S   P   P+      +   ++ + W+ P    G  I  Y V       
Sbjct: 3   SGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPT 61

Query: 523 HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
             +++W++          I  L P   Y  +V A    G    S+   +IT 
Sbjct: 62  QHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQ 113

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 12/119 (10%)

Query: 82  TINITGLPGPPIGP---LDVSEITKHTCTLHWNPPKYDG------GLKVTHYVVERRDIS 132
           +  I+     P GP   + +  +T  +  + W  PK +       G ++ +         
Sbjct: 5   SSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNG 64

Query: 133 MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
               + +  T     + +  L +  +Y   V A N  G GP       I A +    PS
Sbjct: 65  QYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS---EINATTLESGPS 120

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 179 NPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPL-DDGGSRIQGY---WIDKHEVGS 233
                 +    P  PP    +  V    + ++W  P  +     I+GY   + +     +
Sbjct: 4   GSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSN 63

Query: 234 DAWQRVNVAICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
             +  V +     S    + NL +  QY   V A N AG    SS
Sbjct: 64  GQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS 108

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 12/104 (11%)

Query: 480 DRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGS-NITNYIV--------EKREHPMSSWI 529
             PD PP   T++ +   S+ + W+AP  +  +  I  Y +           ++ +    
Sbjct: 13  AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 72

Query: 530 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
             G++   T  +  L    QY   V A N  G    S+  +  T
Sbjct: 73  ATGDSEVYT--LDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT 114

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 49.7 bits (118), Expect = 5e-07
 Identities = 34/210 (16%), Positives = 57/210 (27%), Gaps = 25/210 (11%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
           +     +  R A   +  +    C+ T CP+P    L+     T   R+     G  +  
Sbjct: 1   EPFWADLQPRVAFVERGGSLWLNCS-TNCPRPERGGLE-----TSLRRNGT-QRGLRWLA 53

Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF----NVPPRFRDTAYFDKGENV 406
                      + VC           +  +     P       +PP          GEN 
Sbjct: 54  RQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQP------VGENF 107

Query: 407 VVKIPFTG-YPKPK--ITWYRDNEVIESGGHFHVETSERHAI--LTIRDASNVDTAPYRV 461
            +     G  P+    +T  R  + +            R A+   T+        A +  
Sbjct: 108 TLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSC 167

Query: 462 VAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
            AE DL      +    S    P +  T  
Sbjct: 168 RAELDLRPHGLGLFENSS---APRELRTFS 194

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 6/90 (6%)

Query: 91  PPIGPLDVS--EITKHTCTLHWN-PPKYDGGLKVTHYVV---ERRDISMPHWICISTTCH 144
           P  GP       ++     L W   P  +    +  + +        +   +        
Sbjct: 4   PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
               ++  L     Y   +   NE G    
Sbjct: 64  KQWHMIGHLQPETSYDIKMQCFNEGGESEF 93

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWD-GGSNITNYIV---EKREHPMSSWIRV---GNTRF 536
            P     E +    + L W         + I  + +          S + R    G+ ++
Sbjct: 7   GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQW 66

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
               I  L P   Y+ ++   N  G S+ S      T
Sbjct: 67  HM--IGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDK-PLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
            + P I     V    + L W   P  +  + IQG++I      SD        +   S+
Sbjct: 5   ITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSK 64

Query: 249 --INIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
               I +L     Y+ ++   NE G S  S+
Sbjct: 65  QWHMIGHLQPETSYDIKMQCFNEGGESEFSN 95

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 46.9 bits (111), Expect = 9e-07
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 189 KPSPPGIPVVTQVGGD--FVNLSWDKP--LDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
           KP PP   V   V  +   + ++W  P    D  S    +++    +  D WQ V +   
Sbjct: 7   KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVEL--S 64

Query: 245 APSQINIPNLIEGRQYEFRVYAQNE 269
             +   I +   G++Y  +V A++ 
Sbjct: 65  NGTAHTITDAYAGKEYIIQVAAKDN 89

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 473 IVKIQISDRPDPPQFPTVEDI--GHDSLALVWRAPI-WDGGSNIT-NYIVEKREHPMSSW 528
            VK      PDPP+      +      L + W+ P  W    +    + +  R   +  W
Sbjct: 5   SVK------PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQW 58

Query: 529 IRVGNTRFTTMAITGLSPGHQYEFRVYAENVY 560
             V  +  T   IT    G +Y  +V A++  
Sbjct: 59  QHVELSNGTAHTITDAYAGKEYIIQVAAKDNE 90

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 17/116 (14%)

Query: 90  GPPIGPLDVSEITKHTCTLHWNPPKYD---GGLKVTHYVV--------ERRDISMPHWIC 138
             P   + V+ +      +HW+P       G   +  Y +         +R+        
Sbjct: 16  VAPGN-VRVNVVNSTLAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRHIEKKI 72

Query: 139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
           ++     T  ++ GL     Y  +V  VN  G GP           +P       G
Sbjct: 73  LTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASP---DRVFNTPEGSGPSSG 125

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/111 (18%), Positives = 29/111 (26%), Gaps = 13/111 (11%)

Query: 179 NPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDD---GGSRIQGYWI------DK 228
           +     S  D P   PG   V  V      + WD        G   +QGY I        
Sbjct: 3   SGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSS 60

Query: 229 HEVGSDAWQRVNVAICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
            +      ++  +          +P L     Y   V   N  G    S  
Sbjct: 61  SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPD 111

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 7/112 (6%)

Query: 170 GMGPPLEGINPIKAKSPYDKPS--PPGIPVVTQVGGDFVNLSWDKP-LDDGGSRIQGYWI 226
           G          I A +    PS  P  + V      D V++ W KP        + GY I
Sbjct: 1   GSSGSSG---WILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRI 57

Query: 227 DKHEVGSDAWQRVNVAICAP-SQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
                 +   + +   +    S+  I   +       R+ A    G+   S 
Sbjct: 58  SHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSD 109

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 91  PPIGPLDVSEITKHTCT---LHWNPP--KYDGGLKVTHYVVERRDISMPHW--ICISTTC 143
           P + PL+V+     +     + W  P  K   G ++  Y +     S      +      
Sbjct: 18  PSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDG-ELVGYRISHVWQSAGISKELLEEVGQ 76

Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
           + +   +            + AV   G+GP 
Sbjct: 77  NGSRARISVQVHNATCTVRIAAVTRGGVGPF 107

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 8/109 (7%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDK-PLDDGGSRIQGYWIDK 228
           G          +   +    PS P   VV       V L+W++    +  S + GY +  
Sbjct: 1   GSSGSSG---TVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFY 57

Query: 229 HEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
                +  Q +N      +   +  L     Y   V A  + G    S 
Sbjct: 58  RTSSQNNVQVLNT---NKTSAELV-LPIKEDYIIEVKATTDGGDGTSSE 102

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 82  TINITGLPGPPIGPLD--VSEITKHTCTLHWNPPK-YDGGLKVTHYVVERRDISMPHWIC 138
           T+N+T    PP  P    V   T     L+W   K  +   +VT Y V  R  S  +   
Sbjct: 8   TVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQV 67

Query: 139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
           ++T     T     L   ++Y+  V A  + G G  
Sbjct: 68  LNTN---KTSAELVLPIKEDYIIEVKATTDGGDGTS 100

>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens} Length = 104

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
                  T  +I   SL L+W+    +  SN T Y +       SS + V   R     I
Sbjct: 8   AIQVFDVTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDSSNLNVSEPRAV---I 63

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTS 569
            GL     Y   V          P    
Sbjct: 64  PGLRSSTFYNITVCPVLGDIEGTPGFLQ 91

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 170 GMGPPLEGINPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKP-LDDGGSRIQGYWID 227
           G          I+A++    PS PP   +   +G   V +SW  P  D     I  Y + 
Sbjct: 1   GSSGSS---GTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVA 57

Query: 228 KHEVGSDAWQRVNVAICAPSQ--INIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
              V  +   R  V   +      ++  L +  +Y   V A  + G    SS
Sbjct: 58  YEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESS 109

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 9/114 (7%)

Query: 468 GMDSAIVKIQ-ISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSN--ITNYIV----E 519
              S  ++ +     P  PPQ      +G  ++ + W  P  D   N  IT Y V     
Sbjct: 3   SGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADS-RNGVITQYSVAYEAV 61

Query: 520 KREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
             E      +   +   ++  + GL    +Y   V A    G    S+   + T
Sbjct: 62  DGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRT 115

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 12/110 (10%)

Query: 90  GPPIGPLDVSEITKHTCTLHWNPPKYDG------GLKVTHYVVERRDISMPHWICISTTC 143
            PP   +    +   T  + W PP  D          V +  V+  D        IS   
Sbjct: 20  APPQK-VMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISRE- 77

Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
             +++ + GL +  EY   V A  + G GP      P+  ++  D PS P
Sbjct: 78  -HSSWDLVGLEKWTEYRVWVRAHTDVGPGPESS---PVLVRTDEDVPSGP 123

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 20/168 (11%), Positives = 50/168 (29%), Gaps = 13/168 (7%)

Query: 321 KPTISWLKGSREITPS--ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG--VKST 376
           K  ++ + G   I P    R       +  +++I ++   D   Y C  +       K  
Sbjct: 37  KMVLTMMSGDMNIWPEYKNRTIFDITNN-LSIVILALRPSDEGTYECVVLKYEKDAFKRE 95

Query: 377 KAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH 436
               + ++       P   D          ++     G+P+P ++W  + E + +     
Sbjct: 96  HLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTV 155

Query: 437 VETSER-----HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
            +  E       + L     +N     +  + +      +       +
Sbjct: 156 SQDPETELYAVSSKLDFNMTTNHS---FMCLIKYGHLRVNQTFNWNTA 200

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 13/104 (12%)

Query: 296 IVPLRNANAIQNHNAQFQCTITGCP---KPTISWLKGSR---EITPSARHHIFAEGD--- 346
           +    + +     +A     + G     KPTI W KG          AR       +   
Sbjct: 16  LKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSAS 75

Query: 347 ---TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
              T  L I  V   D   Y      K    S    + +  AP+
Sbjct: 76  NVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV-EAPR 118

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 402 KGENVVVKIPFTGYP---KPKITWYRDN---EVIESGGHFHV-ETSERHAI-----LTIR 449
            G++ VV     G     KP I W++        +SG  F   E+    +      L I 
Sbjct: 26  TGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIG 85

Query: 450 DASNVDTAPYRVVAENDLGMDSAIVKIQI 478
                D   YR+  +     DS    I +
Sbjct: 86  KVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 15/178 (8%)

Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 353
           +  V        +  +    C+ T C +P +  ++     TP  +  +   G+   +   
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCS-TSCDQPKLLGIE-----TPLPKKELLLPGNNRKVYEL 54

Query: 354 SVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFT 413
           S    +  + +C +    G  + K  L +   P+          ++   G+N+ ++    
Sbjct: 55  SNVQ-EDSQPMCYSNCPDGQSTAKTFLTVYWTPER--VELAPLPSWQPVGKNLTLRCQVE 111

Query: 414 G-YPKPKIT--WYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 468
           G  P+  +T    R  + ++       E +E    + +R       A +    E DL 
Sbjct: 112 GGAPRANLTVVLLRGEKELKREP-AVGEPAEVTTTVLVRRDH--HGANFSCRTELDLR 166

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 22/204 (10%), Positives = 52/204 (25%), Gaps = 16/204 (7%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGC---PKPTISWLKGSREITPSARHHIFAEGDTYT 349
             + +    +      N   +C + G       T+  L+G +E+    R     E    T
Sbjct: 87  ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK---REPAVGEPAEVT 143

Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNV------PPRFRDTAYFDKG 403
             +          + CR       +  +         +         PP+       +  
Sbjct: 144 TTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD 203

Query: 404 ENVVVKIPFTGYPKP---KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 460
               V     G       ++     ++ +     +  ++    A +++  A +  T    
Sbjct: 204 TQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLT 262

Query: 461 VVAENDLGMDSAIVKIQISDRPDP 484
                       +  + I   P P
Sbjct: 263 CAVILGNQSQETLQTVTIYSFPAP 286

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 459 YRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVE-DIGHDSLALVWRAP-IWDGGSNI 513
            +      +G        + +    +P+ P   +V    G +   + +    +      +
Sbjct: 87  GKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKV 146

Query: 514 TNYIVEKREHPMSSWIRVGNTRFTTMAIT--GLSPGHQYEFRV 554
             + V  R+    +     N   T + +    L P   YE +V
Sbjct: 147 LMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 5/103 (4%)

Query: 66  YTVNLSNSSG---SVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP--KYDGGLK 120
              N+    G          +     P  P     V     +   + +N    +      
Sbjct: 87  GKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKV 146

Query: 121 VTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV 163
           + H V  R++     W  ++ +    T + + L     Y   V
Sbjct: 147 LMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 25/191 (13%), Positives = 59/191 (30%), Gaps = 17/191 (8%)

Query: 102 TKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLF 161
           ++H+ T  +  P  +             ++   ++  +       T            + 
Sbjct: 35  SQHSLTCAFEDPDVNTTNLEFEICGALVEVKCLNFRKLQEIYFIETKKFL-------LIG 87

Query: 162 HVMAVNENGMGPPLEG-INPIKAKSPYDKPSPP-GIPVVTQVGGDFVNLSWDKP-LDDGG 218
                 + G        I+         KP  P  + VV + G +   ++++   L    
Sbjct: 88  KSNICVKVGEKSLTCKKIDLTT----IVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKY 143

Query: 219 SRIQGYWID-KHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
            ++  + +  + E   + W  VN++    + +    L     YE +V +  +       S
Sbjct: 144 VKVLMHDVAYRQEKDENKWTHVNLSSTKLT-LLQRKLQPAAMYEIKVRSIPDHYFKGFWS 202

Query: 278 A-SNSVQIKDP 287
             S S   + P
Sbjct: 203 EWSPSYYFRTP 213

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 8/110 (7%)

Query: 170 GMGPPLEGINPIKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDK 228
           G              S  D PS  P    V  +    +++ W+  L+     ++ Y I  
Sbjct: 1   GSSGSSG---VAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRY 54

Query: 229 HEVGSDAWQRVNVAICAPS-QINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
                       V + +      + NL+   QY   V A N AG   PS 
Sbjct: 55  WAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSD 104

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 468 GMDSAIVKIQ-ISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV---EKRE 522
              S +  I    D P   P    V+ +    +++ W   +      + +Y +      +
Sbjct: 3   SGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHD 59

Query: 523 HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
              ++      ++  +  +  L P  QY   V A N  G   PS   +  T
Sbjct: 60  KEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFT 110

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 11/108 (10%)

Query: 90  GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVV---ERRDISMPHWICISTTCHDT 146
             P   + V  ++    ++HW          V  Y +      D        +  T  + 
Sbjct: 20  EAPTE-VGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANR-VQVTSQEY 74

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
           +  ++ L    +Y   V A N  G GPP +    I+A +        G
Sbjct: 75  SARLENLLPDTQYFIEVGACNSAGCGPPSD---MIEAFTKKASGPSSG 119

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 13/182 (7%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
           K  E+ V  +        + +  C+ T C +P +  L+ S          +  E   +  
Sbjct: 1   KVFEVHVRPKKLAVEPKGSLEVNCS-TTCNQPEVGGLETS------LNKILLDEQAQWKH 53

Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI 410
            + S          C     G  +S  + + +   P+  +           K   +  ++
Sbjct: 54  YLVSNIS-HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRV 112

Query: 411 PFTGYPKPKIT--WYRDNEVIESGGHFHVETSERHAILTIRD-ASNVDT-APYRVVAEND 466
           P T  P   +T   +R NE +          + + A  T    A   D    +  +A  D
Sbjct: 113 P-TVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD 171

Query: 467 LG 468
           L 
Sbjct: 172 LM 173

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 43/308 (13%), Positives = 81/308 (26%), Gaps = 56/308 (18%)

Query: 296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINS 354
           +V L              C      +  I+W    S E+  S +          TL I  
Sbjct: 10  VVELDWYPDAPGEMVVLTCD--TPEEDGITWTLDQSSEVLGSGK----------TLTIQV 57

Query: 355 VYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG 414
               DA +Y C      G +     L+++   +  +          +      ++     
Sbjct: 58  KEFGDAGQYTCHK----GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKN 113

Query: 415 YPKPKITWYRDNE------------------------VIESGGHFHVETSERHAILTIRD 450
           Y      W+                               S      +  E    +  ++
Sbjct: 114 YSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQE 173

Query: 451 ASNVDTA------PYRVVAENDLGMDSAIVKIQISD--RPDPPQFPTVEDI-GHDSLALV 501
            S    A         V A + L  +       I D  +PDPP+   ++ +     + + 
Sbjct: 174 DSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVS 233

Query: 502 WRAPI-WDGGSNITN--YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAEN 558
           W  P  W    +  +  + V+ +            T  T+     +         V A++
Sbjct: 234 WEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTS---ATVICRKNASISVRAQD 290

Query: 559 VYGRSDPS 566
            Y  S  S
Sbjct: 291 RYYSSSWS 298

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 41.3 bits (95), Expect = 6e-04
 Identities = 38/285 (13%), Positives = 69/285 (24%), Gaps = 45/285 (15%)

Query: 21  GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT 80
             +   ++ T +             VL     + I+     DAG YT +      S S  
Sbjct: 30  TPEEDGITWTLDQSSE---------VLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLL 80

Query: 81  FT------------INITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER 128
                         +     P         ++      T  W                  
Sbjct: 81  LLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGS 140

Query: 129 RD---ISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKS 185
            D   ++       +          +   E QE      A     +   ++ ++ +K + 
Sbjct: 141 SDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQ 200

Query: 186 P--------YDKPSPPGIPVVTQVGGDF-VNLSWDKPLDDGGSRIQGYWIDKHEV----- 231
                      KP PP    +  +     V +SW+ P  D  S    Y+     V     
Sbjct: 201 YTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYP--DTWSTPHSYFSLTFCVQVQGK 258

Query: 232 GSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
                +         +      +I  +     V AQ+    S  S
Sbjct: 259 SKREKKDRV-----FTDKTSATVICRKNASISVRAQDRYYSSSWS 298

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 23/191 (12%), Positives = 53/191 (27%), Gaps = 40/191 (20%)

Query: 303 NAIQNHNAQFQCTITGCPKP-TISWLKGSRE-------------ITPSARHHIFAEGDTY 348
           NAI   N               ++WL  + +                  +  +  +    
Sbjct: 10  NAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG 69

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII---MTAPKFNVPPRFRDTAYFDKGEN 405
            L I +V   D  +Y  R +++   +     + +   ++ P               +  N
Sbjct: 70  ALRIYNVSKEDRGDYYMRMLHETEDQWK-ITMEVYEMVSKPMIYW-----------ECSN 117

Query: 406 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
             +          ++  Y+  E + S               T+        AP++  A N
Sbjct: 118 ATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVN 166

Query: 466 DLGMDSAIVKI 476
            +  +S +  +
Sbjct: 167 RVSQESEMEVV 177

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 27/192 (14%), Positives = 51/192 (26%), Gaps = 28/192 (14%)

Query: 303 NAIQNHNAQFQCTITGCPKPT-ISWLKGSREI---------------TPSARHHIFAEGD 346
           N I   +           K   I+WL     +               T   +        
Sbjct: 9   NGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ 68

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV 406
           +Y+L ++++   D   Y  +   K   K +   L I+   + N+        + +    +
Sbjct: 69  SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLR-NIQVTNHSQLFQNMTCEL 127

Query: 407 VVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 465
            +              W      + S  +  V    R +              Y  +AEN
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRIS----------SEQDYTCIAEN 177

Query: 466 DLGMDSAIVKIQ 477
            +   S  V  Q
Sbjct: 178 AVSNLSFSVSAQ 189

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 198 VTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD----AWQRVNVAICAPSQINIPN 253
              +    V ++W          IQGY +   +        +WQ ++  +       + N
Sbjct: 24  PVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN 81

Query: 254 LIEGRQYEFRVYAQNEAGLSLPSSA 278
           L +G  YE +V         + S +
Sbjct: 82  LKKGVTYEIKVRPYFNEFQGMDSES 106

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 8/91 (8%)

Query: 490 VEDIGHDSLALVWRAPIWDGGSNITNYIVEKRE----HPMSSWIR--VGNTRFTTMAITG 543
              +   ++ + W          I  Y V  R+       SSW           +  +  
Sbjct: 24  PVVLTPTTVQVTWTVD--RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN 81

Query: 544 LSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           L  G  YE +V       +   S +  + TT
Sbjct: 82  LKKGVTYEIKVRPYFNEFQGMDSESKTVRTT 112

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 5/92 (5%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDG---GLKVTHYVVERRDISMPHWICIS-TT 142
            L    +   +   +T  T  + W   +      G +V  Y       +   W  +    
Sbjct: 13  ELGDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRV-MYRQTSGLQATSSWQNLDAKV 71

Query: 143 CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
             + + ++  L +G  Y   V        G  
Sbjct: 72  PTERSAVLVNLKKGVTYEIKVRPYFNEFQGMD 103

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 43.4 bits (101), Expect = 8e-05
 Identities = 21/185 (11%), Positives = 43/185 (23%), Gaps = 16/185 (8%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPTISWLKGSREITPSARHHIFAEGDTYT 349
           K  ++  P          + Q  C +       ++ W         ++   + ++     
Sbjct: 6   KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLD-----TSLGAVQSDTGRSV 60

Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 409
           L + +     A   VC     G       +L++   P           A       V   
Sbjct: 61  LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPN---QLTVSPAALVPGDPEVACT 117

Query: 410 IPFTGYPKP----KITWYRDNEVIESGGHFHVET-SERHAILTIRDASNVDTAPYRVVA- 463
                 P        +     + +E       E   E        D     T  +R+   
Sbjct: 118 AH-KVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPL 176

Query: 464 ENDLG 468
              + 
Sbjct: 177 GTPVP 181

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 98

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 484 PPQFPTVEDIGH--DSLALVWRAPIWDGGSNITNYIVE-KREHPMSSWIRVG-NTRFTTM 539
            P    + +     +S  + W AP     S+I+ YI+  + ++ +  W          + 
Sbjct: 7   GPVEVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHLNSY 63

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            I GL PG  YE ++ +   YG  +  T  D  TT
Sbjct: 64  TIKGLKPGVVYEGQLISIQQYGHQE-VTRFDFTTT 97

>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 482 PDPPQFPTVEDIGHDSLALV-WRAPIWD-----GGSNITNYIVEKREHPMSSWIRVGNTR 535
           P PPQ  TV+     +   V WR P+        G+N+T Y V  +   ++  I      
Sbjct: 18  PAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFP-TAD 76

Query: 536 FTTMAITGLSPGHQYEFRVYAENVYGRSDPS 566
            T + +  L         V   +  G S  S
Sbjct: 77  STAVELVRLRSLEAKGVTVRTLSAQGESVDS 107

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 22/148 (14%)

Query: 66  YTVNLSNSSGSVS---GTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPP----KYDGG 118
           ++V +++ SG  S   G+F +  +  P PP    DV+        + W        +   
Sbjct: 75  FSVQITDQSGQYSQECGSFLLAESIKPAPP---FDVTVTFSGQYQISWRSDYEDPAFYML 131

Query: 119 LKVTHYVVERRDIS-----MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP 173
                Y ++ R+        P    IS      + +     +   Y   V A    G   
Sbjct: 132 KGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSS- 190

Query: 174 PLEGI-----NPIKAKSPYDKPSPPGIP 196
             +G      +P+  ++  ++       
Sbjct: 191 -YQGTWSEWSDPVIFQTQSEELKEHHHH 217

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 31/193 (16%), Positives = 53/193 (27%), Gaps = 23/193 (11%)

Query: 97  DVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEG 156
           ++  +   T TL W     +   + T   + R   +  H      TCH     V      
Sbjct: 19  EMWNLHPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATY---TCH---MDVFHFMAD 72

Query: 157 QEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDD 216
             +   +                  +      KP+PP    VT  G     +SW    +D
Sbjct: 73  DIFSVQIT-DQSGQYSQECGSFLLAE----SIKPAPPFDVTVTFSGQ--YQISWRSDYED 125

Query: 217 GGSRIQGYWIDKHEV----GSDAWQRVNVAICAPSQ-----INIPNLIEGRQYEFRVYAQ 267
               +    + ++E+      D W                 +      +   YE +V A 
Sbjct: 126 PAFYMLKGKL-QYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAG 184

Query: 268 NEAGLSLPSSASN 280
              G S   + S 
Sbjct: 185 PMPGSSYQGTWSE 197

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 29/190 (15%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 353
           +  V        +  +    C+ T C +P +  ++     TP  +  +   G+   +   
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCS-TSCDQPKLLGIE-----TPLPKKELLLPGNNRKVYEL 54

Query: 354 SVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK--IP 411
           S    D+ + +C +    G  + K  L +   P+  V      +     G+ + ++  + 
Sbjct: 55  SNVQEDS-QPMCYSNCPDGQSTAKTFLTVYWTPE-RVELAPLPSWQP-VGKQLTLRCQVE 111

Query: 412 FTGYPKPKIT--WYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 469
             G P+ ++T    R  + ++       E +E    + +R   +   A +    E DL  
Sbjct: 112 -GGAPRAQLTVVLLRGEKELKREP-AVGEPAEVTTTVLVR--RDHHGAQFSCRTELDLRP 167

Query: 470 DSAIVKIQIS 479
               +    S
Sbjct: 168 QGLELFENTS 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	591
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.98
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.98
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.98
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.97
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.97
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.96
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.96
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.96
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.96
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.96
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.96
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.96
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.96
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.96
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.95
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.95
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.95
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.95
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.95
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.95
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.95
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.95
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.95
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.95
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.95
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.95
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.95
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.95
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.95
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.94
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.94
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.94
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.94
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.94
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.94
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.94
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.94
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.94
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.94
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.94
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.94
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.94
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.93
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.93
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.93
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.93
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.93
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.93
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.93
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.92
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.92
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.92
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.92
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.92
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.92
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.92
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.92
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.92
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.92
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.92
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.92
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.92
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.91
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.91
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.91
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.91
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.91
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.91
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.91
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.91
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.91
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.91
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.91
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.91
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.9
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.9
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.9
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.9
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.9
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.9
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.9
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.9
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.9
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.89
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.89
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.89
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.89
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.89
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.89
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.89
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.89
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.89
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.89
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.88
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.88
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.88
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.88
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.88
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.88
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.87
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.87
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.87
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.87
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.87
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.87
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.87
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.87
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.87
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.86
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.86
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.86
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.86
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.86
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.85
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.85
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.85
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.85
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.85
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.85
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.85
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.85
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.85
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.85
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.85
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.84
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.84
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.84
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.84
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.84
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.83
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.83
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.83
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.83
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.83
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.83
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.83
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.83
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.83
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.83
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.82
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.82
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.82
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.82
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.82
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.82
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.82
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.82
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.82
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.81
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.81
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.81
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.81
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.81
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.81
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.8
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.8
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.8
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.8
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.79
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.79
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.79
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.79
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.79
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.79
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.79
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.78
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.78
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.78
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.78
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.78
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.78
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.78
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.78
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.78
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.78
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.78
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.78
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.78
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.77
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.77
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.77
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.77
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.77
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.77
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.77
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.77
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.77
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.77
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.76
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.76
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.76
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.76
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.76
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.76
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.76
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.76
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.76
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.76
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.76
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.75
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.75
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.75
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.75
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.75
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.75
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.75
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.75
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.74
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.74
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.74
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.74
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.74
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.74
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.74
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.74
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.74
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.74
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.73
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.73
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.73
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.73
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.73
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.73
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.72
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.72
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.72
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.72
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.72
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.72
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.72
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.71
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.71
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.71
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.71
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.71
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.71
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.71
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.71
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.71
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.7
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.7
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.7
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.7
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.7
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.7
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.69
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.69
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.69
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.68
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.68
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.68
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.68
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.68
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.68
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.68
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.68
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.68
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.68
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.68
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.67
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	99.67
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.67
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.67
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.67
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.67
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.67
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.67
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.67
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.66
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.66
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.66
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.66
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.66
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.66
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.66
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.66
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.66
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.66
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.66
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.66
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.66
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.65
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.65
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.65
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.65
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.65
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.64
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.64
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.64
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.64
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.64
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.64
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.64
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.64
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.64
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.64
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.64
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.64
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.64
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.64
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	99.63
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.63
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.63
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.63
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.63
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.63
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.63
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.63
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.62
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.62
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.62
1he7_A	126	High affinity nerve growth factor receptor; transf	99.62
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.62
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.62
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.62
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.62
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.61
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.61
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.61
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.61
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.61
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.61
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.61
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.61
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.61
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	99.6
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.6
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.6
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.6
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.6
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.6
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.6
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.6
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	99.6
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.59
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.59
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.59
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.59
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.58
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.58
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.58
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.58
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.58
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.58
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.58
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.58
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.58
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.58
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.57
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.57
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.57
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.57
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.57
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.57
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.57
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.57
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.57
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.56
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.56
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.56
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.56
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.56
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.56
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.56
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.56
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.56
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.55
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.55
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.55
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.55
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.55
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	99.55
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.55
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.54
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.54
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.54
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.54
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.54
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.54
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.54
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.54
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.54
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.54
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.54
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.53
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.53
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.53
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.53
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.53
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.53
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.53
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.53
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.53
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.53
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.53
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.52
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.52
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.52
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.52
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.52
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.52
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.52
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.52
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.52
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.52
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.52
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.52
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.52
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.51
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.51
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.51
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.51
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.51
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.51
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.51
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.51
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	99.5
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.5
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.5
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.5
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.5
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	99.5
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.5
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.5
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.5
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.5
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.49
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.49
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.49
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.49
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.49
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.49
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.49
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.49
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.49
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.49
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.48
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	99.48
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.48
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.48
1he7_A	126	High affinity nerve growth factor receptor; transf	99.48
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.48
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.48
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.48
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.48
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.48
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.48
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.47
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.47
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.47
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.47
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.47
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.47
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.47
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.47
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.47
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.47
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.47
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.47
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.46
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.46
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.46
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.46
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.46

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.5e-53  Score=423.68  Aligned_cols=543  Identities=17%  Similarity=0.233  Sum_probs=385.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      ++++.+.+|+++.|.|.+.|.|.+.|.|+|||..+....++++...++..+|.|.+++.+|+|.|+|.|.|..|......
T Consensus        12 ~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~   91 (570)
T 3b43_A           12 LEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSA   91 (570)
T ss_dssp             CCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceEEEEE
Confidence            45788999999999999999999999999999999888888887777788999999999999999999999999988888


Q ss_pred             EEEEecCCCCCC---CCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcE
Q psy12425         82 TINITGLPGPPI---GPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQE  158 (591)
Q Consensus        82 ~l~v~~~p~~p~---~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  158 (591)
                      .+.|...+.+|.   .+..+....+..+.|.|...... ...+.||.= ....................+.|..+...+.
T Consensus        92 ~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p-~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~  169 (570)
T 3b43_A           92 VLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSE-PLQVSWYKD-GELLKDDANLQTSFIHNVATLQILQTDQSHV  169 (570)
T ss_dssp             EEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSS-SCEEEEEET-TEECCCCSSEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCC-CCEEEEEEC-CEECcCCCCEEEEEECCEEEEEECcCChHHC
Confidence            888876443333   22334555678899999743211 112333321 1111111112222223456788999999999


Q ss_pred             EEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCC-CCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccE
Q psy12425        159 YLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG-IPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQ  237 (591)
Q Consensus       159 y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~  237 (591)
                      +.|+|.|.|..|....+....   ......+|.... ........|..++|.|.....+. ..+. |...........-.
T Consensus       170 G~Y~C~a~n~~g~~~~~~~l~---v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~-p~i~-W~k~g~~i~~~~~~  244 (570)
T 3b43_A          170 GQYNCSASNPLGTASSSAKLT---LSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAP-IKIT-WAKDNREIRPGGNY  244 (570)
T ss_dssp             EEEEEEEEETTEEEEEEEEEE---EECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSC-CEEE-EEETTEECCTTSSE
T ss_pred             EEEEEEEEeCCcEEEEEEEEE---EcCCCCCCccccCCceeEecCCCeEEEEEEEEECCC-CEEE-EEECCEECcCCCcE
Confidence            999999999887643322111   111111111000 01123346788999998753221 1222 22111111111111


Q ss_pred             EEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeecc-ccceeccccEEEEEEE
Q psy12425        238 RVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR-NANAIQNHNAQFQCTI  316 (591)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~g~~~~l~c~~  316 (591)
                      ... .......|.|.++...|.|.|+|.|.|..|...   ....+.+.     .+|.+...+. ...+.+|+.+.|.|.+
T Consensus       245 ~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~---~~~~l~V~-----~~p~~~~~~~~~~~v~~g~~~~l~C~~  315 (570)
T 3b43_A          245 KMT-LVENTATLTVLKVTKGDAGQYTCYASNVAGKDS---CSAQLGVQ-----EPPRFIKKLEPSRIVKQDEHTRYECKI  315 (570)
T ss_dssp             EEE-EETTEEEEEESSBCGGGCEEEEEEEEETTEEEE---EEEEECCB-----CCCEEEECCCSBCCEESSCEEEEEEEE
T ss_pred             EEE-EECCEEEEEEcccCcccCEEEEEEEECCCCcEE---EEEEEEee-----cCCcccccCCCccEEcCCCcEEEEEEE
Confidence            111 112346899999999999999999999887532   23344443     5677665543 3457889999999999


Q ss_pred             cCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCccc
Q psy12425        317 TGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD  396 (591)
Q Consensus       317 ~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~  396 (591)
                      .|.|.+.+.|++++..+....++.+...+....|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+...+.   
T Consensus       316 ~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~---  392 (570)
T 3b43_A          316 GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPH---  392 (570)
T ss_dssp             ESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCC---
T ss_pred             eeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCC---
Confidence            99999999999999999888888877777778999999999999999999999999999999999999998776553   


Q ss_pred             ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|.....+.+
T Consensus       393 ~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  472 (570)
T 3b43_A          393 PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI  472 (570)
T ss_dssp             CEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             ceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEE
Confidence            34567899999999999999999999999999988888888777777899999999999999999999999999999999


Q ss_pred             EecCCCC---CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeC-CCCceEEeceeeeeEEEEcCcccCceEEE
Q psy12425        477 QISDRPD---PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH-PMSSWIRVGNTRFTTMAITGLSPGHQYEF  552 (591)
Q Consensus       477 ~v~~~p~---~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~  552 (591)
                      .+..+|.   .+..+  ....+..+.|.|...... ...+.+|.-..... ...............|.|.++.+.+.+.|
T Consensus       473 ~v~~~P~~~~~~~~~--~~~~g~~~~l~c~~~g~p-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  549 (570)
T 3b43_A          473 TLKAPPRFVKKLSDI--STVVGEEVQLQATIEGAE-PISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKY  549 (570)
T ss_dssp             EECCCCEEEECCCCB--CCBTTCCEEEEEEEESCS-SCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEE
T ss_pred             EeccCCcccccCCCc--eecCCCeEEEEEEEecCC-CCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEE
Confidence            9988774   22222  223456788888753211 11233332111111 11122222233456899999999999999


Q ss_pred             EEEEEcCCcCCCCC
Q psy12425        553 RVYAENVYGRSDPS  566 (591)
Q Consensus       553 ~v~A~n~~G~~~~s  566 (591)
                      +|.|.|.+|....+
T Consensus       550 ~C~a~N~~G~~~~~  563 (570)
T 3b43_A          550 TCQIKNEAGTQECF  563 (570)
T ss_dssp             EEEEECSSCEEEEE
T ss_pred             EEEEEECCcEEEEE
Confidence            99999999976544

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=4.2e-47  Score=377.45  Aligned_cols=455  Identities=18%  Similarity=0.282  Sum_probs=336.8

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      .++.+.+|+++.|.|.+.|.|++.|.|+|||+.+....+++.....+..+|.|.++..+|+|.|+|.|.|..|....+..
T Consensus       109 ~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  188 (570)
T 3b43_A          109 KDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAK  188 (570)
T ss_dssp             CCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEE
Confidence            45678899999999999999999999999999998887777666677789999999999999999999999999888888


Q ss_pred             EEEecCCCCCC---CCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEE
Q psy12425         83 INITGLPGPPI---GPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY  159 (591)
Q Consensus        83 l~v~~~p~~p~---~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  159 (591)
                      +.|.....+|.   .|..+....+..+.|.|...... ...+.||.-. .......-...........+.|.++...+.+
T Consensus       189 l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p-~p~i~W~k~g-~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G  266 (570)
T 3b43_A          189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTA-PIKITWAKDN-REIRPGGNYKMTLVENTATLTVLKVTKGDAG  266 (570)
T ss_dssp             EEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSS-CCEEEEEETT-EECCTTSSEEEEEETTEEEEEESSBCGGGCE
T ss_pred             EEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECC-CCEEEEEECC-EECcCCCcEEEEEECCEEEEEEcccCcccCE
Confidence            88876544433   23333445677888888743211 1123322211 1111111122222334567999999999999


Q ss_pred             EEEEEEEccCCCCCCCCccCcccccCCCCCCCC--CCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccE
Q psy12425        160 LFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP--PGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQ  237 (591)
Q Consensus       160 ~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~  237 (591)
                      .|+|.|.|..|........   ....   +|..  ..........+..+.|.|.....+. ..+.+| ............
T Consensus       267 ~Y~C~a~N~~g~~~~~~~l---~V~~---~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~-p~v~W~-k~~~~l~~~~~~  338 (570)
T 3b43_A          267 QYTCYASNVAGKDSCSAQL---GVQE---PPRFIKKLEPSRIVKQDEHTRYECKIGGSPE-IKVLWY-KDETEIQESSKF  338 (570)
T ss_dssp             EEEEEEEETTEEEEEEEEE---CCBC---CCEEEECCCSBCCEESSCEEEEEEEEESSSS-CEEEEE-ETTEECCCSSSE
T ss_pred             EEEEEEECCCCcEEEEEEE---Eeec---CCcccccCCCccEEcCCCcEEEEEEEeeCCC-CEEEEe-ECCEECCCCCcE
Confidence            9999999988764322211   1111   1110  0011223456788999998753322 122222 111111111111


Q ss_pred             EEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEc
Q psy12425        238 RVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT  317 (591)
Q Consensus       238 ~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~  317 (591)
                      ... .......|.|.++...|.|.|+|.|.|..|...   ....+.+.     .+|.+...+....+.+|+.+.|.|.+.
T Consensus       339 ~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~---~~~~l~V~-----~~P~~~~~~~~~~~~~G~~v~l~C~~~  409 (570)
T 3b43_A          339 RMS-FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS---SSTSLKVK-----EPPVFRKKPHPVETLKGADVHLECELQ  409 (570)
T ss_dssp             EEE-EETTEEEEEEESCCGGGCEEEEEEEEBTTBCCE---EEEEECEE-----CCCEECSCCCCEEECTTCCEEEEEEEE
T ss_pred             EEE-EECCEEEEEECCCCcccCEEEEEEEEeCCCEEE---EEEEEEec-----CCCeeecCCCceeecCCCEEEEEEEEe
Confidence            221 122346799999999999999999999988643   23344443     578887777777888999999999999


Q ss_pred             CCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccc
Q psy12425        318 GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDT  397 (591)
Q Consensus       318 ~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~  397 (591)
                      |.|.+.+.|++++..+..+.++.+..++...+|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+...+.   .
T Consensus       410 g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~---~  486 (570)
T 3b43_A          410 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLS---D  486 (570)
T ss_dssp             SSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCC---C
T ss_pred             cCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCC---C
Confidence            9999999999999999888888888888888999999999999999999999999999999999999988765542   3


Q ss_pred             eeecCCCeEEEEEeeeccCCCeEEEeeCCeEe-eeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        398 AYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       398 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      ..+..|+.+.|.|.+.|.|.+.+.|++++..+ .....+.+...+....|.|.++..+|+|.|+|.|.|..|..+..+.|
T Consensus       487 ~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L  566 (570)
T 3b43_A          487 ISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATL  566 (570)
T ss_dssp             BCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEE
T ss_pred             ceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEE
Confidence            45678999999999999999999999998654 34556667666778999999999999999999999999999999988


Q ss_pred             Eec
Q psy12425        477 QIS  479 (591)
Q Consensus       477 ~v~  479 (591)
                      .|.
T Consensus       567 ~V~  569 (570)
T 3b43_A          567 SVL  569 (570)
T ss_dssp             CCB
T ss_pred             EEe
Confidence            774

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=5e-43  Score=355.00  Aligned_cols=505  Identities=12%  Similarity=0.164  Sum_probs=340.9

Q ss_pred             eeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EEEEEE
Q psy12425          5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTFTI   83 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~~~~l   83 (591)
                      ..+.+|+.+.|.|.+.+ |.+.+.|+|+|..+..+.++.+..  +...|.|.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus       121 ~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l  197 (642)
T 1e07_A          121 KPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSN--GNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVIL  197 (642)
T ss_pred             eeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCceEEcC--CCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEE
Confidence            45788999999999998 899999999999998777665543  34589999999999999999999988865 456888


Q ss_pred             EEecCCCCCCC-CcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEE
Q psy12425         84 NITGLPGPPIG-PLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFH  162 (591)
Q Consensus        84 ~v~~~p~~p~~-~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~  162 (591)
                      .|...|..+.. +.......+..+.|.|...    +.+...+.+.+.  +.    .   ......+.|.++...+.+.|+
T Consensus       198 ~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~----g~p~~~i~W~~~--g~----~---i~~~~~L~i~~~~~~d~G~Y~  264 (642)
T 1e07_A          198 NVLYGPDAPTISPLNTSYRSGENLNLSCHAA----SNPPAQYSWFVN--GT----F---QQSTQELFIPNITVNNSGSYT  264 (642)
T ss_pred             EEEeCCCCcEEecCCcccccCCEEEEEEEcC----CCCCcEEEEEEC--Ce----E---cccCCceEEecccccCCeEEE
Confidence            88876655432 2233445678899999852    222222333221  10    0   113456889999999999999


Q ss_pred             EEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEee
Q psy12425        163 VMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA  242 (591)
Q Consensus       163 ~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~  242 (591)
                      |.|.|..|....+.... +....+...|............++.+.|.|.....+  ..+.+| ..........  +... 
T Consensus       265 C~a~n~~g~~~~s~~~~-v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p--~~v~W~-~~g~~l~~~~--~~~~-  337 (642)
T 1e07_A          265 CQAHNSDTGLNRTTVTT-ITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN--TTYLWW-VNNQSLPVSP--RLQL-  337 (642)
T ss_pred             EEEEeCCCceEEeeeEE-EEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC--ccEEEE-ECCccCCCcC--CEEE-
Confidence            99999887643322211 111111111111111122334467799999875322  122222 1111111111  1111 


Q ss_pred             ecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCC
Q psy12425        243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP  322 (591)
Q Consensus       243 ~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~  322 (591)
                      ......|.|.++...|.|.|+|.|.|..|....  ....+.+..    .|+.....+....+.+|+.+.|.|.+.|.|.+
T Consensus       338 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s--~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~  411 (642)
T 1e07_A          338 SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHS--DPVILNVLY----GPDDPTISPSYTYYRPGVNLSLSCHAASNPPA  411 (642)
T ss_pred             eCCCCEEEEeccCcccCeeEEEEEeCCCCCcce--eeEEEEEEc----CCCCCeecCCceEecCCCcEEEEEEcCccCCC
Confidence            123578999999999999999999998875322  223444431    12222334455678899999999999999999


Q ss_pred             eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeee--EEEEec---CCcccCCCCcccc
Q psy12425        323 TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA--ELIIMT---APKFNVPPRFRDT  397 (591)
Q Consensus       323 ~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~--~l~v~~---~p~~~~~~~~~~~  397 (591)
                      .+.|++++..+...           ..|.|.++..+|.|.|+|.|.|..|....+.  .+.|..   +|.+..    ...
T Consensus       412 ~i~W~~~g~~~~~~-----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~----~~~  476 (642)
T 1e07_A          412 QYSWLIDGNIQQHT-----------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS----NNS  476 (642)
T ss_pred             eEEEEECCEEcCCC-----------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEec----CCc
Confidence            99999998776532           2599999999999999999999998776554  444443   222222    123


Q ss_pred             eeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEE
Q psy12425        398 AYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKI  476 (591)
Q Consensus       398 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~  476 (591)
                      ..+..|+.+.|.|.+.+ |.+.+.|+++|..+....++.+..  ....|.|.++...|+|.|+|.|.|..|.. +..+.|
T Consensus       477 ~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l  553 (642)
T 1e07_A          477 KPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSN--GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTL  553 (642)
T ss_pred             eeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcC--CCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEE
Confidence            45678999999999994 889999999999988777666543  35689999999999999999999999986 446888


Q ss_pred             EecCCCCCCCCC--eeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEE
Q psy12425        477 QISDRPDPPQFP--TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRV  554 (591)
Q Consensus       477 ~v~~~p~~p~~~--~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v  554 (591)
                      .|..+|..+...  ......+..+.|.|....   . +...  +.|...+.    .+.  ....+.|.++.+.+.+.|+|
T Consensus       554 ~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g---~-p~p~--v~W~~~g~----~i~--~~~~L~i~~~~~~d~G~Y~C  621 (642)
T 1e07_A          554 DVLYGPDTPIISPPDSSYLSGANLNLSCHSAS---N-PSPQ--YSWRINGI----PQQ--HTQVLFIAKITPNNNGTYAC  621 (642)
T ss_pred             EEEeCCCcceecCCceeEEcCCcEEEEEEecc---C-CCCe--EEEEECCE----ECc--cCceEEECcccccCCeEEEE
Confidence            888666433210  122234567888888532   1 1112  22222211    011  12479999999999999999


Q ss_pred             EEEcCCcCCCCCCC
Q psy12425        555 YAENVYGRSDPSTT  568 (591)
Q Consensus       555 ~A~n~~G~~~~s~~  568 (591)
                      .|.|.+|....+..
T Consensus       622 ~a~N~~G~~~~s~~  635 (642)
T 1e07_A          622 FVSNLATGRNNSIV  635 (642)
T ss_pred             EEEecccCcceeEE
Confidence            99999998765544

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=1.1e-43  Score=370.19  Aligned_cols=518  Identities=16%  Similarity=0.176  Sum_probs=351.8

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEE-CCEEeecCCceeEEEeCCeEEEEEcccCCCC------ceEEEEEEEcCCee
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTK-NGRVVQSDDRFKFTVLDDYIIIFIKEIRKED------AGDYTVNLSNSSGS   76 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~g~Y~c~~~n~~g~   76 (591)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|+| ||..+....+......+  .+|.|.++...|      +|.|+|.|.|..|.
T Consensus        48 ~~~~~~g~~~~l~C~a~g~p~p~~~W~k~~g~~~~~~~~~~~~~~~--g~l~i~~~~~~~~~~~~d~G~Y~C~a~n~~G~  125 (816)
T 3dmk_A           48 RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD--GKLVFPPFRAEDYRQEVHAQVYACLARNQFGS  125 (816)
T ss_dssp             EEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECST--TEEEECCCCGGGCCHHHHEEEEEEEEEETTEE
T ss_pred             eEEEECCCCeEEEeeecCCCCCEEEEEeCCCCCccCCCceEEEeeC--CcEEEcCCChHHccccccceEEEEEEecCcce
Confidence            4678999999999999999999999999 89888655443333333  379999998887      89999999999998


Q ss_pred             e-EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecC----------CCceEEEEeecCc
Q psy12425         77 V-SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS----------MPHWICISTTCHD  145 (591)
Q Consensus        77 ~-~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~----------~~~~~~~~~~~~~  145 (591)
                      . +..+.|.+...+.....+..+....+..+.|.|..+..... ...  .+.|...+          .....    ....
T Consensus       126 ~~S~~~~v~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~~~--~v~W~~~~~~~~~~~~~~~~r~~----~~~~  198 (816)
T 3dmk_A          126 IISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD-FVE--VVSWHTDEEENYFPGAEYDGKYL----VLPS  198 (816)
T ss_dssp             EEEEEEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCHHHHT-TEE--EEEEEETTSCEECBSSCBTTTEE----ECTT
T ss_pred             EEccceEEEEEEccccEEEEecceEecCceEEEEECCCccccc-cEE--EEEEEecCceEeccccCCCceEE----EecC
Confidence            7 56677777666555544455667789999999987542111 111  12222111          11111    1245


Q ss_pred             ceEEEcCCcCCcE-EEEEEEEEccCCCCCC-CCccCcccccCCCC--CCCCCCC---CeEEeecCCeEEEEEecCCCCCC
Q psy12425        146 TTFIVQGLTEGQE-YLFHVMAVNENGMGPP-LEGINPIKAKSPYD--KPSPPGI---PVVTQVGGDFVNLSWDKPLDDGG  218 (591)
Q Consensus       146 ~~~~i~~l~~~~~-y~~~~~a~n~~g~~~~-~~~~~~~~~~~~~~--~p~~~~~---~~~~~~~~~~v~l~w~~~~~~~~  218 (591)
                      ..+.|.++.+.+. +.|+|.+.+..+.... +.....+....+..  .|.....   .......+..++|.|.....+. 
T Consensus       199 g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~-  277 (816)
T 3dmk_A          199 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPV-  277 (816)
T ss_dssp             SCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCCCBCSSC-
T ss_pred             ceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEEeeecCC-
Confidence            5799999999998 9999999975433211 11111111111111  1111111   1345567889999998753221 


Q ss_pred             cceEEEEEEeeecCCCccEEE---EeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeE
Q psy12425        219 SRIQGYWIDKHEVGSDAWQRV---NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEI  295 (591)
Q Consensus       219 ~~~~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~  295 (591)
                      ..+.+|..   ..+.......   .........|.|.++...|.|.|+|.|.|..|...   ....+.+.     .+|.+
T Consensus       278 p~v~W~k~---~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~---~~~~l~V~-----~~~~~  346 (816)
T 3dmk_A          278 PVFRWYKF---IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES---VETVLTVT-----APLSA  346 (816)
T ss_dssp             CEEEEEEE---CTTSSCEEECCCSSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEE---EEEEEEEC-----EEEEE
T ss_pred             CeEEEEeC---CCCCccCcceecCCceEeccceEEECCCCHhHCEEEEEEEEcCCCceE---EEEEEEEc-----CCCce
Confidence            22333321   0000000000   00011246899999999999999999999887532   33444544     34556


Q ss_pred             EeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS  375 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~  375 (591)
                      ...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....          ..|.|.++..+|+|.|+|.|.|..|...
T Consensus       347 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~----------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  416 (816)
T 3dmk_A          347 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAE  416 (816)
T ss_dssp             EEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             eeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC----------CEEEEcCCCHHHCEEEEEEEECCCCcEE
Confidence            666667778999999999999999999999999998875432          2699999999999999999999999888


Q ss_pred             eeeEEEEe---cCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEe-----cCCeeEEE
Q psy12425        376 TKAELIIM---TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET-----SERHAILT  447 (591)
Q Consensus       376 ~~~~l~v~---~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-----~~~~~~l~  447 (591)
                      ....+.|.   .+|.+...+   ....+..|+.+.|.|.+.|.|.+.+.|+++|..+.....+....     ......|.
T Consensus       417 ~~~~l~v~~~~~~p~i~~~~---~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~  493 (816)
T 3dmk_A          417 ASAELKLGGRFDPPVIRQAF---QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLN  493 (816)
T ss_dssp             ECCEEECCCSSCCCEEEEEC---CCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEE
T ss_pred             EEEEEEEccccCCCceEecC---cceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEE
Confidence            77787774   344433222   23467889999999999999999999999999987766655432     12346799


Q ss_pred             EeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC--
Q psy12425        448 IRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM--  525 (591)
Q Consensus       448 i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~--  525 (591)
                      |.++..+|+|.|+|.|.|..|.....+.+.|..+|............+..+.|.|....    .+...+  .|...+.  
T Consensus       494 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g----~p~~~i--~W~k~~~~l  567 (816)
T 3dmk_A          494 ITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAG----YPIDSI--VWERDNRAL  567 (816)
T ss_dssp             ESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEEC----SSEEEE--EEEETTEES
T ss_pred             EeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecC----CCCCEE--EEEECCeEc
Confidence            99999999999999999999999999999998877432222233346778999998532    232223  3322211  


Q ss_pred             --CceEEeceeeeeEEEEcCcc-cCceEEEEEEEEcCCcCC
Q psy12425        526 --SSWIRVGNTRFTTMAITGLS-PGHQYEFRVYAENVYGRS  563 (591)
Q Consensus       526 --~~~~~~~~~~~~~~~i~~l~-~~~~Y~~~v~A~n~~G~~  563 (591)
                        .......  ....+.|.++. ..+.+.|+|.|.|..|.+
T Consensus       568 ~~~~~~~~~--~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~  606 (816)
T 3dmk_A          568 PINRKQKVF--PNGTLIIENVERNSDQATYTCVAKNQEGYS  606 (816)
T ss_dssp             CCSTTEEEC--TTSEEEESSCCHHHHCEEEEEEEEESSSCE
T ss_pred             ccCCceEEe--cCCeEEEEecCccccCEEEEEEEEECCCce
Confidence              1111111  12378999997 689999999999999864

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.9e-41  Score=343.49  Aligned_cols=516  Identities=14%  Similarity=0.164  Sum_probs=332.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCC-----------------ceeEEEeCCeEEEEEcccCCCCce
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD-----------------RFKFTVLDDYIIIFIKEIRKEDAG   64 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-----------------~~~~~~~~~~~~l~i~~~~~~d~g   64 (591)
                      |.++.+.+|++++|.|...+.+...+.|+|+........                 +.+.... ...+|.|.+++.+|+|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~-~~~sL~I~~v~~~D~G   84 (642)
T 1e07_A            6 STPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY-PNASLLIQNIIQNDTG   84 (642)
T ss_pred             ccCCcccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceeec-cCCcEEECCCCcccCc
Confidence            678899999999999998777778999999543211100                 0011111 1248999999999999


Q ss_pred             EEEEEEEcCC-eeeEEEEEEEEecCCCCCCCCc--ceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe
Q psy12425         65 DYTVNLSNSS-GSVSGTFTINITGLPGPPIGPL--DVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST  141 (591)
Q Consensus        65 ~Y~c~~~n~~-g~~~~~~~l~v~~~p~~p~~~~--~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~  141 (591)
                      .|+|.+.+.. +.....+.|.|...+..|....  ......+..+.|.|....  ....+.||.- ..........  ..
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~--p~~~v~W~~~-g~~l~~~~~~--~~  159 (642)
T 1e07_A           85 FYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPET--QDATYLWWVN-NQSLPVSPRL--QL  159 (642)
T ss_pred             EEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEECCC--CCeeEEEEEC-CeECCCCCce--EE
Confidence            9999998864 4446677888887655554211  122345677999998543  1222333221 1111111111  11


Q ss_pred             ecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcce
Q psy12425        142 TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRI  221 (591)
Q Consensus       142 ~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~  221 (591)
                      ......+.|.++...+.+.|+|.|.|..|..... .........+..+...|  .......|..++|.|.....+. ..+
T Consensus       160 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~-~~~l~V~~~p~~~~~~~--~~~~~~~G~~~~l~C~~~g~p~-~~i  235 (642)
T 1e07_A          160 SNGNRTLTLFNVTRNDTASYKCETQNPVSARRSD-SVILNVLYGPDAPTISP--LNTSYRSGENLNLSCHAASNPP-AQY  235 (642)
T ss_pred             cCCCCEEEEeCCCcccCeeEEEEEecCCCCcccc-eEEEEEEeCCCCcEEec--CCcccccCCEEEEEEEcCCCCC-cEE
Confidence            2235689999999999999999999987753221 11111111111000011  1223456889999998732221 122


Q ss_pred             EEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccc
Q psy12425        222 QGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRN  301 (591)
Q Consensus       222 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~  301 (591)
                      .+|             ...........|.|.++...|.|.|+|.|.|..|....+ ....+.+..  .+.+|.+... ..
T Consensus       236 ~W~-------------~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s-~~~~v~v~~--~~~~p~i~~~-~~  298 (642)
T 1e07_A          236 SWF-------------VNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRT-TVTTITVYA--EPPKPFITSN-NS  298 (642)
T ss_pred             EEE-------------ECCeEcccCCceEEecccccCCeEEEEEEEeCCCceEEe-eeEEEEEEc--cCCCCEEEcC-Cc
Confidence            222             111111235679999999999999999999988754322 233444432  1233444332 23


Q ss_pred             cceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeeeEE
Q psy12425        302 ANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL  380 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~l  380 (591)
                      ..+..|+.+.|.|.+.+.| +.+.|++++..+....++.+...+  .+|.|.++..+|+|.|+|.|.|..|.. +..+.|
T Consensus       299 ~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l  375 (642)
T 1e07_A          299 NPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVIL  375 (642)
T ss_pred             eeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCC--CEEEEeccCcccCeeEEEEEeCCCCCcceeeEEE
Confidence            3345578899999999987 699999999988777776665443  379999999999999999999999875 456788


Q ss_pred             EEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEE
Q psy12425        381 IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR  460 (591)
Q Consensus       381 ~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~  460 (591)
                      .|..+|......  .....+..|+.+.|.|.+.|.|.+.+.|+++|..+..           ...|.|.++...|.|.|+
T Consensus       376 ~V~~~p~~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~-----------~~~L~i~~~~~~d~G~Y~  442 (642)
T 1e07_A          376 NVLYGPDDPTIS--PSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH-----------TQELFISNITEKNSGLYT  442 (642)
T ss_pred             EEEcCCCCCeec--CCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC-----------CceEEEccCChhhCeEEE
Confidence            888777543211  1334678999999999999999999999999977642           356999999999999999


Q ss_pred             EEEEcCCCccceE--EEEEecCCCCCCCCC---eeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceee
Q psy12425        461 VVAENDLGMDSAI--VKIQISDRPDPPQFP---TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTR  535 (591)
Q Consensus       461 c~a~n~~g~~~~~--~~~~v~~~p~~p~~~---~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~  535 (591)
                      |.|.|..|....+  +.+.+..++.+|...   ......+..+.|.|....  ....+.+|.- ............. ..
T Consensus       443 C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~--~~~~i~W~~~-g~~l~~~~~~~~~-~~  518 (642)
T 1e07_A          443 CQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA--QNTTYLWWVN-GQSLPVSPRLQLS-NG  518 (642)
T ss_pred             EEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC--CCcEEEEEEC-CEeCCCCCcEEEc-CC
Confidence            9999999877544  556666554444321   112235678999998641  1112222221 1111111111111 12


Q ss_pred             eeEEEEcCcccCceEEEEEEEEcCCcCCC
Q psy12425        536 FTTMAITGLSPGHQYEFRVYAENVYGRSD  564 (591)
Q Consensus       536 ~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~  564 (591)
                      ...|.|.++...+.+.|+|.|.|..|...
T Consensus       519 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  547 (642)
T 1e07_A          519 NRTLTLFNVTRNDARAYVCGIQNSVSANR  547 (642)
T ss_pred             CcEEEEeecChhcCceEEEEeEcCCCCcc
Confidence            35899999999999999999999999643

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=7.8e-43  Score=363.64  Aligned_cols=523  Identities=15%  Similarity=0.188  Sum_probs=349.2

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEE------eecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRV------VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      ..+.+.+|+++.|.|.+.|.|.+.+.|+|++..      +....+.  ....  .+|.|.+++.+|+|.|+|.|.|..|.
T Consensus       256 ~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~--~~~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~  331 (816)
T 3dmk_A          256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRV--KQVS--GTLIIKDAVVEDSGKYLCVVNNSVGG  331 (816)
T ss_dssp             EEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSE--EEET--TEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             cceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCce--Eecc--ceEEECCCCHhHCEEEEEEEEcCCCc
Confidence            356789999999999999999999999995432      1122222  2222  38999999999999999999999998


Q ss_pred             eEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCC
Q psy12425         77 VSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEG  156 (591)
Q Consensus        77 ~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  156 (591)
                      .+..+.|.|..+|.....+.......+..+.|.|....    .+...+.+.+  .+.      ........+.|.++...
T Consensus       332 ~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g----~p~~~v~W~k--~g~------~~~~~~~~L~i~~v~~~  399 (816)
T 3dmk_A          332 ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTG----NPIKTVSWMK--DGK------AIGHSESVLRIESVKKE  399 (816)
T ss_dssp             EEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEE----ECCCEEEEEE--TTE------ECSCCSSEEEESSCCGG
T ss_pred             eEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEec----cCCCEEEEEE--CCE------ECCCCCCEEEEcCCCHH
Confidence            88888888876554333333444556778888886421    1111222211  110      00123567999999999


Q ss_pred             cEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCC-CCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc
Q psy12425        157 QEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG-IPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA  235 (591)
Q Consensus       157 ~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~  235 (591)
                      +.+.|+|.|.|..|.......   +.......+|.... ........+..+.|.|.....+. ..+. |...........
T Consensus       400 d~G~Y~C~a~n~~g~~~~~~~---l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~-p~v~-W~~~g~~l~~~~  474 (816)
T 3dmk_A          400 DKGMYQCFVRNDRESAEASAE---LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPT-PEIS-WELDGKKIANND  474 (816)
T ss_dssp             GCEEEEEEEECSSCEEEECCE---EECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSC-CEEE-EEETTEECCSCT
T ss_pred             HCEEEEEEEECCCCcEEEEEE---EEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCC-CEEE-EEECCEECCCCC
Confidence            999999999998775333221   11111111111100 11233456888999997643222 1222 222222222222


Q ss_pred             cEEEEeeecC----CceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEE
Q psy12425        236 WQRVNVAICA----PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQ  311 (591)
Q Consensus       236 ~~~~~~~~~~----~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  311 (591)
                      ..........    ...|.|.++...|.|.|+|.|.|..|...   ....+.+.     .+|.+ ..+....+..|+.+.
T Consensus       475 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~---~~~~l~V~-----~~p~~-~~~~~~~v~~G~~v~  545 (816)
T 3dmk_A          475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE---HSAKLNVY-----GLPYI-RQMEKKAIVAGETLI  545 (816)
T ss_dssp             TEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEE---EEEEEEEC-----SSCEE-CCCCCEEEETTCCEE
T ss_pred             CcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEE---EEEEEEEe-----cCCee-EccCCeEEecCCeEE
Confidence            2222111111    13589999999999999999999887543   34455554     34443 333456678999999


Q ss_pred             EEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEccee-cccceEEEEEEEeCCcce-eeeeEEEEecCCccc
Q psy12425        312 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY-GVDADEYVCRAVNKGGVK-STKAELIIMTAPKFN  389 (591)
Q Consensus       312 l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~~  389 (591)
                      |.|.+.+.|.+.+.|++++..+....+..+..++   +|.|.++. ..|+|.|+|.|.|..|.. .....+.+..+|.+.
T Consensus       546 l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~---~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~  622 (816)
T 3dmk_A          546 VTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRII  622 (816)
T ss_dssp             EECCEECSSEEEEEEEETTEESCCSTTEEECTTS---EEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCB
T ss_pred             EEEEecCCCCCEEEEEECCeEcccCCceEEecCC---eEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccc
Confidence            9999999999999999999988777666655444   79999998 689999999999998865 456778888777654


Q ss_pred             CCCCcccceeecCCCeEEEEEeeeccCCC-eEEEeeCCeEeeeccceEEE-ecCCeeEEEEeccCCCcceeEEEEEEcCC
Q psy12425        390 VPPRFRDTAYFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVE-TSERHAILTIRDASNVDTAPYRVVAENDL  467 (591)
Q Consensus       390 ~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~c~a~n~~  467 (591)
                      ....  ....+..|+.+.|.|.+.+.+.+ .+.|+++|..+.....+... .......|.|.++..+|+|.|+|.|.|..
T Consensus       623 ~~~~--~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  700 (816)
T 3dmk_A          623 PFAF--EEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLA  700 (816)
T ss_dssp             CCCC--CSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSS
T ss_pred             cccc--cccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCC
Confidence            3221  23446789999999999866554 99999999988665555444 33467899999999999999999999999


Q ss_pred             CccceEEEEEecCCCC---CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-CceEEe-----ceeeeeE
Q psy12425        468 GMDSAIVKIQISDRPD---PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-SSWIRV-----GNTRFTT  538 (591)
Q Consensus       468 g~~~~~~~~~v~~~p~---~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~-----~~~~~~~  538 (591)
                      |..+..+.|.|..+|.   .|....  ...+..+.|.|.....    +...+.+....... ......     .......
T Consensus       701 g~~~~~~~l~V~~~P~~~~~~~~~~--v~~G~~v~l~C~~~g~----P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~  774 (816)
T 3dmk_A          701 GHQQFTTPLNVYVPPRWILEPTDKA--FAQGSDAKVECKADGF----PKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGT  774 (816)
T ss_dssp             CEEEEEEEECEEEEEEEEECCCCEE--EETTCCEEEECEEEEE----SCCEEECCEECSSSTTCCBCCCCBTTEEEETTE
T ss_pred             ccEEEEEEEEEEeCCceeeecccce--ecCCCcEEEEEEEecC----CCCeEEEEecCCCCCccccccccCCCEEecCCE
Confidence            9999999999887763   333322  2346678888875321    11122222111000 000000     0112347


Q ss_pred             EEEcCcccCceEEEEEEEEcCCcCCCCC
Q psy12425        539 MAITGLSPGHQYEFRVYAENVYGRSDPS  566 (591)
Q Consensus       539 ~~i~~l~~~~~Y~~~v~A~n~~G~~~~s  566 (591)
                      +.|.++...+.+.|+|.|.|.+|.+..+
T Consensus       775 L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  802 (816)
T 3dmk_A          775 LHVDNIQKTNEGYYLCEAINGIGSGLSA  802 (816)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSSSCEEE
T ss_pred             EEECcCChhhCeEEEEEEEeCCCCCcEE
Confidence            9999999999999999999999976554

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=2.4e-40  Score=331.89  Aligned_cols=458  Identities=14%  Similarity=0.134  Sum_probs=308.7

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc---eEEEEECCEEe-----e---------cCCceeEEE--eCCeEEEEEcccCCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM---EVSLTKNGRVV-----Q---------SDDRFKFTV--LDDYIIIFIKEIRKED   62 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~---~v~W~~~~~~~-----~---------~~~~~~~~~--~~~~~~l~i~~~~~~d   62 (591)
                      |+.+.+.+|+++.|.|.+.+.|.+   .+.|+|++..+     .         ...|+.+..  .++..+|.|.+++.+|
T Consensus         7 P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D   86 (585)
T 2ocw_A            7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   86 (585)
T ss_pred             cceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCccc
Confidence            788999999999999999987644   89999998532     1         123444443  2345689999999999


Q ss_pred             ceEEEEEEEcCCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEec----C------
Q psy12425         63 AGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI----S------  132 (591)
Q Consensus        63 ~g~Y~c~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~----~------  132 (591)
                      +|.|+|.|.|..|..+..+.|.|...|.....+.......+..+.|.|..........+.||.-.....    .      
T Consensus        87 ~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~  166 (585)
T 2ocw_A           87 SGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVN  166 (585)
T ss_pred             CEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccC
Confidence            999999999998888888999999988766555556667888999999754321112244433210000    0      


Q ss_pred             ---CCceEEEEee---cCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeE
Q psy12425        133 ---MPHWICISTT---CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFV  206 (591)
Q Consensus       133 ---~~~~~~~~~~---~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v  206 (591)
                         .... .+...   .....+.|.++...+.+.|+|.|.|..|.......   +.+..   +  +|  ..+....+..+
T Consensus       167 ~~~~~r~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~---l~V~~---~--~p--~~~~~~~G~~v  235 (585)
T 2ocw_A          167 PNYTGRI-RLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD---LQVLK---P--EP--ELVYEDLRGSV  235 (585)
T ss_pred             ccccCcE-EEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEE---EEEcc---C--CC--ceeEEcCCCcE
Confidence               0011 11111   11237999999999999999999988775432221   11111   1  11  12334568889


Q ss_pred             EEEEecCCCCCCcceEEEEEEeeec----------C-----CCccEEEEee-ecCCceeeecCcccCCcEEEEEEEEcCC
Q psy12425        207 NLSWDKPLDDGGSRIQGYWIDKHEV----------G-----SDAWQRVNVA-ICAPSQINIPNLIEGRQYEFRVYAQNEA  270 (591)
Q Consensus       207 ~l~w~~~~~~~~~~~~~y~~~~~~~----------~-----~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~y~c~a~n~~  270 (591)
                      .|.|.... +....+..+|. ....          +     .......... ......|.|.++...|.|.|+|.|.|. 
T Consensus       236 ~l~C~~~~-~~~~~~~~~w~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-  312 (585)
T 2ocw_A          236 TFHCALGP-EVANVAKFLCR-QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-  312 (585)
T ss_pred             EEEEEcCC-CCCCceEEEEE-eCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-
Confidence            99998521 11111222221 0100          0     0000111100 011127999999999999999999995 


Q ss_pred             CCCCCC--CCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCee----EEec--CCc--cCCC-----
Q psy12425        271 GLSLPS--SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTI----SWLK--GSR--EITP-----  335 (591)
Q Consensus       271 g~~~~s--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v----~W~~--~~~--~~~~-----  335 (591)
                      |....+  .....+.+.     .+|.+...+....+.+|+.+.|.|.+.+.|.+.+    .|++  ++.  .+..     
T Consensus       313 g~~~~~~~~~~~~l~V~-----~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~  387 (585)
T 2ocw_A          313 GQLQEGSPIQAWQLFVN-----EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWV  387 (585)
T ss_pred             CCccccCceeeEEEEEe-----cccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeeccee
Confidence            433221  133445554     4566666667778899999999999999999877    7999  776  3322     


Q ss_pred             ----CCceEEEE--eCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEE
Q psy12425        336 ----SARHHIFA--EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK  409 (591)
Q Consensus       336 ----~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~  409 (591)
                          ..++.+..  ..+..+|.|.++..+|+|.|+|.| |..|.....+.|.|...|.....+   ....+..|+.+.|.
T Consensus       388 ~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~---~~~~v~~G~~v~L~  463 (585)
T 2ocw_A          388 KAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVP---GNVTAVLGETLKVP  463 (585)
T ss_pred             ecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccC---CceeEecCCcEEEE
Confidence                23444432  234456999999999999999999 988888888999998754433322   34567899999999


Q ss_pred             Eeee----ccCCCeEEEeeCCeEeeeccc-------eEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccc-eEEEEE
Q psy12425        410 IPFT----GYPKPKITWYRDNEVIESGGH-------FHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS-AIVKIQ  477 (591)
Q Consensus       410 c~~~----~~p~~~v~W~~~~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~-~~~~~~  477 (591)
                      |.+.    +.|.+.+.|+++|..+.....       ..+...+....|+|.++..+|+|.|+|.|.|..|... ..+.|.
T Consensus       464 C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~  543 (585)
T 2ocw_A          464 CHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVA  543 (585)
T ss_pred             EEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEE
Confidence            9997    778889999999987754321       1112234457999999999999999999999999775 448899


Q ss_pred             ecCCC
Q psy12425        478 ISDRP  482 (591)
Q Consensus       478 v~~~p  482 (591)
                      |..+|
T Consensus       544 V~~~p  548 (585)
T 2ocw_A          544 VEERK  548 (585)
T ss_pred             EEeee
Confidence            98877

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=100.00  E-value=7.8e-40  Score=299.78  Aligned_cols=294  Identities=37%  Similarity=0.613  Sum_probs=255.0

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCC-CceEEE-EeCCeEEEEEcceecccceEEEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-ARHHIF-AEGDTYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      +.+|.+...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+... .++.+. ..++..+|.|.+++.+|+|.|+|.|
T Consensus         2 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a   81 (305)
T 2nzi_A            2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (305)
T ss_dssp             CCCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEE
Confidence            35788888888899999999999999999999999999999887654 345544 3456679999999999999999999


Q ss_pred             EeCCcceeeeeEEEEecCCcccCCCCcc--cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeE
Q psy12425        368 VNKGGVKSTKAELIIMTAPKFNVPPRFR--DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI  445 (591)
Q Consensus       368 ~n~~g~~~~~~~l~v~~~p~~~~~~~~~--~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  445 (591)
                      .|..|.......|.|..+|.+..++...  ....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+........
T Consensus        82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~  161 (305)
T 2nzi_A           82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS  161 (305)
T ss_dssp             EETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEE
T ss_pred             EcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceE
Confidence            9999988888999998877765443221  34556889999999999999999999999999988777888877778899


Q ss_pred             EEEec-cCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCC
Q psy12425        446 LTIRD-ASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP  524 (591)
Q Consensus       446 l~i~~-~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~  524 (591)
                      |.|.+ +...|.|.|+|.|.|..|.....+.+.+..+|.+|..+.+......++.|+|.+|..+++..+..|.+++++..
T Consensus       162 l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~  241 (305)
T 2nzi_A          162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATT  241 (305)
T ss_dssp             EEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETT
T ss_pred             EEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCC
Confidence            99999 99999999999999999999999999999999999999988889999999999988788889999999999998


Q ss_pred             CCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCC
Q psy12425        525 MSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGME  583 (591)
Q Consensus       525 ~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~  583 (591)
                      ...|..........+.|.+|.+++.|.|+|+|.|.+|.|.+|..+..++++++.|..+.
T Consensus       242 ~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~~t~~~~p~~~~  300 (305)
T 2nzi_A          242 AERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMN  300 (305)
T ss_dssp             SCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCEECCC-------
T ss_pred             CCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCEEcCCccccccc
Confidence            89999887666789999999999999999999999999999999888888877776554

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=2.6e-41  Score=333.74  Aligned_cols=442  Identities=12%  Similarity=0.062  Sum_probs=281.4

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      ..+.+.+|++++|.|.+.+    .+.|+|++..+.        ..+...+|.|.+++.+|+|.|+|.+.|  |. +..+.
T Consensus        44 ~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~--------~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g~-~~~~~  108 (524)
T 2ec8_A           44 SDLIVRVGDEIRLLCTDPG----FVKWTFEILDET--------NENKQNEWITEKAEATNTGKYTCTNKH--GL-SNSIY  108 (524)
T ss_dssp             SEEECCTTSCEEEEEECTT----EEEEEEESSSCC--------EEECSSEEEESSCCSTTCEEEEEEETT--SC-EEEEE
T ss_pred             ceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc--------ccCccceEEEcccchhhCEEEEEeecC--Cc-ceEEE
Confidence            4678999999999999986    899999998661        122345899999999999999999999  43 66788


Q ss_pred             EEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEE-EE
Q psy12425         83 INITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY-LF  161 (591)
Q Consensus        83 l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y-~~  161 (591)
                      |.|..+|.....+.......+..+.|.|...... ...+.||..............   ......+.|..+...+.+ .|
T Consensus       109 l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~~v~W~~~~g~~l~~~~~~~---~~~~~~L~i~~~~~~d~G~~Y  184 (524)
T 2ec8_A          109 VFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE-VTNYSLKGCQGKPLPKDLRFI---PDPKAGIMIKSVKRAYHRLCL  184 (524)
T ss_dssp             EECCCSSCSBCCCCCCCEETTSCEEECCCBSCCC-CSCEEEECSSSCCCCSSCEEE---EETTTEEEEESCCGGGTTCEE
T ss_pred             EEECCCCcccccccceEEEcCCeEEEECcCCCCc-cceEEEEccCCcCcCCCCcee---ECCCccEEEeccchhhCCceE
Confidence            8888665544434445556788999999864311 122333221111111111111   123557899999999999 99


Q ss_pred             EEEEEccCCCCCCCCccCcccccCCCCCCCCCC-CCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCC---ccE
Q psy12425        162 HVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG-IPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD---AWQ  237 (591)
Q Consensus       162 ~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~---~~~  237 (591)
                      +|.|.|..|....... ..........+|.... ........|..++|.|.....+....+.+|.     .+..   ...
T Consensus       185 ~C~a~n~~~~~~s~~~-~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~-----~~~~~~~~~~  258 (524)
T 2ec8_A          185 HCSVDQEGKSVLSEKF-ILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKR-----ENSQTKLQEK  258 (524)
T ss_dssp             EEEEC----CCCCCCE-ECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEE-----TTCSCCCCEE
T ss_pred             EEEEEECCceEEEEEE-EEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEe-----CCCCCccccc
Confidence            9999987654332111 1111101111222111 1234567788999999875322211133221     1111   111


Q ss_pred             EEEe-----eecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeecc---ccceecccc
Q psy12425        238 RVNV-----AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR---NANAIQNHN  309 (591)
Q Consensus       238 ~~~~-----~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~g~~  309 (591)
                      ....     .......|.|.++...|.|.|+|.|.|..|...   ....+.+.     .+|.+...+.   ...+.+|+.
T Consensus       259 ~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~---~~~~l~V~-----~~p~~~~~~~~~~~~~v~~G~~  330 (524)
T 2ec8_A          259 YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN---VTTTLEVV-----DKGFINIFPMINTTVFVNDGEN  330 (524)
T ss_dssp             EEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEE---EEEEEEEE-----SSCEEEEEESSCSEEEECTTCC
T ss_pred             cccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceE---EEEEEEEe-----ccCceEeecCCCceEEEcCCCc
Confidence            1110     112346899999999999999999999887543   24455554     4566655433   567889999


Q ss_pred             EEEEEEEcCCCCCe-eEEecCCccCCCCC-ceEEEEeC----CeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        310 AQFQCTITGCPKPT-ISWLKGSREITPSA-RHHIFAEG----DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       310 ~~l~c~~~~~p~~~-v~W~~~~~~~~~~~-~~~~~~~~----~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      +.|.|.+.|.|.+. +.|++++..+.... ++....++    ...+|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       331 v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  410 (524)
T 2ec8_A          331 VDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN  410 (524)
T ss_dssp             EEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEe
Confidence            99999999999999 99999998887655 33332222    24589999999999999999999999999999999999


Q ss_pred             cCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeee--------ccceEEEecCCeeEEE----Eecc
Q psy12425        384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES--------GGHFHVETSERHAILT----IRDA  451 (591)
Q Consensus       384 ~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~--------~~~~~~~~~~~~~~l~----i~~~  451 (591)
                      .+|.+...+.      ...|   .|.|.+.|.|.|.+.|++++..+..        +.............+.    +...
T Consensus       411 ~~P~i~~~~~------~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~  481 (524)
T 2ec8_A          411 TKPEILTYDR------LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSS  481 (524)
T ss_dssp             EEEEEEEEEC------CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCC
T ss_pred             cCCeEeeccc------CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEE
Confidence            8888765432      2345   9999999999999999999766521        1111111111122222    4444


Q ss_pred             CCCcceeEEEEEEcCCCccceEEEEEecCCCCCCC
Q psy12425        452 SNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ  486 (591)
Q Consensus       452 ~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~  486 (591)
                      ..+|.|.|+|.|.|..|..+..+.|.|...|....
T Consensus       482 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~~~~  516 (524)
T 2ec8_A          482 AFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQI  516 (524)
T ss_dssp             SCCC-----CEEECSSCEEECCCCCCC--------
T ss_pred             EccCCEEEEEEEEcCCCceEEEEEEEEecCCHHHc
Confidence            46999999999999999999999999987765433

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=2e-39  Score=306.15  Aligned_cols=361  Identities=19%  Similarity=0.283  Sum_probs=246.3

Q ss_pred             Cceeee---ecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEccc-CCCCceEEEEEEEcCCeee
Q psy12425          2 PNALYI---PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-RKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         2 p~~~~v---~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~Y~c~~~n~~g~~   77 (591)
                      |..+.+   .+|+.+.|.|.+.|.|.|.|+|+|||..+......++...++  .|.|.++ +.+|+|.|+|.|.|..|..
T Consensus        12 P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g--~l~i~~~~~~~D~G~Y~C~A~N~~G~~   89 (384)
T 3kld_A           12 PSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTYQCIATNSFGTI   89 (384)
T ss_dssp             CCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETT--EEEEESCCHHHHCEEEEEEEEETTEEE
T ss_pred             CcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECC--EEEEcCCCCcccCEEEEEEEEcCcccE
Confidence            445555   589999999999999999999999999997665555555444  4666665 7899999999999999875


Q ss_pred             E-EEEEEEEecCCCCCCCC-cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcC
Q psy12425         78 S-GTFTINITGLPGPPIGP-LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTE  155 (591)
Q Consensus        78 ~-~~~~l~v~~~p~~p~~~-~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  155 (591)
                      . ....+.+...+.....+ ..+....+..+.|.|.++.                                         
T Consensus        90 ~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~-----------------------------------------  128 (384)
T 3kld_A           90 VSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPP-----------------------------------------  128 (384)
T ss_dssp             ECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCS-----------------------------------------
T ss_pred             EecceEEEEecccccccCCCCceeEEcCCCeEEecCCCC-----------------------------------------
Confidence            3 33555554433222111 0111122223333332111                                         


Q ss_pred             CcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc
Q psy12425        156 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA  235 (591)
Q Consensus       156 ~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~  235 (591)
                                                                    ....+.+.|....    .++.         ... 
T Consensus       129 ----------------------------------------------~~~~~~~~W~~~~----~~~~---------~~~-  148 (384)
T 3kld_A          129 ----------------------------------------------HSGELSYAWIFNE----YPSY---------QDN-  148 (384)
T ss_dssp             ----------------------------------------------EESCEEEEEEETT----EECC---------CSS-
T ss_pred             ----------------------------------------------CCCCeEEEEEECC----CCCE---------eec-
Confidence                                                          0011445665421    0000         000 


Q ss_pred             cEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcC--CCccCCCeEE-eeccccceeccccEEE
Q psy12425        236 WQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD--PMAAKAPEII-VPLRNANAIQNHNAQF  312 (591)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~--~~~~~~p~~~-~~~~~~~~~~g~~~~l  312 (591)
                       ...  .......|.|.++...|.|.|+|.|.|..|..........+.+..  .....+|.+. ..+....+.+|+.+.|
T Consensus       149 -~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l  225 (384)
T 3kld_A          149 -RRF--VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL  225 (384)
T ss_dssp             -SEE--ECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEE
T ss_pred             -cEE--EEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEE
Confidence             000  112345789999999999999999999876432211112222110  0011233333 2344566789999999


Q ss_pred             EEEEcCCCCCeeEEecC-CccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCC
Q psy12425        313 QCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP  391 (591)
Q Consensus       313 ~c~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~  391 (591)
                      .|.+.|.|.|.+.|+++ +..+....  ..  ......|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+...
T Consensus       226 ~C~~~g~P~p~i~W~k~~~~~~~~~~--~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~  301 (384)
T 3kld_A          226 ECFALGNPVPTILWRRADGKPIARKA--RR--HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQI  301 (384)
T ss_dssp             EEEEEEESCCEEEEEETTCCCCCTTC--EE--CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC
T ss_pred             EEEEeecCCCcEEEEeCCCccccccc--ee--cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccC
Confidence            99999999999999985 44443321  11  122337999999999999999999999999988899999988876544


Q ss_pred             CCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccc
Q psy12425        392 PRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS  471 (591)
Q Consensus       392 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~  471 (591)
                      +   ....+..|+.+.|.|.+.|.|.|.+.|+++|..+....++.+.    ...|.|.++..+|+|.|+|.|.|..|...
T Consensus       302 ~---~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  374 (384)
T 3kld_A          302 I---NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGVIF  374 (384)
T ss_dssp             C---CCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             C---CceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe----CCEEEEeecChhhCEEEEEEEEeCCceEE
Confidence            3   3456788999999999999999999999999998776666553    34899999999999999999999999999


Q ss_pred             eEEEEEec
Q psy12425        472 AIVKIQIS  479 (591)
Q Consensus       472 ~~~~~~v~  479 (591)
                      .++.|.|.
T Consensus       375 ~~a~L~V~  382 (384)
T 3kld_A          375 SSAELSVI  382 (384)
T ss_dssp             EEEEEEEC
T ss_pred             eceEEEEe
Confidence            88888875

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=3.1e-38  Score=299.95  Aligned_cols=359  Identities=17%  Similarity=0.184  Sum_probs=261.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEEeec-----CCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRVVQS-----DDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      |.+..+.+|+++.|.|.+.|.|.+.|.|+|+  |..+..     ..++.+........|.|.+++.+|+|.|+|.|.|..
T Consensus         7 ~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   86 (389)
T 2jll_A            7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI   86 (389)
T ss_dssp             CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSS
T ss_pred             cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCC
Confidence            5677899999999999999999999999999  888865     356666655667899999999999999999999988


Q ss_pred             eeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCc
Q psy12425         75 GSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLT  154 (591)
Q Consensus        75 g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  154 (591)
                      |..+..+.|.|..+|.                                                                
T Consensus        87 g~~~~~~~l~V~~~P~----------------------------------------------------------------  102 (389)
T 2jll_A           87 GGHQKSMYLDIEYAPK----------------------------------------------------------------  102 (389)
T ss_dssp             CEEEEEEEEEEEEEEE----------------------------------------------------------------
T ss_pred             CCcceEEEEEEEeCCE----------------------------------------------------------------
Confidence            8765555554431000                                                                


Q ss_pred             CCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCC
Q psy12425        155 EGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD  234 (591)
Q Consensus       155 ~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~  234 (591)
                                                                           +  ..                      
T Consensus       103 -----------------------------------------------------~--~~----------------------  105 (389)
T 2jll_A          103 -----------------------------------------------------F--IS----------------------  105 (389)
T ss_dssp             -----------------------------------------------------E--CC----------------------
T ss_pred             -----------------------------------------------------E--ec----------------------
Confidence                                                                 0  00                      


Q ss_pred             ccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEE
Q psy12425        235 AWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQC  314 (591)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c  314 (591)
                                                                               ++      ....+.+|+.+.|.|
T Consensus       106 ---------------------------------------------------------~~------~~~~~~~g~~~~l~C  122 (389)
T 2jll_A          106 ---------------------------------------------------------NQ------TIYYSWEGNPINISC  122 (389)
T ss_dssp             ---------------------------------------------------------SC------CEEEECTTCCEEEEE
T ss_pred             ---------------------------------------------------------Cc------ceEEeccCCEEEEEE
Confidence                                                                     00      001134566788999


Q ss_pred             EEcCCCCCeeEEecCCccCCCCC--ceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCC
Q psy12425        315 TITGCPKPTISWLKGSREITPSA--RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP  392 (591)
Q Consensus       315 ~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~  392 (591)
                      .+.|.|.+.+.|++++..+....  ++.+...+...+|.|.++...|.|.|+|.|.|..|.......+.+...|..+.  
T Consensus       123 ~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~--  200 (389)
T 2jll_A          123 DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPY--  200 (389)
T ss_dssp             CEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCE--
T ss_pred             EEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCc--
Confidence            99999999999999998887654  56666677778999999999999999999999999988888888766554221  


Q ss_pred             CcccceeecCCCeEEEEEeee----ccCCC--eEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        393 RFRDTAYFDKGENVVVKIPFT----GYPKP--KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       393 ~~~~~~~~~~g~~~~l~c~~~----~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                       . .......+..+.|.|...    +.|..  .+.|.+++..    ....+........+.|.++.+.+.|.|+|.|.|.
T Consensus       201 -~-~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~  274 (389)
T 2jll_A          201 -G-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASE----IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG  274 (389)
T ss_dssp             -E-EEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCS----CCEEEECSTTCSEEEECSCCTTCEEEEEEEEEES
T ss_pred             -c-eEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCc----ccEEeeccCCcceEEECCccCCCEEEEEEEEEcC
Confidence             1 111223456788888642    22322  5778776542    1222333445688999999999999999999999


Q ss_pred             CCccceEEEEEecC----CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEE
Q psy12425        467 LGMDSAIVKIQISD----RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMA  540 (591)
Q Consensus       467 ~g~~~~~~~~~v~~----~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~  540 (591)
                      .|.+..+..+.+..    +|.+|. +.+...+.+++.|+|.+|. ++++++.+|.|+|+......|...  .......+.
T Consensus       275 ~G~~~~s~~~~~~t~~~~~p~~p~-~~~~~~~~~~v~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~  352 (389)
T 2jll_A          275 KGQGDYSKIEIFQTLPVREPSPPS-IHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHII  352 (389)
T ss_dssp             SCBCCCCCCEEEECCCCCCCCCCC-EEEEEETTTEEEEEECCCC-CCSSCCCEEEEEEEC-----CCBCCEECTTCCEEE
T ss_pred             CccCCCCcceEEEecCCCCCCCCc-cccccCcCCEEEEEEECCC-CCCCcccEEEEEEEeCCCCcceeEeeccCCcceEE
Confidence            99875444343333    566664 5555678999999999765 566789999999998766667532  234456899


Q ss_pred             EcCcccCceEEEEEEEEcCCcCCCCCCCcceEEecc
Q psy12425        541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG  576 (591)
Q Consensus       541 i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~  576 (591)
                      |.+|.+++.|.|+|+|.|..|.|++|..  .++|.+
T Consensus       353 i~~L~~~t~Y~~~V~A~n~~G~s~~s~~--~~~T~~  386 (389)
T 2jll_A          353 LEHLQWTMGYEVQITAANRLGYSEPTVY--EFSMPP  386 (389)
T ss_dssp             ECSCCTTCEEEEEEEEEC-CCBCCCEEE--EEECCC
T ss_pred             eCCcCCCCEEEEEEEEEcCCcCCCceee--EecCCC
Confidence            9999999999999999999999999865  344543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=314.87  Aligned_cols=437  Identities=11%  Similarity=0.066  Sum_probs=259.7

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.+++|.+|++++|.|.+.+.|..++.|++++..+.....+... .....+|.|.+++++|+|.|+|.|.|..|.....+
T Consensus        55 ~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~-~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~  133 (527)
T 3qs9_E           55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF  133 (527)
T ss_dssp             -CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred             eeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCC-cceEEEEEECcCChhhCeeEEEEEEeccccEEEEE
Confidence            34789999999999999998888999999999987655444321 12335799999999999999999999988877777


Q ss_pred             EEEEecCCC-CCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEE
Q psy12425         82 TINITGLPG-PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYL  160 (591)
Q Consensus        82 ~l~v~~~p~-~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  160 (591)
                      .|.|...+. .+..|.  ....+..+.|.|...    |.+...+.+.+..........  ............+.+.+.+.
T Consensus       134 ~v~v~~~~~~~~~~p~--~~~~~~~~~L~C~a~----G~P~P~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~G~  205 (527)
T 3qs9_E          134 TVSIRNTLLYTLRRPY--FRKMENQDALVCISE----SVPEPIVEWVLCDSQGESCKE--ESPAVVKKEEKVLHELFGTD  205 (527)
T ss_dssp             EEEEC-----CEEEEE--EEECSSSSCEEEEEE----ESSCCEEEEEEC---------------CEEECCSEECCCCSSC
T ss_pred             EEEECCceeeccCCCc--EEecCCceEEEEEEc----eecCCeEEEEECCCCCccccc--cCCcEEEEeeeeccccCCEE
Confidence            777652111 111111  112234445556421    111112222211111000000  00011111122344677889


Q ss_pred             EEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEE
Q psy12425        161 FHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN  240 (591)
Q Consensus       161 ~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~  240 (591)
                      |+|.|.|..|.......  .+....  .+..+|  .......|..+.|.|..........+.+| ...............
T Consensus       206 Y~C~A~N~~G~~~~~~~--~l~V~~--~p~~~p--~~~~v~~G~~v~L~C~~~~g~p~p~i~W~-k~g~~l~~~~~~~~~  278 (527)
T 3qs9_E          206 IRCCARNELGRECTRLF--TIDLNQ--TPQTTL--PQLFLKVGEPLWIRCKAVHVNHGFGLTWE-LENKALEEGNYFEMS  278 (527)
T ss_dssp             EEEEEECSSCEEEEECE--EEESSS--CCCCSC--CEEEECTTSCEEEEEEEEESSSCCCEEEE-CSSSCCCGGGEEEEE
T ss_pred             EEEEEEeCCCcccceEE--EEEEec--cCccCC--CceEEeCCCeEEEEEEEccCCCCeEEEEE-ECCEECCCCceeeee
Confidence            99999999886543211  111111  111122  24556678899999987411111223322 111111111111111


Q ss_pred             ee-----ecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeec--cccceeccccEEEE
Q psy12425        241 VA-----ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL--RNANAIQNHNAQFQ  313 (591)
Q Consensus       241 ~~-----~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~  313 (591)
                      ..     ......|.|.++...|.|.|+|.|.|.      ......+.+.     .+|.+...+  ....+.+|+.+.|.
T Consensus       279 ~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~------~~~~~~L~V~-----~~p~i~~~~~~~~~~v~~G~~v~L~  347 (527)
T 3qs9_E          279 TYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH------PSQSALVTIV-----EKGFINATNSSEDYEIDQYEEFCFS  347 (527)
T ss_dssp             EEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE------EEEEEEEEEC-------CEEECCCSCCEECCCTTCCCCEE
T ss_pred             eeccCcceeeEEEEEEccCCcccCeEEEEEEEeC------CCceEEEEEE-----ccCccccccCcccEEEcCCCeEEEE
Confidence            11     112346999999999999999999887      1234555554     344444332  24567889999999


Q ss_pred             EEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCC
Q psy12425        314 CTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR  393 (591)
Q Consensus       314 c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~  393 (591)
                      |.+.|.|.|.+.|++++..+....++..    ...+|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+...+.
T Consensus       348 C~~~g~P~p~i~W~k~g~~l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~~  423 (527)
T 3qs9_E          348 VRFKAYPQIRCTWTFSRKSFPCEQKGLD----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEAS  423 (527)
T ss_dssp             EEEEEESCCEEEEEETTEEEECBCCBCS----SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECCC
T ss_pred             EEEEecCCCEEEEEECCEECcCCccccc----CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeCC
Confidence            9999999999999999988765444221    234799999999999999999999999998899999998887754431


Q ss_pred             cccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccc------e-----EEEecCCeeEEEEeccCCCcceeEEEE
Q psy12425        394 FRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH------F-----HVETSERHAILTIRDASNVDTAPYRVV  462 (591)
Q Consensus       394 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~------~-----~~~~~~~~~~l~i~~~~~~~~g~y~c~  462 (591)
                               +  ..|.|.+.|.|.|.+.|++++........      .     ..........++|.-....|.|.|+|.
T Consensus       424 ---------~--~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~  492 (527)
T 3qs9_E          424 ---------A--SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCC  492 (527)
T ss_dssp             ---------C--E---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEE
T ss_pred             ---------C--CEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEE
Confidence                     2  35799999999999999987654321110      0     011111223334444445699999999


Q ss_pred             EEcCCCccceEEEEEecC
Q psy12425        463 AENDLGMDSAIVKIQISD  480 (591)
Q Consensus       463 a~n~~g~~~~~~~~~v~~  480 (591)
                      |.|..|..+..+.|.+..
T Consensus       493 A~N~~G~~~~~~~L~V~~  510 (527)
T 3qs9_E          493 AYNSLGTSCETILLNSPG  510 (527)
T ss_dssp             EECSSCEEEEEEEC----
T ss_pred             EEeCCCCceeEEEEecCC
Confidence            999999999998887654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=9.7e-38  Score=298.21  Aligned_cols=367  Identities=21%  Similarity=0.336  Sum_probs=259.6

Q ss_pred             CceeeeecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEccc-----CCCCceEEEEEEEcCCe
Q psy12425          2 PNALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-----RKEDAGDYTVNLSNSSG   75 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~Y~c~~~n~~g   75 (591)
                      |.++.+.+|++++|.|.+.+ .|.+.+.|+|+|..+......+.....+. .|.|.++     +.+|+|.|+|.+.|..+
T Consensus        28 P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~-~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~  106 (403)
T 3laf_A           28 PSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG-SLLIQNILHSRHHKPDEGLYQCEASLGDS  106 (403)
T ss_dssp             CCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTS-CEEECSCCCBTTBCSSCEEEEEEEECGGG
T ss_pred             CCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCC-cEEEeeeeccCCCCCcceEEEEEEEeCCC
Confidence            78899999999999999987 68889999999999876533333333332 5777777     77899999999996543


Q ss_pred             ee--EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCC
Q psy12425         76 SV--SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGL  153 (591)
Q Consensus        76 ~~--~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  153 (591)
                      ..  +..+.+.|..+|.....+.......+..+.|                                             
T Consensus       107 ~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l---------------------------------------------  141 (403)
T 3laf_A          107 GSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLL---------------------------------------------  141 (403)
T ss_dssp             CEEECCCEEEEECCCCEECSCCCCEEEETTSCEEE---------------------------------------------
T ss_pred             ccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEE---------------------------------------------
Confidence            33  3346666655432222222222223333333                                             


Q ss_pred             cCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCC
Q psy12425        154 TEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGS  233 (591)
Q Consensus       154 ~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~  233 (591)
                              .|.+..                                   .....+.|......    +.       ....
T Consensus       142 --------~C~~~~-----------------------------------~p~~~v~W~~~~~~----~~-------~~~~  167 (403)
T 3laf_A          142 --------KCEVIG-----------------------------------DPMPTIHWQKNQQD----LN-------PIPG  167 (403)
T ss_dssp             --------CCCEEC-----------------------------------SSCCEEEEEESSSB----CC-------CCTT
T ss_pred             --------EEEEcc-----------------------------------cCCCeEEEEECCEe----cc-------ccCC
Confidence                    333320                                   00013455442110    00       0000


Q ss_pred             CccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCC-ccCCCeEEeeccccceeccccEEE
Q psy12425        234 DAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPM-AAKAPEIIVPLRNANAIQNHNAQF  312 (591)
Q Consensus       234 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~g~~~~l  312 (591)
                      ..  .  ........|.|.++...|.|.|+|.|.|..|....  ....+.+.... ...++.+...+....+.+|+.+.|
T Consensus       168 ~~--~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~--~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l  241 (403)
T 3laf_A          168 DS--R--VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTG--NEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVL  241 (403)
T ss_dssp             CC--S--EEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBC--CCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEE
T ss_pred             ce--E--EEEcCCceEEEcccccccCEEEEEEEEcCCCceec--cceeEEEecCCCcccCceEecCCCceEecCCCcEEE
Confidence            00  0  01123457999999999999999999998765332  23444443221 112234455566677889999999


Q ss_pred             EEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCC
Q psy12425        313 QCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP  392 (591)
Q Consensus       313 ~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~  392 (591)
                      .|.+.+.|.+.+.|++++..+...........+.  +|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+...+
T Consensus       242 ~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~  319 (403)
T 3laf_A          242 ECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHP  319 (403)
T ss_dssp             CCEEEEESCCEEEEEETTEECCCSSSSEEEETTT--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECC
T ss_pred             EEEcCCCCCCeEEEEECCeeccCCCceEEECCcc--EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecC
Confidence            9999999999999999998876544333333332  79999999999999999999999999999999999988876554


Q ss_pred             CcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425        393 RFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA  472 (591)
Q Consensus       393 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~  472 (591)
                         ....+..|+.+.|.|.+.|.|.+.+.|+++|..+.....+.+.   ....|.|.++..+|.|.|+|.|.|..|....
T Consensus       320 ---~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  393 (403)
T 3laf_A          320 ---SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVAENEAGNAQS  393 (403)
T ss_dssp             ---CCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEE---TTTEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ---cceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEe---cCccEEEeccccccCEEEEEEEEcCCceEEE
Confidence               3355788999999999999999999999999988776666554   3467999999999999999999999999999


Q ss_pred             EEEEEecCCC
Q psy12425        473 IVKIQISDRP  482 (591)
Q Consensus       473 ~~~~~v~~~p  482 (591)
                      .+.|.|..||
T Consensus       394 ~~~l~V~~P~  403 (403)
T 3laf_A          394 SAQLIVPKPA  403 (403)
T ss_dssp             EEEEECCCC-
T ss_pred             EEEEEEeCCC
Confidence            9999998765

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=3.9e-38  Score=301.20  Aligned_cols=367  Identities=20%  Similarity=0.284  Sum_probs=259.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEc----ccCCCCceEEEEEEEcCCeee
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIK----EIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~----~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      +.++.+.+|+++.|.|.+.|.|.+.+.|+|+|..+......++.......+|.|.    +++.+|+|.|+|.|.|..|..
T Consensus        24 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~  103 (404)
T 3p3y_A           24 AKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTA  103 (404)
T ss_dssp             CTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEE
T ss_pred             CccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeE
Confidence            4567899999999999999999999999999998865533333333333455554    888999999999999998887


Q ss_pred             E-EEEEEEEecCCCCCCCCcc-eEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcC
Q psy12425         78 S-GTFTINITGLPGPPIGPLD-VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTE  155 (591)
Q Consensus        78 ~-~~~~l~v~~~p~~p~~~~~-~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  155 (591)
                      . ..+.|.|...|..+..... .....+..+.|.|..+.   +.+                                   
T Consensus       104 ~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~---~~p-----------------------------------  145 (404)
T 3p3y_A          104 LSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP---GLP-----------------------------------  145 (404)
T ss_dssp             EEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCC---CSS-----------------------------------
T ss_pred             eeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCC---CCC-----------------------------------
Confidence            4 6688888877655443211 22233444444443211   000                                   


Q ss_pred             CcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc
Q psy12425        156 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA  235 (591)
Q Consensus       156 ~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~  235 (591)
                                                                       ...+.|....   ...+          ....
T Consensus       146 -------------------------------------------------~~~v~W~~~~---~~~~----------~~~~  163 (404)
T 3p3y_A          146 -------------------------------------------------SPVIFWMSSS---MEPI----------TQDK  163 (404)
T ss_dssp             -------------------------------------------------CCEEEEECTT---SCBC----------CCCS
T ss_pred             -------------------------------------------------CCeEEEeCCC---cccc----------CCCC
Confidence                                                             0234555421   0000          0000


Q ss_pred             cEEEEeeecCCceeeecCcccCC-cEEEEEEEEcCCCCCCCCCCcceEEEcC--CCccCCCeEEeec---cccceecccc
Q psy12425        236 WQRVNVAICAPSQINIPNLIEGR-QYEFRVYAQNEAGLSLPSSASNSVQIKD--PMAAKAPEIIVPL---RNANAIQNHN  309 (591)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~~~-~~~y~c~a~n~~g~~~~s~~~~~~~~~~--~~~~~~p~~~~~~---~~~~~~~g~~  309 (591)
                      ..    .......|.|.++...| .|.|+|.|.|..|..........+.+..  .....+|.+....   ....+.+|+.
T Consensus       164 ~~----~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~  239 (404)
T 3p3y_A          164 RV----SQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMD  239 (404)
T ss_dssp             SE----EECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSC
T ss_pred             cE----EEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCC
Confidence            00    11234568899999999 5999999999877543333334444432  1122334443322   2355789999


Q ss_pred             EEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCccc
Q psy12425        310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN  389 (591)
Q Consensus       310 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~  389 (591)
                      +.|.|.+.+.|.+.+.|++++..+..... ....  ...+|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+.
T Consensus       240 v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  316 (404)
T 3p3y_A          240 LLLECIASGVPTPDIAWYKKGGDLPSDKA-KFEN--FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWL  316 (404)
T ss_dssp             EEEECCBCCSSCCEEEEEETTBCCCTTTE-EEEG--GGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEE
T ss_pred             EEEEEEECCCCCCcEEEEECCEECCCCcc-cccc--cCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeee
Confidence            99999999999999999999988865543 2221  12379999999999999999999999999889999999988776


Q ss_pred             CCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccc-eEEEecCCeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        390 VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH-FHVETSERHAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       390 ~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      ..+   ....+..|+.+.|.|.+.|.|.|.+.|+++|..+..... .....  ....|.|.++..+|+|.|+|.|.|..|
T Consensus       317 ~~~---~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G  391 (404)
T 3p3y_A          317 DEP---KNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV--AGDTIIFRDTQISSRAVYQCNTSNEHG  391 (404)
T ss_dssp             ECC---CCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEE--ETTEEEESSCCSSCCCEEEEEEEETTE
T ss_pred             ccC---CcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEe--cCCEEEEeecCHHHCEEEEEEEEeCCC
Confidence            554   335678899999999999999999999999998865431 11111  235899999999999999999999999


Q ss_pred             ccceEEEEEecC
Q psy12425        469 MDSAIVKIQISD  480 (591)
Q Consensus       469 ~~~~~~~~~v~~  480 (591)
                      .....+.|.|.+
T Consensus       392 ~~~~~~~l~V~d  403 (404)
T 3p3y_A          392 YLLANAFVSVLD  403 (404)
T ss_dssp             EEEEEEEEEEC-
T ss_pred             cEEEEEEEEEEe
Confidence            999988888754

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=6.6e-37  Score=290.86  Aligned_cols=286  Identities=25%  Similarity=0.366  Sum_probs=242.4

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecC--CccCCC-----CCceEEEEeCCeEEEEEcceecccceEEEE
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREITP-----SARHHIFAEGDTYTLIINSVYGVDADEYVC  365 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c  365 (591)
                      |.+.. +.+..+.+|+.+.|.|.+.|.|.+.+.|+++  +..+..     ..++.+.......+|.|.++..+|+|.|+|
T Consensus         2 P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   80 (389)
T 2jll_A            2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC   80 (389)
T ss_dssp             CEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEE
T ss_pred             CeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEE
Confidence            55555 4566788899999999999999999999998  776654     356666666667799999999999999999


Q ss_pred             EEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeecc--ceEEEecCCe
Q psy12425        366 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG--HFHVETSERH  443 (591)
Q Consensus       366 ~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~  443 (591)
                      .|.|..|..+..+.|.|..+|.+..++   ....+..|+.+.|.|.+.|.|.+.+.|++++..+....  ++.+...+..
T Consensus        81 ~a~n~~g~~~~~~~l~V~~~P~~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~  157 (389)
T 2jll_A           81 EAASRIGGHQKSMYLDIEYAPKFISNQ---TIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK  157 (389)
T ss_dssp             EEECSSCEEEEEEEEEEEEEEEECCSC---CEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSC
T ss_pred             EEEeCCCCcceEEEEEEEeCCEEecCc---ceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCE
Confidence            999999999999999999998876544   23456889999999999999999999999999887554  5666666678


Q ss_pred             eEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeC
Q psy12425        444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH  523 (591)
Q Consensus       444 ~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~  523 (591)
                      ..|.|.++...|.|.|+|.|.|..|.....+.+.+..+|.+|..+.+...+..++.|+|.+|..+++.++..|.++|+..
T Consensus       158 ~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~  237 (389)
T 2jll_A          158 MILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV  237 (389)
T ss_dssp             EEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEET
T ss_pred             EEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEEC
Confidence            89999999999999999999999999988899999999999988888888899999999988777888999999999998


Q ss_pred             CCCceEEec-eeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCC
Q psy12425        524 PMSSWIRVG-NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGME  583 (591)
Q Consensus       524 ~~~~~~~~~-~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~  583 (591)
                      +...|.... ......+.|.+|.+++.|.|+|+|.|..|.|.+|....+ ++.+..|+.+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~-~t~~~~~p~~p  297 (389)
T 2jll_A          238 ASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF-QTLPVREPSPP  297 (389)
T ss_dssp             TCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEE-ECCCCCCCCCC
T ss_pred             CCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEE-EecCCCCCCCC
Confidence            888887653 334578999999999999999999999999999987554 44443344433

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=326.89  Aligned_cols=547  Identities=14%  Similarity=0.089  Sum_probs=351.3

Q ss_pred             CCceeeeecCCeEEEEEEec-------cCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          1 MPNALYIPEGDNTKVKIFYA-------GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~-------~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      +|.+.+|.+|++++|.|.+.       +.+.+.|.|++||+.+..+. +++ ..+....|+|.++...|++ |.|.+...
T Consensus         9 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~~-~~~-~~~~~~~l~i~~~~~~~~~-y~C~~~~~   85 (589)
T 3l5h_A            9 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQ-YTI-INRTASSVTFTDIASLNIQ-LTCNILTF   85 (589)
T ss_dssp             SCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGGG-CBC-CSSSCCBCCCCCCCSSCCC-CCCC-CCT
T ss_pred             ecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChHH-ccc-cCCcEeEEEEecCCCccee-eEEecccC
Confidence            48889999999999999997       56778999999998776552 222 2233568999999998765 77888642


Q ss_pred             C--eeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe-ecCcceEEE
Q psy12425         74 S--GSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST-TCHDTTFIV  150 (591)
Q Consensus        74 ~--g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~i  150 (591)
                      .  +.....+.|.+..+|.+|.+ +.+......+++++|.++...  ..+..|.+.+..... .+..+.. ......+.+
T Consensus        86 ~~~~~~~~~~~l~v~~pP~~P~n-l~c~~~~~~~~~~~W~~~~~~--~~~~~y~l~~~~~~~-~~~~c~~~~~~~~~c~~  161 (589)
T 3l5h_A           86 GQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRET--HLETNFTLKSEWATH-KFADCKAKRDTPTSCTV  161 (589)
T ss_dssp             TCC-CCCCCCCCCC-CCCCCCEE-EEEEEETTSCEEEEEECCSCC--SSCEEEEECCBCSSS-BCCCEECBTTBSSCCBC
T ss_pred             CCcccEEEeEEEeccCCCCCCEe-eEEEECCCceEEEEECCCCcC--CcCceEEEEEEEcCC-CcccCCCCCCCcEEEEE
Confidence            2  12234466777778887776 567777778999999987632  356789998765432 2332322 223455666


Q ss_pred             c-CCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeE--EeecCCeEEEEEecCCCCCCcceEEEEEE
Q psy12425        151 Q-GLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVV--TQVGGDFVNLSWDKPLDDGGSRIQGYWID  227 (591)
Q Consensus       151 ~-~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~v~l~w~~~~~~~~~~~~~y~~~  227 (591)
                      . ++.++..|.|+|.|.|..|.+......   ........|.+|..+.+  ......++.|+|.+|...+ ..+..|.++
T Consensus       162 ~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~---~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~-~~~~~Y~v~  237 (589)
T 3l5h_A          162 DYSTVYFVNIEVWVEAENALGKVTSDHIN---FDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKS-VIILKYNIQ  237 (589)
T ss_dssp             CSCCCSSSCEEECEEEEESSCCBCCCCEE---ECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGG-TSCEEEEEE
T ss_pred             CCCCchheeEEEEEEEEeCCCCcccccEE---EccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCC-eeeEEEEEE
Confidence            6 788999999999999999986432211   11112236778888877  3456789999999876543 367899999


Q ss_pred             eeecCCCccEEEEee--ecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCC--CccCCCeEEeeccccc
Q psy12425        228 KHEVGSDAWQRVNVA--ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP--MAAKAPEIIVPLRNAN  303 (591)
Q Consensus       228 ~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~--~~~~~p~~~~~~~~~~  303 (591)
                      ++..+...|......  ......+.+.+|.++..|.|+++|.|..|.+.++..+..+.+...  .+..+|..........
T Consensus       238 ~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~~v~~~~  317 (589)
T 3l5h_A          238 YRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSH  317 (589)
T ss_dssp             EEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEEECCSCS
T ss_pred             ECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcEEEEeecCc
Confidence            999887788765321  223478899999999999999999999888776544444332221  1123444322211111


Q ss_pred             eeccccEEEEEEEcC--CC-----CCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceee
Q psy12425        304 AIQNHNAQFQCTITG--CP-----KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST  376 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~--~p-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~  376 (591)
                      ......+.|.|....  ..     .-.|.|...+....     ....  ....+.+  +.+...|.+++.|.|..|....
T Consensus       318 ~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~~-----~~~~--~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~  388 (589)
T 3l5h_A          318 TQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ-----NYTV--NATKLTV--NLTNDRYLATLTVRNLVGKSDA  388 (589)
T ss_dssp             STTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCCC-----BCCC--SSSCCEE--CCCSSCCCEEEEEEBTTBCCCC
T ss_pred             CCCcceEEEEEeeCCchhccCceeeEEEEEecCCCCce-----eecc--CCceEEE--EeCCCCEEEEEEEEeCCccCCC
Confidence            234467788776411  11     11344533322111     0101  1112333  5678889999999999998755


Q ss_pred             eeEEEEecCCcc-cCCCCcccceeecCCCeEEEEEeeeccC--CCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCC
Q psy12425        377 KAELIIMTAPKF-NVPPRFRDTAYFDKGENVVVKIPFTGYP--KPKITWYRDNEVIESGGHFHVETSERHAILTIRDASN  453 (591)
Q Consensus       377 ~~~l~v~~~p~~-~~~~~~~~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  453 (591)
                      +. +.+...+.. ..++.  .......+..+.|.+.....+  .-.|.|...+...................+.+.+|.+
T Consensus       389 s~-~~~~~~~~~~~~p~~--~l~~~~~~~si~l~W~~p~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p  465 (589)
T 3l5h_A          389 AV-LTIPACDFQATHPVM--DLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAE  465 (589)
T ss_dssp             CC-CCCCCTTCCCCSCCC--SCEEEECSSSEEEECCCCSSCCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSCCCS
T ss_pred             eE-EEeecccccCCCCcc--eEEEEECCCeEEEEEECCCCCccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhcccc
Confidence            42 122111111 11111  111122356677776553221  2246665543221100111111223455677799999


Q ss_pred             CcceeEEEEEEcCCCccceEE-EE-EecCCCCCCCCCeeeeecCCeeEEEeecc-ccCCCcceeeEEEEeeeCCCCceEE
Q psy12425        454 VDTAPYRVVAENDLGMDSAIV-KI-QISDRPDPPQFPTVEDIGHDSLALVWRAP-IWDGGSNITNYIVEKREHPMSSWIR  530 (591)
Q Consensus       454 ~~~g~y~c~a~n~~g~~~~~~-~~-~v~~~p~~p~~~~~~~~~~~~v~l~W~~p-~~~~~~~~~~y~v~~~~~~~~~~~~  530 (591)
                      ...|.|++.|.|..|.+.... .+ +....|.+|..+.+...+.+++.|+|.+| ..++++.+.+|.|+|+...+..|..
T Consensus       466 ~t~Y~~~V~A~~~~g~g~~~~~~~~t~~~~P~~pp~l~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~~~~~  545 (589)
T 3l5h_A          466 SKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAV  545 (589)
T ss_dssp             SSEEEEEECBEETTEECCCEEEEEESSCCCCSSCCCCCEECCCSSCBEEBCCCCCHHHHCSCEEEEEECCBCSSCCCCCE
T ss_pred             CcEEEEEEEEEeCCcccCCEEEEEEeccCCCCCCCeEEEeecccceEEEEecCCCHHHcCccceeEEEEEEeCCCCeEEE
Confidence            999999999999988775432 22 22245666667888888999999999974 3344568999999999877766655


Q ss_pred             eceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcce
Q psy12425        531 VGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDL  571 (591)
Q Consensus       531 ~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~  571 (591)
                      ..+...+.++|.+|.|++.|.|+|+|.|.+| |..|....+
T Consensus       546 ~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-~~~S~~~~~  585 (589)
T 3l5h_A          546 NVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFTF  585 (589)
T ss_dssp             EECTTCCBCCBCSCCSSCCEECCEEEEETTE-EEECCCCEE
T ss_pred             EeCCcccEEEecCCCCCCEEEEEEEEEeCCC-CCCCCCeEE
Confidence            5566778999999999999999999999999 888876554

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=7.7e-38  Score=298.04  Aligned_cols=369  Identities=17%  Similarity=0.256  Sum_probs=253.6

Q ss_pred             CceeeeecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-E
Q psy12425          2 PNALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS-G   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-~   79 (591)
                      |.++.+.+|+++.|.|.+.+ .|.+.+.|+|+|..+....+ ++.......+|.|.+++.+|+|.|+|.|.|..|... .
T Consensus        13 p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~   91 (395)
T 1bih_A           13 PAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-NAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR   91 (395)
T ss_dssp             CSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT-TEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccc-eEEEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeE
Confidence            67889999999999999998 89999999999998877653 233333445899999999999999999999988764 3


Q ss_pred             EEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEE
Q psy12425         80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY  159 (591)
Q Consensus        80 ~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  159 (591)
                      .+.|.|...+.++..+.......+..+.|.|..+.   +.+.                                      
T Consensus        92 ~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~---~~p~--------------------------------------  130 (395)
T 1bih_A           92 VISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPN---AYPK--------------------------------------  130 (395)
T ss_dssp             CEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCE---EESC--------------------------------------
T ss_pred             EEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCC---CCCC--------------------------------------
Confidence            35555544333222221222223444555554211   0000                                      


Q ss_pred             EEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEE
Q psy12425        160 LFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV  239 (591)
Q Consensus       160 ~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~  239 (591)
                                                                    ..+.|....... .+..      .........  
T Consensus       131 ----------------------------------------------~~v~W~~~~~~~-~~~~------~~~~~~~~~--  155 (395)
T 1bih_A          131 ----------------------------------------------PLITWKKRLSGA-DPNA------DVTDFDRRI--  155 (395)
T ss_dssp             ----------------------------------------------CEEEEEEEETTS-CGGG------CCCCCCTTE--
T ss_pred             ----------------------------------------------CeEEEEecCCCc-Cccc------ccccccccE--
Confidence                                                          123343311000 0000      000000000  


Q ss_pred             EeeecCCceeeecCcccCCcE---EEEEEEEcCCCCCCCCCCcceEEEcCC-----CccCCCeEEeeccccceeccccEE
Q psy12425        240 NVAICAPSQINIPNLIEGRQY---EFRVYAQNEAGLSLPSSASNSVQIKDP-----MAAKAPEIIVPLRNANAIQNHNAQ  311 (591)
Q Consensus       240 ~~~~~~~~~~~i~~l~~~~~~---~y~c~a~n~~g~~~~s~~~~~~~~~~~-----~~~~~p~~~~~~~~~~~~~g~~~~  311 (591)
                        .......|.|.++...|.|   .|+|.|.|..|..........+.....     ....+|.+  .+....+.+|+.+.
T Consensus       156 --~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~  231 (395)
T 1bih_A          156 --TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTM  231 (395)
T ss_dssp             --EECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEE
T ss_pred             --EEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEE
Confidence              0113346888899999999   999999998876432111111111100     00113333  24566788999999


Q ss_pred             EEEEEcCCCCCeeEEecCCccCCCCCceEEEE--eCCeEEEEEcceecccceEEEEEEEeCCcceee-eeEEEEecCCcc
Q psy12425        312 FQCTITGCPKPTISWLKGSREITPSARHHIFA--EGDTYTLIINSVYGVDADEYVCRAVNKGGVKST-KAELIIMTAPKF  388 (591)
Q Consensus       312 l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~-~~~l~v~~~p~~  388 (591)
                      |.|.+.|.|.+.+.|++++..+.......+..  ......|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|.+
T Consensus       232 l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~  311 (395)
T 1bih_A          232 IYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKY  311 (395)
T ss_dssp             EEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEE
T ss_pred             EEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCcc
Confidence            99999999999999999998876554333321  222337999999999999999999999998755 889999999887


Q ss_pred             cCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        389 NVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       389 ~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      ...+.  ....+..|+.+.|.|.+.|.|.|.+.|+++|..+..+ ++.+.  +  ..|.|.++...|+|.|+|.|.|..|
T Consensus       312 ~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~--~--~~L~i~~~~~~d~G~Y~C~a~N~~G  384 (395)
T 1bih_A          312 EQKPE--KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--D--SGLVIKGVKNGDKGYYGCRATNEHG  384 (395)
T ss_dssp             EECCC--SEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--T--TEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             ccCCC--cceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE--C--CEEEEeeCCcccCEEEEEEEEccCC
Confidence            76553  2356789999999999999999999999999988654 44433  2  3899999999999999999999999


Q ss_pred             ccceEEEEEe
Q psy12425        469 MDSAIVKIQI  478 (591)
Q Consensus       469 ~~~~~~~~~v  478 (591)
                      .....+.|.|
T Consensus       385 ~~~~~~~l~V  394 (395)
T 1bih_A          385 DKYFETLVQV  394 (395)
T ss_dssp             EEEEEEEEEE
T ss_pred             CceEEEEEEE
Confidence            9988888876

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.8e-37  Score=293.79  Aligned_cols=361  Identities=19%  Similarity=0.238  Sum_probs=255.8

Q ss_pred             Cceeee---ecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCC-CCceEEEEEEEcCCeee
Q psy12425          2 PNALYI---PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK-EDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         2 p~~~~v---~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~c~~~n~~g~~   77 (591)
                      |.+..+   .+|+++.|.|.+.|.|.+.+.|+|+|..+......++...+.  .|.|.++.. +|+|.|+|.|.|..|..
T Consensus        11 p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~--~L~i~~~~~~~D~G~Y~C~a~n~~g~~   88 (382)
T 1cs6_A           11 PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCVATNARGTV   88 (382)
T ss_dssp             CCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT--EEEEESCCHHHHCEEEEEEEEETTEEE
T ss_pred             CCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCC--eEEEecccccccCEEEEEEEEcCCcEE
Confidence            555555   799999999999999999999999999987664444444443  799999997 99999999999998876


Q ss_pred             EE-EEEEEEecCCCCCCC-CcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcC
Q psy12425         78 SG-TFTINITGLPGPPIG-PLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTE  155 (591)
Q Consensus        78 ~~-~~~l~v~~~p~~p~~-~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  155 (591)
                      .. .+.|.|...|..+.. +.......+..+.|.|..+.   +.+                                   
T Consensus        89 ~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~---~~p-----------------------------------  130 (382)
T 1cs6_A           89 VSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPP---HYP-----------------------------------  130 (382)
T ss_dssp             ECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCS---EES-----------------------------------
T ss_pred             EecceEEEeeccccccccCCCceEEecCCcEEEEeCCCC---CCC-----------------------------------
Confidence            33 466666654443322 11223334445555554211   000                                   


Q ss_pred             CcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc
Q psy12425        156 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA  235 (591)
Q Consensus       156 ~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~  235 (591)
                                                                       ...+.|........  +         .....
T Consensus       131 -------------------------------------------------~~~i~W~~~~~~~~--~---------~~~~~  150 (382)
T 1cs6_A          131 -------------------------------------------------ALSYRWLLNEFPNF--I---------PADGR  150 (382)
T ss_dssp             -------------------------------------------------CCEEEEEESSTTCB--C---------CCCSS
T ss_pred             -------------------------------------------------CcEEEEEECCCccc--c---------ccCce
Confidence                                                             02234443211000  0         00000


Q ss_pred             cEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC--CCcceEEEcCC-CccCCCeEEe-eccccceeccccEE
Q psy12425        236 WQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS--SASNSVQIKDP-MAAKAPEIIV-PLRNANAIQNHNAQ  311 (591)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s--~~~~~~~~~~~-~~~~~p~~~~-~~~~~~~~~g~~~~  311 (591)
                        ..  .......|.|.++...|.|.|+|.+.|..|.....  .....+.+... ....+|.+.. .+....+.+|+.+.
T Consensus       151 --~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~  226 (382)
T 1cs6_A          151 --RF--VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVT  226 (382)
T ss_dssp             --EE--ECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEE
T ss_pred             --EE--EecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEE
Confidence              00  01123578999999999999999999877532211  11223332211 1122455543 34566788999999


Q ss_pred             EEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCC
Q psy12425        312 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP  391 (591)
Q Consensus       312 l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~  391 (591)
                      |.|.+.+.|.+.+.|++++..+....      ......|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+...
T Consensus       227 l~C~~~g~p~~~i~W~~~~~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~  300 (382)
T 1cs6_A          227 LECFAFGNPVPQIKWRKLDGSQTSKW------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV  300 (382)
T ss_dssp             EECEEEEESCCEEEEEECCSCCSCCC------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC
T ss_pred             EEEEEccCCCCEEEEEECCcccccEE------ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccC
Confidence            99999999999999999877654311      112337999999999999999999999999888899999988887654


Q ss_pred             CCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccc
Q psy12425        392 PRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS  471 (591)
Q Consensus       392 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~  471 (591)
                      +   ....+..|+.+.|.|.+.|.|.|.+.|+++|..+....++.+.    ...|.|.++..+|+|.|+|.|.|..|...
T Consensus       301 ~---~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  373 (382)
T 1cs6_A          301 I---TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHGTVY  373 (382)
T ss_dssp             C---CCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             C---CccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE----CCEEEECcCCcccCEEEEEEEEeCCCeEE
Confidence            4   2356788999999999999999999999999998876666553    34899999999999999999999999999


Q ss_pred             eEEEEEec
Q psy12425        472 AIVKIQIS  479 (591)
Q Consensus       472 ~~~~~~v~  479 (591)
                      ..+.|.|.
T Consensus       374 ~~~~l~V~  381 (382)
T 1cs6_A          374 ASAELTVQ  381 (382)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            88888875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=294.62  Aligned_cols=361  Identities=12%  Similarity=0.129  Sum_probs=228.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.+++|.+|+++.|.|.+.|.|.+.|.|++++..+........ ......+|.|.+++++|+|.|+|.|.|..|.....+
T Consensus        55 ~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~  133 (423)
T 3qs7_E           55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF  133 (423)
T ss_dssp             -CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred             cccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceecc-ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEE
Confidence            4478999999999999999999999999999988765332211 111234799999999999999999999999888888


Q ss_pred             EEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEE
Q psy12425         82 TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLF  161 (591)
Q Consensus        82 ~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~  161 (591)
                      .|.|...|...     ...                   +.  + +                       .    .+..-.+
T Consensus       134 ~l~V~~~p~~~-----~~~-------------------p~--~-~-----------------------~----~~~~~~L  159 (423)
T 3qs7_E          134 TVSIRNTLLYT-----LRR-------------------PY--F-R-----------------------K----MENQDAL  159 (423)
T ss_dssp             EEEEC-----C-----EEE-------------------EE--E-E-----------------------E----CSSSSCE
T ss_pred             EEEEecCcccc-----ccC-------------------Cc--E-e-----------------------c----cCCceEE
Confidence            88887432110     000                   00  0 0                       0    0111134


Q ss_pred             EEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEe
Q psy12425        162 HVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV  241 (591)
Q Consensus       162 ~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~  241 (591)
                      .|.|..                                   .....++|.....    ....+...    ..   ...  
T Consensus       160 ~C~a~G-----------------------------------~P~P~i~W~k~~~----~~~~~~~~----~~---~~~--  191 (423)
T 3qs7_E          160 VCISES-----------------------------------VPEPIVEWVLCDS----QGESCKEE----SP---AVV--  191 (423)
T ss_dssp             EEEEEE-----------------------------------SSCCEEEEEEC------------------------CE--
T ss_pred             EEEEee-----------------------------------ecCCeEEEEECCC----CCcccccc----cc---ccc--
Confidence            565531                                   1113477876311    11100000    00   000  


Q ss_pred             eecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcC-CC
Q psy12425        242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITG-CP  320 (591)
Q Consensus       242 ~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~p  320 (591)
                       .....     -+...|.|.|+|.|.|..|....  ....+.+..     +|.+  .+.+..+.+|+.+.|.|.+.| .|
T Consensus       192 -~~~~~-----~l~~~d~G~Y~C~A~N~~G~~~~--~~~~l~V~~-----~p~~--~~~~~~v~~G~~v~L~C~~~g~~p  256 (423)
T 3qs7_E          192 -KKEEK-----VLHELFGTDIRCCARNELGRECT--RLFTIDLNQ-----TPQT--TLPQLFLKVGEPLWIRCKAVHVNH  256 (423)
T ss_dssp             -EECCS-----EECCCCSSCEEEEEECSSCEEEE--ECEEEESSS-----CCCS--STTEEEEETTSCEEEEEEEEESSS
T ss_pred             -cccce-----EEecccCeEEEEEEEcCCCCcce--eeEEEEEec-----CCcc--CCCceEEeCCCeEEEEEEEEcCCC
Confidence             00011     11567899999999999886432  223444432     2222  223566889999999999998 67


Q ss_pred             CCeeEEecCCccCCCCCceEEE-EeC-----CeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCc
Q psy12425        321 KPTISWLKGSREITPSARHHIF-AEG-----DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF  394 (591)
Q Consensus       321 ~~~v~W~~~~~~~~~~~~~~~~-~~~-----~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~  394 (591)
                      .+.+.|++++..+.....+... ..+     ...+|.|.++..+|+|.|+|.|.|.   ....+.|.|..+|.+...+..
T Consensus       257 ~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~  333 (423)
T 3qs7_E          257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSS  333 (423)
T ss_dssp             CCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---
T ss_pred             CcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCC
Confidence            7999999999877554322111 111     1237999999999999999999997   677788999988877654432


Q ss_pred             ccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425        395 RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       395 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  474 (591)
                       ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.......    .....+.+.....+|+|.|+|.|.|..|..+.++
T Consensus       334 -~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~  408 (423)
T 3qs7_E          334 -EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMF  408 (423)
T ss_dssp             -CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEE
T ss_pred             -ccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccc----cCCcEEEEEecccccCEEEEEEEEcCCceEEEEE
Confidence             24567889999999999999999999999999886542100    0111222345667899999999999999999999


Q ss_pred             EEEecCCCCCCCCC
Q psy12425        475 KIQISDRPDPPQFP  488 (591)
Q Consensus       475 ~~~v~~~p~~p~~~  488 (591)
                      .|.+.++|.+|...
T Consensus       409 ~L~v~~~p~~~~~~  422 (423)
T 3qs7_E          409 TLNIRSGTKHHHHH  422 (423)
T ss_dssp             EEC-----------
T ss_pred             EEEEecCCcccccC
Confidence            99999999888753

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=1.4e-36  Score=288.53  Aligned_cols=359  Identities=18%  Similarity=0.258  Sum_probs=250.6

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEE-CCEEeecCCceeEEEeCCeEEEEEcccCCCC------ceEEEEEEEcCCe
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTK-NGRVVQSDDRFKFTVLDDYIIIFIKEIRKED------AGDYTVNLSNSSG   75 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~g~Y~c~~~n~~g   75 (591)
                      ..+.+.+|+.+.|.|.+.|.|.+.|+|+| ||..+....+.+....+  .+|.|.+++.+|      +|.|+|.|.|..|
T Consensus        12 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~--~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g   89 (388)
T 2v5m_A           12 NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD--GKLVFPPFRAEDYRQEVHAQVYACLARNQFG   89 (388)
T ss_dssp             SEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECST--TEEEECCCCGGGCCHHHHEEEEEEEEEETTE
T ss_pred             ceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCC--ceEEecccChhhccccccCceEEEEEEccCC
Confidence            35778999999999999999999999999 88888765444433333  379999999997      9999999999998


Q ss_pred             ee-EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCc
Q psy12425         76 SV-SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLT  154 (591)
Q Consensus        76 ~~-~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  154 (591)
                      .. +..+.|.+...|.....+.......+..+.|.|........                                    
T Consensus        90 ~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~------------------------------------  133 (388)
T 2v5m_A           90 SIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD------------------------------------  133 (388)
T ss_dssp             EEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTT------------------------------------
T ss_pred             eEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCC------------------------------------
Confidence            75 45577777766654443333344455556666653221100                                    


Q ss_pred             CCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCC
Q psy12425        155 EGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD  234 (591)
Q Consensus       155 ~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~  234 (591)
                                                                       ....+.|....    ..+..    .......
T Consensus       134 -------------------------------------------------~~~~v~W~~~~----~~~~~----~~~~~~~  156 (388)
T 2v5m_A          134 -------------------------------------------------FVEVVSWHTDE----EENYF----PGAEYDG  156 (388)
T ss_dssp             -------------------------------------------------TEEEEEEEETT----CCEEC----SSSCBTT
T ss_pred             -------------------------------------------------CcceEEEEeCC----Ccccc----cccCCCC
Confidence                                                             01234444311    00000    0000000


Q ss_pred             ccEEEEeeecCCceeeecCcccCCc-EEEEEEEEcCCCCCC-CCCCcceEEEcCCCccCCCeEEe-eccccceeccccEE
Q psy12425        235 AWQRVNVAICAPSQINIPNLIEGRQ-YEFRVYAQNEAGLSL-PSSASNSVQIKDPMAAKAPEIIV-PLRNANAIQNHNAQ  311 (591)
Q Consensus       235 ~~~~~~~~~~~~~~~~i~~l~~~~~-~~y~c~a~n~~g~~~-~s~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~  311 (591)
                      . .    .......|.|.++...|. |.|+|.|.|..+... .+.....+.+..+....+|.+.. ......+.+|+.+.
T Consensus       157 ~-~----~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~  231 (388)
T 2v5m_A          157 K-Y----LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTIS  231 (388)
T ss_dssp             T-E----EECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEE
T ss_pred             c-E----EEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEE
Confidence            0 0    011345789999999999 999999999754322 22222344444322111222111 11234578899999


Q ss_pred             EEEEEcCCCCCeeEEecCCccCC------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecC
Q psy12425        312 FQCTITGCPKPTISWLKGSREIT------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA  385 (591)
Q Consensus       312 l~c~~~~~p~~~v~W~~~~~~~~------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~  385 (591)
                      |.|.+.|.|.+.+.|++++..+.      ...++.. ..+   +|.|.++..+|+|.|+|.|.|..|.......|.|..+
T Consensus       232 l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~---~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  307 (388)
T 2v5m_A          232 LLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ-VSG---TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP  307 (388)
T ss_dssp             ECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE-ETT---EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEE
T ss_pred             EEEECCCCCCCEEEEEecCCCCcccccccccCceec-ccC---EEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCC
Confidence            99999999999999999754432      1222221 222   7999999999999999999999999888899999988


Q ss_pred             CcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEc
Q psy12425        386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN  465 (591)
Q Consensus       386 p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n  465 (591)
                      |.+...+   ....+..|+.+.|.|.+.|.|.|.+.|+++|..+..          ....|.|.++..+|.|.|+|.|.|
T Consensus       308 p~~~~~~---~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~----------~~~~L~i~~v~~~d~G~Y~C~a~N  374 (388)
T 2v5m_A          308 LSAKIDP---PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH----------SESVLRIESVKKEDKGMYQCFVRN  374 (388)
T ss_dssp             EEEEEES---SEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSC----------CSSEEEESSCCGGGCEEEEEEEEC
T ss_pred             CccccCC---CcEEecCCCCEEEEEEeccccCCeEEEEECCEECcc----------CCCEEEEecCChhhCEEEEEEEEc
Confidence            8765444   245678999999999999999999999999987743          346899999999999999999999


Q ss_pred             CCCccceEEEEEe
Q psy12425        466 DLGMDSAIVKIQI  478 (591)
Q Consensus       466 ~~g~~~~~~~~~v  478 (591)
                      ..|....++.|.|
T Consensus       375 ~~G~~~~~~~l~V  387 (388)
T 2v5m_A          375 DRESAEASAELKL  387 (388)
T ss_dssp             SSCEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEe
Confidence            9999988888876

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=8e-40  Score=339.90  Aligned_cols=460  Identities=16%  Similarity=0.185  Sum_probs=65.0

Q ss_pred             eeeeecCCeEEEEEEecc--CCCceEEEEECCEEeecCCceeEE--------EeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          4 ALYIPEGDNTKVKIFYAG--DQPMEVSLTKNGRVVQSDDRFKFT--------VLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      .+.+.+|+++.|.|.+.+  .+.+.+.|++++..+.........        .......|.|.+++.+|+|.|+|.+.|.
T Consensus       233 ~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  312 (772)
T 3v2a_R          233 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG  312 (772)
T ss_dssp             CEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECS
T ss_pred             ceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcC
Confidence            478999999999999987  556789999999876554322111        1123468999999999999999999999


Q ss_pred             CeeeEEEEEEEEecCCCCCCCC---cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEE
Q psy12425         74 SGSVSGTFTINITGLPGPPIGP---LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIV  150 (591)
Q Consensus        74 ~g~~~~~~~l~v~~~p~~p~~~---~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i  150 (591)
                      .|..+..+.|.|...|.....+   .......+..+.|.|...... ...+.+|. .......    . ........+.|
T Consensus       313 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p-~~~v~W~~-~g~~l~~----~-~~~~~~~~L~i  385 (772)
T 3v2a_R          313 LMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYP-PPEIKWYK-NGIPLES----N-HTIKAGHVLTI  385 (772)
T ss_dssp             SCEEEEEEEEEEECCCC---------------------------------------------------------------
T ss_pred             CcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeC-CCeEEEEE-CCEeCCC----C-ceEccceeEEE
Confidence            9988888999999877543321   123344567788888643211 11222221 0000000    0 00113467888


Q ss_pred             cCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCC-CCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEe-
Q psy12425        151 QGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP-PGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDK-  228 (591)
Q Consensus       151 ~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~-  228 (591)
                      ..+...+.+.|+|.|.|..|....+........ .+...... ...+......+..++|.|.....+....+.+|+-.. 
T Consensus       386 ~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~-~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~  464 (772)
T 3v2a_R          386 MEVSERDTGNYTVILTNPISKEKQSHVVSLVVY-VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEE  464 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCChhcCceEEEEEEECCcCeEEEEEEEEEEe-cCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCc
Confidence            999999999999999998876543322221111 11111000 000111244577788888864322211133332100 


Q ss_pred             -------------eecCCCccEEE-------------------EeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC
Q psy12425        229 -------------HEVGSDAWQRV-------------------NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS  276 (591)
Q Consensus       229 -------------~~~~~~~~~~~-------------------~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s  276 (591)
                                   .......|...                   .........|.|.++  .|.|.|+|.|.|..|...  
T Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~--  540 (772)
T 3v2a_R          465 ECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGE--  540 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccc--
Confidence                         00000011100                   000011245666665  688999999999988653  


Q ss_pred             CCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEE---------------
Q psy12425        277 SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI---------------  341 (591)
Q Consensus       277 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~---------------  341 (591)
                       ....+.+.     .+|.+...+. ..+.+|+.+.|.|.+.+.|.+.+.|++++..+........               
T Consensus       541 -~~~~l~V~-----~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~  613 (772)
T 3v2a_R          541 -RVISFHVT-----RGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLN  613 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -eeEEEEEE-----CCceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeecc
Confidence             23344443     2455544433 3477899999999999999999999998766543221111               


Q ss_pred             -----EEeCCeEEEEEcceecccceEEEEEEEeCCccee--eeeEEEE--ecCCcccCCCCcccceeecCCCeEEEEEee
Q psy12425        342 -----FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS--TKAELII--MTAPKFNVPPRFRDTAYFDKGENVVVKIPF  412 (591)
Q Consensus       342 -----~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~--~~~~l~v--~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~  412 (591)
                           ...+...+|.|.++..+|+|.|+|.|.|..|...  ....+.|  ..+|.+...+   ....+..|+.+.|.|.+
T Consensus       614 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~---~~~~v~~g~~~~l~C~~  690 (772)
T 3v2a_R          614 ATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNL---ENQTTSIGESIEVSCTA  690 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCC---CceEEeCCCCEEEEEEe
Confidence                 1111234699999999999999999999665442  2334444  5667665443   23557889999999999


Q ss_pred             eccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCC
Q psy12425        413 TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF  487 (591)
Q Consensus       413 ~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~  487 (591)
                      .|.|.|.+.|+++|..+....++.+.  .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|.++|+....
T Consensus       691 ~g~P~p~v~W~k~g~~l~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~~  763 (772)
T 3v2a_R          691 SGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL  763 (772)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             CccCCCeEEEEECCeECcCCCCeEEc--CCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCcccc
Confidence            99999999999999988766554433  34678999999999999999999999999999999999998876543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=3.6e-36  Score=296.94  Aligned_cols=452  Identities=12%  Similarity=0.119  Sum_probs=265.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECC--EEee------------cCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--RVVQ------------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|+++.|.|.+.+.|.+.+.|+|++  ..+.            ...|+.....+...+|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (523)
T 2rcj_C            7 PPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYY   86 (523)
T ss_pred             CCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEE
Confidence            77899999999999999999999999999974  2111            124555444455679999999999999999


Q ss_pred             EEEEcCCeee---EEEEEEEEecCCC-CCC---CCcceEEecCceEEEEecCCCCCCC-cceeeEEEEEEecCCCceEE-
Q psy12425         68 VNLSNSSGSV---SGTFTINITGLPG-PPI---GPLDVSEITKHTCTLHWNPPKYDGG-LKVTHYVVERRDISMPHWIC-  138 (591)
Q Consensus        68 c~~~n~~g~~---~~~~~l~v~~~p~-~p~---~~~~~~~~~~~~~~l~w~~p~~~~~-~~~~~y~~~~~~~~~~~~~~-  138 (591)
                      |.|.|..|..   ...+.|.|...+. +|.   .+.......+..+.|.|........ ..+.||.- ........... 
T Consensus        87 C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~  165 (523)
T 2rcj_C           87 CASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKAD-GSPVKAGVETTK  165 (523)
T ss_pred             EEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecC-CCCCCCceEecc
Confidence            9999987642   3446777754322 221   2222233456688999975431111 12332220 00010000000 


Q ss_pred             EEeec-----CcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCC-CCCCeEEeecCCeEEEEEec
Q psy12425        139 ISTTC-----HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP-PGIPVVTQVGGDFVNLSWDK  212 (591)
Q Consensus       139 ~~~~~-----~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~v~l~w~~  212 (591)
                      .....     ....+.|..+...+.+.|+|.|.|..|.........  ........|.. +..+......|..++|.|..
T Consensus       166 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~--~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~  243 (523)
T 2rcj_C          166 PSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT--ECSASTKGPSVFPLAPSSKSTSGGTAALGCLV  243 (523)
T ss_pred             ccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeee--ecCCCCcCCEEEecCCCcccccCCceEEEEEE
Confidence            00000     113588899999999999999999877533221100  00000011100 01111223567889999987


Q ss_pred             CCCCCCc-ceEEEEEEeeecCCCccEEEEee---ecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCC
Q psy12425        213 PLDDGGS-RIQGYWIDKHEVGSDAWQRVNVA---ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPM  288 (591)
Q Consensus       213 ~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~  288 (591)
                      ....... .+.+| .................   ......|.|.++...| |.|+|.|.|..|...   ....+.+.   
T Consensus       244 ~g~~P~p~~v~W~-k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~---~~~~l~v~---  315 (523)
T 2rcj_C          244 KDYFPQPVTVSWN-SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK---VDKRVEPL---  315 (523)
T ss_pred             eceeCCCeEEEEe-cCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcc---eEEecCCC---
Confidence            4321111 12222 11111000000001000   0012478999999999 999999999988642   22222222   


Q ss_pred             ccCCCeE-Eeeccccc-eeccccEEEEEEEcCCCC----CeeEEecCCccCCCCCceEEE-EeCCe----EEEEEcceec
Q psy12425        289 AAKAPEI-IVPLRNAN-AIQNHNAQFQCTITGCPK----PTISWLKGSREITPSARHHIF-AEGDT----YTLIINSVYG  357 (591)
Q Consensus       289 ~~~~p~~-~~~~~~~~-~~~g~~~~l~c~~~~~p~----~~v~W~~~~~~~~~~~~~~~~-~~~~~----~~l~i~~~~~  357 (591)
                        ..|.+ ...+.... +.+|+.+.|.|.+.|.|+    +.|.|++++..+......... ..++.    ..|.|.++..
T Consensus       316 --~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~  393 (523)
T 2rcj_C          316 --SLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNW  393 (523)
T ss_pred             --cCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHh
Confidence              22443 33333333 788999999999998653    599999999887655432211 11221    2588999999


Q ss_pred             ccceEEEEEEEeCCcceeeeeEEE----EecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC--eEEEeeCCeEeee
Q psy12425        358 VDADEYVCRAVNKGGVKSTKAELI----IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP--KITWYRDNEVIES  431 (591)
Q Consensus       358 ~d~g~y~c~a~n~~g~~~~~~~l~----v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~--~v~W~~~~~~~~~  431 (591)
                      +|.|.|+|.|.|..+.......+.    +..+|.+...+..  ...+. +..+.|.|.+.|.|++  .+.|+++|..+..
T Consensus       394 ~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~--~~~~~-~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~  470 (523)
T 2rcj_C          394 LDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS--REEMT-KNQVSLTCLVKGFYPSDIAVEWESNGQPENN  470 (523)
T ss_pred             cCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCEEEEeCCC--hHHcc-CCceEEEEEEEeeECCCCEEEEEECCEECCC
Confidence            999999999999877765554554    3445554432211  11223 4449999999998766  9999999998864


Q ss_pred             ccceEEEecCC-----eeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        432 GGHFHVETSER-----HAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       432 ~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      ..........+     ...|.+......|.|.|+|.|.|....
T Consensus       471 ~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~~l~  513 (523)
T 2rcj_C          471 YKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  513 (523)
T ss_pred             eeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcCCcC
Confidence            33222221211     233455555557799999999998543

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=6.1e-37  Score=296.69  Aligned_cols=424  Identities=12%  Similarity=0.080  Sum_probs=265.7

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceE-----EEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEV-----SLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v-----~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      |..+.|.+|++++|.|.+.| |.+.+     .|+|++..+...         ....|.|.+++. |+| |+|.|.+..+.
T Consensus         6 P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~---------~~~~l~i~~v~~-d~g-Y~C~a~~~~~~   73 (450)
T 1z7z_I            6 PSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGN---------NRKVYELSNVQE-DSQ-PMCYSNCPDGQ   73 (450)
T ss_dssp             SSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTT---------TEEEEEEEEECS-CBC-CEEEEEETTEE
T ss_pred             CCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecCC---------CceEEEEEeccc-CCe-eEEEEeCCCCc
Confidence            78899999999999999998 88888     999987755322         223889999988 999 99999887777


Q ss_pred             eEEEEEEEEecCCCCCC-CCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe--ecCcceEEEcCC
Q psy12425         77 VSGTFTINITGLPGPPI-GPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST--TCHDTTFIVQGL  153 (591)
Q Consensus        77 ~~~~~~l~v~~~p~~p~-~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~i~~l  153 (591)
                      .+..+.|.|...|.... .+.......+..+.|.|....   ..+...+.+.|...+. .......  ......+.|..+
T Consensus        74 ~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g---~~~~~~~~v~W~k~g~-~l~~~~~~~~~~~~~L~i~~~  149 (450)
T 1z7z_I           74 STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG---GAPRANLTVVLLRGEK-ELKREPAVGEPAEVTTTVLVR  149 (450)
T ss_dssp             EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEEC---CBCGGGEEEEEEETTE-EEEEEECCTTTEEEEEEEECC
T ss_pred             ceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecC---CCCCcCcEEEEeeCCE-EeecccccccccceEEEEEee
Confidence            78888999988765442 222345567889999997543   1111112222222111 0000000  112347899999


Q ss_pred             cCCcEEEEEEEEEccCCCCCCCC---ccCcccccCCCCCCCCCCC-CeEEeecCCeEEEEEecCCCCCCcceEEEEEE-e
Q psy12425        154 TEGQEYLFHVMAVNENGMGPPLE---GINPIKAKSPYDKPSPPGI-PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID-K  228 (591)
Q Consensus       154 ~~~~~y~~~~~a~n~~g~~~~~~---~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~-~  228 (591)
                      ..++.+.|+|.|.|..|......   ............++.+|.. .......|..++|.|.............+|.. .
T Consensus       150 ~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~  229 (450)
T 1z7z_I          150 RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGD  229 (450)
T ss_dssp             SSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETT
T ss_pred             ccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCC
Confidence            99999999999999877432100   0001110000001111211 01345678899999997543111112222211 1


Q ss_pred             eecCCCccEEEEeeecCCceee-ecCcccCCcE--EEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeecccccee
Q psy12425        229 HEVGSDAWQRVNVAICAPSQIN-IPNLIEGRQY--EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI  305 (591)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~~~~--~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  305 (591)
                      .....    ..... .....+. ..++...|.|  .|+|.|.|..|...   ....+.+...   .+|.+..  ....+.
T Consensus       230 ~~~~~----~~~~~-~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~---~~~~l~V~~~---~~p~i~~--~~~~v~  296 (450)
T 1z7z_I          230 QRLNP----TVTYG-NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE---TLQTVTIYSF---PAPNVIL--TKPEVS  296 (450)
T ss_dssp             EECCC----EEEEE-TTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEE---EEEEEEEECC---CCCEEEE--SCSEEE
T ss_pred             EeCCc----eEEec-CCceeEEEEEEeEhhhCCcEEEEEEEccCCccEE---EEEEEEEecC---CCCeEec--CCeeEe
Confidence            11111    11111 1111111 1166889988  99999999877542   2344454421   2355543  345789


Q ss_pred             ccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc-c---eeeeeEEE
Q psy12425        306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG-V---KSTKAELI  381 (591)
Q Consensus       306 ~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g-~---~~~~~~l~  381 (591)
                      +|+.+.|.|.+.  |.+.+.|  +|..+..        .+....|.|.++..+|.|.|+|.|.|..+ .   ......|.
T Consensus       297 ~G~~v~l~C~~~--p~p~i~W--~g~~~~~--------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~  364 (450)
T 1z7z_I          297 EGTEVTVKCEAH--PRAKVTL--NGVPAQP--------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR  364 (450)
T ss_dssp             TTCEEEEEEEC----------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECE
T ss_pred             CCCcEEEEEecC--CCCEeEE--CCEEcCC--------CCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEE
Confidence            999999999998  8899999  6655521        12233799999999999999999997665 3   34678888


Q ss_pred             EecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEE
Q psy12425        382 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV  461 (591)
Q Consensus       382 v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c  461 (591)
                      |..+|.+...+. .....+.+|+.+.|.|.+.|.|.|.+.|+++|..+...+          ..+   .+..+|+|.|+|
T Consensus       365 V~~~P~~~~~~~-p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g----------~~~---~v~~~d~G~Y~C  430 (450)
T 1z7z_I          365 VLYGPRLDERDC-PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG----------ESV---TVTRDLEGTYLC  430 (450)
T ss_dssp             EEEEEECCSTTS-CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT----------SCE---ECCGGGCEEEEE
T ss_pred             EecCCceeeccC-CCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCC----------CeE---eEehhhCeEEEE
Confidence            988888765432 234567889999999999999999999999987433221          112   578899999999


Q ss_pred             EEEcCCCccceEEEEEecC
Q psy12425        462 VAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       462 ~a~n~~g~~~~~~~~~v~~  480 (591)
                      .|.|..|..+..+.|.|..
T Consensus       431 ~a~N~~G~~~~~~~l~V~~  449 (450)
T 1z7z_I          431 RARSTQGEVTREVTVNVLS  449 (450)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEeCCCceeEEEEEEEEc
Confidence            9999999999999998865

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=9.2e-36  Score=304.84  Aligned_cols=472  Identities=13%  Similarity=0.112  Sum_probs=253.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEE-EE--ECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee-e
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVS-LT--KNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS-V   77 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~-W~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~-~   77 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.+. |+  +||..+.......+.......+|.|.++.+.|.|.|+|.|.|..|. .
T Consensus       171 ~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~  250 (731)
T 2v5y_A          171 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI  250 (731)
T ss_dssp             CCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEE
T ss_pred             ccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcc
Confidence            457889999999999999999999988 88  7887765442211111122468999999999999999999999998 5


Q ss_pred             EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCc
Q psy12425         78 SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ  157 (591)
Q Consensus        78 ~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~  157 (591)
                      +..+.|.|..+|.+|..| .+......++.|.|.++..+++.++..|.++++.. ...|..... .....+.+.+|.+++
T Consensus       251 s~~~~l~V~~~P~~~~~p-~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~-~~~~~~~~~-~~~~~~~i~~L~p~t  327 (731)
T 2v5y_A          251 SNYAELVVKEPPVPIAPP-QLASVGATYLWIQLNANSINGDGPIVAREVEYCTA-SGSWNDRQP-VDSTSYKIGHLDPDT  327 (731)
T ss_dssp             CCCEEEEEECCCCBSSCC-EEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEES-SSSCEEEEE-CCSSEEEECSCCTTC
T ss_pred             eeeEEEEEecCCCCCCCc-ceeccCCceEEEEeCCcccCCCCccEEEEEEEEEC-CCCceEEec-cCcceEEEeCCCCCC
Confidence            667889999999887765 45566788999999988766668899999999875 446765543 456889999999999


Q ss_pred             EEEEEEEEE--ccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCC-CcceEEEEEEeeecCCC
Q psy12425        158 EYLFHVMAV--NENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG-GSRIQGYWIDKHEVGSD  234 (591)
Q Consensus       158 ~y~~~~~a~--n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~-~~~~~~y~~~~~~~~~~  234 (591)
                      .|.|+|.|.  |..|.+..+......  .....+|.+|..+.+.....+++.|+|.++.... ...+.+|.+.++.....
T Consensus       328 ~Y~~~V~A~~~N~~G~s~~S~~~~~~--t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~  405 (731)
T 2v5y_A          328 EYEISVLLTRPGEGGTGSPGPALRTR--TKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGG  405 (731)
T ss_dssp             EEEEEEEEECSSTTCSCCBCCCEEEE--CCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSS
T ss_pred             EEEEEEEEEecCCCccccCCCcEEee--ecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCC
Confidence            999999999  999988876543222  2223345677778888889999999999875322 23567899988876544


Q ss_pred             ccEEEE----eeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeecccccee-cccc
Q psy12425        235 AWQRVN----VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI-QNHN  309 (591)
Q Consensus       235 ~~~~~~----~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~g~~  309 (591)
                      .+....    ........++|.+|.+++.|.|++.|.|..|.+. + ....+......+..+|..     .+... ....
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S-~~~~~~T~~~~P~~p~~~-----~~~~~~~~~s  478 (731)
T 2v5y_A          406 QEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-S-QELIVQTDEDLPGAVPTE-----SIQGSTFEEK  478 (731)
T ss_dssp             SEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-C-CCEEEECCCCCCCCCCTT-----TCEEEEETTE
T ss_pred             CCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-C-ceEEEEccCCCCCCCCcc-----eEEeeecCCe
Confidence            332221    1223457899999999999999999999998763 2 222222221111111100     11111 1222


Q ss_pred             EEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCccc
Q psy12425        310 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN  389 (591)
Q Consensus       310 ~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~  389 (591)
                      +            .+.|......-..-..|.+         ........+               .              
T Consensus       479 i------------~l~W~~P~~~~g~i~~Y~V---------~~~~~~~~~---------------~--------------  508 (731)
T 2v5y_A          479 I------------FLQWREPTQTYGVITLYEI---------TYKAVSSFD---------------P--------------  508 (731)
T ss_dssp             E------------EEECCCCSCCSSCCCEEEE---------EEEEEEECC------------------------------
T ss_pred             E------------EEEEcCCCCCCCCccceEE---------EEEECcCCC---------------c--------------
Confidence            3            4566432110000001111         000000000               0              


Q ss_pred             CCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        390 VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       390 ~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                                                     .|...      .....+........++|.+|.+...|.|++.|.|..|.
T Consensus       509 -------------------------------~~~~~------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  551 (731)
T 2v5y_A          509 -------------------------------EIDLS------NQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGF  551 (731)
T ss_dssp             ---------------------------------CCC------CCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEE
T ss_pred             -------------------------------ccccc------CcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCcc
Confidence                                           00000      00111222345668899999999999999999999998


Q ss_pred             cceEEEEEecCCCCCCCC---Ce--eeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCc----------------e
Q psy12425        470 DSAIVKIQISDRPDPPQF---PT--VEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS----------------W  528 (591)
Q Consensus       470 ~~~~~~~~v~~~p~~p~~---~~--~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~----------------~  528 (591)
                      +..+. +.+...+.+|..   +.  ....+.+++.|+|.+|. +++++|.+|.|.++......                |
T Consensus       552 g~~s~-~~~~T~~~~P~~p~~~~~~~~~~~~~si~l~W~pp~-~~~g~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (731)
T 2v5y_A          552 GPPAT-NQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAH-SRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHF  629 (731)
T ss_dssp             EEEEE-EEEECCCCCCCC--------------------------------------------------------------
T ss_pred             CCCcc-cEEEcCCCCCCCCCcccccccccCCceEEEEEeCCC-CCCCceEEEEEEEEecCCCCCccccccccCcccccCH
Confidence            76553 455544444433   22  23457789999999875 55668999999887543211                1


Q ss_pred             EEe---------------------------ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEe
Q psy12425        529 IRV---------------------------GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT  574 (591)
Q Consensus       529 ~~~---------------------------~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t  574 (591)
                      ...                           ++.....+....|.|++.|.|+|+|.+.+|.+..+..+.+.|.
T Consensus       630 ~~~~~~~~~~y~aa~~~p~~~~~~~~~~vg~~~~~~~~~n~~L~p~~~Y~i~v~A~s~~g~~~~~~~v~~~t~  702 (731)
T 2v5y_A          630 QNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATK  702 (731)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             HHHhhcCCcceEEEEcChhhCcccCCEEECCCCeECCEECCCCCCCCceEEEEEEEEecCCCcEeeeEEEecc
Confidence            100                           0011123344559999999999999999999988887665444

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=7.4e-34  Score=257.14  Aligned_cols=272  Identities=22%  Similarity=0.425  Sum_probs=230.7

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.+.|+|+|..+....++++...++...|.|.+++.+|+|.|+|.+.|..|..+..+
T Consensus        12 p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~   91 (284)
T 2rik_A           12 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA   91 (284)
T ss_dssp             CCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEE
Confidence            67889999999999999999999999999999999888888888878888999999999999999999998877655555


Q ss_pred             EEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEE
Q psy12425         82 TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLF  161 (591)
Q Consensus        82 ~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~  161 (591)
                      .|.|..+|..                                                                      
T Consensus        92 ~l~V~~~p~~----------------------------------------------------------------------  101 (284)
T 2rik_A           92 QLGVQEPPRF----------------------------------------------------------------------  101 (284)
T ss_dssp             EEEEECCCEE----------------------------------------------------------------------
T ss_pred             EEEccCCCcc----------------------------------------------------------------------
Confidence            5444321100                                                                      


Q ss_pred             EEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEe
Q psy12425        162 HVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV  241 (591)
Q Consensus       162 ~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~  241 (591)
                                                                    +  ..                             
T Consensus       102 ----------------------------------------------~--~~-----------------------------  104 (284)
T 2rik_A          102 ----------------------------------------------I--KK-----------------------------  104 (284)
T ss_dssp             ----------------------------------------------E--EC-----------------------------
T ss_pred             ----------------------------------------------c--cc-----------------------------
Confidence                                                          0  00                             


Q ss_pred             eecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCC
Q psy12425        242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK  321 (591)
Q Consensus       242 ~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~  321 (591)
                                                                       ..       ....+.+|+.+.|.|.+.+.|.
T Consensus       105 -------------------------------------------------~~-------~~~~v~~g~~~~l~C~~~g~p~  128 (284)
T 2rik_A          105 -------------------------------------------------LE-------PSRIVKQDEHTRYECKIGGSPE  128 (284)
T ss_dssp             -------------------------------------------------CC-------SEEEEETTCCEEEEEEEESSSC
T ss_pred             -------------------------------------------------CC-------CceEecCCceEEEEEEEeeeCC
Confidence                                                             00       0011345677889999999999


Q ss_pred             CeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeec
Q psy12425        322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD  401 (591)
Q Consensus       322 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~  401 (591)
                      +.+.|++++..+....++.+...+....|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+...+.   ...+.
T Consensus       129 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~---~~~~~  205 (284)
T 2rik_A          129 IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPH---PVETL  205 (284)
T ss_dssp             CEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCC---CEEEC
T ss_pred             CEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCC---cceec
Confidence            999999999999888887777777788999999999999999999999999998999999999988776553   35578


Q ss_pred             CCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEec
Q psy12425        402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS  479 (591)
Q Consensus       402 ~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~  479 (591)
                      .|+.+.|.|.+.|.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|..+..+.|.|+
T Consensus       206 ~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             TTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            899999999999999999999999999988888888877778899999999999999999999999999988888875

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=1.9e-37  Score=322.12  Aligned_cols=539  Identities=14%  Similarity=0.090  Sum_probs=102.0

Q ss_pred             CceeeeecC--CeEEEEEEeccCCCceEEEEEC--CEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425          2 PNALYIPEG--DNTKVKIFYAGDQPMEVSLTKN--GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         2 p~~~~v~~G--~~~~l~C~~~~~p~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      |..+.+.+|  ++++|.|.+.+ |.+.+.|+|+  +..+....+....  +....|.|.+++.+|.|.|+|.+.+..+..
T Consensus       133 ~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  209 (772)
T 3v2a_R          133 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW--DSKKGFTIPSYMISYAGMVFCEAKINDESY  209 (772)
T ss_dssp             EEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCEE--ETTTEEEEEGGGTTTCSEEEEEEEETTEEE
T ss_pred             ceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceeec--CCCCCeEecCCChhhCeEEEEEEEECCceE
Confidence            356788999  99999999985 7889999997  6655444322211  123479999999999999999999875544


Q ss_pred             EEE-EEEEEecCCCCCC--CCc-ceEEecCceEEEEecCCCC-CCCcceeeEEEEEEecCCCceEEE-------EeecCc
Q psy12425         78 SGT-FTINITGLPGPPI--GPL-DVSEITKHTCTLHWNPPKY-DGGLKVTHYVVERRDISMPHWICI-------STTCHD  145 (591)
Q Consensus        78 ~~~-~~l~v~~~p~~p~--~~~-~~~~~~~~~~~l~w~~p~~-~~~~~~~~y~~~~~~~~~~~~~~~-------~~~~~~  145 (591)
                      ... ..+.+...+.+..  .+. .+....+..+.|.|..... .....+.+|.-.............       ......
T Consensus       210 ~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (772)
T 3v2a_R          210 QSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL  289 (772)
T ss_dssp             ECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEE
T ss_pred             EEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEE
Confidence            332 3444433221111  111 1345567888888864321 111122222111110000000000       111234


Q ss_pred             ceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCC-CCCeEEeecCCeEEEEEecCCCCCCcceEEE
Q psy12425        146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP-GIPVVTQVGGDFVNLSWDKPLDDGGSRIQGY  224 (591)
Q Consensus       146 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y  224 (591)
                      ..+.|..+...+.+.|+|.+.|..|......   .+.+..+......+ .........|..++|.|.....+. ..+.+|
T Consensus       290 ~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~---~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~  365 (772)
T 3v2a_R          290 STLTIDGVTRSDQGLYTCAASSGLMTKKNST---FVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPP-PEIKWY  365 (772)
T ss_dssp             EEEEESSCCSTTCSEEEEEEECSSCEEEEEE---EEEEECCCC-------------------------------------
T ss_pred             EEEEECcCCcCCCeEEEEEEEcCCcceeEEE---EEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCC-CeEEEE
Confidence            5789999999999999999998766422211   11111111111111 112334556788899998643221 122222


Q ss_pred             EEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeec---cc
Q psy12425        225 WIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL---RN  301 (591)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~---~~  301 (591)
                       .+.....    .  .........|.|.++...|.|.|+|.|.|..|....+ ....+.+.     .+|.+....   ..
T Consensus       366 -~~g~~l~----~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s-~~~~l~v~-----~~P~~~~~~~~~~~  432 (772)
T 3v2a_R          366 -KNGIPLE----S--NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQS-HVVSLVVY-----VPPQIGEKSLISPV  432 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -ECCEeCC----C--CceEccceeEEEecCChhcCceEEEEEEECCcCeEEE-EEEEEEEe-----cCCcccccccCCCc
Confidence             1111100    0  1111134788999999999999999999988754322 23333333     344443221   11


Q ss_pred             cceeccccEEEEEEEcCCCCCe-eEEecCCccC--------------------------------CCC-CceEEEEe--C
Q psy12425        302 ANAIQNHNAQFQCTITGCPKPT-ISWLKGSREI--------------------------------TPS-ARHHIFAE--G  345 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p~~~-v~W~~~~~~~--------------------------------~~~-~~~~~~~~--~  345 (591)
                      ..+.+|+.+.|.|.+.+.|.+. +.|++++...                                ... .+..+...  .
T Consensus       433 ~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~  512 (772)
T 3v2a_R          433 DSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNK  512 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcce
Confidence            2378899999999999999997 9999863221                                000 01111111  1


Q ss_pred             CeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeC
Q psy12425        346 DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD  425 (591)
Q Consensus       346 ~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~  425 (591)
                      ....|.|.++  +|+|.|+|.|.|..|.......+.|..+|.+...+.    ..+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus       513 ~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~----~~~~~G~~v~l~C~~~~~p~~~v~W~k~  586 (772)
T 3v2a_R          513 TVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD----MQPTEQESVSLWCTADRSTFENLTWYKL  586 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeeccCC----cccccCCceEEEEeccCCCCCCcEEEEc
Confidence            1246777776  789999999999999998888999988887765543    2357899999999999999999999999


Q ss_pred             CeEeeeccceEE--------------------EecCCeeEEEEeccCCCcceeEEEEEEcCCCccc--eEEEEEe--cCC
Q psy12425        426 NEVIESGGHFHV--------------------ETSERHAILTIRDASNVDTAPYRVVAENDLGMDS--AIVKIQI--SDR  481 (591)
Q Consensus       426 ~~~~~~~~~~~~--------------------~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~--~~~~~~v--~~~  481 (591)
                      +..+........                    ........|.|.++..+|+|.|+|.|.|..|...  ....+.+  ..+
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~  666 (772)
T 3v2a_R          587 GPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA  666 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCC
Confidence            876543222111                    1111234599999999999999999999665542  3344444  333


Q ss_pred             CCCCCCCe-eeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        482 PDPPQFPT-VEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       482 p~~p~~~~-~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      |.--..+. .....+..+.|.|...... ...+.+|+-.. ...... ..........|.|.++...+.+.|+|.|.|.+
T Consensus       667 P~~~~~~~~~~v~~g~~~~l~C~~~g~P-~p~v~W~k~g~-~l~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  743 (772)
T 3v2a_R          667 PTITGNLENQTTSIGESIEVSCTASGNP-PPQIMWFKDNE-TLVEDS-GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL  743 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEeecCCCceEEeCCCCEEEEEEeCccC-CCeEEEEECCe-ECcCCC-CeEEcCCCcEEEECcCCHHHCEEEEEEEEeCC
Confidence            32111111 1122356678888752111 11122221100 000000 00111224689999999999999999999999


Q ss_pred             cCCCCCCCc
Q psy12425        561 GRSDPSTTS  569 (591)
Q Consensus       561 G~~~~s~~~  569 (591)
                      |....+...
T Consensus       744 G~~~~~~~l  752 (772)
T 3v2a_R          744 GCAKVEAFF  752 (772)
T ss_dssp             ---------
T ss_pred             cceeEEEEE
Confidence            987665443

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=9.4e-34  Score=279.73  Aligned_cols=383  Identities=13%  Similarity=0.137  Sum_probs=250.9

Q ss_pred             EEcCCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEE
Q psy12425         70 LSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFI  149 (591)
Q Consensus        70 ~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~  149 (591)
                      +.+..|.....+.|.|..+|.....+..+....+..++|.|....     .+.   +.+....- .     .......+.
T Consensus        18 ~~~~~g~~~~~i~l~v~~pP~i~~~~~~~~v~~G~~v~l~C~~~~-----~v~---W~~~~~~~-~-----~~~~~~~L~   83 (524)
T 2ec8_A           18 LRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG-----FVK---WTFEILDE-T-----NENKQNEWI   83 (524)
T ss_dssp             C--------------CCCCCEEESCCSEEECCTTSCEEEEEECTT-----EEE---EEEESSSC-C-----EEECSSEEE
T ss_pred             hhhhcCCCCCeEEcCCCCCCccCCCCceEEEeCCCeEEEEEeCCc-----eEE---EcCCCccc-c-----ccCccceEE
Confidence            345556566667788877775433333455667889999998432     232   22222111 1     233567899


Q ss_pred             EcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEee
Q psy12425        150 VQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH  229 (591)
Q Consensus       150 i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~  229 (591)
                      |.++...+.+.|+|.|.|  |.   +.. ..+.+..+..+...  ........|..++|.|.....+ ...+.+|..+..
T Consensus        84 I~~~~~~D~G~Y~C~a~n--g~---~~~-~~l~V~~p~~~~~~--~~~~~v~~G~~v~l~C~~~~~~-~~~v~W~~~~g~  154 (524)
T 2ec8_A           84 TEKAEATNTGKYTCTNKH--GL---SNS-IYVFVRDPAKLFLV--DRSLYGKEDNDTLVRCPLTDPE-VTNYSLKGCQGK  154 (524)
T ss_dssp             ESSCCSTTCEEEEEEETT--SC---EEE-EEEECCCSSCSBCC--CCCCCEETTSCEEECCCBSCCC-CSCEEEECSSSC
T ss_pred             EcccchhhCEEEEEeecC--Cc---ceE-EEEEECCCCccccc--ccceEEEcCCeEEEECcCCCCc-cceEEEEccCCc
Confidence            999999999999999998  42   111 11222211111111  1223445788999999885322 123333321111


Q ss_pred             ecCCCccEEEEeeecCCceeeecCcccCCcE-EEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccc
Q psy12425        230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQY-EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNH  308 (591)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  308 (591)
                      ......  +.  .......|.|.++...|.| .|+|.|.|..|....  ....+.+.. ....+|.+...+....+.+|+
T Consensus       155 ~l~~~~--~~--~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s--~~~~l~V~~-~~~~~p~i~~~~~~~~v~~G~  227 (524)
T 2ec8_A          155 PLPKDL--RF--IPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLS--EKFILKVRP-AFKAVPVVSVSKASYLLREGE  227 (524)
T ss_dssp             CCCSSC--EE--EEETTTEEEEESCCGGGTTCEEEEEEC----CCCC--CCEECCEEC-CCCSCCEEECSCSEEEEETTS
T ss_pred             CcCCCC--ce--eECCCccEEEeccchhhCCceEEEEEEECCceEEE--EEEEEEEEe-CCCCCCcEEecCCcceEEcCC
Confidence            111111  11  1224568999999999999 999999997654322  223333321 113578888777777899999


Q ss_pred             cEEEEEEEcCCCCCe-eEEecCCccC--CCCCceEEE---EeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        309 NAQFQCTITGCPKPT-ISWLKGSREI--TPSARHHIF---AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       309 ~~~l~c~~~~~p~~~-v~W~~~~~~~--~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      .+.|.|.+.+.|.+. +.|++++..+  .......+.   .......|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus       228 ~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V  307 (524)
T 2ec8_A          228 EFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV  307 (524)
T ss_dssp             CEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             cEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEE
Confidence            999999999999887 9999998873  322222221   1122458999999999999999999999999988999999


Q ss_pred             ecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCe-EEEeeCCeEeeecc-ceEEEecC----CeeEEEEeccCCCcc
Q psy12425        383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK-ITWYRDNEVIESGG-HFHVETSE----RHAILTIRDASNVDT  456 (591)
Q Consensus       383 ~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~-v~W~~~~~~~~~~~-~~~~~~~~----~~~~l~i~~~~~~~~  456 (591)
                      ..+|.+...+.......+..|+.+.|.|.+.|.|.|. +.|+++|..+.... .+.....+    ....|.|.++..+|+
T Consensus       308 ~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  387 (524)
T 2ec8_A          308 VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEG  387 (524)
T ss_dssp             ESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGC
T ss_pred             eccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccC
Confidence            9998876655434456788999999999999999999 99999999887654 33322222    357899999999999


Q ss_pred             eeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        457 APYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       457 g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      |.|+|.|.|..|..+..+.|.|..+|
T Consensus       388 G~Y~C~a~N~~g~~~~~~~l~V~~~P  413 (524)
T 2ec8_A          388 GTYTFLVSNSDVNAAIAFNVYVNTKP  413 (524)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEECEEE
T ss_pred             eEEEEEEEecCceEEEEEEEEEecCC
Confidence            99999999999999999999998765

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=6.7e-33  Score=259.89  Aligned_cols=316  Identities=10%  Similarity=0.091  Sum_probs=219.7

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeec--------------CCceeEEE---eCCeEEEEEcccCCCCceE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQS--------------DDRFKFTV---LDDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~---~~~~~~l~i~~~~~~d~g~   65 (591)
                      +.+.+.+|+++.|.|.+.+.|.+.+.|+|++..+..              ..|+.+..   .+...+|.|.+++.+|+|.
T Consensus         2 e~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~   81 (363)
T 1wio_A            2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (363)
T ss_dssp             EEEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred             CeEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence            457899999999999999999999999999864221              11222111   2235689999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCc
Q psy12425         66 YTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD  145 (591)
Q Consensus        66 Y~c~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~  145 (591)
                      |+|.|.|..+    .+.|.|...+..|..                                                   
T Consensus        82 Y~C~~~n~~~----~~~l~V~~~~~~~~~---------------------------------------------------  106 (363)
T 1wio_A           82 YICEVEDQKE----EVQLLVFGLTANSDT---------------------------------------------------  106 (363)
T ss_dssp             EEEEETTEEE----EEEEEEEEEEESSCS---------------------------------------------------
T ss_pred             EEEEEEECCC----cEEEEEEeCCCCCce---------------------------------------------------
Confidence            9999988743    445555431111000                                                   


Q ss_pred             ceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEE
Q psy12425        146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYW  225 (591)
Q Consensus       146 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~  225 (591)
                            .+..+....+.|.+...                                   ....++|..+   + ..+    
T Consensus       107 ------~v~~G~~v~l~C~~~~~-----------------------------------p~~~v~W~~~---~-~~~----  137 (363)
T 1wio_A          107 ------HLLQGQSLTLTLESPPG-----------------------------------SSPSVQCRSP---R-GKN----  137 (363)
T ss_dssp             ------SEESBSCEEEEEECCTT-----------------------------------CCCCEEEECS---S-SCE----
T ss_pred             ------EEecCCCEEEEEEcCCC-----------------------------------CCCeEEEEcC---C-Ccc----
Confidence                  01133444555544210                                   0023667653   1 111    


Q ss_pred             EEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeecccccee
Q psy12425        226 IDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI  305 (591)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  305 (591)
                                       ......|.|.++...|.|.|+|.|.|..+...   ....+.+..     +|...   ....+.
T Consensus       138 -----------------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~---~~~~l~v~~-----~p~~~---~~~~~~  189 (363)
T 1wio_A          138 -----------------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE---FKIDIVVLA-----FQKAS---SIVYKK  189 (363)
T ss_dssp             -----------------EEESSEEEECSBCGGGCEECEEEEEETTEEEE---ECCEECEEC-----CSCSE---EEEEEE
T ss_pred             -----------------cccceEEEEeeCChhcCCEEEEEEecCCCeEE---EEEEEEEec-----CCCCC---CceEEe
Confidence                             11346899999999999999999998644321   223333331     22111   345578


Q ss_pred             ccccEEEEEEEcC-----CCCCeeEEecCCccCCC--------CCceEEEE----------eCCeEEEEEcceecccceE
Q psy12425        306 QNHNAQFQCTITG-----CPKPTISWLKGSREITP--------SARHHIFA----------EGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       306 ~g~~~~l~c~~~~-----~p~~~v~W~~~~~~~~~--------~~~~~~~~----------~~~~~~l~i~~~~~~d~g~  362 (591)
                      +|+.+.|.|.+.+     .|.+.+.|++++..+..        ..++.+..          .+...+|.|.++..+|+|.
T Consensus       190 ~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  269 (363)
T 1wio_A          190 EGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGS  269 (363)
T ss_dssp             TBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEE
T ss_pred             cCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcE
Confidence            8999999998877     78899999999988765        34444432          2234589999999999999


Q ss_pred             EEEEEEeC--CcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCe--EEEeeCCeEeeeccceEEE
Q psy12425        363 YVCRAVNK--GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK--ITWYRDNEVIESGGHFHVE  438 (591)
Q Consensus       363 y~c~a~n~--~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~--v~W~~~~~~~~~~~~~~~~  438 (591)
                      |+|.|.|.  .|.....+.|.|..                ..|..+.|.|.+.|.|.|.  +.|++++..+..       
T Consensus       270 Y~C~a~n~~~~g~~~~~~~l~V~~----------------v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~-------  326 (363)
T 1wio_A          270 GNLTLALEAKTGKLHQEVNLVVMR----------------ATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV-------  326 (363)
T ss_dssp             EEEEECBTTTTCCEEEEEEEEEEE----------------ECCCSSSEEEEEESSCCTTCCEEEECSSSSCSE-------
T ss_pred             EEEEEEEhhhcCeEEEEEeEEEEE----------------ecCCCeeEEEEEccccCCCccEEEEeCCCceee-------
Confidence            99999999  89888888888862                1278899999999999998  999999977653       


Q ss_pred             ecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       439 ~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                          ...|.|.++..+|+|.|+|.|.|. |....+..+.|
T Consensus       327 ----~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          327 ----SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             ----EESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred             ----eeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence                344677899999999999999965 55555555554

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=1.2e-31  Score=258.85  Aligned_cols=369  Identities=14%  Similarity=0.182  Sum_probs=233.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCC----ceEEEEECC--EEe------------ecCCceeEEEeCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQP----MEVSLTKNG--RVV------------QSDDRFKFTVLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~----~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|+++.|.|.+.+.|.    +.+.|+|++  ..+            ....|+.+...+...+|.|.+++.+|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (438)
T 1qgc_4            8 PASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDV   87 (438)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCC
Confidence            77899999999999999988876    489999963  221            113566666666778999999999999


Q ss_pred             eEEEEEEEcCCeee-EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEee
Q psy12425         64 GDYTVNLSNSSGSV-SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT  142 (591)
Q Consensus        64 g~Y~c~~~n~~g~~-~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~  142 (591)
                      |.|+|.|.|..+.. ...+.|.|.....+|..  .+.            ++.                            
T Consensus        88 G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v--~~~------------~~~----------------------------  125 (438)
T 1qgc_4           88 ATYYCQQSNEVPLTFGAGTKLDLKRADAAPTV--SIF------------PPS----------------------------  125 (438)
T ss_dssp             EEEEEEECSSTTCCBCCCEEEEECCCCBCCEE--EEE------------CCC----------------------------
T ss_pred             eeEEEEEecCCCccccCceeEEecCCCCCCEE--Eec------------CCC----------------------------
Confidence            99999999987643 33456666432212210  000            000                            


Q ss_pred             cCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceE
Q psy12425        143 CHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQ  222 (591)
Q Consensus       143 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~  222 (591)
                        .      ....+....+.|.+....                                 ...+.++|...    +..+.
T Consensus       126 --~------~~~~g~~~~l~C~~~g~~---------------------------------p~~~~v~W~k~----g~~~~  160 (438)
T 1qgc_4          126 --S------EQLTSGGASVVCFLNNFY---------------------------------PKDINVKWKID----GSERQ  160 (438)
T ss_dssp             --H------HHHHTTEEEEEEEEEEEB---------------------------------SSCEEEEEEET----TEEEC
T ss_pred             --h------hhccCCceEEEEEEcccc---------------------------------CCCcEEEEEEC----CEEcC
Confidence              0      001233556667664210                                 00146778762    11111


Q ss_pred             ---EEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeec
Q psy12425        223 ---GYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL  299 (591)
Q Consensus       223 ---~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~  299 (591)
                         .+...........+.       ....|.|.++...|.|.|+|.|.|..|..     ...+.+...   .++.....+
T Consensus       161 ~~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-----~~~~~~~~~---~~~~~~~~~  225 (438)
T 1qgc_4          161 NGVLNSWTDQDSKDSTYS-------MSSTLTLTKDEYERHNSYTCEATHKTSTS-----PIVKSFNRN---ECEVMLVES  225 (438)
T ss_dssp             TTEEEEEECCCTTTCCEE-------EEEEEEEEHHHHHTCCEEEEEEEETTCSS-----CEEEEEETT---C-CCEEEEE
T ss_pred             CCceeccccccCCCCcEE-------EEEEEEEeCcccCCCCeEEEEEEecccCC-----ceecccccc---cceeEEecC
Confidence               000011100111110       12468899999999999999999987643     122333211   122333344


Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecC--CccCC-----------------CCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKG--SREIT-----------------PSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ....+.+|+.+.|.|.+.|.|  .+.+.|+++  +..+.                 ...++.+..+  +...+|.|.+++
T Consensus       226 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  305 (438)
T 1qgc_4          226 GGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLR  305 (438)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCC
Confidence            566788999999999999988  679999986  43221                 1245555544  346689999999


Q ss_pred             cccceEEEEEEEeCCc-----ceeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEeeC
Q psy12425        357 GVDADEYVCRAVNKGG-----VKSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWYRD  425 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~  425 (591)
                      .+|+|.|+|.|.|..+     .......+.|..    +|.+...+   ....+..|+.+.|.|.+.|. |.+ .+.|+++
T Consensus       306 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~---~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~  382 (438)
T 1qgc_4          306 SADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLA---PGSAAAAASMVTLGCLVKGYFPEPVTVTWNSG  382 (438)
T ss_dssp             GGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEEC---CCGGGCCSSEEEEEEEEESCBSSCCEEEEGGG
T ss_pred             hhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcC---cccccccCCcEEEEEEeccccCCCcEEEEecC
Confidence            9999999999999554     223445677763    23322111   11234679999999999997 887 9999999


Q ss_pred             CeEeeeccceEEEecC---CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        426 NEVIESGGHFHVETSE---RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       426 ~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      |..+.......+...+   ..+.|.|.++..+| |.|+|.|.|..|.......+
T Consensus       383 g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i  435 (438)
T 1qgc_4          383 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  435 (438)
T ss_dssp             TCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence            9876532211122211   12468999998888 99999999999986555444

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=247.12  Aligned_cols=169  Identities=19%  Similarity=0.292  Sum_probs=140.7

Q ss_pred             EEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEec----
Q psy12425        310 AQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT----  384 (591)
Q Consensus       310 ~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~----  384 (591)
                      +.|.|.+.+ .|.+.+.|++++..+....++.+...+....|.|.++..+|+|.|+|.|.|..|.......+.+..    
T Consensus       125 ~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~  204 (317)
T 2y25_A          125 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEA  204 (317)
T ss_dssp             EEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHH
T ss_pred             cEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeecccc
Confidence            456787766 578899999999999888888888888888999999999999999999999988887777766531    


Q ss_pred             ----------------CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEec-CCeeEEE
Q psy12425        385 ----------------APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS-ERHAILT  447 (591)
Q Consensus       385 ----------------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~  447 (591)
                                      .|.+...  ......+..|+.+.|.|.+.|.|.|.+.|+++|..+....++.+... +....|.
T Consensus       205 ~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~  282 (317)
T 2y25_A          205 YAEFQRLKQAAIAEKNRARVLGG--LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFT  282 (317)
T ss_dssp             HHHHHHHHHHHHHTTTSCEEEEB--CCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEE
T ss_pred             chhhcccCCcccCcCCCCccccc--CCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEE
Confidence                            1111111  12345678999999999999999999999999999988777777665 5678999


Q ss_pred             EeccCCCcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        448 IRDASNVDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       448 i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      |.++..+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       283 i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          283 INGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             EBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            999999999999999999999999998888864

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=9.5e-29  Score=247.80  Aligned_cols=396  Identities=12%  Similarity=0.113  Sum_probs=251.9

Q ss_pred             ceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEE
Q psy12425        146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYW  225 (591)
Q Consensus       146 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~  225 (591)
                      ..+.|.++...+.+.|+|.|.|..|.....   ..+.+..+......  ........|..++|.|.....+....+.+|.
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~---~~l~V~~~p~~~~~--~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k  149 (585)
T 2ocw_A           75 FVVNIAQLSQDDSGRYKCGLGINSRGLSFD---VSLEVSQGPGLLND--TKVYTVDLGRTVTINCPFKTENAQKRKSLYK  149 (585)
T ss_pred             EEEEECCCCcccCEEEEEEcccCCCCceEE---EEEEEecCccccCC--CccEEEEcCCCEEEEEEecCCCCCccEEEEE
Confidence            468899999999999999999877653211   11122111111111  1234456788899999875333222344332


Q ss_pred             EEeeec----CC-----Ccc-EEEEeeec----CCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccC
Q psy12425        226 IDKHEV----GS-----DAW-QRVNVAIC----APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAK  291 (591)
Q Consensus       226 ~~~~~~----~~-----~~~-~~~~~~~~----~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~  291 (591)
                      -.....    ..     ..+ .+......    ....|.|.++...|.|.|+|.|.|..|...   ....+.+..    .
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~---~~~~l~V~~----~  222 (585)
T 2ocw_A          150 QIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNK---KNADLQVLK----P  222 (585)
T ss_pred             CCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcccc---ceEEEEEcc----C
Confidence            110000    00     000 01111110    112799999999999999999998877532   344555542    2


Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCC---CeeEEe-cCCccCC------------CCCceEEEEe--CCeEEEEEc
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPK---PTISWL-KGSREIT------------PSARHHIFAE--GDTYTLIIN  353 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~---~~v~W~-~~~~~~~------------~~~~~~~~~~--~~~~~l~i~  353 (591)
                      +|.      .+.+.+|+.+.|.|.+ +.+.   +.+.|+ +++....            ...++.+...  .+.++|.|.
T Consensus       223 ~p~------~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~  295 (585)
T 2ocw_A          223 EPE------LVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVIT  295 (585)
T ss_pred             CCc------eeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEc
Confidence            232      2346789999999997 4444   678896 7773211            1233444322  344589999


Q ss_pred             ceecccceEEEEEEEeCCccee----eeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeE----EEee-
Q psy12425        354 SVYGVDADEYVCRAVNKGGVKS----TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI----TWYR-  424 (591)
Q Consensus       354 ~~~~~d~g~y~c~a~n~~g~~~----~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v----~W~~-  424 (591)
                      ++..+|+|.|+|.|.|..+...    ..+.|.|..+|.+...+   ....+..|+.+.|.|.+.+.|.+.+    .|++ 
T Consensus       296 ~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~---~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~  372 (585)
T 2ocw_A          296 GLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSP---TVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGA  372 (585)
T ss_pred             cCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccCC---cceEEEeCCcEEEEEecCCCCCccEEEEEEEEcc
Confidence            9999999999999999533332    67889999888876554   3456788999999999999999987    7999 


Q ss_pred             -CCe--Eeee---------ccceEEEec--CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCC-CCCe
Q psy12425        425 -DNE--VIES---------GGHFHVETS--ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP-QFPT  489 (591)
Q Consensus       425 -~~~--~~~~---------~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p-~~~~  489 (591)
                       +|.  .+..         ..++.+...  .....|.|.++..+|+|.|+|.| |..|..+..+.|.|...|... ....
T Consensus       373 ~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~  451 (585)
T 2ocw_A          373 QNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGN  451 (585)
T ss_pred             CCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCc
Confidence             886  4432         223333322  23345999999999999999999 999998888999887643211 1112


Q ss_pred             eeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCC-----------ceEEec-eeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        490 VEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS-----------SWIRVG-NTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       490 ~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~-----------~~~~~~-~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      +....+..+.|.|.......+.+..  .+.|...+..           .+.... ......|.|.++...+.+.|+|.|.
T Consensus       452 ~~v~~G~~v~L~C~~~~~~~~~p~~--~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  529 (585)
T 2ocw_A          452 VTAVLGETLKVPCHFPCKFSSYEKY--WCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVK  529 (585)
T ss_pred             eeEecCCcEEEEEEecCCCCCCccE--EEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeE
Confidence            2334567899999864222222322  3333322210           012221 2344699999999999999999999


Q ss_pred             cCCcCCCCC
Q psy12425        558 NVYGRSDPS  566 (591)
Q Consensus       558 n~~G~~~~s  566 (591)
                      |..|.+...
T Consensus       530 N~~G~~~~~  538 (585)
T 2ocw_A          530 QGHFYGETA  538 (585)
T ss_pred             eCCCccEEE
Confidence            999976654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1e-30  Score=238.80  Aligned_cols=272  Identities=26%  Similarity=0.417  Sum_probs=192.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeC--CeEEEEEcccCC-CCceEEEEEEEcCCeeeE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLD--DYIIIFIKEIRK-EDAGDYTVNLSNSSGSVS   78 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~-~d~g~Y~c~~~n~~g~~~   78 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.|.|+|+|..+... ++.+....  ....|.|.+++. +|+|.|+|.|.|..|..+
T Consensus        13 p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~   91 (304)
T 2yd9_A           13 PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEIT   91 (304)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEEC
T ss_pred             CCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEE
Confidence            67889999999999999999999999999999988544 44444322  347899999998 999999999999887765


Q ss_pred             EEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcE
Q psy12425         79 GTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQE  158 (591)
Q Consensus        79 ~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  158 (591)
                      ..+.|.|...+..|.                                                                 
T Consensus        92 ~~~~l~V~~~~~~p~-----------------------------------------------------------------  106 (304)
T 2yd9_A           92 VHAKLTVLREDQLPS-----------------------------------------------------------------  106 (304)
T ss_dssp             CEEEEEEECGGGCCT-----------------------------------------------------------------
T ss_pred             EEEEEEEeccccCCC-----------------------------------------------------------------
Confidence            556555543110000                                                                 


Q ss_pred             EEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEE
Q psy12425        159 YLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQR  238 (591)
Q Consensus       159 y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~  238 (591)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (304)
T 2yd9_A          107 --------------------------------------------------------------------------------  106 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcC
Q psy12425        239 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITG  318 (591)
Q Consensus       239 ~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~  318 (591)
                                                                          ..|.+...+....+..|+.+.|.|.+.|
T Consensus       107 ----------------------------------------------------~~p~i~~~~~~~~v~~g~~v~l~C~~~g  134 (304)
T 2yd9_A          107 ----------------------------------------------------GFPNIDMGPQLKVVERTRTATMLCAASG  134 (304)
T ss_dssp             ----------------------------------------------------TCCEEEECCCCEEEETTSCEEECCEEEC
T ss_pred             ----------------------------------------------------CCCeeecCCccEEEeCCCeEEEEEECcc
Confidence                                                                0011111111233567888999999999


Q ss_pred             CCCCeeEEecCCccCCCCC---ceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeee-eEEEEe---cCCcccCC
Q psy12425        319 CPKPTISWLKGSREITPSA---RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK-AELIIM---TAPKFNVP  391 (591)
Q Consensus       319 ~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~-~~l~v~---~~p~~~~~  391 (591)
                      .|.+.+.|++++..+....   ++....++   .|.|.++..+|+|.|+|.|.|..|..... ..+.|.   .+|.+...
T Consensus       135 ~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~  211 (304)
T 2yd9_A          135 NPDPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL  211 (304)
T ss_dssp             SSCCEEEEEETTEECCGGGGTTSEEECTTS---CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEEC
T ss_pred             CCCCeEEEEECCEECcCCCCcceEEeCCCe---EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEec
Confidence            9999999999988776432   22222222   79999999999999999999999877543 556664   34555443


Q ss_pred             CCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccc
Q psy12425        392 PRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS  471 (591)
Q Consensus       392 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~  471 (591)
                      +.   ...+..|+.+.|.|.+.|.|.|.+.|++++..+.....+.    .....|.+.++  .|+|.|+|.|.|..|...
T Consensus       212 ~~---~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~  282 (304)
T 2yd9_A          212 PM---SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KDSANYTCVAMSSLGVIE  282 (304)
T ss_dssp             CC---CBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC----BSEEEEEECSC--CSCEEEEEEEEETTEEEE
T ss_pred             CC---ceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc----CCcEEEEEccc--ccCEEEEEEEEeCCCcEE
Confidence            32   3456889999999999999999999999999886554321    23455666665  589999999999999999


Q ss_pred             eEEEEEecCCCC
Q psy12425        472 AIVKIQISDRPD  483 (591)
Q Consensus       472 ~~~~~~v~~~p~  483 (591)
                      ..+.|.|..++.
T Consensus       283 ~~~~l~V~~~~~  294 (304)
T 2yd9_A          283 AVAQITVKSLPK  294 (304)
T ss_dssp             EEEEEC------
T ss_pred             EEEEEEEecCcc
Confidence            999999987663

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.98  E-value=2.1e-29  Score=257.94  Aligned_cols=461  Identities=16%  Similarity=0.147  Sum_probs=278.8

Q ss_pred             cCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEccc-CCCCceEEEEEEEcCCeeeEEE-EEEEEe
Q psy12425          9 EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-RKEDAGDYTVNLSNSSGSVSGT-FTINIT   86 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~Y~c~~~n~~g~~~~~-~~l~v~   86 (591)
                      .++++.|.|.+.|.|.+.+.|.|+|..+..-.         ...+.|..+ .....+.|+|.+.|..|..... +.+.+.
T Consensus        90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~---------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~  160 (731)
T 2v5y_A           90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWN---------RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH  160 (731)
T ss_dssp             CSEEEEEEEEETTCCCCSEEEEECCCCCSSCE---------EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESS
T ss_pred             CcceEEEEEecCCCCccceeEEEeCCcCCcee---------EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeec
Confidence            45689999999999999999999998763221         124556555 3333578888887777765322 222222


Q ss_pred             cCCCCCC--CCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe---ecCcceEEEcCCcCCcEEEE
Q psy12425         87 GLPGPPI--GPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST---TCHDTTFIVQGLTEGQEYLF  161 (591)
Q Consensus        87 ~~p~~p~--~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~~  161 (591)
                      ..+.+|.  .+..+....+..+.|.|....... ..+.+|.. ..+.....+.....   ......+.|.++.+.+.|.|
T Consensus       161 ~~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~-p~i~~W~~-~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y  238 (731)
T 2v5y_A          161 PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTV-AGDRLWLQ-GIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY  238 (731)
T ss_dssp             CCSSSCEECCCCCEEEETTSCEEEEEEEESCCC-TTCEEEEE-ESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEE
T ss_pred             ccccccccccccceEEeCCCcEEEEEEeCCCCC-CceeEEEe-cCCCccccccceEEeccccceEEEEEcccccccCeEE
Confidence            2222222  223455667888999997533111 12331211 01111111111111   11246899999999999999


Q ss_pred             EEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEe
Q psy12425        162 HVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV  241 (591)
Q Consensus       162 ~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~  241 (591)
                      +|.|.|..|.+.....  .+.+.   .+|.++..+.+.......+.|+|..+..+++.++..|.++++.. ...|.....
T Consensus       239 ~c~A~n~~G~~~s~~~--~l~V~---~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~-~~~~~~~~~  312 (731)
T 2v5y_A          239 RCMIRTEGGVGISNYA--ELVVK---EPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA-SGSWNDRQP  312 (731)
T ss_dssp             EEEEEETTEEEECCCE--EEEEE---CCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEES-SSSCEEEEE
T ss_pred             EEEEECCCCCcceeeE--EEEEe---cCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEEC-CCCceEEec
Confidence            9999999986322221  12222   25666667777778889999999987655667899999999875 456765543


Q ss_pred             eecCCceeeecCcccCCcEEEEEEEE--cCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC
Q psy12425        242 AICAPSQINIPNLIEGRQYEFRVYAQ--NEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC  319 (591)
Q Consensus       242 ~~~~~~~~~i~~l~~~~~~~y~c~a~--n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~  319 (591)
                        .....+.|.+|.+++.|.|+|.|.  |..|.+.++.. ..+......++.+|..                |.......
T Consensus       313 --~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~-~~~~t~~~~p~~~P~~----------------~~~~~~~~  373 (731)
T 2v5y_A          313 --VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPA-LRTRTKCADPMRGPRK----------------LEVVEVKS  373 (731)
T ss_dssp             --CCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCC-EEEECCCCCCSCCCEE----------------EEEEEECS
T ss_pred             --cCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCc-EEeeecCCCCCCCCce----------------eEEEeccC
Confidence              356899999999999999999999  99998775543 2222222222223322                11222222


Q ss_pred             CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCccccee
Q psy12425        320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAY  399 (591)
Q Consensus       320 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~  399 (591)
                      ....+.|...........                      ...|........+                           
T Consensus       374 ~sv~l~W~~p~~~~~~~~----------------------~~~y~v~y~~~~~---------------------------  404 (731)
T 2v5y_A          374 RQITIRWEPFGYNVTRCH----------------------SYNLTVHYCYQVG---------------------------  404 (731)
T ss_dssp             SCEEEEEECCCHHHHCSS----------------------SCEEEEEEEEESS---------------------------
T ss_pred             CeEEEEEECCCcccccce----------------------eeeEEEEEEEccC---------------------------
Confidence            333566754321110000                      0011111000000                           


Q ss_pred             ecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEec
Q psy12425        400 FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS  479 (591)
Q Consensus       400 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~  479 (591)
                         +..              -.|..          ..+........++|.+|.+...|.|++.|.|..|.+. +..+.+.
T Consensus       405 ---~~~--------------~~~~~----------~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~  456 (731)
T 2v5y_A          405 ---GQE--------------QVREE----------VSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQ  456 (731)
T ss_dssp             ---SSE--------------EEEEE----------EECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEE
T ss_pred             ---CCC--------------cccee----------EEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEE
Confidence               000              00000          0011123456788999999999999999999999863 4444444


Q ss_pred             C---CCCCCCCCeeee-ecCCeeEEEeeccccCCCcceeeEEEEeeeCCCC---------ceEEeceeeeeEEEEcCccc
Q psy12425        480 D---RPDPPQFPTVED-IGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS---------SWIRVGNTRFTTMAITGLSP  546 (591)
Q Consensus       480 ~---~p~~p~~~~~~~-~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~---------~~~~~~~~~~~~~~i~~l~~  546 (591)
                      +   +|.+|..+.+.. ...+++.|+|++|...+| .+.+|+|+|+.....         .+........+.++|.+|.|
T Consensus       457 T~~~~P~~p~~~~~~~~~~~~si~l~W~~P~~~~g-~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  535 (731)
T 2v5y_A          457 TDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYG-VITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYP  535 (731)
T ss_dssp             CCCCCCCCCCTTTCEEEEETTEEEEECCCCSCCSS-CCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCT
T ss_pred             ccCCCCCCCCcceEEeeecCCeEEEEEcCCCCCCC-CccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCC
Confidence            3   455543223332 247899999998875555 899999999865421         12222344567999999999


Q ss_pred             CceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCCCC
Q psy12425        547 GHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAP  585 (591)
Q Consensus       547 ~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~  585 (591)
                      ++.|.|+|+|.|..|.|++|.  ..++|...+|..|+.+
T Consensus       536 ~t~Y~~~V~A~n~~G~g~~s~--~~~~T~~~~P~~p~~~  572 (731)
T 2v5y_A          536 GTTYSFTIRASTAKGFGPPAT--NQFTTKISAPSMPAYE  572 (731)
T ss_dssp             TEEEEEEEEEEETTEEEEEEE--EEEECCCCCCCC----
T ss_pred             CCEEEEEEEEEeCCccCCCcc--cEEEcCCCCCCCCCcc
Confidence            999999999999999999984  3456776677666543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.98  E-value=5.5e-31  Score=256.13  Aligned_cols=350  Identities=13%  Similarity=0.089  Sum_probs=215.1

Q ss_pred             ceEEecCceEEEEecCCCCCCCcceeeEEEEEEec---CCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCC
Q psy12425         97 DVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI---SMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGP  173 (591)
Q Consensus        97 ~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~  173 (591)
                      .+....+.+++|.|....    .+...|.+.+...   ......  .......++.|.++...+.+.|+|.+.|..|...
T Consensus        57 ~~~v~~g~~~~L~c~~~~----~~~~~~~W~~~~~~l~~~~~~~--~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~  130 (527)
T 3qs9_E           57 AVEVDVSASITLQVLVDA----PGNISCLWVFKHSSLNCQPHFD--LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT  130 (527)
T ss_dssp             EEEECSSCCEEEEEECSC----CSSCEEEEEETTEEECCCCBC-------CEEEEEESSCCSSSCSEEEEEEEC--CEEE
T ss_pred             eEEEeccccEEEEEEEec----CCceeEEEEecCCccCcccccC--CCcceEEEEEECcCChhhCeeEEEEEEeccccEE
Confidence            345556788888887432    2223344433211   111111  1112234589999999999999999998766432


Q ss_pred             CCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecC
Q psy12425        174 PLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPN  253 (591)
Q Consensus       174 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  253 (591)
                      ...   .+....  .+...+..+.. ...+..+.|.|.....+. ..+.++ .......  ...   .............
T Consensus       131 ~~~---~v~v~~--~~~~~~~~p~~-~~~~~~~~L~C~a~G~P~-P~i~W~-~~~~~~~--~~~---~~~~~~~~~~~~~  197 (527)
T 3qs9_E          131 ILF---TVSIRN--TLLYTLRRPYF-RKMENQDALVCISESVPE-PIVEWV-LCDSQGE--SCK---EESPAVVKKEEKV  197 (527)
T ss_dssp             EEE---EEEEC-------CEEEEEE-EECSSSSCEEEEEEESSC-CEEEEE-EC------------------CEEECCSE
T ss_pred             EEE---EEEECC--ceeeccCCCcE-EecCCceEEEEEEceecC-CeEEEE-ECCCCCc--ccc---ccCCcEEEEeeee
Confidence            110   011110  00001111111 122444567776532221 112221 1100000  000   0000111223344


Q ss_pred             cccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEc-CCCCCeeEEecCCcc
Q psy12425        254 LIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSRE  332 (591)
Q Consensus       254 l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~  332 (591)
                      +...|.|.|+|.|.|..|....  ....+.+.     .+|.+  .+....+.+|+.+.|.|.+. +.|.+.+.|++++..
T Consensus       198 ~~~~d~G~Y~C~A~N~~G~~~~--~~~~l~V~-----~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~  268 (527)
T 3qs9_E          198 LHELFGTDIRCCARNELGRECT--RLFTIDLN-----QTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA  268 (527)
T ss_dssp             ECCCCSSCEEEEEECSSCEEEE--ECEEEESS-----SCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSC
T ss_pred             ccccCCEEEEEEEEeCCCcccc--eEEEEEEe-----ccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEE
Confidence            5688999999999999886432  22344443     22322  33466788999999999996 999999999999988


Q ss_pred             CCCCCceEEE-Ee-C----CeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeE
Q psy12425        333 ITPSARHHIF-AE-G----DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV  406 (591)
Q Consensus       333 ~~~~~~~~~~-~~-~----~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~  406 (591)
                      +.....+... .. +    ...+|.|.++..+|+|.|+|.|.|.   ....+.|.|..+|.+...+.. ....+..|+.+
T Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~-~~~~v~~G~~v  344 (527)
T 3qs9_E          269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSS-EDYEIDQYEEF  344 (527)
T ss_dssp             CCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSC-CEECCCTTCCC
T ss_pred             CCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCc-ccEEEcCCCeE
Confidence            7654333221 11 1    1236999999999999999999987   667788888888876654433 23567889999


Q ss_pred             EEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       407 ~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      .|.|.+.|.|.|.+.|+++|..+.....+.    .....|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|
T Consensus       345 ~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P  416 (527)
T 3qs9_E          345 CFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKP  416 (527)
T ss_dssp             CEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCC
T ss_pred             EEEEEEEecCCCEEEEEECCEECcCCcccc----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCC
Confidence            999999999999999999999886554422    245689999999999999999999999999999999998776

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.98  E-value=4.7e-29  Score=225.57  Aligned_cols=268  Identities=22%  Similarity=0.308  Sum_probs=215.5

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .||.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+...+|.|.++..+|+|.|+|.|.|.
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~   83 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV   83 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEEC
Confidence            57888888888889999999999999999999999999999998888888777777889999999999999999999999


Q ss_pred             CcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEec
Q psy12425        371 GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRD  450 (591)
Q Consensus       371 ~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~  450 (591)
                      .|.......|.|..+|.+...+.  ....+..|+.+.|.|.+.|.|.+.+.|++++..+.....+.+........|.|.+
T Consensus        84 ~g~~~~~~~l~V~~~p~~~~~~~--~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~  161 (284)
T 2rik_A           84 AGKDSCSAQLGVQEPPRFIKKLE--PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYN  161 (284)
T ss_dssp             TEEEEEEEEEEEECCCEEEECCC--SEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECS
T ss_pred             CceEEEEEEEEccCCCcccccCC--CceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECC
Confidence            99988889999999887654332  3345788999999999999999999999999999887777777777889999999


Q ss_pred             cCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCe-eeeecCCeeEEEeeccccCCCcceeeEEEEee---eCCCC
Q psy12425        451 ASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPT-VEDIGHDSLALVWRAPIWDGGSNITNYIVEKR---EHPMS  526 (591)
Q Consensus       451 ~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~-~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~---~~~~~  526 (591)
                      +...|.|.|+|.|.|..|..+..+.+.+..+|.....+. .....+..+.|.|.....    +...+.+...   .....
T Consensus       162 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~----p~~~v~W~~~~~~~~~~~  237 (284)
T 2rik_A          162 LSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGT----PPFQVSWHKDKRELRSGK  237 (284)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSS----SCCEEEEEETTEEECBTT
T ss_pred             CCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEec----CCCEEEEEECCEECcCCC
Confidence            999999999999999999999999999988774322221 223356679999986321    2222222221   11122


Q ss_pred             ceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCC
Q psy12425        527 SWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSD  564 (591)
Q Consensus       527 ~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~  564 (591)
                      .+..........+.|.++...+.+.|+|.|.|..|...
T Consensus       238 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  275 (284)
T 2rik_A          238 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYT  275 (284)
T ss_dssp             TEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCcee
Confidence            23333333446899999999999999999999999643

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.97  E-value=5.8e-28  Score=243.13  Aligned_cols=444  Identities=16%  Similarity=0.139  Sum_probs=266.2

Q ss_pred             CCCceEEEEEEEcCCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCC------
Q psy12425         60 KEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM------  133 (591)
Q Consensus        60 ~~d~g~Y~c~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~------  133 (591)
                      .++.|.+.| +.|..|..-......+...|.+|...+.+......++.|+|.++...++.++. |.|+++...+      
T Consensus       132 ~~c~g~~~C-c~n~cG~~C~~P~~~~~~~P~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~~~  209 (680)
T 1zlg_A          132 NECSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSED  209 (680)
T ss_pred             ccCCCcccc-ccccccccccccceeeecccccccccceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcCcc
Confidence            456788888 45666654222223356778888433778888999999999988655566777 9999987633      


Q ss_pred             --CceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEee--cCC---eE
Q psy12425        134 --PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQV--GGD---FV  206 (591)
Q Consensus       134 --~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~---~v  206 (591)
                        ..|..+.. .....+.+.+|.+++.|.|+|.|.|..|....+.....+.......+|.+|..+.+...  ..+   ++
T Consensus       210 ~~~~w~~v~~-~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~sv  288 (680)
T 1zlg_A          210 DATHWQTVAQ-TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTV  288 (680)
T ss_pred             ccCceEEEEe-cCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCceEE
Confidence              56776654 45678999999999999999999999984333332223332222357778888888777  677   99


Q ss_pred             EEEEecCCCCCCcceEEEEEEeeec-------CCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCc
Q psy12425        207 NLSWDKPLDDGGSRIQGYWIDKHEV-------GSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS  279 (591)
Q Consensus       207 ~l~w~~~~~~~~~~~~~y~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~  279 (591)
                      .|+|.+|...+ .++.+|.|+++..       ....|...... .....++|.+|.++..|.|++.|.|..|.+..+...
T Consensus       289 ~l~W~pP~~~~-g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~  366 (680)
T 1zlg_A          289 TIVWDLPEEPD-IPVHHYKVFWSWMVSSKSLVPTKKKRRKTTD-GFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAK  366 (680)
T ss_pred             EEEecCCCCCC-CceeEEEEEEEecccccccCCccceEEEEEc-CCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCc
Confidence            99999876443 5799999998822       12245544332 244789999999999999999999999988766554


Q ss_pred             ceEEEcCCCccCCCeEEeeccccce--eccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceec
Q psy12425        280 NSVQIKDPMAAKAPEIIVPLRNANA--IQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYG  357 (591)
Q Consensus       280 ~~~~~~~~~~~~~p~~~~~~~~~~~--~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  357 (591)
                      ..+.+....  .+|.    +.++.+  .....+.|. .....+...+.|...... .....|.         +.......
T Consensus       367 ~~v~~~T~~--~~P~----p~~l~~~~~s~tsi~lp-~~~~~~~~~l~W~~P~~~-~~~~~y~---------v~w~~~~~  429 (680)
T 1zlg_A          367 VSLHFTSTH--ATNN----KEQLVKTRKGGIQTQLP-FQRRRPTRPLEVGAPFYQ-DGQLQVK---------VYWKKTED  429 (680)
T ss_pred             eeEEEECCC--CCCC----ccccccccccCcccccc-ccccCCCccccccCCccc-CCcceEE---------EEEeCCCC
Confidence            444443221  1121    011111  111122221 001122223456432100 0000011         11100000


Q ss_pred             ccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeee-ccceE
Q psy12425        358 VDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES-GGHFH  436 (591)
Q Consensus       358 ~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~-~~~~~  436 (591)
                      .....|.                                                       |.|......... .....
T Consensus       430 ~~v~~Y~-------------------------------------------------------V~w~~~~~~~~~~~~~~~  454 (680)
T 1zlg_A          430 PTVNRYH-------------------------------------------------------VRWFPEACAHNRTTGSEA  454 (680)
T ss_pred             CccceEE-------------------------------------------------------EEEeeeecccCCCCccee
Confidence            0001111                                                       111100000000 00000


Q ss_pred             EEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE-----------------EEec--------CCCCCCCC----
Q psy12425        437 VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK-----------------IQIS--------DRPDPPQF----  487 (591)
Q Consensus       437 ~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~-----------------~~v~--------~~p~~p~~----  487 (591)
                      .........++|.+|.+...|.+++.|.|..|.+.....                 +...        ..+.+|.+    
T Consensus       455 ~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~~  534 (680)
T 1zlg_A          455 SSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSAS  534 (680)
T ss_pred             eeeeccCceEEecCCCCCCeEEEEEEEecCCCCCCccccceeCCCccccccCCccccccCCCCccccccccCCcccccee
Confidence            011223567889999999999999999999985421100                 0000        01256777    


Q ss_pred             CeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCc----e--EEe-----ceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        488 PTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS----W--IRV-----GNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       488 ~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~----~--~~~-----~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      +.+...+.. +.|+|++|..++++.|++|.|.|+......    +  ...     .......++|.+|.|++.|.|+|+|
T Consensus       535 v~v~~~~~t-i~lsW~pP~~~~ng~I~gY~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A  613 (680)
T 1zlg_A          535 FIVQDVNIT-GHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQV  613 (680)
T ss_pred             EEEeccCce-EEEEecCCCCCCCCCceeEEEEEEEccCCCccccccceeeecccccCCcccEEEecCCCCCceEEEEEEE
Confidence            445555555 999999987554569999999998653222    1  111     1234679999999999999999999


Q ss_pred             EcCCcCCCCCCCcceEEeccccccCCC
Q psy12425        557 ENVYGRSDPSTTSDLITTYGELLSGME  583 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~~~t~~~~p~~~~  583 (591)
                      .|..|.|+. .. ..++|+..+|..|.
T Consensus       614 ~n~~G~G~~-~~-~~~~T~~~~P~~P~  638 (680)
T 1zlg_A          614 LTPGGEGPA-TI-KTFRTPELPPSSAH  638 (680)
T ss_pred             EcCCCcCCC-cc-eEEECCCCCCCCCC
Confidence            999999988 43 44566665554443

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.97  E-value=2.6e-29  Score=228.20  Aligned_cols=173  Identities=25%  Similarity=0.461  Sum_probs=132.5

Q ss_pred             eeccccEEEEEEEcCCCCCeeEEecCCccCCC--CCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce--eeeeE
Q psy12425        304 AIQNHNAQFQCTITGCPKPTISWLKGSREITP--SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK--STKAE  379 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~--~~~~~  379 (591)
                      +.+|+.+.|.|.+.+.|.+.+.|++++..+..  ..++.+..++   +|.|.++...|.|.|+|.|.|..+..  .....
T Consensus       110 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~  186 (291)
T 2wim_A          110 FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDII  186 (291)
T ss_dssp             EETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTS---CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEE
T ss_pred             hcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCC---CEEEEecchhhCEEEEEEEEECCCCeeEEeeEE
Confidence            34567788888888888889999998877653  2334333333   69999999999999999999987554  34567


Q ss_pred             EEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeE
Q psy12425        380 LIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY  459 (591)
Q Consensus       380 l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y  459 (591)
                      +.+..+|.+...+.. ....+..|+.+.|.|.+.|.|.|.+.|+++|..+.....+.+.  .....|.|.++...|.|.|
T Consensus       187 ~~v~~~p~~~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y  263 (291)
T 2wim_A          187 VIVNVPPAISMPQKS-FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPY  263 (291)
T ss_dssp             EEEEBCCCCBCSCSE-EECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEEC--STTCEEEEESCCSTTCEEE
T ss_pred             EEeccCCccccCccc-ccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEc--CCccEEEEeeCCcccCEEE
Confidence            778888876654321 1335678999999999999999999999999998877666543  3467899999999999999


Q ss_pred             EEEEEcCCCccceEEEEEecCCC
Q psy12425        460 RVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       460 ~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      +|.|.|..|..+..+.+.+..++
T Consensus       264 ~C~a~N~~G~~~~~~~l~v~~~~  286 (291)
T 2wim_A          264 VCRATNKAGEDEKQAFLQVFVQH  286 (291)
T ss_dssp             EEEEEETTEEEEEEEEEEC----
T ss_pred             EEEEEECCCceeeeEEEEEEEec
Confidence            99999999999999999998765

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=6e-29  Score=228.42  Aligned_cols=170  Identities=15%  Similarity=0.278  Sum_probs=133.7

Q ss_pred             cceeccccEEEEEEEc-CCCCCeeEEecCCccCCCCCceEEEEe--CCeEEEEEcceecccceEEEEEEEeCCcceeeee
Q psy12425        302 ANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAE--GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA  378 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~  378 (591)
                      ..+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+..+  +...+|.|.++..+|+|.|+|.|.|..+....  
T Consensus       117 ~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--  194 (312)
T 2y23_A          117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHS--  194 (312)
T ss_dssp             EEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEE--
T ss_pred             eEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEE--
Confidence            3467788999999998 899999999999999988877777654  55678999999999999999999865443332  


Q ss_pred             EEEEe---------------------cCCcccCCCCcccceeecCCCeEEEEEeeeccCCC-eEEEeeCCeEeeeccceE
Q psy12425        379 ELIIM---------------------TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFH  436 (591)
Q Consensus       379 ~l~v~---------------------~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~  436 (591)
                      .+.+.                     .+|.+..+    ....+..|+.+.|.|.+.+.|.| .+.|++++..+..+.++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~  270 (312)
T 2y23_A          195 TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY----LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD  270 (312)
T ss_dssp             EEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE----EEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC-
T ss_pred             EEEEcchhhhhhcccccccccchhhccCCceeec----ceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEE
Confidence            23321                     11222111    11457899999999999999998 999999999998766666


Q ss_pred             EEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEec
Q psy12425        437 VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS  479 (591)
Q Consensus       437 ~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~  479 (591)
                      +.  +....|.|.++..+|+|.|+|.|.|..|.....+.|.++
T Consensus       271 ~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          271 FK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             -----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             EE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            55  456899999999999999999999999999988888764

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=4.3e-27  Score=232.07  Aligned_cols=326  Identities=13%  Similarity=0.141  Sum_probs=199.2

Q ss_pred             CcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCccccc-CCCCCCCCC-CCCeEEeecCCeEEEEEecCCCCCCc-c
Q psy12425        144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK-SPYDKPSPP-GIPVVTQVGGDFVNLSWDKPLDDGGS-R  220 (591)
Q Consensus       144 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~-~~~~~p~~~-~~~~~~~~~~~~v~l~w~~~~~~~~~-~  220 (591)
                      ....+.|.++...+.+.|+|.|.|..|..........+.+. .+..+|... .........+..++|.|.....+... .
T Consensus        68 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~  147 (523)
T 2rcj_C           68 TSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVT  147 (523)
T ss_pred             CEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceE
Confidence            34579999999999999999999976532111111111111 101111100 01112233567889999875322211 2


Q ss_pred             eEEEEEEeeecCCCccEEEEeeecC-----CceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeE
Q psy12425        221 IQGYWIDKHEVGSDAWQRVNVAICA-----PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEI  295 (591)
Q Consensus       221 ~~~y~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~  295 (591)
                      +.+|. ...................     ...|.|.++...|.|.|+|.|.|..|....   ...+.. ......+|.+
T Consensus       148 v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~---~~~~~~-~~~~~~~P~v  222 (523)
T 2rcj_C          148 VAWKA-DGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK---TVAPTE-CSASTKGPSV  222 (523)
T ss_pred             EEEec-CCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccccc---ceeeee-cCCCCcCCEE
Confidence            22221 1111111000000000000     135889999999999999999998774322   111111 1112345666


Q ss_pred             EeeccccceeccccEEEEEEEcCC-CCC-eeEEecCCccCCCCCceEEEEeCC----eEEEEEcceecccceEEEEEEEe
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGC-PKP-TISWLKGSREITPSARHHIFAEGD----TYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ........+.+|+.+.|.|.+.|. |.+ .+.|++++..+.......+...++    ...|.|.++..+| |.|+|.|.|
T Consensus       223 ~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n  301 (523)
T 2rcj_C          223 FPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNH  301 (523)
T ss_pred             EecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEe
Confidence            544344456899999999999886 877 899999987654221111111222    2379999999999 999999999


Q ss_pred             CCcceeeeeEEEEecCCcccC-CCCcccceeecCCCeEEEEEeeeccCC----CeEEEeeCCeEeeeccceEEEec-C--
Q psy12425        370 KGGVKSTKAELIIMTAPKFNV-PPRFRDTAYFDKGENVVVKIPFTGYPK----PKITWYRDNEVIESGGHFHVETS-E--  441 (591)
Q Consensus       370 ~~g~~~~~~~l~v~~~p~~~~-~~~~~~~~~~~~g~~~~l~c~~~~~p~----~~v~W~~~~~~~~~~~~~~~~~~-~--  441 (591)
                      ..|.......+.+...|.+.. ++..  ...+..|+.+.|.|.+.|.|+    +.|.|+++|..+........... +  
T Consensus       302 ~~g~~~~~~~l~v~~~P~~~~~~p~~--~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~  379 (523)
T 2rcj_C          302 KPSNTKVDKRVEPLSLPSVFLFPPKP--KDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNST  379 (523)
T ss_pred             CCCCcceEEecCCCcCceEEecCCCc--hhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCc
Confidence            999877777776666565432 2221  112577999999999998654    49999999998865443221111 1  


Q ss_pred             --CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        442 --RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       442 --~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                        ..+.|.|..+..+|+|.|+|.|.|..|.......+.
T Consensus       380 ~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~  417 (523)
T 2rcj_C          380 YRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTIS  417 (523)
T ss_pred             EEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEE
Confidence              134688999999999999999999988776555554

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.96  E-value=1.4e-28  Score=237.25  Aligned_cols=367  Identities=14%  Similarity=0.190  Sum_probs=218.5

Q ss_pred             CceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEEee-----------------cCCceeEEEe--CCeEEEEEccc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRVVQ-----------------SDDRFKFTVL--DDYIIIFIKEI   58 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~   58 (591)
                      |..+.+.+|+++.|.|.+.+.+  .+.+.|+|+  +..+.                 ...|+.+...  .+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (444)
T 1igt_B            7 SGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL   86 (444)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC
Confidence            5678999999999999998764  678999985  32210                 1245555443  34579999999


Q ss_pred             CCCCceEEEEEEEcCCeee---EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCc
Q psy12425         59 RKEDAGDYTVNLSNSSGSV---SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH  135 (591)
Q Consensus        59 ~~~d~g~Y~c~~~n~~g~~---~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~  135 (591)
                      +.+|+|.|.|.+.|..+..   ...+.|.|...+.  ..| .+..        .  ++.                     
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~--~~P-~i~~--------~--~~~---------------------  132 (444)
T 1igt_B           87 KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKT--TAP-SVYP--------L--APV---------------------  132 (444)
T ss_dssp             CGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCC--BCC-EEEE--------E--CCC---------------------
T ss_pred             CHHHCEEEEEEEecCCcccccccCcEEEEecCCCC--CCC-ceeE--------e--ccc---------------------
Confidence            9999999999999876542   2235666653211  111 0000        0  000                     


Q ss_pred             eEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCC
Q psy12425        136 WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLD  215 (591)
Q Consensus       136 ~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~  215 (591)
                                     ..+..+....+.|.+....                    |             ..+.++|.....
T Consensus       133 ---------------~~~~~g~~v~L~C~~~g~~--------------------P-------------~p~~v~W~~~~~  164 (444)
T 1igt_B          133 ---------------CGDTTGSSVTLGCLVKGYF--------------------P-------------EPVTLTWNSGSL  164 (444)
T ss_dssp             ---------------SSCCCSSCEEEEEEEEEEB--------------------S-------------SCCEEEEGGGTB
T ss_pred             ---------------ccCCCCCcEEEEEEEccee--------------------C-------------CCcEEEEecCCC
Confidence                           0012456667778775210                    0             014578876422


Q ss_pred             CCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcC---------
Q psy12425        216 DGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD---------  286 (591)
Q Consensus       216 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~---------  286 (591)
                      ..  .+..+... .  ....+       .....|.|.+....| |.|+|.|.|..|...   ....+.+.+         
T Consensus       165 ~~--~~~~~~~~-~--~~~~~-------~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~---~~~~i~~~~~~~~~~~~~  228 (444)
T 1igt_B          165 SS--GVHTFPAV-L--QSDLY-------TLSSSVTVTSSTWPS-QSITCNVAHPASSTK---VDKKIEPRGPTIKPCPPC  228 (444)
T ss_dssp             CT--TEEECCCE-E--ETTEE-------EEEEEEEECSTTTTT-SCCEEEEEETTTTEE---EEEECCCCCCSCCCCCCC
T ss_pred             CC--CeEecCcc-c--cCCcE-------EEEEEEEEchhhcCC-CeEEEEEEeCCCCcc---eEEEeccCCCCcccCCcc
Confidence            11  01100000 0  00000       012467888888888 999999999877531   111111100         


Q ss_pred             ----CCccCCCeE-Eeeccccc-eeccccEEEEEEEcCCC----CCeeEEecCCccCCCCCceE-EEE-eC---CeEEEE
Q psy12425        287 ----PMAAKAPEI-IVPLRNAN-AIQNHNAQFQCTITGCP----KPTISWLKGSREITPSARHH-IFA-EG---DTYTLI  351 (591)
Q Consensus       287 ----~~~~~~p~~-~~~~~~~~-~~~g~~~~l~c~~~~~p----~~~v~W~~~~~~~~~~~~~~-~~~-~~---~~~~l~  351 (591)
                          .....+|.+ ..++.... +..|+.+.|.|.+.|.+    .+.+.|++++..+....... ... ++   ...+|.
T Consensus       229 ~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~  308 (444)
T 1igt_B          229 KCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALP  308 (444)
T ss_dssp             SCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEE
T ss_pred             ccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEE
Confidence                011235655 33333333 58899999999999873    36999999988775433221 111 11   134799


Q ss_pred             EcceecccceEEEEEEEeCCcceeeeeEE----EEecCCcccCCCCcccceeecCCCeEEEEEeeec-cCCC-eEEEeeC
Q psy12425        352 INSVYGVDADEYVCRAVNKGGVKSTKAEL----IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKP-KITWYRD  425 (591)
Q Consensus       352 i~~~~~~d~g~y~c~a~n~~g~~~~~~~l----~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~-~v~W~~~  425 (591)
                      |.++..+|.|.|+|.|.|..|.......+    .+..+|.+...+..  ...+. +..+.|.|.+.| .|.+ .|.|+++
T Consensus       309 I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~--~~~~~-~~~~~L~C~~~g~~P~~~~v~W~k~  385 (444)
T 1igt_B          309 IQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPP--EEEMT-KKQVTLTCMVTDFMPEDIYVEWTNN  385 (444)
T ss_dssp             CCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCC--GGGTT-SSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             EcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCC--hHHcc-CCeEEEEEEEEeeeCCCCEEEEEEC
Confidence            99999999999999999998876333333    23345554322211  11223 445999999998 4555 8999999


Q ss_pred             CeEeeeccceEEE-ecCC----eeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        426 NEVIESGGHFHVE-TSER----HAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       426 ~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      |..+......... ..+.    .+.|.|.....+|.|.|+|.|.|..-.
T Consensus       386 g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l~  434 (444)
T 1igt_B          386 GKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLH  434 (444)
T ss_dssp             TEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTSG
T ss_pred             CEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCcC
Confidence            9887432111111 1111    234666666667799999999998543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.96  E-value=3.3e-28  Score=232.19  Aligned_cols=345  Identities=20%  Similarity=0.246  Sum_probs=230.0

Q ss_pred             EEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCc-----ccCCcEEEEEEEEcCCCC
Q psy12425        198 VTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNL-----IEGRQYEFRVYAQNEAGL  272 (591)
Q Consensus       198 ~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-----~~~~~~~y~c~a~n~~g~  272 (591)
                      +....|..++|.|..........+.+|. +........-.+  ........+.|.++     +..|.|.|+|.|.+..+.
T Consensus        31 ~~v~~G~~v~L~C~~~~~~p~~~v~W~k-~g~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~  107 (403)
T 3laf_A           31 AVTMRGGNVLLNCSAESDRGVPVIKWKK-DGLILALGMDDR--KQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSG  107 (403)
T ss_dssp             EEECTTCCEEECCEEECTTCCCEEEEEE-TTEECCTTSCTT--EEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGC
T ss_pred             eEEecCCcEEEEEEcCCCCCCceEEEEE-CCEECccCCccc--EEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCc
Confidence            4455688899999875322211223221 111111000000  11123456677766     677999999999965432


Q ss_pred             CCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCC---CCceEEEEeCCeEE
Q psy12425        273 SLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP---SARHHIFAEGDTYT  349 (591)
Q Consensus       273 ~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~  349 (591)
                      .. ......+.+.     .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..   ..+.....++   +
T Consensus       108 ~~-~s~~~~l~v~-----~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~  178 (403)
T 3laf_A          108 SI-ISRTAKVMVA-----GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG---A  178 (403)
T ss_dssp             EE-ECCCEEEEEC-----CCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTS---C
T ss_pred             cE-EEEEEEEEec-----CCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCc---e
Confidence            22 1233445554     467777777778889999999999999999999999999887743   2223222222   7


Q ss_pred             EEEcceecccceEEEEEEEeCCcce-eeeeEEEEecCCcccCCCCc---ccceeecCCCeEEEEEeeeccCCCeEEEeeC
Q psy12425        350 LIINSVYGVDADEYVCRAVNKGGVK-STKAELIIMTAPKFNVPPRF---RDTAYFDKGENVVVKIPFTGYPKPKITWYRD  425 (591)
Q Consensus       350 l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~~~~~~~---~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~  425 (591)
                      |.|.++..+|+|.|+|.|.|..|.. .....+.|...|....++.+   .....+..|+.+.|.|.+.+.|.+.+.|+++
T Consensus       179 L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  258 (403)
T 3laf_A          179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRG  258 (403)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEET
T ss_pred             EEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEEC
Confidence            9999999999999999999988765 45678888777654322111   1334567899999999999999999999999


Q ss_pred             CeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCC---CCCCCeeeeecCCeeEEEe
Q psy12425        426 NEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD---PPQFPTVEDIGHDSLALVW  502 (591)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~---~p~~~~~~~~~~~~v~l~W  502 (591)
                      +..+..........  ....|.|.++..+|.|.|+|.|.|..|..+..+.+.+..+|.   .|....  ...+..+.|.|
T Consensus       259 ~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~--~~~g~~v~l~C  334 (403)
T 3laf_A          259 EEVIQLRSKKYSLL--GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLY--AYESMDIEFEC  334 (403)
T ss_dssp             TEECCCSSSSEEEE--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEE--CCTTCCEEECC
T ss_pred             CeeccCCCceEEEC--CccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceE--EecCCeEEEEE
Confidence            98876543322222  246799999999999999999999999999999998887662   233222  23456788888


Q ss_pred             eccccCCCcceeeEEEEeee---CCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425        503 RAPIWDGGSNITNYIVEKRE---HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP  565 (591)
Q Consensus       503 ~~p~~~~~~~~~~y~v~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~  565 (591)
                      .....    +...+.+....   .........   ....+.|.++...+.+.|+|.|.|..|....
T Consensus       335 ~~~g~----p~p~v~W~~~g~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  393 (403)
T 3laf_A          335 AVSGK----PVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVAENEAGNAQS  393 (403)
T ss_dssp             EEEEE----SCCEEEEEETTEECCCSSSEEEE---TTTEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEeec----cCCEEEEEECCEECCCCCcEEEe---cCccEEEeccccccCEEEEEEEEcCCceEEE
Confidence            75321    11122222110   111111111   2247999999999999999999999997543

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.96  E-value=8.1e-28  Score=218.57  Aligned_cols=275  Identities=15%  Similarity=0.085  Sum_probs=204.4

Q ss_pred             CCceeeeecCCeEEEEEEecc-------CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          1 MPNALYIPEGDNTKVKIFYAG-------DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~-------~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      .|.++.+.+|++++|.|.+.+       .|.+.|.|+|||+.|..+ ++++. .+....|.|.++... .|.|.|.|.+.
T Consensus        10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~-~~~~~~L~i~~~~~~-~g~Y~C~a~~~   86 (303)
T 1i1r_A           10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTII-NRTASSVTFTDIASL-NIQLTCNILTF   86 (303)
T ss_dssp             ESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEE-ETTEEEEEECSCCCS-EEEEEEEEEET
T ss_pred             ccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeee-CCcEEEEEEcCcCCC-ceEEEEecccC
Confidence            378899999999999999985       488999999999998654 44433 344568999999998 49999999875


Q ss_pred             Ceee--EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEc
Q psy12425         74 SGSV--SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQ  151 (591)
Q Consensus        74 ~g~~--~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~  151 (591)
                      .+..  ...+.+.+..+|.+|.. +.+......++.|+|.++...+  .+..|.++++......|...........+.+.
T Consensus        87 g~~~~~~~~~~l~v~~~P~~P~~-l~~~~~~~~~v~l~W~~~~~~~--~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~  163 (303)
T 1i1r_A           87 GQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTSCTVD  163 (303)
T ss_dssp             TTEEEEEEEEEEEEECCCCCCEE-EEEEEETTSCCEEEEECCSCCS--SCCEEEEEEEETTEECCCEECCSSCTTEEECS
T ss_pred             CCcceEEEEEEEeccCCCCCCee-eEEEECCCCcEEEEccCCCCCC--CCcCEEEEEEecCCCCccCCCcCCCceEEEEC
Confidence            2222  34467778888888876 5566666689999999887543  35689999876543333322234456789999


Q ss_pred             CC-cCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEee--cCCeEEEEEecCCCCCCcceEEEEEEe
Q psy12425        152 GL-TEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQV--GGDFVNLSWDKPLDDGGSRIQGYWIDK  228 (591)
Q Consensus       152 ~l-~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~v~l~w~~~~~~~~~~~~~y~~~~  228 (591)
                      +| .+++.|.|+|.|.|..|.+.........   ....+|.+|..+.+...  ..+++.|+|.+|...+ ..+.+|.|++
T Consensus       164 ~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~---~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~-~~i~~Y~v~y  239 (303)
T 1i1r_A          164 YSTVYFVNIEVWVEAENALGKVTSDHINFDP---VYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKS-VIILKYNIQY  239 (303)
T ss_dssp             SCCCTTSCEEEEEEEEETTEEEECCCEEECG---GGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGG-TSCEEEEEEE
T ss_pred             CcCcccccEEEEEEEEcCCCCcccCCEEECH---HHeEecCCCcceEEEEecCCCCEEEEEECCCCCCC-cccEEEEEEE
Confidence            99 8999999999999999986532211111   11135666766666543  5689999999986544 4789999999


Q ss_pred             eecCCCccEEEEee--ecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEc
Q psy12425        229 HEVGSDAWQRVNVA--ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK  285 (591)
Q Consensus       229 ~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~  285 (591)
                      +..+...|..+...  ......+.|.+|.++..|.|+++|.|..|.+.++..+..+.+.
T Consensus       240 ~~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~  298 (303)
T 1i1r_A          240 RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI  298 (303)
T ss_dssp             EETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEE
T ss_pred             EeCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCcccee
Confidence            99887788765432  2345789999999999999999999999988887766655543

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.96  E-value=2.7e-29  Score=232.91  Aligned_cols=182  Identities=20%  Similarity=0.363  Sum_probs=140.2

Q ss_pred             ceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceE-EEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEE
Q psy12425        303 NAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH-IFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI  381 (591)
Q Consensus       303 ~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~  381 (591)
                      .+.+|+.+.|.|.+.|.|.+.+.|++++..+....+.. ........+|.|.++...|+|.|+|.|.|..|.......|.
T Consensus       134 ~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  213 (334)
T 1ry7_B          134 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD  213 (334)
T ss_dssp             EEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEE
T ss_pred             EecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEE
Confidence            36679999999999999999999999998876554331 12223345899999999999999999999999888888888


Q ss_pred             EecCCccc--CCCCcccceeecCCCeEEEEEeeeccCCCeEEEee----CCeEeeeccceE--EEe-------cCCeeEE
Q psy12425        382 IMTAPKFN--VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR----DNEVIESGGHFH--VET-------SERHAIL  446 (591)
Q Consensus       382 v~~~p~~~--~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~----~~~~~~~~~~~~--~~~-------~~~~~~l  446 (591)
                      |...+...  ..........+..|+.+.|.|.+.|.|.|.+.|++    +|..+.......  +..       ......|
T Consensus       214 V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  293 (334)
T 1ry7_B          214 VLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL  293 (334)
T ss_dssp             EECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCE
T ss_pred             EecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEE
Confidence            88643211  11111234567889999999999999999999999    676665433211  111       1123489


Q ss_pred             EEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCC
Q psy12425        447 TIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDP  484 (591)
Q Consensus       447 ~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~  484 (591)
                      .|.++...|+|.|+|.|.|..|.....+.|.|...|.+
T Consensus       294 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  331 (334)
T 1ry7_B          294 SLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE  331 (334)
T ss_dssp             EECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred             EEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence            99999999999999999999999999999999877644

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.96  E-value=3.6e-26  Score=222.02  Aligned_cols=367  Identities=13%  Similarity=0.149  Sum_probs=216.7

Q ss_pred             CceeeeecCCeEEEEEEeccCC--CceEEEEECC--EE---ee--------------cCCceeEEEe--CCeEEEEEccc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKNG--RV---VQ--------------SDDRFKFTVL--DDYIIIFIKEI   58 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~~--~~---~~--------------~~~~~~~~~~--~~~~~l~i~~~   58 (591)
                      |..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..   +.              ...|+.+...  +...+|.|.++
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (475)
T 1iga_A            8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (475)
T ss_pred             CCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCC
Confidence            6789999999999999998764  6789999952  21   10              1234444432  34578999999


Q ss_pred             CCCCceEEEEEEEcCCee------eEEEEEEEEecC-CCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEec
Q psy12425         59 RKEDAGDYTVNLSNSSGS------VSGTFTINITGL-PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI  131 (591)
Q Consensus        59 ~~~d~g~Y~c~~~n~~g~------~~~~~~l~v~~~-p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~  131 (591)
                      +++|+|.|.|.+.|..|.      ....+.|.|... +.+|..    ...          ++                  
T Consensus        88 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i----~~~----------~~------------------  135 (475)
T 1iga_A           88 RPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKV----FPL----------SL------------------  135 (475)
T ss_pred             ChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeE----Eec----------Cc------------------
Confidence            999999999999998752      223356666532 111110    000          00                  


Q ss_pred             CCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEe
Q psy12425        132 SMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWD  211 (591)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~  211 (591)
                                         .....+....+.|.+...                    .|.            ..+.|+|.
T Consensus       136 -------------------~~~~~g~~v~L~C~~~g~--------------------~P~------------~p~~v~W~  164 (475)
T 1iga_A          136 -------------------CSTQPDGNVVIACLVQGF--------------------FPQ------------EPLSVTWS  164 (475)
T ss_pred             -------------------cccCCCCeEEEEEEEeee--------------------cCC------------CceEEEEc
Confidence                               001245566677776511                    000            01467786


Q ss_pred             cCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCC----
Q psy12425        212 KPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP----  287 (591)
Q Consensus       212 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~----  287 (591)
                      ......  .+..+. .........+.       ....|.|......|.|.|+|.|.|..+..    ....+.+..+    
T Consensus       165 ~~~~~~--~~~~~~-~~~~~~~g~~~-------~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~----~~~~v~l~V~~~~~  230 (475)
T 1iga_A          165 ESGQGV--TARNFP-PSQDASGDLYT-------TSSQLTLPATQCLAGKSVTCHVKHYTNPS----QDVTVPCPVPSTPP  230 (475)
T ss_pred             CCCccc--ceEeCC-ceecCCCCcEE-------EEEEEEechhHcCCCceEEEEEEECCCCc----eeeeEecccccCcc
Confidence            521100  010000 00000000110       11357788888889999999999987632    1222221110    


Q ss_pred             -----------CccCCCeE-EeeccccceeccccEEEEEEEcCCCC---CeeEEecCCccCCCCCce-EEEE-eC---Ce
Q psy12425        288 -----------MAAKAPEI-IVPLRNANAIQNHNAQFQCTITGCPK---PTISWLKGSREITPSARH-HIFA-EG---DT  347 (591)
Q Consensus       288 -----------~~~~~p~~-~~~~~~~~~~~g~~~~l~c~~~~~p~---~~v~W~~~~~~~~~~~~~-~~~~-~~---~~  347 (591)
                                 ....+|.+ ...+....+.+|+.+.|.|.+.|.++   +.|.| .+ ..+...... .... ++   ..
T Consensus       231 ~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~~-~~~~~~~~~~~~~~~~g~~~~~  308 (475)
T 1iga_A          231 TPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCYSVS  308 (475)
T ss_pred             cccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-CC-CCcCCccccCceECCCCCEEEE
Confidence                       00024544 33333344689999999999998754   68999 43 333221111 1111 11   12


Q ss_pred             EEEEEcceecccceEEEEEEEeCCcceeeeeEEEE---ecCCcccCCCCcccceeecCCCeEEEEEeeeccCC--CeEEE
Q psy12425        348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII---MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK--PKITW  422 (591)
Q Consensus       348 ~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v---~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~--~~v~W  422 (591)
                      ..|.|.++..+|.|.|+|.|.|..|.......+.+   ..+|.+...+.  ....+..|+.+.|.|.+.|.++  +.|.|
T Consensus       309 ~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~--~~~~v~~g~~~~L~C~~~g~~P~~~~v~W  386 (475)
T 1iga_A          309 SVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPP--PSEELALNELVTLTCLARGFSPKDVLVRW  386 (475)
T ss_pred             EEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECC--ChHHhccCCceEEEEEEeeeECCCCEEEE
Confidence            36999999999999999999999887654445532   44555543222  1122467899999999998633  59999


Q ss_pred             eeCCeEeeeccceEE--Eec----C----CeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        423 YRDNEVIESGGHFHV--ETS----E----RHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       423 ~~~~~~~~~~~~~~~--~~~----~----~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      +++|..+........  ...    +    ..+.|.|.....+|.|.|+|.|.|....
T Consensus       387 ~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          387 LQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             EECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            999998865431111  111    1    1245677777778899999999998654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.96  E-value=4.1e-27  Score=213.75  Aligned_cols=271  Identities=19%  Similarity=0.248  Sum_probs=193.5

Q ss_pred             EeecCCeEEEEEecCCCCCCcceEEEEEEeeecC-CCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCC
Q psy12425        199 TQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG-SDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS  277 (591)
Q Consensus       199 ~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~  277 (591)
                      ....|..++|.|.....+....+.+|.-...... ................|.|.++...|.|.|+|.|.|..|..  ..
T Consensus        13 ~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~--~~   90 (291)
T 1qz1_A           13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ--SE   90 (291)
T ss_dssp             EEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCE--EE
T ss_pred             eEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCe--eE
Confidence            3456788888888753321122222210111111 11111222222345689999999999999999999987642  12


Q ss_pred             CcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCC--ceEEEEeCCeEEEEEcce
Q psy12425        278 ASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTYTLIINSV  355 (591)
Q Consensus       278 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~  355 (591)
                      ....+.+.     .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ++....++   .|.|.++
T Consensus        91 ~~~~l~v~-----~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~  162 (291)
T 1qz1_A           91 ATVNVKIF-----QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGI  162 (291)
T ss_dssp             EEEEEEEE-----CCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTS---CEEETTC
T ss_pred             EEEEEEee-----ccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCC---cEEEccC
Confidence            33444443     46777777777888999999999999999999999999988775433  33332232   6999999


Q ss_pred             ecccceEEEEEEEeCCcce--eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeecc
Q psy12425        356 YGVDADEYVCRAVNKGGVK--STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG  433 (591)
Q Consensus       356 ~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~  433 (591)
                      ..+|+|.|+|.|.|..+..  .....+.|..+|.+...+.. ....+..|+.+.|.|.+.|.|.|.+.|+++|..+....
T Consensus       163 ~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~  241 (291)
T 1qz1_A          163 KKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSI-VNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE  241 (291)
T ss_dssp             CGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSE-EEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC-
T ss_pred             ccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccc-cccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCC
Confidence            9999999999999976543  34567777777776543321 23456889999999999999999999999999887554


Q ss_pred             c--eEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        434 H--FHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       434 ~--~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      .  ..+........|.|.++..+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       242 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          242 EDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             -CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            1  2233344567899999999999999999999999998888888754

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.96  E-value=1.6e-27  Score=225.79  Aligned_cols=327  Identities=13%  Similarity=0.104  Sum_probs=195.2

Q ss_pred             eEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC
Q psy12425        197 VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS  276 (591)
Q Consensus       197 ~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s  276 (591)
                      .+....|..+.|.|.....+.  +...|.............  .........|.|.+++..|.|.|+|.|.|..|...  
T Consensus        57 ~v~V~~G~~v~L~C~v~g~P~--p~i~W~~~~~~l~~~~~~--~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~--  130 (423)
T 3qs7_E           57 AVEVDVSASITLQVLVDAPGN--ISCLWVFKHSSLNCQPHF--DLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT--  130 (423)
T ss_dssp             EEEECSSCCEEEEEECSCCSS--CEEEEEETTEEECCCCBC-------CEEEEEESSCCSSSCSEEEEEEEC--CEEE--
T ss_pred             cEEEecCCcEEEEEEEEcCCC--CeEEEEECCCccCcccee--ccccceEEEEEEeecCcccCEEEEEEEEcCCCcEE--
Confidence            566678999999999854221  222222111111110000  00001123689999999999999999999877532  


Q ss_pred             CCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCC---ceEEEEeCCeEEEEEc
Q psy12425        277 SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA---RHHIFAEGDTYTLIIN  353 (591)
Q Consensus       277 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~l~i~  353 (591)
                       ....+.+.     .+|.+. .........|..+.|.|.+.|.|.|.|.|++++.......   ...+....       .
T Consensus       131 -~~~~l~V~-----~~p~~~-~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~-------~  196 (423)
T 3qs7_E          131 -ILFTVSIR-----NTLLYT-LRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE-------K  196 (423)
T ss_dssp             -EEEEEEEC----------C-EEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECC-------S
T ss_pred             -EEEEEEEe-----cCcccc-ccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccc-------e
Confidence             33445554     233332 1122234567888999999999999999999876542211   00111111       1


Q ss_pred             ceecccceEEEEEEEeCCcceee-eeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeec-cCCCeEEEeeCCeEeee
Q psy12425        354 SVYGVDADEYVCRAVNKGGVKST-KAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKPKITWYRDNEVIES  431 (591)
Q Consensus       354 ~~~~~d~g~y~c~a~n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~  431 (591)
                      -+...|+|.|+|.|.|..|.... ...|.|..+|...  +   ....+.+|+.+.|.|.+.| .|.|.+.|++++..+..
T Consensus       197 ~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~--~---~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~  271 (423)
T 3qs7_E          197 VLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTT--L---PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE  271 (423)
T ss_dssp             EECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSS--T---TEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCG
T ss_pred             EEecccCeEEEEEEEcCCCCcceeeEEEEEecCCccC--C---CceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccc
Confidence            12578999999999999997644 3566666655542  2   2456789999999999998 67899999999987755


Q ss_pred             ccceEEEe------cCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCC---CCCCeeeeecCCeeEEEe
Q psy12425        432 GGHFHVET------SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDP---PQFPTVEDIGHDSLALVW  502 (591)
Q Consensus       432 ~~~~~~~~------~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~---p~~~~~~~~~~~~v~l~W  502 (591)
                      ...+....      ......|.|.++..+|+|.|+|.|.|.   .+..+.|.|..+|..   |....+....+..+.|.|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C  348 (423)
T 3qs7_E          272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV  348 (423)
T ss_dssp             GGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEE
T ss_pred             cceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEE
Confidence            43332111      112457999999999999999999998   677778888776531   211122222345566666


Q ss_pred             eccccCCCcceeeEEEEeeeCCCCceEEecee---------eeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425        503 RAPIWDGGSNITNYIVEKREHPMSSWIRVGNT---------RFTTMAITGLSPGHQYEFRVYAENVYGRSDP  565 (591)
Q Consensus       503 ~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~---------~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~  565 (591)
                      ..              ...+.....|.+.+..         ....+....+...+.+.|+|.|.|.+|....
T Consensus       349 ~~--------------~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~  406 (423)
T 3qs7_E          349 RF--------------KAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK  406 (423)
T ss_dssp             EE--------------EEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEE
T ss_pred             EE--------------EEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEE
Confidence            54              2223333333332110         0112222556778999999999999996543

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.96  E-value=3.7e-27  Score=228.06  Aligned_cols=367  Identities=14%  Similarity=0.202  Sum_probs=211.0

Q ss_pred             CceeeeecCCeEEEEEEeccCC--CceEEEEEC--CE---Eee--------------cCCceeEEEe--CCeEEEEEccc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GR---VVQ--------------SDDRFKFTVL--DDYIIIFIKEI   58 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~---~~~--------------~~~~~~~~~~--~~~~~l~i~~~   58 (591)
                      |..+.+.+|++++|.|.+.+.+  .+.+.|+|+  |.   .+.              ...|+.+...  +...+|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (457)
T 1hzh_H            7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (457)
T ss_dssp             CCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence            5678999999999999998876  778999984  22   110              1245555443  35579999999


Q ss_pred             CCCCceEEEEEEEcCCe------------eeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEE
Q psy12425         59 RKEDAGDYTVNLSNSSG------------SVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVV  126 (591)
Q Consensus        59 ~~~d~g~Y~c~~~n~~g------------~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~  126 (591)
                      +.+|+|.|+|.+.|..|            .......|.|...+..  .| .+..        .  ++.            
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~--~P-~i~~--------~--~~~------------  141 (457)
T 1hzh_H           87 RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTK--GP-SVFP--------L--APS------------  141 (457)
T ss_dssp             CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCB--CC-EEEE--------E--CCC------------
T ss_pred             CcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCC--CC-eEEe--------c--Ccc------------
Confidence            99999999999998865            1223456666542211  11 0000        0  000            


Q ss_pred             EEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeE
Q psy12425        127 ERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFV  206 (591)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v  206 (591)
                                              ..+..+....+.|.+...                    .|.             .+
T Consensus       142 ------------------------~~~~~g~~v~L~C~~~g~--------------------~P~-------------~~  164 (457)
T 1hzh_H          142 ------------------------SKSTSGGTAALGCLVKDY--------------------FPE-------------PV  164 (457)
T ss_dssp             ------------------------SCCCTTCCEEEEEEEESB--------------------BSC-------------CC
T ss_pred             ------------------------ccccCCCcEEEEEEEeEE--------------------eCC-------------Ce
Confidence                                    012355667788877621                    000             14


Q ss_pred             EEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcC
Q psy12425        207 NLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD  286 (591)
Q Consensus       207 ~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~  286 (591)
                      .++|.......  ....+..  .......+.       ....|.|.++...| |.|+|.|.|..+...   ....+.+..
T Consensus       165 ~v~W~k~~~~~--~~~~~~~--~~~~~~~~~-------~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~---~~~~v~~~~  229 (457)
T 1hzh_H          165 TVSWNSGALTS--GVHTFPA--VLQSSGLYS-------LSSVVTVPSSSLGT-QTYICNVNHKPSNTK---VDKKAEPKS  229 (457)
T ss_dssp             EEEETTTTBCT--TEEEEEE--EECTTSCEE-------EEEEEEECSGGGGT-SCCEEEEEEGGGTEE---EEEECCCCC
T ss_pred             EEEEEeCCEec--cceEcCc--eECCCCCEE-------EEEEEEecccccCC-ceEEEEEEeCCCCcc---eeEEecccC
Confidence            57887632111  1111100  001111111       12468899999888 999999999765321   011111110


Q ss_pred             ------------CCccCCCeE-Eeeccccc-eeccccEEEEEEEcCCCCC----eeEEecCCccCCCCCceE-EEEeCCe
Q psy12425        287 ------------PMAAKAPEI-IVPLRNAN-AIQNHNAQFQCTITGCPKP----TISWLKGSREITPSARHH-IFAEGDT  347 (591)
Q Consensus       287 ------------~~~~~~p~~-~~~~~~~~-~~~g~~~~l~c~~~~~p~~----~v~W~~~~~~~~~~~~~~-~~~~~~~  347 (591)
                                  +....+|.+ ..++.... +.+|+.+.|.|.+.|.|.+    .+.|++++..+....... ....++ 
T Consensus       230 ~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g-  308 (457)
T 1hzh_H          230 CDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNS-  308 (457)
T ss_dssp             SCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTS-
T ss_pred             CCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCC-
Confidence                        001124554 33333332 6789999999999997653    999999998775432211 112222 


Q ss_pred             EEEEEcc---eeccc---ceEEEEEEEeCCcceeeeeEEE----EecCCcccCCCCcccceeecCCCeEEEEEeeeccCC
Q psy12425        348 YTLIINS---VYGVD---ADEYVCRAVNKGGVKSTKAELI----IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK  417 (591)
Q Consensus       348 ~~l~i~~---~~~~d---~g~y~c~a~n~~g~~~~~~~l~----v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~  417 (591)
                       .+.+..   +...|   .|.|+|.|.|..+.......+.    +..+|.+...+..  ...+..|+ +.|.|.+.|.++
T Consensus       309 -~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~--~~~~~~~~-~~l~C~~~g~~p  384 (457)
T 1hzh_H          309 -TYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS--RDELTKNQ-VSLTCLVKGFYP  384 (457)
T ss_dssp             -CEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCC--GGGGGSSE-EEEEEEEEEEBS
T ss_pred             -cEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCC--ccccCCCc-EEEEEEEEeEEC
Confidence             222221   23444   9999999998765543333332    2345554432211  11234455 999999999754


Q ss_pred             C--eEEEeeCCeEeeeccceEEEecCC-----eeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        418 P--KITWYRDNEVIESGGHFHVETSER-----HAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       418 ~--~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      +  .|.|+++|..+............+     ...|.|.....+|.|.|+|.|.|.....
T Consensus       385 ~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  444 (457)
T 1hzh_H          385 SDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  444 (457)
T ss_dssp             SCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             CCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCCC
Confidence            4  899999999885432222211111     2345566665678999999999986543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.96  E-value=6.5e-27  Score=213.91  Aligned_cols=272  Identities=24%  Similarity=0.343  Sum_probs=203.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC-CceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.+.|+|+|..+... .++++.. .++...|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus        11 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   90 (305)
T 2nzi_A           11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG   90 (305)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             ccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccc
Confidence            67889999999999999999999999999999998754 4555543 455579999999999999999999999999888


Q ss_pred             EEEEEEecCCCCCCC-----CcceEEecCceEEEEecCCCCCCCcceeeEEEEEEe--cCCCceEEEEeecCcceEEEcC
Q psy12425         80 TFTINITGLPGPPIG-----PLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRD--ISMPHWICISTTCHDTTFIVQG  152 (591)
Q Consensus        80 ~~~l~v~~~p~~p~~-----~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~--~~~~~~~~~~~~~~~~~~~i~~  152 (591)
                      .+.|.|...|.....     +..+....+..+.|.|....    .+...+.+....  .................+.+.+
T Consensus        91 ~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~  166 (305)
T 2nzi_A           91 TASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG----KPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPN  166 (305)
T ss_dssp             EEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEE----ESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETT
T ss_pred             eEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECC----CCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEec
Confidence            888888765543211     12344456778888886422    111122222211  1111222222233556788988


Q ss_pred             -CcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeec
Q psy12425        153 -LTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEV  231 (591)
Q Consensus       153 -l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~  231 (591)
                       +...+.|.|+|.|.|..|........   ...   .+|.+|..+.+....+..+.|+|..|..+++..+..|.+++...
T Consensus       167 ~~~~~d~G~Y~C~a~N~~G~~~~~~~l---~v~---~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~  240 (305)
T 2nzi_A          167 GVERKDAGFYVVCAKNRFGIDQKTVEL---DVA---DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCAT  240 (305)
T ss_dssp             CCCSTTCEEEEEEEEETTEEEEEEEEE---EEE---BCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEET
T ss_pred             CCccCccEEEEEEEEeCCCceeeEEEE---EEe---cCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecC
Confidence             99999999999999998875443221   111   35667777777778899999999998777777899999999998


Q ss_pred             CCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEc
Q psy12425        232 GSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK  285 (591)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~  285 (591)
                      ....|......  ....+.|.+|.+++.|.|+|.|.|..|.+.++..+..++..
T Consensus       241 ~~~~w~~~~~~--~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~~t~  292 (305)
T 2nzi_A          241 TAERWLRVGQA--RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITK  292 (305)
T ss_dssp             TSCCEEEEEEE--SSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCEECC
T ss_pred             CCCccEECccc--cCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCEEcC
Confidence            88899887654  37789999999999999999999999999888766655543

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.96  E-value=4.5e-25  Score=207.79  Aligned_cols=353  Identities=16%  Similarity=0.205  Sum_probs=240.4

Q ss_pred             CCCCCCcceEEecCc-eEEEEecCCCCCCCcceeeEEEEEEecCCC--ceEEEEeecCcceEEEcCCcCCcEEEEEEEEE
Q psy12425         90 GPPIGPLDVSEITKH-TCTLHWNPPKYDGGLKVTHYVVERRDISMP--HWICISTTCHDTTFIVQGLTEGQEYLFHVMAV  166 (591)
Q Consensus        90 ~~p~~~~~~~~~~~~-~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~  166 (591)
                      .+|.+ +.+...... ++.|+|.++..   ..+.+|.+.+......  .+...........+.+.+|.+++.|.|+|+|.
T Consensus         4 ~~P~~-l~~~~~~~~~sv~l~W~~~~~---~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   79 (375)
T 3t1w_A            4 SPPTN-LHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTV   79 (375)
T ss_dssp             CCCEE-EEEEEETTTTEEEEEEECCSC---SSCCEEEEEEEETTCTTSCCEEEEEETTCCEEEECCCCTTCCEEEEEEEE
T ss_pred             CCCCc-cEEEecCCCeEEEEEEeCCCC---CCeeeEEEEEEECCCCCCcceeEEcCCCccEEEEcCCcCCCEEEEEEEEE
Confidence            34444 667777788 99999998762   3688999999886542  23333345577899999999999999999999


Q ss_pred             ccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCC
Q psy12425        167 NENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP  246 (591)
Q Consensus       167 n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~  246 (591)
                      |..|.+.....   ..   ...+| +|..+.+......++.|+|.++.   +..+.+|.|.+...+...+..........
T Consensus        80 ~~~g~s~~~~~---~~---~~~~p-~p~~l~~~~~~~~si~l~W~~~~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~  149 (375)
T 3t1w_A           80 KDDKESVPISD---TI---IPEVP-QLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSV  149 (375)
T ss_dssp             ETTEECCCEEE---EE---CCCCC-CCSCCEEECCCSSEEEEECCCCC---CTTEEEEEEEEEESSSCCSCEEEEECTTC
T ss_pred             cCCCCCCcEEe---eE---cCCCC-CCceEEEEecCCCeEEEEEECCC---CCCceEEEEEEEECCCCCceeEEEcCCCc
Confidence            98876655422   11   12234 36778888888999999999863   34799999999877654433333334466


Q ss_pred             ceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEE
Q psy12425        247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW  326 (591)
Q Consensus       247 ~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W  326 (591)
                      ..+.|.+|.++..|.|++.|.|..|.+..+.    +....  .+.+|.-                |.+...+.....+.|
T Consensus       150 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~----~~~~t--~~~~p~~----------------l~~~~~~~~si~l~W  207 (375)
T 3t1w_A          150 GYYTVTGLEPGIDYDISVITLINGGESAPTT----LTQQT--AVPPPTD----------------LRFTNIGPDTMRVTW  207 (375)
T ss_dssp             CEEEEECCCTTCEEEEEEEEEETTEECCCEE----EEEEC--CCCCCEE----------------EEEESCCSSCEEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEEEEeCCcccCCee----eeeec--CCCCCce----------------eEEEecccCEEEEEE
Confidence            7899999999999999999999988765432    11111  0112211                112212222335667


Q ss_pred             ecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeE
Q psy12425        327 LKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV  406 (591)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~  406 (591)
                      ......  .-..                        |........+.                                 
T Consensus       208 ~~p~~~--~i~~------------------------Y~v~~~~~~~~---------------------------------  228 (375)
T 3t1w_A          208 APPPSI--DLTN------------------------FLVRYSPVKNE---------------------------------  228 (375)
T ss_dssp             ECCSSC--CCCE------------------------EEEEEEEGGGT---------------------------------
T ss_pred             cCCCCC--CccE------------------------EEEEEEeCCCC---------------------------------
Confidence            542100  0001                        11111000000                                 


Q ss_pred             EEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCC
Q psy12425        407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ  486 (591)
Q Consensus       407 ~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~  486 (591)
                                               ..............+.|.+|.+...|.|++.|.|..|.+... .......|.+|.
T Consensus       229 -------------------------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~-~~~~~t~p~~P~  282 (375)
T 3t1w_A          229 -------------------------EDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-RGRQKTGLDSPT  282 (375)
T ss_dssp             -------------------------TCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE-EEEEECCCCCCE
T ss_pred             -------------------------CCcEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCce-eeEEecCCCCCC
Confidence                                     000011222345778899999999999999999998876543 445556888999


Q ss_pred             CCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-CceEE-eceeeeeEEEEcCcccCceEEEEEEEEcCCcCCC
Q psy12425        487 FPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-SSWIR-VGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSD  564 (591)
Q Consensus       487 ~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~-~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~  564 (591)
                      ++.+..++.+++.|+|++|.    ..+.+|.|+++.... ..+.. ........+.|.+|.|++.|.|+|+|.|..|.|+
T Consensus       283 ~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s~  358 (375)
T 3t1w_A          283 GIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESP  358 (375)
T ss_dssp             EEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCCSSCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTEECC
T ss_pred             ccEeeeccCCEEEEEECCCC----cceeeEEEEEEECCCCCcceeEEcCCCccEEEECCCCCCCEEEEEEEEECCCCCCC
Confidence            99998889999999999863    478999999988764 33333 3455667999999999999999999999999998


Q ss_pred             CCC
Q psy12425        565 PST  567 (591)
Q Consensus       565 ~s~  567 (591)
                      +..
T Consensus       359 p~s  361 (375)
T 3t1w_A          359 LLI  361 (375)
T ss_dssp             CEE
T ss_pred             cee
Confidence            764

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=3e-27  Score=228.75  Aligned_cols=368  Identities=12%  Similarity=0.106  Sum_probs=214.3

Q ss_pred             ceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCc--ceEE
Q psy12425        146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGS--RIQG  223 (591)
Q Consensus       146 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~--~~~~  223 (591)
                      ..+.|.++.. +.+ |+|.|.+..+......  .......+......+.  ......|..++|.|.....+...  .+.+
T Consensus        50 ~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~--~l~V~~~P~~~~~~~~--~~~v~~G~~v~L~C~~~g~~~~~~~~v~W  123 (450)
T 1z7z_I           50 KVYELSNVQE-DSQ-PMCYSNCPDGQSTAKT--FLTVYWTPERVELAPL--PSWQPVGKNLTLRCQVEGGAPRANLTVVL  123 (450)
T ss_dssp             EEEEEEEECS-CBC-CEEEEEETTEEEEEEC--EEEEEBCCSEEEECCC--CSEECTTSEEEEEEEEECCBCGGGEEEEE
T ss_pred             eEEEEEeccc-CCe-eEEEEeCCCCcceeEE--EEEEEeCCCcceecCC--CceEeeCCeEEEEEEecCCCCCcCcEEEE
Confidence            3677888877 667 9999975443221111  1111111100000111  12345688999999875433211  1222


Q ss_pred             EEEEeeecCCCccEEEE-eeecCCceeeecCcccCCcEEEEEEEEcCCCCCCC-----CCCcceEEEcCCCccCCCeEEe
Q psy12425        224 YWIDKHEVGSDAWQRVN-VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLP-----SSASNSVQIKDPMAAKAPEIIV  297 (591)
Q Consensus       224 y~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~-----s~~~~~~~~~~~~~~~~p~~~~  297 (591)
                      |     ..+. ...... ........|.|.++..+|.|.|+|.|.|..|....     ......+.+... +..+|.+..
T Consensus       124 ~-----k~g~-~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~-~~~~p~~~~  196 (450)
T 1z7z_I          124 L-----RGEK-ELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL-PATPPQLVS  196 (450)
T ss_dssp             E-----ETTE-EEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCC-CSSCCEEEC
T ss_pred             e-----eCCE-EeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeecc-CCCCCEecC
Confidence            2     1111 000000 00112348999999999999999999998774321     011122222221 123444433


Q ss_pred             eccccceeccccEEEEEEEcCC-C--CCeeEEecCCccCCCCCceEEEEeCCeEEEE-Ecceecccce--EEEEEEEeCC
Q psy12425        298 PLRNANAIQNHNAQFQCTITGC-P--KPTISWLKGSREITPSARHHIFAEGDTYTLI-INSVYGVDAD--EYVCRAVNKG  371 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~-p--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~-i~~~~~~d~g--~y~c~a~n~~  371 (591)
                      +   ..+.+|+.+.|.|.+.|. |  .+.+.|++++..+..  +  +...+....+. ..++..+|+|  .|+|.|.|..
T Consensus       197 ~---~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~--~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~  269 (450)
T 1z7z_I          197 P---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--T--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGN  269 (450)
T ss_dssp             C---SEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--E--EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETT
T ss_pred             c---eeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--e--EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCC
Confidence            2   568899999999999998 7  789999999988765  2  33333332222 2277899999  9999999999


Q ss_pred             cceeeeeEEEEecCC--cccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEe
Q psy12425        372 GVKSTKAELIIMTAP--KFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIR  449 (591)
Q Consensus       372 g~~~~~~~l~v~~~p--~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~  449 (591)
                      |.......|.|...|  .+..     ....+.+|+.+.|.|.+.  |.|.+.|  +|..+..        .+....|.|.
T Consensus       270 g~~~~~~~l~V~~~~~p~i~~-----~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~--------~~~~~~L~i~  332 (450)
T 1z7z_I          270 QSQETLQTVTIYSFPAPNVIL-----TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP--------LGPRAQLLLK  332 (450)
T ss_dssp             EEEEEEEEEEEECCCCCEEEE-----SCSEEETTCEEEEEEEC----------------------------CCCCCEEEE
T ss_pred             ccEEEEEEEEEecCCCCeEec-----CCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCC--------CCceEEEEEe
Confidence            998888889888743  3322     233678999999999998  9999999  6665521        2234589999


Q ss_pred             ccCCCcceeEEEEEEcCCC-c---cceEEEEEecCCCCCCCCC---eeeeecCCeeEEEeeccccCCCcceeeEEEEeee
Q psy12425        450 DASNVDTAPYRVVAENDLG-M---DSAIVKIQISDRPDPPQFP---TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKRE  522 (591)
Q Consensus       450 ~~~~~~~g~y~c~a~n~~g-~---~~~~~~~~v~~~p~~p~~~---~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~  522 (591)
                      .+..+|+|.|+|.|.|..| .   .+..+.|.|..+|......   .+....+..+.|.|....    .+.-.  +.|..
T Consensus       333 ~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g----~P~p~--i~W~~  406 (450)
T 1z7z_I          333 ATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWG----NPLPE--LKCLK  406 (450)
T ss_dssp             CCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEE----ESCCE--EEEEE
T ss_pred             cCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEeccc----CCCCc--EEEEE
Confidence            9999999999999997665 3   3466777887766433222   233345677888887522    12112  22222


Q ss_pred             CCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCC
Q psy12425        523 HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSD  564 (591)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~  564 (591)
                      .+.   .....+  ..+   .+...+.+.|+|.|.|.+|...
T Consensus       407 ~g~---~~~~~g--~~~---~v~~~d~G~Y~C~a~N~~G~~~  440 (450)
T 1z7z_I          407 DGT---FPLPIG--ESV---TVTRDLEGTYLCRARSTQGEVT  440 (450)
T ss_dssp             TTT---EECCTT--SCE---ECCGGGCEEEEEEEEETTEEEE
T ss_pred             CCc---ccCCCC--CeE---eEehhhCeEEEEEEEeCCCcee
Confidence            221   011111  122   4778999999999999999654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.95  E-value=3.9e-28  Score=223.04  Aligned_cols=172  Identities=19%  Similarity=0.302  Sum_probs=129.6

Q ss_pred             eeccccEEEEEEE------cCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEE-eCCcce--
Q psy12425        304 AIQNHNAQFQCTI------TGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV-NKGGVK--  374 (591)
Q Consensus       304 ~~~g~~~~l~c~~------~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~-n~~g~~--  374 (591)
                      +..|+.+.|.|.+      .|.|.+.+.|++++..+...........+   .|.|.++..+|+|.|+|.|. |..|..  
T Consensus       115 ~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~  191 (315)
T 1itb_B          115 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQYP  191 (315)
T ss_dssp             EETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             EecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCc---eEEEEeceehhCcEEEEEEEcCCCCcEEE
Confidence            4556777788877      78888999999999888654433332333   79999999999999999999 787876  


Q ss_pred             -eeeeEEEEe-----cCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceE-----EEec---
Q psy12425        375 -STKAELIIM-----TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH-----VETS---  440 (591)
Q Consensus       375 -~~~~~l~v~-----~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~---  440 (591)
                       .....+.+.     .+|.+..++.  ....+..|+.+.|.|.+.|.|.|.+.|+++|..+.......     ....   
T Consensus       192 ~~~~~~~~~~~~~~~~~P~~~~~~~--~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~  269 (315)
T 1itb_B          192 ITRVIEFITLEENKPTRPVIVSPAN--ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPAN  269 (315)
T ss_dssp             EEEEEEEEEECCCCCCCCEECSCCS--EEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSC
T ss_pred             EEEEEEEEEecCCCCCCCEEecCCC--CcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCC
Confidence             333444443     4455543332  23467899999999999999999999999999887543211     1111   


Q ss_pred             ----CCeeEEEEeccCCCc-ceeEEEEEEcCCCccceEEEEEecC
Q psy12425        441 ----ERHAILTIRDASNVD-TAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       441 ----~~~~~l~i~~~~~~~-~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                          .....|.|.++..+| +|.|+|.|.|..|.....+.|.+..
T Consensus       270 ~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          270 KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             GGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             CceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence                124589999999999 9999999999999999998888753

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=5e-27  Score=223.35  Aligned_cols=348  Identities=14%  Similarity=0.142  Sum_probs=220.1

Q ss_pred             eEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC
Q psy12425        197 VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS  276 (591)
Q Consensus       197 ~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s  276 (591)
                      .+....|..++|.|..........+.+| ..........- .. ........|.|.++...|.|.|+|.|.|..|.....
T Consensus        15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~-k~g~~~~~~~~-~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~   91 (395)
T 1bih_A           15 EVLFRENNPTVLECIIEGNDQGVKYSWK-KDGKSYNWQEH-NA-ALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR   91 (395)
T ss_dssp             EEEEETTSCEEECCCEESCCSSCEEEEE-ESSSBCCTTTT-TE-EECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             ceEEeCCCEEEEEEEEecCCCCceEEEE-ECCcCcccccc-eE-EEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeE
Confidence            3455678889999987541111122222 11111111110 01 112345689999999999999999999987754322


Q ss_pred             CCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEE-cCCCCCeeEEecCCc---cCCC----CCceEEEEeCCeE
Q psy12425        277 SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI-TGCPKPTISWLKGSR---EITP----SARHHIFAEGDTY  348 (591)
Q Consensus       277 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~---~~~~----~~~~~~~~~~~~~  348 (591)
                      ...+.+...     ..|.+  .+....+.+|+.+.|.|.+ .+.|.+.+.|++++.   ....    ..++.+..++   
T Consensus        92 ~~~l~v~~~-----~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~---  161 (395)
T 1bih_A           92 VISFRKTYL-----IASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG---  161 (395)
T ss_dssp             CEEEEEEEE-----ECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS---
T ss_pred             EEEEEEEEe-----ecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCC---
Confidence            222222221     12222  2235667899999999996 788999999999762   1111    2344443333   


Q ss_pred             EEEEcceecccce---EEEEEEEeCCcceeeeeEEEEec---CCcc----cCCCC-cccceeecCCCeEEEEEeeeccCC
Q psy12425        349 TLIINSVYGVDAD---EYVCRAVNKGGVKSTKAELIIMT---APKF----NVPPR-FRDTAYFDKGENVVVKIPFTGYPK  417 (591)
Q Consensus       349 ~l~i~~~~~~d~g---~y~c~a~n~~g~~~~~~~l~v~~---~p~~----~~~~~-~~~~~~~~~g~~~~l~c~~~~~p~  417 (591)
                      +|.|.++..+|.|   .|+|.|.|..|............   .+..    ...|. ......+..|+.+.|.|.+.|.|.
T Consensus       162 ~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~  241 (395)
T 1bih_A          162 NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPM  241 (395)
T ss_dssp             CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSC
T ss_pred             cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCC
Confidence            6999999999999   99999999988765443322211   1100    00111 123456789999999999999999


Q ss_pred             CeEEEeeCCeEeeeccceEEEe--cCCeeEEEEeccCCCcceeEEEEEEcCCCccce-EEEEEecCCCC---CCCCCeee
Q psy12425        418 PKITWYRDNEVIESGGHFHVET--SERHAILTIRDASNVDTAPYRVVAENDLGMDSA-IVKIQISDRPD---PPQFPTVE  491 (591)
Q Consensus       418 ~~v~W~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~-~~~~~v~~~p~---~p~~~~~~  491 (591)
                      +.+.|+++|..+.......+..  ......|.|.++..+|.|.|+|.|.|..|.... .+.|.|..+|.   .|.. .+.
T Consensus       242 ~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~-~~~  320 (395)
T 1bih_A          242 GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEK-VIV  320 (395)
T ss_dssp             CCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCS-EEE
T ss_pred             CeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCc-ceE
Confidence            9999999998886543333322  223458999999999999999999999998755 88888887663   2222 123


Q ss_pred             eecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCC
Q psy12425        492 DIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSD  564 (591)
Q Consensus       492 ~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~  564 (591)
                      ...+..+.|.|........ .+.+|+- ...........    ....|.|.++...+.+.|+|.|.|.+|...
T Consensus       321 ~~~g~~~~l~C~~~g~p~p-~v~W~~~-g~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  387 (395)
T 1bih_A          321 VKQGQDVTIPCKVTGLPAP-NVVWSHN-AKPLSGGRATV----TDSGLVIKGVKNGDKGYYGCRATNEHGDKY  387 (395)
T ss_dssp             ECTTSCEEEECEEEEESCC-CCEEEET-TEECCSSSEEE----ETTEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             ecCCCeEEEEEEECcccCC-eeEEEEC-CEECCCCceEE----ECCEEEEeeCCcccCEEEEEEEEccCCCce
Confidence            3345678888875321111 1222211 11111111111    123899999999999999999999999643

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.95  E-value=7.5e-25  Score=205.81  Aligned_cols=352  Identities=19%  Similarity=0.259  Sum_probs=236.8

Q ss_pred             CCCCCCCcceEEecCc-eEEEEecCCCCCCCcceeeEEEEEEecCCCc---eEEEEeecCcceEEEcCCcCCcEEEEEEE
Q psy12425         89 PGPPIGPLDVSEITKH-TCTLHWNPPKYDGGLKVTHYVVERRDISMPH---WICISTTCHDTTFIVQGLTEGQEYLFHVM  164 (591)
Q Consensus        89 p~~p~~~~~~~~~~~~-~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~~~~y~~~~~  164 (591)
                      |.+|.. +.+...... ++.|+|.++.   +..+..|.|++.......   |... .......+.+.+|.+++.|.|+|.
T Consensus         2 p~~P~~-l~~~~~~~~~sv~l~W~~~~---~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~   76 (368)
T 1fnf_A            2 LSPPTN-LHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEV-VHADQSSCTFDNLSPGLEYNVSVY   76 (368)
T ss_dssp             CCCCEE-EEEEECSSSSCEEEEEECCS---CSSCCEEEEEEEETTTCSSCCEEEE-ECTTCCEEECCCCCTTSCEEEEEE
T ss_pred             CCCCcc-eEEEecCCCcEEEEEEeCCC---CCCceEEEEEEEECCCCCCceeEEE-ecCCcCEEEECCCCCCCEEEEEEE
Confidence            455554 556665555 5999999876   346889999998866533   3332 345678899999999999999999


Q ss_pred             EEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCC-ccEEEEeee
Q psy12425        165 AVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD-AWQRVNVAI  243 (591)
Q Consensus       165 a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~  243 (591)
                      |.|..|.+.....   ...   . .+.+|..+.+......++.|+|.++.   +..+.+|.+.++..... .|..... .
T Consensus        77 a~~~~g~s~~~~~---~~~---~-~~~~p~~l~~~~~~~~si~l~W~~p~---~~~~~~Y~v~~~~~~~~~~~~~~~~-~  145 (368)
T 1fnf_A           77 TVKDDKESVPISD---TII---P-AVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSI-S  145 (368)
T ss_dssp             EEETTEECCCEEE---EEC---C-CCCCCEEEEEESCCSSCEEEEEECCT---TCCCSEEEEEEEETTCTTCCEEEEE-C
T ss_pred             EEcCCCccCceee---eec---C-CCcCCceeEEEEcCCCeEEEEeeCCC---CCCCcEEEEEEEECCCCCccEEEEc-C
Confidence            9999887655321   111   1 22356667777778899999999873   24688999999876543 4555443 3


Q ss_pred             cCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCe
Q psy12425        244 CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT  323 (591)
Q Consensus       244 ~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~  323 (591)
                      .....+.+.+|.++..|.|++.|.|..|.+...    ......  .+.+|.                .|.+.........
T Consensus       146 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~----~~~~~~--~~~~P~----------------~l~~~~~~~~sv~  203 (368)
T 1fnf_A          146 PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL----RGRQKT--GLDSPT----------------GIDFSDITANSFT  203 (368)
T ss_dssp             TTCCEEEECSCCTTCEEEEEEEEEETTEECCCE----EEEEEC--CCCCCE----------------EEEEESCCSSEEE
T ss_pred             CCcceEEecCCCCCCEEEEEEEEEeCCCCCCCe----EeeecC--CCCCCC----------------ccEEEEccCCEEE
Confidence            356789999999999999999999988865421    111111  112222                1122222222335


Q ss_pred             eEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCC
Q psy12425        324 ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKG  403 (591)
Q Consensus       324 v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g  403 (591)
                      +.|......+   ..                        |........+.                             +
T Consensus       204 l~W~~p~~~i---~~------------------------Y~v~~~~~~~~-----------------------------~  227 (368)
T 1fnf_A          204 VHWIAPRATI---TG------------------------YRIRHHPEHFS-----------------------------G  227 (368)
T ss_dssp             EEEECCSSCC---SE------------------------EEEEEECSCCS-----------------------------S
T ss_pred             EEEeCCCCCc---CE------------------------EEEEEecCCCC-----------------------------C
Confidence            6665421110   01                        11111000000                             0


Q ss_pred             CeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCC
Q psy12425        404 ENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD  483 (591)
Q Consensus       404 ~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~  483 (591)
                                                   .............+.|.+|.+...|.|++.|.|..|.+.... .....+|.
T Consensus       228 -----------------------------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~-~~~~t~p~  277 (368)
T 1fnf_A          228 -----------------------------RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI-GQQSTVSD  277 (368)
T ss_dssp             -----------------------------CCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEE-EEEECCCC
T ss_pred             -----------------------------CccEEEeCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCccc-ccccCCCC
Confidence                                         000111223456788899999999999999999998765543 45667889


Q ss_pred             CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCc-eE-EeceeeeeEEEEcCcccCceEEEEEEEEcCCc
Q psy12425        484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS-WI-RVGNTRFTTMAITGLSPGHQYEFRVYAENVYG  561 (591)
Q Consensus       484 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~-~~-~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G  561 (591)
                      +|..+.+...+.+++.|+|++|..    .+.+|.|+++...+.. +. .........+.+.+|.+++.|.|+|+|.|..|
T Consensus       278 ~P~~l~~~~~~~~sv~l~W~~p~~----~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G  353 (368)
T 1fnf_A          278 VPRDLEVVAATPTSLLISWDAPAV----TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRG  353 (368)
T ss_dssp             SCEEEEEEEEETTEEEEEEECCSS----CCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEECCCS
T ss_pred             CCCeeEEEecCCCEEEEEeeCCCC----ccceEEEEEEECCCCCccEEEEcCCCeeEEEecCCCCCCEEEEEEEEeCCCC
Confidence            999999988899999999998742    5889999998765432 22 22344567999999999999999999999999


Q ss_pred             CCCCCCC
Q psy12425        562 RSDPSTT  568 (591)
Q Consensus       562 ~~~~s~~  568 (591)
                      .|+.|..
T Consensus       354 ~g~~s~~  360 (368)
T 1fnf_A          354 DSPASSK  360 (368)
T ss_dssp             SSCCBCC
T ss_pred             cCcccCc
Confidence            9988764

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.95  E-value=2.6e-27  Score=223.33  Aligned_cols=296  Identities=20%  Similarity=0.200  Sum_probs=194.6

Q ss_pred             ceeeecCc-ccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEc-CCCCCee
Q psy12425        247 SQINIPNL-IEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTI  324 (591)
Q Consensus       247 ~~~~i~~l-~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~-~~p~~~v  324 (591)
                      ..+.|.+. ...|.|.|+|.|.|..|........+.+...      ++..........+.+|+.+.|.|... +.|.+.+
T Consensus        62 g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~------~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~  135 (384)
T 3kld_A           62 GSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYL------ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSY  135 (384)
T ss_dssp             TEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEE------CCCSCCCCCCEEEEETCCEEECCCCCSEESCEEE
T ss_pred             CEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecc------cccccCCCCceeEEcCCCeEEecCCCCCCCCeEE
Confidence            45666665 7889999999999998864322222222221      11111122345678999999999764 4567899


Q ss_pred             EEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceee---eeEEEEe-------cCCcccCCCCc
Q psy12425        325 SWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST---KAELIIM-------TAPKFNVPPRF  394 (591)
Q Consensus       325 ~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~---~~~l~v~-------~~p~~~~~~~~  394 (591)
                      .|++++..+....+..+...  ...|.|.++..+|+|.|+|.|.|..|....   ...+.+.       ..|.+...  .
T Consensus       136 ~W~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~--~  211 (384)
T 3kld_A          136 AWIFNEYPSYQDNRRFVSQE--TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQ--F  211 (384)
T ss_dssp             EEEETTEECCCSSSEEECTT--TCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEE--C
T ss_pred             EEEECCCCCEeeccEEEEcC--CCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeec--C
Confidence            99999887654444333222  226999999999999999999998876432   1222222       12222211  1


Q ss_pred             ccceeecCCCeEEEEEeeeccCCCeEEEeeCC-eEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceE
Q psy12425        395 RDTAYFDKGENVVVKIPFTGYPKPKITWYRDN-EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAI  473 (591)
Q Consensus       395 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~  473 (591)
                      .....+..|+.+.|.|.+.|.|.|.+.|++++ ..+....  .  .......|.|.++..+|+|.|+|.|.|..|.....
T Consensus       212 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  287 (384)
T 3kld_A          212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA--R--RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAK  287 (384)
T ss_dssp             CSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTC--E--ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccc--e--ecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence            23455788999999999999999999999954 3443221  1  12345689999999999999999999999999888


Q ss_pred             EEEEecCCCC---CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEee--eC-CCCceEEeceeeeeEEEEcCcccC
Q psy12425        474 VKIQISDRPD---PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKR--EH-PMSSWIRVGNTRFTTMAITGLSPG  547 (591)
Q Consensus       474 ~~~~v~~~p~---~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~--~~-~~~~~~~~~~~~~~~~~i~~l~~~  547 (591)
                      ..+.+..+|.   .+..  .....+..+.|.|.....    +...+.+...  .. ......    .....+.|.++...
T Consensus       288 ~~l~v~~~P~~~~~~~~--~~v~~g~~v~l~C~~~g~----P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~  357 (384)
T 3kld_A          288 GQLTFYAQPNWVQIIND--IHVAMEESVFWECKANGR----PKPTYRWLKNGDPLLTRDRIQ----IEQGTLNITIVNLS  357 (384)
T ss_dssp             EEEEEEEEEEEEECCCC--EEECTTCCEEEECEEEEE----SCCEEEEEETTEECCCBTTEE----EETTEEEESSCCGG
T ss_pred             EEEEEecCCccccCCCc--eEecCCCCEEEEeECCcc----CCCeEEEEECCEECCCCccEE----EeCCEEEEeecChh
Confidence            8888887663   2222  222345678888875321    2112222111  10 011111    12247999999999


Q ss_pred             ceEEEEEEEEcCCcCCCCC
Q psy12425        548 HQYEFRVYAENVYGRSDPS  566 (591)
Q Consensus       548 ~~Y~~~v~A~n~~G~~~~s  566 (591)
                      +.+.|+|.|.|.+|....+
T Consensus       358 D~G~Y~C~A~N~~G~~~~~  376 (384)
T 3kld_A          358 DAGMYQCVAENKHGVIFSS  376 (384)
T ss_dssp             GCEEEEEEEEETTEEEEEE
T ss_pred             hCEEEEEEEEeCCceEEec
Confidence            9999999999999965443

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.95  E-value=1.6e-26  Score=210.97  Aligned_cols=276  Identities=14%  Similarity=0.059  Sum_probs=198.5

Q ss_pred             CceeeeecCCeEEEEEEeccC-----CCceEEEEECCEEeecCCceeEEEeCC-eEEEEEcccCCCCceEEEEEEEcCCe
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD-----QPMEVSLTKNGRVVQSDDRFKFTVLDD-YIIIFIKEIRKEDAGDYTVNLSNSSG   75 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~Y~c~~~n~~g   75 (591)
                      |.+..|..|++++|.|.+.++     |.+.+.|++||..+..+ +......+. ...|+|.+++..|+|.|.|.+.+..+
T Consensus         7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~   85 (313)
T 2d9q_B            7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGG-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSL   85 (313)
T ss_dssp             ESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTC-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSE
T ss_pred             CCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCcc-ceEEEecCeEEEEEEEeccCCCccceEEeeecCCCc
Confidence            678889999999999999987     67899999999988533 222112222 26899999999999999999977666


Q ss_pred             eeEEEEEEEEecCCCCCCCCcceEEe-cCceEEEEecCCCCCCCcceeeEEEEEEecCC------CceEEEEeecCcceE
Q psy12425         76 SVSGTFTINITGLPGPPIGPLDVSEI-TKHTCTLHWNPPKYDGGLKVTHYVVERRDISM------PHWICISTTCHDTTF  148 (591)
Q Consensus        76 ~~~~~~~l~v~~~p~~p~~~~~~~~~-~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~------~~~~~~~~~~~~~~~  148 (591)
                      .....+.|.|..+|.+|.. +..... ...+++++|.++.. ++. ...|.+.++....      ..|..+........+
T Consensus        86 ~~~~~~~l~v~~~P~~P~~-l~c~~~~~~~~~~~~W~~~~~-~~~-~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (313)
T 2d9q_B           86 QILDQVELRAGYPPAIPHN-LSCLMNLTTSSLICQWEPGPE-THL-PTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHC  162 (313)
T ss_dssp             EEEEEEEEEECCCCCCCEE-EEEEEETTTTEEEEEEECCSC-CSS-CCEEEEEEEECCTTSCSCCCCEEEECCCTTCSEE
T ss_pred             eeEEEEEEccCCCCCCCcc-ceeeECCCCccEEEEecCCCC-CCC-ceeEEEEEEecCCCcccCCcccccCCCCCCCcEE
Confidence            5566788888888888776 444544 35799999998774 333 3469998876542      235544332233445


Q ss_pred             EE--cCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEee------cCCeEEEEEecCCCCCCcc
Q psy12425        149 IV--QGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQV------GGDFVNLSWDKPLDDGGSR  220 (591)
Q Consensus       149 ~i--~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------~~~~v~l~w~~~~~~~~~~  220 (591)
                      .+  .+|.++..|.|+|.|.|..|.+..... .  ........|.+|..+.+...      ....+.|+|.+|... +..
T Consensus       163 ~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~-~--~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~-~~~  238 (313)
T 2d9q_B          163 SIPRKHLLLYQNMGIWVQAENALGTSMSPQL-C--LDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPG-LHI  238 (313)
T ss_dssp             EEEGGGCCSSSCEEEEEEEEETTEEEECCCE-E--ECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGGG-TTS
T ss_pred             EECccccccceeEEEEEEEECCCCCccCccE-E--EehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCCC-Cce
Confidence            55  459999999999999999997533221 1  11111234666665555543      357899999997532 334


Q ss_pred             eEEEEEEee-ecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEc
Q psy12425        221 IQGYWIDKH-EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK  285 (591)
Q Consensus       221 ~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~  285 (591)
                      ..+|.|+|+ ..+...|..+.........+.|.+|.++..|.++++|.|..|.+.++..+..+.+.
T Consensus       239 ~l~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~  304 (313)
T 2d9q_B          239 NQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR  304 (313)
T ss_dssp             CEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEEC
T ss_pred             eEEEEEEEccCCCCCCcEEcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCcccee
Confidence            679999999 67777898775544455789999999999999999999998888777666655554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.95  E-value=3.6e-27  Score=219.97  Aligned_cols=170  Identities=18%  Similarity=0.294  Sum_probs=95.5

Q ss_pred             ccccEEEEEEE-----cCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCC-cce---ee
Q psy12425        306 QNHNAQFQCTI-----TGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG-GVK---ST  376 (591)
Q Consensus       306 ~g~~~~l~c~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~-g~~---~~  376 (591)
                      +|+.+.|.|.+     .+.|.+.+.|++++..+....  .+..++  ..|.|.++..+|+|.|+|.|.|.. |..   ..
T Consensus       134 ~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~--~~~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~  209 (349)
T 4dep_C          134 EYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFN--NVIPEG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTR  209 (349)
T ss_dssp             TCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCS--SEEEET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcc--ceeecC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEE
Confidence            34445555553     556778999999998886543  333344  279999999999999999999987 543   45


Q ss_pred             eeEEEEecC------CcccCCCCcccceeecCCCeEEEEEeee----ccCCCeEEEeeCCeEeee-ccceEEEe------
Q psy12425        377 KAELIIMTA------PKFNVPPRFRDTAYFDKGENVVVKIPFT----GYPKPKITWYRDNEVIES-GGHFHVET------  439 (591)
Q Consensus       377 ~~~l~v~~~------p~~~~~~~~~~~~~~~~g~~~~l~c~~~----~~p~~~v~W~~~~~~~~~-~~~~~~~~------  439 (591)
                      ...|.|..+      |.+..++. .....+..|+.+.|.|.+.    +.|.|.+.|+++|..+.. ..++.+..      
T Consensus       210 ~~~l~v~~~~~~~~~p~i~~~~~-~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~  288 (349)
T 4dep_C          210 TLTVKVVGSPKNAVPPVIHSPND-HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSR  288 (349)
T ss_dssp             EEEEEEECCGGGCCSCEEC-----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCT
T ss_pred             EEEEEEEccCCCCCCCeEecCCC-ceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeec
Confidence            566777663      44333221 1112567899999999999    578999999999988765 22222211      


Q ss_pred             cC---CeeEEEEeccCCCcc-eeEEEEEEcCCCccceEEEEEecC
Q psy12425        440 SE---RHAILTIRDASNVDT-APYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       440 ~~---~~~~l~i~~~~~~~~-g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      .+   ....|.|.++..+|. |.|+|.|.|..|.....+.|.+..
T Consensus       289 ~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          289 TEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             TCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred             CCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence            01   144599999999999 999999999999998888888854

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.95  E-value=3.1e-27  Score=225.67  Aligned_cols=299  Identities=19%  Similarity=0.228  Sum_probs=204.5

Q ss_pred             Cceeeec----CcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeE-EeeccccceeccccEEEEEEE-cCC
Q psy12425        246 PSQINIP----NLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEI-IVPLRNANAIQNHNAQFQCTI-TGC  319 (591)
Q Consensus       246 ~~~~~i~----~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~c~~-~~~  319 (591)
                      ...+.|.    ++...|.|.|+|.|.|..|...  +....+.+..     +|.+ ........+.+|+.+.|.|.+ .+.
T Consensus        72 ~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~--s~~~~l~V~~-----~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~  144 (404)
T 3p3y_A           72 SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL--SNRIRLQVSK-----SPLWPKENLDPVVVQEGAPLTLQCNPPPGL  144 (404)
T ss_dssp             SCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEE--EEEEEEEECC-----CCCCCCCCCCCEEEETTSCEEECCCCCCCS
T ss_pred             CceEEEEeccCCCCccCCEEEEEEEEcCCCeEe--eeeEEEEEec-----cCccccCCCCCeEEccCCcEEEEeCCCCCC
Confidence            3445553    7888999999999999877532  1234444442     2222 223344678899999999999 889


Q ss_pred             CCCeeEEecCCccCC-CCCceEEEEeCCeEEEEEcceeccc-ceEEEEEEEeCCcce---eeeeEEEEecCCc-------
Q psy12425        320 PKPTISWLKGSREIT-PSARHHIFAEGDTYTLIINSVYGVD-ADEYVCRAVNKGGVK---STKAELIIMTAPK-------  387 (591)
Q Consensus       320 p~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d-~g~y~c~a~n~~g~~---~~~~~l~v~~~p~-------  387 (591)
                      |.+.+.|++++.... ...++....++   .|.|.++...| .|.|+|.|.|..|..   .....+.+...+.       
T Consensus       145 p~~~v~W~~~~~~~~~~~~~~~~~~~~---~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~  221 (404)
T 3p3y_A          145 PSPVIFWMSSSMEPITQDKRVSQGHNG---DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPS  221 (404)
T ss_dssp             SCCEEEEECTTSCBCCCCSSEEECTTS---CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCC
T ss_pred             CCCeEEEeCCCccccCCCCcEEEcCCC---cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCc
Confidence            999999999875443 33344443333   69999999999 599999999988764   2335566654332       


Q ss_pred             ccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCC
Q psy12425        388 FNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDL  467 (591)
Q Consensus       388 ~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~  467 (591)
                      +..++.......+..|+.+.|.|.+.|.|.+.+.|++++..+..... ..  ......|.|.++..+|+|.|+|.|.|..
T Consensus       222 ~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  298 (404)
T 3p3y_A          222 FMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KF--ENFNKALRITNVSEEDSGEYFCLASNKM  298 (404)
T ss_dssp             BSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTE-EE--EGGGTEEEESSCCGGGCEEEEEEEECSS
T ss_pred             cccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcc-cc--cccCceEEEccCCHhHCEEEEEEEEeCC
Confidence            22222222345578999999999999999999999999988765433 22  2235689999999999999999999999


Q ss_pred             CccceEEEEEecCCCC---CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC----CceEEeceeeeeEEE
Q psy12425        468 GMDSAIVKIQISDRPD---PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM----SSWIRVGNTRFTTMA  540 (591)
Q Consensus       468 g~~~~~~~~~v~~~p~---~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~----~~~~~~~~~~~~~~~  540 (591)
                      |..+..+.|.+..+|.   .|....  ...+..+.|.|.....    +...+.+  ...+.    .............+.
T Consensus       299 g~~~~~~~l~V~~~p~~~~~~~~~~--v~~g~~~~l~C~~~g~----p~p~v~W--~~~g~~~~~~~~~~~~~~~~~~L~  370 (404)
T 3p3y_A          299 GSIRHTISVRVKAAPYWLDEPKNLI--LAPGEDGRLVCRANGN----PKPTVQW--MVNGEPLQSAPPNPNREVAGDTII  370 (404)
T ss_dssp             CEEEEEEEEEEEEEEEEEECCCCEE--ECTTCCEEEECEEEEE----SCCEEEE--EETTEEGGGSCCCTTEEEETTEEE
T ss_pred             CcEEEEEEEEEeCCCeeeccCCcce--eecCCcEEEEEEcccc----CCCceEE--EECCEecCCCCCCceEEecCCEEE
Confidence            9999999999987663   233222  2345678888875321    1112222  21111    000000011234799


Q ss_pred             EcCcccCceEEEEEEEEcCCcCCCC
Q psy12425        541 ITGLSPGHQYEFRVYAENVYGRSDP  565 (591)
Q Consensus       541 i~~l~~~~~Y~~~v~A~n~~G~~~~  565 (591)
                      |.++...+.+.|+|.|.|..|....
T Consensus       371 i~~v~~~d~G~Y~C~a~N~~G~~~~  395 (404)
T 3p3y_A          371 FRDTQISSRAVYQCNTSNEHGYLLA  395 (404)
T ss_dssp             ESSCCSSCCCEEEEEEEETTEEEEE
T ss_pred             EeecCHHHCEEEEEEEEeCCCcEEE
Confidence            9999999999999999999997543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.95  E-value=5e-27  Score=222.70  Aligned_cols=293  Identities=17%  Similarity=0.249  Sum_probs=201.5

Q ss_pred             CCceeeecCcccCC------cEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcC
Q psy12425        245 APSQINIPNLIEGR------QYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITG  318 (591)
Q Consensus       245 ~~~~~~i~~l~~~~------~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~  318 (591)
                      ....|.|.++...|      .|.|+|.|.|..|...  +....+.+.     .+|.+...+....+.+|+.+.|.|.+.+
T Consensus        57 ~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~--s~~~~v~v~-----~~p~~~~~~~~~~v~~G~~v~l~C~~~~  129 (388)
T 2v5m_A           57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII--SRDVHVRAV-----VAQYYEADVNKEHVIRGNSAVIKCLIPS  129 (388)
T ss_dssp             STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEE--CCCEEEEEE-----CCCCCCCBCCCEEEETTSCEEECCBCCT
T ss_pred             CCceEEecccChhhccccccCceEEEEEEccCCeEE--ecceEEEEc-----cccccccCccceeeecCCcEEEEEECcC
Confidence            45689999999887      9999999999887532  223444443     3444445556677899999999999988


Q ss_pred             CCC---CeeEEecCCccCCC-----CCceEEEEeCCeEEEEEcceecccc-eEEEEEEEeCCccee-e---eeEEEEecC
Q psy12425        319 CPK---PTISWLKGSREITP-----SARHHIFAEGDTYTLIINSVYGVDA-DEYVCRAVNKGGVKS-T---KAELIIMTA  385 (591)
Q Consensus       319 ~p~---~~v~W~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~-g~y~c~a~n~~g~~~-~---~~~l~v~~~  385 (591)
                      .+.   +.+.|++++..+..     ..++.+..++   +|.|.+++.+|. |.|+|.|.|..+... .   ...+.|..+
T Consensus       130 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~  206 (388)
T 2v5m_A          130 FVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEP  206 (388)
T ss_dssp             TTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTS---CEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECC
T ss_pred             CCCCCcceEEEEeCCCcccccccCCCCcEEEccCC---cEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecC
Confidence            653   78999998776532     2344443333   699999999999 999999999865432 2   235666654


Q ss_pred             Cccc---CCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEee------eccceEEEecCCeeEEEEeccCCCcc
Q psy12425        386 PKFN---VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIE------SGGHFHVETSERHAILTIRDASNVDT  456 (591)
Q Consensus       386 p~~~---~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~------~~~~~~~~~~~~~~~l~i~~~~~~~~  456 (591)
                      ....   .+........+..|+.+.|.|.+.|.|.+.+.|++++..+.      ...++..    ....|.|.++..+|.
T Consensus       207 ~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~  282 (388)
T 2v5m_A          207 ISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ----VSGTLIIKDAVVEDS  282 (388)
T ss_dssp             CSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE----ETTEEEESSCCGGGC
T ss_pred             CcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceec----ccCEEEECcCCHHHC
Confidence            2211   11111233456789999999999999999999999754321      1122221    245899999999999


Q ss_pred             eeEEEEEEcCCCccceEEEEEecCCCCCCCCC-eeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec---
Q psy12425        457 APYRVVAENDLGMDSAIVKIQISDRPDPPQFP-TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---  532 (591)
Q Consensus       457 g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~-~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~---  532 (591)
                      |.|+|.|.|..|..+..+.|.|..+|.....+ ......+..+.|.|....              .+.....|.+.+   
T Consensus       283 G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g--------------~p~p~i~W~~~g~~i  348 (388)
T 2v5m_A          283 GKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTG--------------NPIKTVSWMKDGKAI  348 (388)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEE--------------ECCCEEEEEETTEEC
T ss_pred             eEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEecc--------------ccCCeEEEEECCEEC
Confidence            99999999999999888889888765321111 122234566777776421              111122222211   


Q ss_pred             eeeeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425        533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP  565 (591)
Q Consensus       533 ~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~  565 (591)
                      ......|.|.++...+.+.|+|.|.|.+|....
T Consensus       349 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  381 (388)
T 2v5m_A          349 GHSESVLRIESVKKEDKGMYQCFVRNDRESAEA  381 (388)
T ss_dssp             SCCSSEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             ccCCCEEEEecCChhhCEEEEEEEEcCCCcEEE
Confidence            123458999999999999999999999996543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.95  E-value=4.3e-26  Score=207.02  Aligned_cols=273  Identities=21%  Similarity=0.260  Sum_probs=184.2

Q ss_pred             CceeeeecCCeEEEEEEeccCC-CceEEEEE-CCEEeecC-CceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ-PMEVSLTK-NGRVVQSD-DRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~-~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      |.++.|.+|+++.|.|.+.+.| .+.+.|+| +|..+... .++.+.. .+...+|.|.+++.+|+|.|+|.+.|..|..
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~   88 (291)
T 1qz1_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   88 (291)
T ss_dssp             SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCE
T ss_pred             CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCe
Confidence            7788999999999999999976 68999999 88877644 4444432 4456799999999999999999999998643


Q ss_pred             -EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCC
Q psy12425         78 -SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEG  156 (591)
Q Consensus        78 -~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  156 (591)
                       +..+.|.|...|.....+....                                                     +..+
T Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~-----------------------------------------------------~~~g  115 (291)
T 1qz1_A           89 SEATVNVKIFQKLMFKNAPTPQE-----------------------------------------------------FKEG  115 (291)
T ss_dssp             EEEEEEEEEECCSEEEECCSSEE-----------------------------------------------------EETT
T ss_pred             eEEEEEEEeeccccccCCCCccc-----------------------------------------------------ccCC
Confidence             5667777765432111111111                                                     1134


Q ss_pred             cEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCcc
Q psy12425        157 QEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAW  236 (591)
Q Consensus       157 ~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~  236 (591)
                      ....+.|.+...                                   ....+.|.........           ..... 
T Consensus       116 ~~v~l~C~~~~~-----------------------------------p~~~v~W~~~~~~~~~-----------~~~~~-  148 (291)
T 1qz1_A          116 EDAVIVCDVVSS-----------------------------------LPPTIIWKHKGRDVIL-----------KKDVR-  148 (291)
T ss_dssp             SCEEECCEEECS-----------------------------------SCCEEEEEETTSCSST-----------TCCTT-
T ss_pred             CeEEEEEEeccC-----------------------------------CCCEEEEEECCEEccc-----------CCCce-
Confidence            444555555310                                   0023567653211000           00000 


Q ss_pred             EEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeec--cccceeccccEEEEE
Q psy12425        237 QRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL--RNANAIQNHNAQFQC  314 (591)
Q Consensus       237 ~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~c  314 (591)
                      .    .......|.|.++...|.|.|+|.|.|..+... ......+.+.     .+|.+....  ....+..|+.+.|.|
T Consensus       149 ~----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~-~~~~~~l~v~-----~~p~~~~~~~~~~~~~~~g~~v~l~C  218 (291)
T 1qz1_A          149 F----IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI-NFKDIQVIVN-----VPPTVQARQSIVNATANLGQSVTLVC  218 (291)
T ss_dssp             E----EECTTSCEEETTCCGGGCEEEEEEEEEGGGTEE-EEEEEEEEEE-----EEEEEEESCSEEEEETTSCCCEEEEE
T ss_pred             E----EEccCCcEEEccCccccCeEEEEEEEecCCCce-eeEEEEEEEe-----cCCcccccccccccccccCceEEEEE
Confidence            0    112345799999999999999999998654321 1122333333     345554432  244678899999999


Q ss_pred             EEcCCCCCeeEEecCCccCCCCCc--eEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEec
Q psy12425        315 TITGCPKPTISWLKGSREITPSAR--HHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT  384 (591)
Q Consensus       315 ~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~  384 (591)
                      .+.|.|.+.+.|++++..+.....  ...........|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       219 ~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          219 DADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             EEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            999999999999999988876541  2222333445899999999999999999999999988888888864

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.95  E-value=2.1e-26  Score=215.76  Aligned_cols=261  Identities=10%  Similarity=0.066  Sum_probs=186.7

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeE
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS  325 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~  325 (591)
                      ...|.|.++...|.|.|+|.|.|..+       ...+.+..        +... ....+.+|+.+.|.|.+.+.|.+.+.
T Consensus        66 ~~~L~I~~v~~~D~G~Y~C~~~n~~~-------~~~l~V~~--------~~~~-~~~~v~~G~~v~l~C~~~~~p~~~v~  129 (363)
T 1wio_A           66 NFPLIIKNLKIEDSDTYICEVEDQKE-------EVQLLVFG--------LTAN-SDTHLLQGQSLTLTLESPPGSSPSVQ  129 (363)
T ss_dssp             CCCEEECSCCGGGCEEEEEEETTEEE-------EEEEEEEE--------EEES-SCSSEESBSCEEEEEECCTTCCCCEE
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCC-------cEEEEEEe--------CCCC-CceEEecCCCEEEEEEcCCCCCCeEE
Confidence            56799999999999999999988643       23333321        1112 22457899999999999999999999


Q ss_pred             EecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCe
Q psy12425        326 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGEN  405 (591)
Q Consensus       326 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~  405 (591)
                      |++++..+       ..   ....|.|.++..+|+|.|+|.|.|..+.......+.|...|...      ....+.+|+.
T Consensus       130 W~~~~~~~-------~~---~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~------~~~~~~~G~~  193 (363)
T 1wio_A          130 CRSPRGKN-------IQ---GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS------SIVYKKEGEQ  193 (363)
T ss_dssp             EECSSSCE-------EE---ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE------EEEEEETBCC
T ss_pred             EEcCCCcc-------cc---cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC------CceEEecCCE
Confidence            99987543       11   12379999999999999999999987777777788887655432      4456788999


Q ss_pred             EEEEEeeec-----cCCCeEEEeeCCeEeee--------ccceEEEe----------cCCeeEEEEeccCCCcceeEEEE
Q psy12425        406 VVVKIPFTG-----YPKPKITWYRDNEVIES--------GGHFHVET----------SERHAILTIRDASNVDTAPYRVV  462 (591)
Q Consensus       406 ~~l~c~~~~-----~p~~~v~W~~~~~~~~~--------~~~~~~~~----------~~~~~~l~i~~~~~~~~g~y~c~  462 (591)
                      +.|.|.+.+     .|.|.+.|+++|..+..        +..+.+..          .+....|.|.++..+|+|.|+|.
T Consensus       194 v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  273 (363)
T 1wio_A          194 VEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT  273 (363)
T ss_dssp             EEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEE
T ss_pred             EEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEE
Confidence            999998877     78899999999987765        34444432          22355999999999999999999


Q ss_pred             EEcC--CCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEE
Q psy12425        463 AEND--LGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA  540 (591)
Q Consensus       463 a~n~--~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~  540 (591)
                      |.|.  .|..+..+.|.|...+            ...+.|.|.....    +.....+.|...+...      .....+.
T Consensus       274 a~n~~~~g~~~~~~~l~V~~v~------------g~~~~l~C~~~g~----p~p~~~i~W~~~~~~~------~~~~~l~  331 (363)
T 1wio_A          274 LALEAKTGKLHQEVNLVVMRAT------------QLQKNLTCEVWGP----TSPKLMLSLKLENKEA------KVSKREK  331 (363)
T ss_dssp             ECBTTTTCCEEEEEEEEEEEEC------------CCSSSEEEEEESS----CCTTCCEEEECSSSSC------SEEESSS
T ss_pred             EEEhhhcCeEEEEEeEEEEEec------------CCCeeEEEEEccc----cCCCccEEEEeCCCce------eeeeeee
Confidence            9999  9988888888887443            3334455543110    0001011111111110      0124567


Q ss_pred             EcCcccCceEEEEEEEEcCC
Q psy12425        541 ITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       541 i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      |.++.+.+.+.|+|.|.|..
T Consensus       332 i~~v~~~d~G~Y~C~a~~~~  351 (363)
T 1wio_A          332 AVWVLNPEAGMWQCLLSDSG  351 (363)
T ss_dssp             EEEESSCCSEEEEEEECSSS
T ss_pred             eeeeccccceeEEEEEecCC
Confidence            78999999999999998643

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.95  E-value=1e-25  Score=204.10  Aligned_cols=255  Identities=16%  Similarity=0.172  Sum_probs=184.2

Q ss_pred             CeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCC
Q psy12425        196 PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLP  275 (591)
Q Consensus       196 ~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~  275 (591)
                      .......|..++|.|....     .+.     |...+...+..    ......|.|.++...|.|.|+|.|.|  |.   
T Consensus        20 ~~~~v~~G~~v~l~C~~~~-----~i~-----W~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~---   80 (290)
T 2o26_X           20 SELIVEAGDTLSLTCIDPD-----FVR-----WTFKTYFNEMV----ENKKNEWIQEKAEATRTGTYTCSNSN--GL---   80 (290)
T ss_dssp             SEEEEETTSCEEEEEECTT-----EEE-----EEEECSSSCEE----EECSSEEEETTCCGGGCEEEEEEESS--SC---
T ss_pred             CeEEEcCCCcEEEEECCCC-----cEE-----EecCCcceeee----cCCCceEEEeccCHHhCeEEEEEeeC--Cc---
Confidence            4556678999999999742     222     22222222111    12338899999999999999999998  43   


Q ss_pred             CCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCC-CeeEE-ecCCccCCCCCceEEEEeCCeEEEEEc
Q psy12425        276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK-PTISW-LKGSREITPSARHHIFAEGDTYTLIIN  353 (591)
Q Consensus       276 s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~-~~v~W-~~~~~~~~~~~~~~~~~~~~~~~l~i~  353 (591)
                       .....+.+..     +|.+........+.+|+.+.|.|.+.+ |. +.+.| .+++..+....++....++   .|.|.
T Consensus        81 -~~~~~l~V~~-----~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~---~L~i~  150 (290)
T 2o26_X           81 -TSSIYVFVRD-----PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKA---GITIK  150 (290)
T ss_dssp             -EEEEEEEEEC-----SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTT---EEEEE
T ss_pred             -cEEEEEEEeC-----CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCC---CEEEe
Confidence             2445555552     333334455677889999999999996 77 89999 5788887766555554443   69999


Q ss_pred             ceecccce-EEEEEEEeCCcce-eeeeEEEEe----cCCcccCCCCcccceeecCCCeEEEEEeeeccCCCe-EEEeeCC
Q psy12425        354 SVYGVDAD-EYVCRAVNKGGVK-STKAELIIM----TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK-ITWYRDN  426 (591)
Q Consensus       354 ~~~~~d~g-~y~c~a~n~~g~~-~~~~~l~v~----~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~-v~W~~~~  426 (591)
                      ++..+|+| .|+|.|.|..+.. +....+.|.    .+|.+...+.   ...+..|+.+.|.|.+.|.|.|. +.|++++
T Consensus       151 ~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~---~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~  227 (290)
T 2o26_X          151 NVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPET---SHLLKKGDTFTVVCTIKDVSTSVNSMWLKMN  227 (290)
T ss_dssp             SCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCS---BCCCCTTCCEEEEEEEEESSTTCEEEEEEES
T ss_pred             cccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCC---cceEecCCcEEEEEEEecCCcceeEEEecCC
Confidence            99999999 9999999986654 335777776    5666654432   23678899999999999999996 9999998


Q ss_pred             eEe----eeccceEEE---ecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        427 EVI----ESGGHFHVE---TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       427 ~~~----~~~~~~~~~---~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      ..+    .......+.   .......|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          228 PQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             SSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             CCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            773    222222222   12346789999999999999999999999999999999988765

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.95  E-value=2.5e-28  Score=234.56  Aligned_cols=366  Identities=12%  Similarity=0.142  Sum_probs=216.0

Q ss_pred             CceeeeecCCeEEEEEEeccCC--CceEEEEECC--EE---e-e-------------cCCceeEEEe--CCeEEEEEccc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKNG--RV---V-Q-------------SDDRFKFTVL--DDYIIIFIKEI   58 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~~--~~---~-~-------------~~~~~~~~~~--~~~~~l~i~~~   58 (591)
                      |.++.+.+|++++|.|.+.+.+  .+.|.|+|++  ..   + .             ...|+.+...  ++..+|.|.++
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (434)
T 1igy_B            6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL   85 (434)
T ss_dssp             CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred             CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence            6788999999999999998864  6789999963  22   1 0             0234443321  23468999999


Q ss_pred             CCCCceEEEEEEEcCCeeeEEEEEEEEecCC-CCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceE
Q psy12425         59 RKEDAGDYTVNLSNSSGSVSGTFTINITGLP-GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI  137 (591)
Q Consensus        59 ~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~~p-~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~  137 (591)
                      +.+|+|.|+|.+.|..+.....+.|.|...+ .+|..  ...            ++.                       
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i--~~~------------~~~-----------------------  128 (434)
T 1igy_B           86 TSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSV--YPL------------APG-----------------------  128 (434)
T ss_dssp             CGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCE--EEE------------CCC-----------------------
T ss_pred             ChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeE--EEc------------CCc-----------------------
Confidence            9999999999999865444445666665421 11110  000            000                       


Q ss_pred             EEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCC
Q psy12425        138 CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG  217 (591)
Q Consensus       138 ~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~  217 (591)
                                   ..+..+....+.|.+....                    |             ..+.+.|.......
T Consensus       129 -------------~~~~~G~~v~L~C~~~g~~--------------------P-------------~p~~v~W~k~~~~~  162 (434)
T 1igy_B          129 -------------SAAQTNSMVTLGCLVKGYF--------------------P-------------EPVTVTWNSGSLSS  162 (434)
T ss_dssp             -------------CCCCCTTEEEEEEEEEEEB--------------------S-------------SCCEEEETTTTBCS
T ss_pred             -------------cccCCCCcEEEEEEEeeec--------------------C-------------CCeEEEEeeCCcCC
Confidence                         0012556677788775210                    0             01457887632111


Q ss_pred             CcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCC-------Ccc
Q psy12425        218 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP-------MAA  290 (591)
Q Consensus       218 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~-------~~~  290 (591)
                        .+..+.  ... ....+.       ....|.|..+...| |.|+|.|.|..|....   ...+.+..+       ...
T Consensus       163 --~~~~~~--~~~-~~~~~~-------~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~---~~~~~~~~~~~~v~~~~~~  226 (434)
T 1igy_B          163 --GVHTFP--AVL-QSDLYT-------LSSSVTVPSSPRPS-ETVTCNVAHPASSTKV---DKKIVPRDCGCKPCICTVP  226 (434)
T ss_dssp             --SEEECC--CEE-CSSCEE-------EEEEEEEETTTTTS-SCCEEEEECTTTTCCE---EEECCCCCCCCCCCCCCCS
T ss_pred             --CeEecC--cee-cCCcEE-------EEEEEEEcchhcCC-CcEEEEEEeCCCCccc---eeeccCCCCCCccccCCCC
Confidence              111000  000 001110       12457888888888 9999999998775321   111111100       001


Q ss_pred             CCCeE-Eeeccccc-eeccccEEEEEEEcCCC----CCeeEEecCCccCCCCCceEEE--EeC---CeEEEEEcceeccc
Q psy12425        291 KAPEI-IVPLRNAN-AIQNHNAQFQCTITGCP----KPTISWLKGSREITPSARHHIF--AEG---DTYTLIINSVYGVD  359 (591)
Q Consensus       291 ~~p~~-~~~~~~~~-~~~g~~~~l~c~~~~~p----~~~v~W~~~~~~~~~~~~~~~~--~~~---~~~~l~i~~~~~~d  359 (591)
                      ..|.+ ..++.... +.+|+.+.|.|.+.|.+    .+.|.|++++..+.........  .++   ....|.|.++..+|
T Consensus       227 ~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  306 (434)
T 1igy_B          227 EVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLN  306 (434)
T ss_dssp             SSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHH
T ss_pred             cCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccC
Confidence            11333 33333222 78999999999999884    4589999998776533211110  111   12368999999999


Q ss_pred             ceEEEEEEEeCCcceeeeeEE----EEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCCeEeeecc
Q psy12425        360 ADEYVCRAVNKGGVKSTKAEL----IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDNEVIESGG  433 (591)
Q Consensus       360 ~g~y~c~a~n~~g~~~~~~~l----~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~  433 (591)
                      .|.|+|.|.|..|.......+    .+..+|.+...+...   ....|..+.|.|.+.|. |. +.|.|+++|..+....
T Consensus       307 ~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~---~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~  383 (434)
T 1igy_B          307 GKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPK---EQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYK  383 (434)
T ss_dssp             TCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCS---SSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCE
T ss_pred             CCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCH---HHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCce
Confidence            999999999998865332222    234455554322211   12356789999999985 43 3899999998874322


Q ss_pred             ceEEEecCC-----eeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        434 HFHVETSER-----HAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       434 ~~~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      ........+     .+.|.|.....+|.|.|+|.|.|....
T Consensus       384 ~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          384 NTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             ECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             eccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence            111111111     245677777777899999999998654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.95  E-value=3.4e-27  Score=219.18  Aligned_cols=169  Identities=19%  Similarity=0.258  Sum_probs=121.4

Q ss_pred             ccccEEEEEE-----EcCCCCCeeEEecCCccCCCCC-ceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcc----ee
Q psy12425        306 QNHNAQFQCT-----ITGCPKPTISWLKGSREITPSA-RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV----KS  375 (591)
Q Consensus       306 ~g~~~~l~c~-----~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~----~~  375 (591)
                      +|+.+.|.|.     +.+.|.+.+.|++++..+.... ++.+..  ....|.|.++..+|+|.|+|.|.|..|.    ..
T Consensus       134 ~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  211 (339)
T 3o4o_C          134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR--GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNIT  211 (339)
T ss_dssp             TTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECT--TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEE
T ss_pred             CCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcC--CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEE
Confidence            3445566666     5666777888998888776553 333322  2237999999999999999999998874    45


Q ss_pred             eeeEEEEecC-----CcccCCCCcccceeecCCCeEEEEEee---eccC-CCeEEEeeCCeEeee---------ccceEE
Q psy12425        376 TKAELIIMTA-----PKFNVPPRFRDTAYFDKGENVVVKIPF---TGYP-KPKITWYRDNEVIES---------GGHFHV  437 (591)
Q Consensus       376 ~~~~l~v~~~-----p~~~~~~~~~~~~~~~~g~~~~l~c~~---~~~p-~~~v~W~~~~~~~~~---------~~~~~~  437 (591)
                      ..+.|.|...     |.+..+   .....+..|+.+.|.|.+   .|.| .+.+.|++++..+..         ...+.+
T Consensus       212 ~~~~l~V~~~~~~~~P~i~~~---~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~  288 (339)
T 3o4o_C          212 RSIELRIKKKKEETIPVIISP---LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY  288 (339)
T ss_dssp             EEEEEEEECCCCCCCCEECCC---SCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEEC
T ss_pred             EEEEEEEEcCCCCCCCEEecC---CceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEe
Confidence            5677777753     343333   234456889999999999   8999 889999999876532         222222


Q ss_pred             EecCC---eeEEEEeccCCCcc-eeEEEEEEcCCCccceEEEEEec
Q psy12425        438 ETSER---HAILTIRDASNVDT-APYRVVAENDLGMDSAIVKIQIS  479 (591)
Q Consensus       438 ~~~~~---~~~l~i~~~~~~~~-g~y~c~a~n~~g~~~~~~~~~v~  479 (591)
                      ...+.   ...|.|.++..+|. |.|+|.|.|..|..+..+.+.+.
T Consensus       289 ~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~  334 (339)
T 3o4o_C          289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH  334 (339)
T ss_dssp             CCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred             cccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence            22222   22799999999997 99999999999998877666543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.95  E-value=1.3e-26  Score=219.32  Aligned_cols=295  Identities=18%  Similarity=0.174  Sum_probs=199.3

Q ss_pred             CceeeecCccc-CCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEE-cCCCCCe
Q psy12425        246 PSQINIPNLIE-GRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI-TGCPKPT  323 (591)
Q Consensus       246 ~~~~~i~~l~~-~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~  323 (591)
                      ...|.|.++.. .|.|.|+|.|.|..|.....  ...+.+...    ++..........+.+|+.+.|.|.+ .+.|.+.
T Consensus        60 ~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~--~~~l~v~~~----~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~  133 (382)
T 1cs6_A           60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSR--EASLRFGFL----QEFSAEERDPVKITEGWGVMFTCSPPPHYPALS  133 (382)
T ss_dssp             TTEEEEESCCHHHHCEEEEEEEEETTEEEECC--CEEEEEEEE----CCCCSSCCCCEEEETTSCEEECCCCCSEESCCE
T ss_pred             CCeEEEecccccccCEEEEEEEEcCCcEEEec--ceEEEeecc----ccccccCCCceEEecCCcEEEEeCCCCCCCCcE
Confidence            45789999886 99999999999987754322  233333211    1111122345668899999999996 4578899


Q ss_pred             eEEecCCccCC--CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee-----eeeEEEEec------CCcccC
Q psy12425        324 ISWLKGSREIT--PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS-----TKAELIIMT------APKFNV  390 (591)
Q Consensus       324 v~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~-----~~~~l~v~~------~p~~~~  390 (591)
                      +.|++++..+.  ...+..+.  .....|.|.++...|+|.|+|.|.|..|...     ....+.+..      +|.+..
T Consensus       134 i~W~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~  211 (382)
T 1cs6_A          134 YRWLLNEFPNFIPADGRRFVS--QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKA  211 (382)
T ss_dssp             EEEEESSTTCBCCCCSSEEEC--TTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEE
T ss_pred             EEEEECCCccccccCceEEEe--cCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceec
Confidence            99999887643  22333222  2223799999999999999999999875432     223444432      233322


Q ss_pred             CCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        391 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       391 ~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      .  ......+..|+.+.|.|.+.+.|.+.+.|++++..+..      ........|.|.++..+|.|.|+|.|.|..|..
T Consensus       212 ~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  283 (382)
T 1cs6_A          212 K--FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS------KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD  283 (382)
T ss_dssp             C--CCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC------CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             c--CCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc------EEecCCcEEEEccCChhhCEEEEEEEEcCCCeE
Confidence            1  12345678999999999999999999999998876532      122356789999999999999999999999999


Q ss_pred             ceEEEEEecCCCC---CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEee--eCCCCceEEeceeeeeEEEEcCcc
Q psy12425        471 SAIVKIQISDRPD---PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKR--EHPMSSWIRVGNTRFTTMAITGLS  545 (591)
Q Consensus       471 ~~~~~~~v~~~p~---~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~--~~~~~~~~~~~~~~~~~~~i~~l~  545 (591)
                      ...+.+.+..+|.   .|...  ....+..+.|.|.....    +...+.+...  .........   .....+.|.++.
T Consensus       284 ~~~~~l~V~~~p~~~~~~~~~--~~~~g~~~~l~C~~~g~----p~p~v~W~~~g~~~~~~~~~~---~~~~~L~i~~v~  354 (382)
T 1cs6_A          284 TYQGRIIIHAQPDWLDVITDT--EADIGSDLRWSCVASGK----PRPAVRWLRDGQPLASQNRIE---VSGGELRFSKLV  354 (382)
T ss_dssp             EEEEEEEEEEEEEEEECCCCE--EEETTCCEEEECEEEEE----SCCEEEEEETTEECCCCSSEE---EETTEEEESSCC
T ss_pred             EEEEEEEEecCCCcccCCCcc--EEcCCCeEEEEEEeeee----cCCEEEEEECCEECCCCceEE---EECCEEEECcCC
Confidence            8888998887663   22222  22346678888875321    1112222211  011111011   123479999999


Q ss_pred             cCceEEEEEEEEcCCcCCCC
Q psy12425        546 PGHQYEFRVYAENVYGRSDP  565 (591)
Q Consensus       546 ~~~~Y~~~v~A~n~~G~~~~  565 (591)
                      ..+.+.|+|.|.|.+|....
T Consensus       355 ~~d~G~Y~C~a~N~~G~~~~  374 (382)
T 1cs6_A          355 LEDSGMYQCVAENKHGTVYA  374 (382)
T ss_dssp             GGGCEEEEEEEEETTEEEEE
T ss_pred             cccCEEEEEEEEeCCCeEEE
Confidence            99999999999999997543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.94  E-value=1.6e-25  Score=190.26  Aligned_cols=191  Identities=24%  Similarity=0.494  Sum_probs=169.9

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ..+|.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+..++...+|.|.++..+|+|.|+|.+.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            35788888888888999999999999999999999999999999888888888888888999999999999999999999


Q ss_pred             CCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEe
Q psy12425        370 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIR  449 (591)
Q Consensus       370 ~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~  449 (591)
                      ..|.......+.|..+|.+...........+..|+.+.|.|.+.+.|.|.+.|++++..+.....+.+........|.|.
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~  164 (197)
T 3lcy_A           85 EVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMK  164 (197)
T ss_dssp             SSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEES
T ss_pred             CCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEc
Confidence            99998888999998887766543334556678899999999999999999999999999988888888877778999999


Q ss_pred             ccCC-CcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        450 DASN-VDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       450 ~~~~-~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      ++.. +|.|.|+|.|.|..|..+..+.|.|.+
T Consensus       165 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          165 NVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             SCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            9995 899999999999999999988888865

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.8e-25  Score=201.29  Aligned_cols=263  Identities=16%  Similarity=0.144  Sum_probs=174.0

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.+    .+.|+|++..+     ......  ...|.|.+++.+|+|.|+|.|.|  |. ...+
T Consensus        19 ~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~-----~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~n--g~-~~~~   84 (290)
T 2o26_X           19 QSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN-----EMVENK--KNEWIQEKAEATRTGTYTCSNSN--GL-TSSI   84 (290)
T ss_dssp             SSEEEEETTSCEEEEEECTT----EEEEEEECSSS-----CEEEEC--SSEEEETTCCGGGCEEEEEEESS--SC-EEEE
T ss_pred             CCeEEEcCCCcEEEEECCCC----cEEEecCCcce-----eeecCC--CceEEEeccCHHhCeEEEEEeeC--Cc-cEEE
Confidence            56788999999999999987    89999999866     111112  25899999999999999999999  44 6778


Q ss_pred             EEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEE
Q psy12425         82 TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLF  161 (591)
Q Consensus        82 ~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~  161 (591)
                      .|.|..+|.+...+.......+                                                     ....+
T Consensus        85 ~l~V~~~~~~~~~~~~~~~~~g-----------------------------------------------------~~v~l  111 (290)
T 2o26_X           85 YVFVRDPAKLFLVGLPLFGKED-----------------------------------------------------SDALV  111 (290)
T ss_dssp             EEEEECSSCCBCCCCCEEEETT-----------------------------------------------------SCEEE
T ss_pred             EEEEeCCCcccccccceEEecC-----------------------------------------------------CeEEE
Confidence            8888865543221111122222                                                     22333


Q ss_pred             EEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEe
Q psy12425        162 HVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV  241 (591)
Q Consensus       162 ~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~  241 (591)
                      .|.+.+      +                             ....+.|...   ++..+.          ..  ...  
T Consensus       112 ~C~~~~------p-----------------------------~~~~v~W~~~---~g~~l~----------~~--~~~--  139 (290)
T 2o26_X          112 RCPLTD------P-----------------------------QVSQYSLIEC---DGKSLP----------TD--LTF--  139 (290)
T ss_dssp             CCCBSC------C-----------------------------SCEEEEEEET---TSCCCC----------TT--CEE--
T ss_pred             eCcCCC------C-----------------------------CCceEEEEeC---CCcCCC----------CC--Cce--
Confidence            333210      0                             0034566321   111110          00  011  


Q ss_pred             eecCCceeeecCcccCCcE-EEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCC
Q psy12425        242 AICAPSQINIPNLIEGRQY-EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP  320 (591)
Q Consensus       242 ~~~~~~~~~i~~l~~~~~~-~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p  320 (591)
                      .......|.|.++...|.| .|+|.|.|..|...  .....+.+... ...+|.+...+....+.+|+.+.|.|.+.|.|
T Consensus       140 ~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~--s~~~~l~V~~~-~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p  216 (290)
T 2o26_X          140 VPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLH--SDKFTLKVREA-IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVS  216 (290)
T ss_dssp             EEETTTEEEEESCCGGGTTCEEEEEEEETTEEEE--CCCEEEEEECC-CCSCCEEECSCSBCCCCTTCCEEEEEEEEESS
T ss_pred             eeCCCCCEEEecccHHHCCCEEEEEEEECCceEE--eEEEEEEEEeC-CCCCCccccCCCcceEecCCcEEEEEEEecCC
Confidence            0112357899999999999 99999999754322  22344444311 23578887777777899999999999999999


Q ss_pred             CCe-eEEecCCccC----CCCCceEEE---EeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCC
Q psy12425        321 KPT-ISWLKGSREI----TPSARHHIF---AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP  386 (591)
Q Consensus       321 ~~~-v~W~~~~~~~----~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p  386 (591)
                      .+. +.|++++..+    .......+.   .......|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|
T Consensus       217 ~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          217 TSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             TTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             cceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            996 9999988773    322222222   11224589999999999999999999999999888888887654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.94  E-value=8.4e-25  Score=198.45  Aligned_cols=264  Identities=17%  Similarity=0.229  Sum_probs=192.9

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEec-CCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+|.+...+.+..+.+|+.+.|.|.+.+.|. .+.|++ ++..+....++.+..++...+|.|.++..+|+|.|+|.|.|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   81 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   81 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence            4678888888888999999999999999885 899999 77777777788888888888999999999999999999999


Q ss_pred             CCcce-eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeec--cceEEEecCCeeEE
Q psy12425        370 KGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG--GHFHVETSERHAIL  446 (591)
Q Consensus       370 ~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l  446 (591)
                      ..|.. .....+.|..+|.+...+   ....+..|+.+.|.|.+.+.|.+.+.|++++..+...  .++.+.   ....|
T Consensus        82 ~~g~~~~~~~~l~v~~~~~~~~~~---~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~~L  155 (291)
T 2wim_A           82 AKGQTQEATVVLEIYQKLTFREVV---SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML---ANNNL  155 (291)
T ss_dssp             SSSCEEEEEEEEEEECCCBCCSCC---CSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEEC---TTSCE
T ss_pred             ccCceEEEEEEEEecCCcceEeCC---CChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEc---cCCCE
Confidence            98876 456778888777665443   3456789999999999999999999999999877642  233322   24579


Q ss_pred             EEeccCCCcceeEEEEEEcCCCcc--ceEEEEEecCCCCCCCCC---eeeeecCCeeEEEeeccccCCCcceeeEEEEee
Q psy12425        447 TIRDASNVDTAPYRVVAENDLGMD--SAIVKIQISDRPDPPQFP---TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKR  521 (591)
Q Consensus       447 ~i~~~~~~~~g~y~c~a~n~~g~~--~~~~~~~v~~~p~~p~~~---~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~  521 (591)
                      .|.++...|.|.|+|.|.|..+..  ...+.+.+..+|......   ......+..+.|.|.....    +...+.+...
T Consensus       156 ~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~----p~p~v~W~~~  231 (291)
T 2wim_A          156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGS----PEPAISWFRN  231 (291)
T ss_dssp             EETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCB----SCCEEEEEET
T ss_pred             EEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecC----CCCeEEEEEC
Confidence            999999999999999999988654  355667776666432221   1222346789999986322    2222322221


Q ss_pred             --eC-CCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCC
Q psy12425        522 --EH-PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST  567 (591)
Q Consensus       522 --~~-~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~  567 (591)
                        .. .......  ......+.|.++...+.+.|+|.|.|.+|....+.
T Consensus       232 g~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~  278 (291)
T 2wim_A          232 GKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQA  278 (291)
T ss_dssp             TEECCCTTTEEE--CSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEE
T ss_pred             CEECcCCccEEE--cCCccEEEEeeCCcccCEEEEEEEEECCCceeeeE
Confidence              11 1111111  11235799999999999999999999999765443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.94  E-value=3.8e-25  Score=187.82  Aligned_cols=190  Identities=34%  Similarity=0.572  Sum_probs=163.8

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCC-CceEEE-EeCCeEEEEEcceecccceEEEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-ARHHIF-AEGDTYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      +.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+. ..++..+|.|.++..+|+|.|+|.|
T Consensus         2 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (197)
T 2j8h_A            2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (197)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred             CCCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEE
Confidence            35788888888889999999999999999999999999999887654 355544 3455679999999999999999999


Q ss_pred             EeCCcceeeeeEEEEecCCcccCCCCcc--cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeE
Q psy12425        368 VNKGGVKSTKAELIIMTAPKFNVPPRFR--DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI  445 (591)
Q Consensus       368 ~n~~g~~~~~~~l~v~~~p~~~~~~~~~--~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  445 (591)
                      .|..|.......|.|..+|.+..++...  ....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+........
T Consensus        82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~  161 (197)
T 2j8h_A           82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS  161 (197)
T ss_dssp             EETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEE
T ss_pred             EECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceE
Confidence            9999998888999998888776554332  23457889999999999999999999999999998778888877778899


Q ss_pred             EEEec-cCCCcceeEEEEEEcCCCccceEEEEEec
Q psy12425        446 LTIRD-ASNVDTAPYRVVAENDLGMDSAIVKIQIS  479 (591)
Q Consensus       446 l~i~~-~~~~~~g~y~c~a~n~~g~~~~~~~~~v~  479 (591)
                      |.|.+ +...|.|.|+|.|.|..|..+..+.|.|.
T Consensus       162 L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            99999 99999999999999999999888888875

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.94  E-value=1.1e-26  Score=212.60  Aligned_cols=226  Identities=18%  Similarity=0.143  Sum_probs=163.0

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEE-cCCCCCee
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI-TGCPKPTI  324 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v  324 (591)
                      ..+|.|.++...|.|.|+|.|.|..+...  .....+.+..   ..++.+...+.......|+.+.|.|.+ .|.|.+.+
T Consensus        73 ~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~--~~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i  147 (308)
T 4fom_A           73 DATITLHNIGFSDSGKYICKAVTFPLGNA--QSSTTVTVLV---EPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHI  147 (308)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEE--EEEEEEEEEB---CCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEE
T ss_pred             ceEEEEccCCHHHCEEEEEEEeeCCCcce--eeeeEEEeee---ccccccccccceeEEcCCceEEEEEEecCCcCCceE
Confidence            35799999999999999999988643221  1223333331   112223334445556678999999985 68999999


Q ss_pred             EEecCCccCCCCCceEEE-EeCCeEEEEEcceecccceEEEEEEEeCCcceee--eeEEEEecCCcccCCCCcccceeec
Q psy12425        325 SWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST--KAELIIMTAPKFNVPPRFRDTAYFD  401 (591)
Q Consensus       325 ~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~--~~~l~v~~~p~~~~~~~~~~~~~~~  401 (591)
                      .|++++..+......... .......|.|.++...|.|.|+|.|.|..|....  ...|.|..+|.+...+.  ....+.
T Consensus       148 ~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~--~~~~~~  225 (308)
T 4fom_A          148 DWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGY--DGNWFV  225 (308)
T ss_dssp             EECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCC--CSCEET
T ss_pred             EEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEccc--ceeeee
Confidence            999998876532111000 0001236999999999999999999998876643  45566677776654332  334557


Q ss_pred             CCCeEEEEEeeeccCCC-eEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        402 KGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       402 ~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      .|+.+.|.|.+.|.|.| .+.|++++..+....     ...+...|.|.++..+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       226 ~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~-----~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~  300 (308)
T 4fom_A          226 GRKGVNLKCNADANPPPFKSVWSRLDGQWPDGL-----LASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISD  300 (308)
T ss_dssp             TCCSCEEECCEEEESCEEEEECCBSSSCCCSSC-----BCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEEC
T ss_pred             ccccEEEEEEEecCCCCcEEEEEECCeECCCcE-----EEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEc
Confidence            78999999999999998 699999987765432     123456778899999999999999999999999999999998


Q ss_pred             CCC
Q psy12425        481 RPD  483 (591)
Q Consensus       481 ~p~  483 (591)
                      +|.
T Consensus       301 ~P~  303 (308)
T 4fom_A          301 PPH  303 (308)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            874

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.94  E-value=8.5e-25  Score=198.21  Aligned_cols=262  Identities=18%  Similarity=0.221  Sum_probs=186.4

Q ss_pred             CeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCC
Q psy12425        196 PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLP  275 (591)
Q Consensus       196 ~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~  275 (591)
                      ..+....|..++|.|....     .+.+|     ..+...+. . ........|.|.++...|.|.|+|.+.|..|..  
T Consensus        12 ~~~~v~~G~~v~L~C~~~~-----~v~W~-----~~~~~~~~-~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--   77 (289)
T 3ejj_X           12 PELVVEPGETVTLRCVSNG-----SVEWD-----GPISPYWT-L-DPESPGSTLTTRNATFKNTGTYRCTELEDPMAG--   77 (289)
T ss_dssp             SEEEECTTCCEEEEEECSS-----CCEEE-----CSCSSSSE-E-CCCSSCCEEEESSCCGGGCEEEEEECCC-------
T ss_pred             ceEEECCCCCEEEEEEeCC-----cEEEc-----cCCCceEE-E-eccCCccEEEEeeeccccCEEEEEEEeccCCcc--
Confidence            3455667889999998742     24433     22222221 1 122345789999999999999999999877642  


Q ss_pred             CCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCe-eEEec-CCccCCCCCceEEEEeCCeEEEEEc
Q psy12425        276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLK-GSREITPSARHHIFAEGDTYTLIIN  353 (591)
Q Consensus       276 s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~-v~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~  353 (591)
                       .....+.+..+   ..+ +...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+....++.+..++   .|.|.
T Consensus        78 -~~~~~l~V~~~---~~~-~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~  149 (289)
T 3ejj_X           78 -STTIHLYVKDP---AHS-WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR---GFIIR  149 (289)
T ss_dssp             -CEEEEEEECCS---SCS-EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTT---EEEES
T ss_pred             -eeEEEEEEeCC---Ccc-eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCC---CEEEe
Confidence             24455555531   112 45555677789999999999999977765 99975 66666666666664444   69999


Q ss_pred             ceecccceEEEEEEE-eCCcceeeeeEEEEe----cCCcccCCCCcccceeecCCCeEEEEEeeec-cCCCeEEEeeCCe
Q psy12425        354 SVYGVDADEYVCRAV-NKGGVKSTKAELIIM----TAPKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKPKITWYRDNE  427 (591)
Q Consensus       354 ~~~~~d~g~y~c~a~-n~~g~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~  427 (591)
                      ++..+|+|.|+|.|. +..+..+....|.|.    .+|.+...+   ....+..|+.+.|.|.+.+ .|.+.+.|++++.
T Consensus       150 ~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~---~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  226 (289)
T 3ejj_X          150 KAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEP---SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDT  226 (289)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEES---SSEECCSSSCEEEEEEEEESSSCCEEEEEETTE
T ss_pred             ecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecC---CceEEEeCCcEEEEEEeCCCCCceEEEEEECCE
Confidence            999999999999999 555566777888887    455554433   2344578999999999998 7999999999998


Q ss_pred             EeeeccceEEEe--cCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        428 VIESGGHFHVET--SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       428 ~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      .+..........  ......|.|.++..+|.|.|+|.|.|..|..+.++.|.+..++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          227 KLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH  283 (289)
T ss_dssp             ECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred             EeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence            876433222111  1136789999999999999999999999999999999887654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.94  E-value=4.2e-25  Score=187.11  Aligned_cols=186  Identities=26%  Similarity=0.468  Sum_probs=160.8

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCC--ceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ++.+...+...+|.|.++...|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            46788888888889999999999999999999999999998887654  5666667778899999999999999999999


Q ss_pred             eCCcceeeeeEEEEe---cCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeE
Q psy12425        369 NKGGVKSTKAELIIM---TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI  445 (591)
Q Consensus       369 n~~g~~~~~~~l~v~---~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  445 (591)
                      |..|.......+.|.   .+|.+...+   ....+..|+.+.|.|.+.|.|.+.+.|++++..+.....+.+...+....
T Consensus        84 n~~~~~~~~~~l~v~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  160 (194)
T 2a38_A           84 NGSGQATSTAELLVKAETAPPNFVQRL---QSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYS  160 (194)
T ss_dssp             ETTEEEEEEEEEEEECCCEEEEEEECC---CCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEE
T ss_pred             cCCceEeEEEEEEEccCCCCCEEEeCC---ccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEE
Confidence            999988888888887   444444333   34567889999999999999999999999999998888888877777889


Q ss_pred             EEEeccCCCcceeEEEEEEcCCCccceEEEEEec
Q psy12425        446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS  479 (591)
Q Consensus       446 l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~  479 (591)
                      |.|.++...|.|.|+|.|.|..|..+..+.|.|+
T Consensus       161 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          161 LLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            9999999999999999999999998888888763

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.94  E-value=9.1e-25  Score=210.71  Aligned_cols=306  Identities=15%  Similarity=0.190  Sum_probs=193.1

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcC-CCCC-e
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITG-CPKP-T  323 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~-~  323 (591)
                      ...|.|.+++..|.|.|+|.|.|..|...  .....+.+..  ...+|.+..........+|+.+.|.|.+.+ .|.+ .
T Consensus        74 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~--~~~~~l~V~~--~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~  149 (438)
T 1qgc_4           74 DFTLTIDPVEADDVATYYCQQSNEVPLTF--GAGTKLDLKR--ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN  149 (438)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSTTCCB--CCCEEEEECC--CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEE
T ss_pred             cEEEEeCCCcCcCCeeEEEEEecCCCccc--cCceeEEecC--CCCCCEEEecCCChhhccCCceEEEEEEccccCCCcE
Confidence            45799999999999999999999776321  1233444432  224677666444444557889999999987 6777 8


Q ss_pred             eEEecCCccCCCCCceE--EEEe--CC---eEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCccc
Q psy12425        324 ISWLKGSREITPSARHH--IFAE--GD---TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD  396 (591)
Q Consensus       324 v~W~~~~~~~~~~~~~~--~~~~--~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~  396 (591)
                      +.|++++..+.......  ....  +.   ...|.|.++..+|+|.|+|.|.|..|.......+.....+.....   ..
T Consensus       150 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~---~~  226 (438)
T 1qgc_4          150 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVE---SG  226 (438)
T ss_dssp             EEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEE---EC
T ss_pred             EEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEec---CC
Confidence            99999998776541111  1111  11   237999999999999999999998877533332221111111111   12


Q ss_pred             ceeecCCCeEEEEEeeeccC--CCeEEEeeC--CeEee-----------------eccceEEEec--CCeeEEEEeccCC
Q psy12425        397 TAYFDKGENVVVKIPFTGYP--KPKITWYRD--NEVIE-----------------SGGHFHVETS--ERHAILTIRDASN  453 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~~  453 (591)
                      ...+..|+.+.|.|.+.|.|  .+.+.|+++  +..+.                 ...++.+...  .....|.|.+++.
T Consensus       227 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  306 (438)
T 1qgc_4          227 GGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRS  306 (438)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCCh
Confidence            34578999999999999998  679999996  54332                 1234444432  3467899999999


Q ss_pred             CcceeEEEEEEcCCC-----ccceEEEEEecCCC-CCCCCCee----eeecCCeeEEEeeccccCCCcceeeEEEEeeeC
Q psy12425        454 VDTAPYRVVAENDLG-----MDSAIVKIQISDRP-DPPQFPTV----EDIGHDSLALVWRAPIWDGGSNITNYIVEKREH  523 (591)
Q Consensus       454 ~~~g~y~c~a~n~~g-----~~~~~~~~~v~~~p-~~p~~~~~----~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~  523 (591)
                      +|+|.|+|.|.|..|     .......+.|...+ .+|.....    ....+..++|.|.....   .+.. ..+.|...
T Consensus       307 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~---~P~~-~~v~W~~~  382 (438)
T 1qgc_4          307 ADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGY---FPEP-VTVTWNSG  382 (438)
T ss_dssp             GGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESC---BSSC-CEEEEGGG
T ss_pred             hhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccc---cCCC-cEEEEecC
Confidence            999999999999554     22244566665422 23321111    11346788999986321   1111 12333322


Q ss_pred             CCCce------EEece--eeeeEEEEcCcccCceEEEEEEEEcCCcCC
Q psy12425        524 PMSSW------IRVGN--TRFTTMAITGLSPGHQYEFRVYAENVYGRS  563 (591)
Q Consensus       524 ~~~~~------~~~~~--~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~  563 (591)
                      +...-      ....+  .....+.|.+....+ +.|+|.|.|.+|..
T Consensus       383 g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~  429 (438)
T 1qgc_4          383 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  429 (438)
T ss_dssp             TCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTE
T ss_pred             CCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCc
Confidence            21110      00111  112357888888777 99999999999953

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.94  E-value=2.4e-24  Score=195.67  Aligned_cols=254  Identities=17%  Similarity=0.236  Sum_probs=184.8

Q ss_pred             eeccccceeccccEEEEEEEcC-------CCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        297 VPLRNANAIQNHNAQFQCTITG-------CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~-------~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ..+.+..+..|+.+.|.|.+.+       .|.+.|.|.+++..+... ++.+. ++....|.|.++...+ |.|+|.|.+
T Consensus         9 i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~-~~~~~~L~i~~~~~~~-g~Y~C~a~~   85 (303)
T 1i1r_A            9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTII-NRTASSVTFTDIASLN-IQLTCNILT   85 (303)
T ss_dssp             EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEE-ETTEEEEEECSCCCSE-EEEEEEEEE
T ss_pred             EccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeee-CCcEEEEEEcCcCCCc-eEEEEeccc
Confidence            3446677889999999999985       588999999999887543 44433 4446689999999884 999999988


Q ss_pred             CCcce--eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEe--------
Q psy12425        370 KGGVK--STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET--------  439 (591)
Q Consensus       370 ~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--------  439 (591)
                      ..+..  .....+.+..+|                +....|.|...+.....+.|........ ...|.+..        
T Consensus        86 ~g~~~~~~~~~~l~v~~~P----------------~~P~~l~~~~~~~~~v~l~W~~~~~~~~-~~~Y~v~~~~~~~~~~  148 (303)
T 1i1r_A           86 FGQLEQNVYGITIISGLPP----------------EKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFA  148 (303)
T ss_dssp             TTTEEEEEEEEEEEEECCC----------------CCCEEEEEEEETTSCCEEEEECCSCCSS-CCEEEEEEEETTEECC
T ss_pred             CCCcceEEEEEEEeccCCC----------------CCCeeeEEEECCCCcEEEEccCCCCCCC-CcCEEEEEEecCCCCc
Confidence            42222  223444444443                2334567777666677778865422111 11232221        


Q ss_pred             -----cCCeeEEEEecc-CCCcceeEEEEEEcCCCccc-eEEEEEec--CCCCCCCCCeeeee--cCCeeEEEeeccccC
Q psy12425        440 -----SERHAILTIRDA-SNVDTAPYRVVAENDLGMDS-AIVKIQIS--DRPDPPQFPTVEDI--GHDSLALVWRAPIWD  508 (591)
Q Consensus       440 -----~~~~~~l~i~~~-~~~~~g~y~c~a~n~~g~~~-~~~~~~v~--~~p~~p~~~~~~~~--~~~~v~l~W~~p~~~  508 (591)
                           ......+.|.++ .+...|.|+|.|.|..|... ....+...  .+|.+|..+.+...  +.+++.|+|++|...
T Consensus       149 ~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~  228 (303)
T 1i1r_A          149 DCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIK  228 (303)
T ss_dssp             CEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGG
T ss_pred             cCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCC
Confidence                 223467899999 89999999999999999873 23333322  47889988887654  678999999988765


Q ss_pred             CCcceeeEEEEeeeCCCCceEEec----eeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcce
Q psy12425        509 GGSNITNYIVEKREHPMSSWIRVG----NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDL  571 (591)
Q Consensus       509 ~~~~~~~y~v~~~~~~~~~~~~~~----~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~  571 (591)
                      ++ .+.+|+|+|+......|..+.    ......+.|.+|.+++.|.|+|+|.|.+|.|.+|..+..
T Consensus       229 ~~-~i~~Y~v~y~~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~  294 (303)
T 1i1r_A          229 SV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEE  294 (303)
T ss_dssp             GT-SCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCC
T ss_pred             Cc-ccEEEEEEEEeCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCc
Confidence            54 899999999988878898763    445678999999999999999999999999988876653

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.94  E-value=2.9e-25  Score=202.58  Aligned_cols=263  Identities=18%  Similarity=0.308  Sum_probs=177.1

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEE--EeCCeEEEEEcceec-ccceEEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF--AEGDTYTLIINSVYG-VDADEYVCR  366 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~-~d~g~y~c~  366 (591)
                      ..+|.+...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+... ++.+.  .++....|.|.++.. .|+|.|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence            46888988888899999999999999999999999999999887543 34333  233457899999998 999999999


Q ss_pred             EEeCCcceeeeeEEEEecCCc-------ccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccc-eEEE
Q psy12425        367 AVNKGGVKSTKAELIIMTAPK-------FNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH-FHVE  438 (591)
Q Consensus       367 a~n~~g~~~~~~~l~v~~~p~-------~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~-~~~~  438 (591)
                      |.|..|.....+.|.|...+.       +...+   ....+..|+.+.|.|.+.|.|.+.+.|++++..+..... ..+.
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~---~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~  159 (304)
T 2yd9_A           83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP---QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK  159 (304)
T ss_dssp             EECSSCEECCEEEEEEECGGGCCTTCCEEEECC---CCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEE
T ss_pred             EECCCCeEEEEEEEEEeccccCCCCCCeeecCC---ccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEE
Confidence            999999988888999987633       22222   335578899999999999999999999999988865432 1222


Q ss_pred             ecCCeeEEEEeccCCCcceeEEEEEEcCCCccceE-EEEEecCCCCCCCCC----eeeeecCCeeEEEeeccccCCCcce
Q psy12425        439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAI-VKIQISDRPDPPQFP----TVEDIGHDSLALVWRAPIWDGGSNI  513 (591)
Q Consensus       439 ~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~-~~~~v~~~p~~p~~~----~~~~~~~~~v~l~W~~p~~~~~~~~  513 (591)
                      . .....|.|.++...|.|.|+|.|.|..|..... ..+.+.....+|...    ......+..+.|.|.....    +.
T Consensus       160 ~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~----p~  234 (304)
T 2yd9_A          160 Q-LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGS----PM  234 (304)
T ss_dssp             E-CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEE----SC
T ss_pred             e-CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeee----CC
Confidence            2 234589999999999999999999999876432 445543322222110    0112345678888875321    11


Q ss_pred             eeEEEEeeeCCCC-ceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425        514 TNYIVEKREHPMS-SWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP  565 (591)
Q Consensus       514 ~~y~v~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~  565 (591)
                      ..+  .|...+.. ............+.+.++  .+.+.|+|.|.|.+|....
T Consensus       235 p~v--~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~  283 (304)
T 2yd9_A          235 PYV--KWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEA  283 (304)
T ss_dssp             CEE--EEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEE
T ss_pred             CEE--EEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEE
Confidence            122  22211100 000001122345777776  4679999999999997543

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.94  E-value=8.3e-25  Score=194.95  Aligned_cols=151  Identities=13%  Similarity=0.202  Sum_probs=112.4

Q ss_pred             eeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCC-ccee---eeeE
Q psy12425        304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG-GVKS---TKAE  379 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~-g~~~---~~~~  379 (591)
                      +.+|+.+.|.|.+.  |.+.+.|  ++..+...        +....|.|..+..+|.|.|+|.|.|.. |...   ....
T Consensus       110 v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~--------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~  177 (265)
T 2oz4_A          110 VSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE  177 (265)
T ss_dssp             EETTCEEEEEEECC--TTSEEEE--SSCSSSCC--------SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEE
T ss_pred             ecCCCcEEEEEEcc--CCCEEEE--CCEEccCC--------CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEE
Confidence            34566677777776  6777888  55555221        123468889999999999999998544 6654   6678


Q ss_pred             EEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeE
Q psy12425        380 LIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPY  459 (591)
Q Consensus       380 l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y  459 (591)
                      |.|..+|.+..... .....+.+|+.+.|.|.+.|.|.|.+.|++++..+....           .  +..+..+|+|.|
T Consensus       178 l~V~~~p~~~~~~~-p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g-----------~--~~~v~~~d~G~Y  243 (265)
T 2oz4_A          178 LRVLYGPRLDERDC-PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-----------E--SVTVTRDLEGTY  243 (265)
T ss_dssp             EEEEEEEECCGGGS-CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-----------S--CEECCGGGCEEE
T ss_pred             EEEEeCCccccccC-CCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCC-----------c--EEEeehhhCeEE
Confidence            88988887643321 234567889999999999999999999999987322111           1  123778999999


Q ss_pred             EEEEEcCCCccceEEEEEecC
Q psy12425        460 RVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       460 ~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      +|.|.|..|..+..+.|.|..
T Consensus       244 ~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          244 LCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEEEEEec
Confidence            999999999999999998865

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.94  E-value=1.8e-24  Score=192.97  Aligned_cols=155  Identities=15%  Similarity=0.192  Sum_probs=119.2

Q ss_pred             eeccccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        304 AIQNHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       304 ~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      +.+|+.+.|.|.+ .+.|.+.+.|++++..+..      ..  ....|.|.++..+|.|.|+|.|.|..+..+....|.|
T Consensus        94 ~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~------~~--~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V  165 (262)
T 3rjd_A           94 FTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF------FH--WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTV  165 (262)
T ss_dssp             EETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE------EE--ECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEE
T ss_pred             EecCCeEEEEEEccCCCCCceEEEEECCccccc------cC--CCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEe
Confidence            4567788999999 7788889999998876531      11  1236999999999999999999999988888888888


Q ss_pred             ecC---CcccCCCCcccceeecCCCeEEEEEeeeccCC-C----eEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCC
Q psy12425        383 MTA---PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK-P----KITWYRDNEVIESGGHFHVETSERHAILTIRDASNV  454 (591)
Q Consensus       383 ~~~---p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~-~----~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  454 (591)
                      ...   |.+...+    ...+..|+.+.|.|.+.+.|. +    .+.|++++..+...        .....|.|.++..+
T Consensus       166 ~~~~~~p~~~~~~----~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~--------~~~~~L~i~~v~~~  233 (262)
T 3rjd_A          166 KELFPAPVLNASV----TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR--------NTSSEYQILTARRE  233 (262)
T ss_dssp             ECSSCCCEEEESS----CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE--------ESCCEEEESSCCGG
T ss_pred             ccCCCCCeEeecC----ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc--------CCCceEEEEEechh
Confidence            863   3333322    234678999999999999886 5    37888998876421        35678999999999


Q ss_pred             cceeEEEEEEcCCCcc---ceEEEEEe
Q psy12425        455 DTAPYRVVAENDLGMD---SAIVKIQI  478 (591)
Q Consensus       455 ~~g~y~c~a~n~~g~~---~~~~~~~v  478 (591)
                      |.|.|+|.|.|..|..   +..+.+.|
T Consensus       234 d~G~Y~C~a~n~~G~~~~~s~~~~l~V  260 (262)
T 3rjd_A          234 DSGLYWCEAATEDGNVLKRSPELELQV  260 (262)
T ss_dssp             GCEEEEEEEEETTSSCEEECCCEEECE
T ss_pred             hCeEEEEEEEcccCceEEecCCeEEEE
Confidence            9999999999999975   33444444

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.94  E-value=7.7e-25  Score=188.35  Aligned_cols=176  Identities=24%  Similarity=0.376  Sum_probs=153.3

Q ss_pred             eeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeec--cceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        398 AYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG--GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       398 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      ..+..|+.+.|.|.+.|.|.|.+.|+++|..+...  .++.+........|.|.++...|.|.|+|.|.|..|..+..+.
T Consensus        28 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  107 (215)
T 3mtr_A           28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFI  107 (215)
T ss_dssp             EEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEE
Confidence            56788999999999999999999999999988765  4566666667899999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEece-----eeeeEEEEcCcccCceE
Q psy12425        476 IQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGN-----TRFTTMAITGLSPGHQY  550 (591)
Q Consensus       476 ~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~-----~~~~~~~i~~l~~~~~Y  550 (591)
                      +.+..+|.+|..+.+. ....++.|+|.+|..+++.++..|.++|+..+...|.....     .....+.|.+|.+++.|
T Consensus       108 l~v~~~P~~p~~~~~~-~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y  186 (215)
T 3mtr_A          108 LVQADTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTY  186 (215)
T ss_dssp             EEECCCCCCCEEEEEE-EETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEE
T ss_pred             EEECCCCCCCcceEEE-EecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEE
Confidence            9999999999877774 56788999999888788889999999999988888876521     22378999999999999


Q ss_pred             EEEEEEEcCCcCCCCCCCcceEEec
Q psy12425        551 EFRVYAENVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       551 ~~~v~A~n~~G~~~~s~~~~~~~t~  575 (591)
                      .|+|+|.|.+|.|++|..+.+ +|+
T Consensus       187 ~~~~~A~N~~G~s~~S~~~~v-~T~  210 (215)
T 3mtr_A          187 AVRLAALNGKGLGEISAASEF-KTQ  210 (215)
T ss_dssp             EEEEEEEESSCBCCCCCCEEE-ECC
T ss_pred             EEEEEEEeCCcccCcccceee-Eec
Confidence            999999999999999987654 444

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.93  E-value=1.2e-22  Score=191.96  Aligned_cols=440  Identities=13%  Similarity=0.041  Sum_probs=259.1

Q ss_pred             cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCC
Q psy12425         96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPL  175 (591)
Q Consensus        96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~  175 (591)
                      ++.....-....++|..|...+.  -..|.+-......    .+. ......+.|..+.+++ +.+.+......      
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~------   75 (488)
T 2q7n_A           10 LKCTTNNMRVWDCTWPAPLGVSP--GTVKDICIKDRFH----SCH-PLETTNVKIPALSPGD-HEVTINYLNGF------   75 (488)
T ss_dssp             CCCEESSSSEEEEECCCCSSSCC--SCEEEEEEESSSE----EEE-ECSSSEEEEECCCSSC-EEEEEEESSSC------
T ss_pred             ceeEecCceEEEEeeeCcCccCC--CceEEEEEecCCc----eeE-EeccceeEcccCCCCc-ceEEEeeccCc------
Confidence            34444455567899998773322  2346654433221    111 2467788999999988 46666533221      


Q ss_pred             CccCcccccCCCCCCCCCCCCeEEee-cCCeEEEEEecCCCC-CCcceEEEEEEeeecCC--CccEEEEee-ecCC-c--
Q psy12425        176 EGINPIKAKSPYDKPSPPGIPVVTQV-GGDFVNLSWDKPLDD-GGSRIQGYWIDKHEVGS--DAWQRVNVA-ICAP-S--  247 (591)
Q Consensus       176 ~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~v~l~w~~~~~~-~~~~~~~y~~~~~~~~~--~~~~~~~~~-~~~~-~--  247 (591)
                      .....+..+.....|.+|..+.+... ....+.|+|..+... .......|.|.+.....  ..|...-.. .... .  
T Consensus        76 ~~~~~~~~~~~~~~p~~p~~l~~~~~~~~~~l~~~W~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~  155 (488)
T 2q7n_A           76 QSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQ  155 (488)
T ss_dssp             EEEEEECSTTCEECCCCCCEEECCEETTTTEEEEEECBCGGGSCSSEEEEEEEECCCSSSSCSCCCEECCEECSSSCBCC
T ss_pred             eeEEEEecCccccCCCCCeeEEEEEecCCCeEEEEEeCCCccccccCCeEEEEEEEEeccceEEEEEEEEEEecCCCcee
Confidence            11111222222235778877776666 478899999875432 11223568877544322  223331111 0011 0  


Q ss_pred             eee---ecCcccCCcEEEEEEEEc----CCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCC
Q psy12425        248 QIN---IPNLIEGRQYEFRVYAQN----EAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP  320 (591)
Q Consensus       248 ~~~---i~~l~~~~~~~y~c~a~n----~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p  320 (591)
                      ...   ...| ....|.+++++..    ..|.+.+|.-+...++...   .+..+...+.+..+..|++++|.|.+.   
T Consensus       156 ~w~w~s~~pl-~c~~~~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~---~~t~i~v~P~~~~v~~Gs~vtl~C~a~---  228 (488)
T 2q7n_A          156 HWNWTSDLPL-QCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWI---RNTETNVFPQDKVVLAGSNMTICCMSP---  228 (488)
T ss_dssp             EEEEECSSCC-SSSCCEEEEEEEECCTTCCSCBCCCCCCCCEECCCC---CCSSCCEECTTCEEESSCCCEEEECCS---
T ss_pred             EeeccCCCcc-cccceEEEEEEEeccccccCCCCCcCCCChhhcCCc---CCCceEECCCCCEEcCCCCEEEEEECC---
Confidence            111   1122 3667888888885    3456667766666555421   344555666777789999999999998   


Q ss_pred             CCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceee
Q psy12425        321 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYF  400 (591)
Q Consensus       321 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~  400 (591)
                      .+.+.|++++..+...   .  .++....|+|.++...|+|.|.|.+.+  +.....+.+.+..+|..+...    ....
T Consensus       229 ~~~I~W~~ng~~i~~~---r--i~~~~~~L~I~nl~~sd~g~y~~~C~~--~~~i~~~~l~v~~pP~~P~nl----~C~~  297 (488)
T 2q7n_A          229 TKVLSGQIGNTLRPLI---H--LYGQTVAIHILNIPVSENSGTNIIFIT--DDDVYGTVVFAGYPPDVPQKL----SCET  297 (488)
T ss_dssp             SCEEEEEETTEECCCE---E--CSSSCEEEECCSCCCCCSSCEEEEEEE--SSCEEEEEEEEECCCCCCCSC----EEEB
T ss_pred             CCEEEEEECCEECchh---h--ccceEEEEEEeCCCcccCCcEEEEEEc--CCeEEEEEEEeeCCCCCCccc----EEEE
Confidence            4589999998776543   1  245566899999999999888887763  222346777777766543211    0111


Q ss_pred             cCCCeEEEEEeeeccC------CC--eEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425        401 DKGENVVVKIPFTGYP------KP--KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA  472 (591)
Q Consensus       401 ~~g~~~~l~c~~~~~p------~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~  472 (591)
                      .....+.+++......      ..  .+.+.+.+....- ..... .......+.+........|.++|.|.|..|....
T Consensus       298 ~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c-~~~~~-~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~S  375 (488)
T 2q7n_A          298 HDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVF-HRIEG-LTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQS  375 (488)
T ss_dssp             SSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEE-ECSSC-CCSSCEEEEEECCSSCCCCEEEEEEEETTEEEEE
T ss_pred             cCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCC-ccccc-cCCceEEEEEcCCCCccEEEEEEEEEeCCCCccc
Confidence            1223333333221111      01  1122112111000 00000 0023345566544445789999999999998543


Q ss_pred             EEEEEec--CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEE-ec--eeeeeEE--EEcCcc
Q psy12425        473 IVKIQIS--DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR-VG--NTRFTTM--AITGLS  545 (591)
Q Consensus       473 ~~~~~v~--~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~-~~--~~~~~~~--~i~~l~  545 (591)
                      ...+.+.  .+|.+|.++.+...+.+++.|+|++|...+ ..+..|+|+|+......|.. ..  ......+  .|.+|.
T Consensus       376 ~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~~-g~~l~YeV~Yr~~~~~~w~~~~~~~~~~~~~~~v~l~~L~  454 (488)
T 2q7n_A          376 AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFT-KINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLN  454 (488)
T ss_dssp             EEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEEEECS-SSEEEEEEEEBCTTSCCEEEEEEEECCEEEEEEEEECSCC
T ss_pred             eEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCCCCCC-CcceEEEEEEEECCCCCceEEEEEecCCCcEEEEEeCCCC
Confidence            3333322  368999999998888999999999886544 47899999999887766742 21  1123345  999999


Q ss_pred             cCceEEEEEEEEcCCcCC---CCCCCcce
Q psy12425        546 PGHQYEFRVYAENVYGRS---DPSTTSDL  571 (591)
Q Consensus       546 ~~~~Y~~~v~A~n~~G~~---~~s~~~~~  571 (591)
                      |++.|.|+|+|.| .|.|   ++|.+..+
T Consensus       455 P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~  482 (488)
T 2q7n_A          455 PYTAYTFRVRCSS-KTFWKWSRWSDEKRH  482 (488)
T ss_dssp             SSCCBBCCEEEEE-SSCSSCCCCCCCCCB
T ss_pred             CCceEEEEEEEEE-CCCCCCCCCcCCEeE
Confidence            9999999999999 8885   56655443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.93  E-value=2.7e-23  Score=202.68  Aligned_cols=173  Identities=12%  Similarity=0.203  Sum_probs=110.3

Q ss_pred             CCeEEe-eccccceeccccEEEEEEEcCCCC--CeeEEecCCccCCCCCc-eEEE--EeCC---eEEEEEcceecccceE
Q psy12425        292 APEIIV-PLRNANAIQNHNAQFQCTITGCPK--PTISWLKGSREITPSAR-HHIF--AEGD---TYTLIINSVYGVDADE  362 (591)
Q Consensus       292 ~p~~~~-~~~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~~-~~~~--~~~~---~~~l~i~~~~~~d~g~  362 (591)
                      +|.+.. .+....+..|+.+.|.|.+.|..+  ..|.|++++..+..... ....  .++.   ...|.|......|.|.
T Consensus       296 ~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~  375 (512)
T 1zvo_C          296 PLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTS  375 (512)
T ss_pred             CCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCe
Confidence            455433 334445678999999999988633  48999999887652111 1111  1111   2368899999999999


Q ss_pred             EEEEEEeCCcceeeeeEEEE------ecCCcccCCCCcccceeecCCCeEE-EEEeeeccCCC--eEEEeeCCeEeeecc
Q psy12425        363 YVCRAVNKGGVKSTKAELII------MTAPKFNVPPRFRDTAYFDKGENVV-VKIPFTGYPKP--KITWYRDNEVIESGG  433 (591)
Q Consensus       363 y~c~a~n~~g~~~~~~~l~v------~~~p~~~~~~~~~~~~~~~~g~~~~-l~c~~~~~p~~--~v~W~~~~~~~~~~~  433 (591)
                      |+|.|.|..+... ...+..      ..+|.+...+..      ..|+.+. |.|.+.|.+++  .|.|+++|..+....
T Consensus       376 y~C~a~n~~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~------~~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~  448 (512)
T 1zvo_C          376 VTCTLNHPSLPPQ-RLMALREPAAQAPVKLSLNLLASS------DPPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSG  448 (512)
T ss_pred             EEEEEEeCCCCCC-ceeEEeecCCCCCCCCEEEEEccC------cCCCCceEEEEEEeeeCCCCcEEEEEECCeECcCcc
Confidence            9999999877654 322322      123433221110      1688899 99999986543  689999999886542


Q ss_pred             ce--EEEec-CC-----eeEEEEeccCCCcceeEEEEEEcCCCccc
Q psy12425        434 HF--HVETS-ER-----HAILTIRDASNVDTAPYRVVAENDLGMDS  471 (591)
Q Consensus       434 ~~--~~~~~-~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~~~  471 (591)
                      ..  ..... +.     .+.|.|.....++.|.|+|.|.|......
T Consensus       449 ~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~  494 (512)
T 1zvo_C          449 FAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTL  494 (512)
T ss_pred             ccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCc
Confidence            11  11111 11     13466666666779999999999876543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.93  E-value=4.2e-24  Score=195.65  Aligned_cols=275  Identities=15%  Similarity=0.191  Sum_probs=175.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc-----eEEEEECCEE-------------eecCCceeEEEe-----CCeEEEEEccc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM-----EVSLTKNGRV-------------VQSDDRFKFTVL-----DDYIIIFIKEI   58 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~-----~v~W~~~~~~-------------~~~~~~~~~~~~-----~~~~~l~i~~~   58 (591)
                      |..+.+..|++++|.|.+.+.+.+     .|.|+|++..             +....++++...     ....+|.|.++
T Consensus         7 P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v   86 (313)
T 4fqp_A            7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL   86 (313)
T ss_dssp             CSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSC
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcC
Confidence            788999999999999999886655     4899998753             222233333211     12357999999


Q ss_pred             CCCCceEEEEEEEc-CCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceE
Q psy12425         59 RKEDAGDYTVNLSN-SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI  137 (591)
Q Consensus        59 ~~~d~g~Y~c~~~n-~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~  137 (591)
                      +.+|+|.|+|.+.+ ..|..+..+.|.+...|..+..+..                                        
T Consensus        87 ~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~----------------------------------------  126 (313)
T 4fqp_A           87 RVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQK----------------------------------------  126 (313)
T ss_dssp             CGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECC----------------------------------------
T ss_pred             ChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccc----------------------------------------
Confidence            99999999998864 4555566676766554422110000                                        


Q ss_pred             EEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCC
Q psy12425        138 CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG  217 (591)
Q Consensus       138 ~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~  217 (591)
                                   ..+..+....+.|.+...                                  .....+.|...    
T Consensus       127 -------------~~~~~~~~~~~~C~~~~~----------------------------------~P~~~i~W~~~----  155 (313)
T 4fqp_A          127 -------------VQLTGEPVPMARCVSTGG----------------------------------RPPAQITWHSD----  155 (313)
T ss_dssp             -------------BCCCSSCEEEEEEEEEEE----------------------------------BSCCEEEEEET----
T ss_pred             -------------eEeecCceEEEEEEccCc----------------------------------cCCcEEEeecC----
Confidence                         001122333455554311                                  01145788763    


Q ss_pred             CcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEe
Q psy12425        218 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV  297 (591)
Q Consensus       218 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~  297 (591)
                      +..+.... .........+ .      ....|.|......|.|.|+|.|.|..+....   ...+.+..   ..+|.+..
T Consensus       156 ~~~~~~~~-~~~~~~~~~~-~------~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~---~~~~~l~V---~~~P~v~~  221 (313)
T 4fqp_A          156 LGGMPNTS-QVPGFLSGTV-T------VTSLWILVPSSQVDGKNVTCKVEHESFEKPQ---LLTVNLTV---YYPPEVSI  221 (313)
T ss_dssp             TCCEEEEE-EEECSSTTCE-E------EEEEEEECCCGGGTTCEEEEEEECTTSSSCE---EEEEECCB---CEEEEEEE
T ss_pred             Cccccccc-eeeeeccccc-c------cceeeeecccccccCeeEEEEEEccCcCccc---eeeeeccc---ccCCcccc
Confidence            22222110 0000011110 0      1135788888999999999999997765431   22222221   24566654


Q ss_pred             ec-cccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425        298 PL-RNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS  375 (591)
Q Consensus       298 ~~-~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~  375 (591)
                      .. ....+.+|+.+.|.|.+.|+|.| .|.|++++..+....   . ..+.  +|.|.++...|+|.|+|.|.|..|...
T Consensus       222 ~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~---~-~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~  295 (313)
T 4fqp_A          222 SGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA---V-AQGA--QLLIRPVDKPINTTLICNVTNALGARQ  295 (313)
T ss_dssp             ECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---E-EETT--EEEECCCSSCCEEEEEEEEECSSCEEE
T ss_pred             ccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce---E-EeCC--EEEECcCChhhCEEEEEEEEeCCCcEE
Confidence            33 34456678999999999999998 699999998876432   2 2233  799999999999999999999999999


Q ss_pred             eeeEEEEecCCc
Q psy12425        376 TKAELIIMTAPK  387 (591)
Q Consensus       376 ~~~~l~v~~~p~  387 (591)
                      ..+.|.|.++|.
T Consensus       296 ~~~~l~V~~~PP  307 (313)
T 4fqp_A          296 AELTVQVKEGPP  307 (313)
T ss_dssp             EEEEEEEECCC-
T ss_pred             EEEEEEEEeCCC
Confidence            999999987653

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.93  E-value=2.6e-25  Score=204.63  Aligned_cols=265  Identities=15%  Similarity=0.171  Sum_probs=188.3

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCC-CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGC-PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      ..+|.+..+. +..+.+|+.+.|.|.+.+. |.+.+.|++++..+....++.+.  .+...|.|.++..+|+|.|+|.|.
T Consensus         5 ~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~   81 (317)
T 2y25_A            5 FTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILK   81 (317)
T ss_dssp             SSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEEEEE
T ss_pred             cCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE--CCeEEEEEccCCcccCeEEEEEEE
Confidence            3578877554 5788999999999999887 78999999999988766665543  344689999999999999999999


Q ss_pred             eCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeec----------cCCCeEEEeeCCeEeeeccceEEE
Q psy12425        369 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG----------YPKPKITWYRDNEVIESGGHFHVE  438 (591)
Q Consensus       369 n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~----------~p~~~v~W~~~~~~~~~~~~~~~~  438 (591)
                      |..|.......+.|...|.+...+   ....+..|..+.|.|.+.+          .|.+.+.|++++..+....++.+.
T Consensus        82 n~~g~~~~~~~l~v~~~~~~~~~~---~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~  158 (317)
T 2y25_A           82 DDRGKDKSRLKLVDEAFKELMMEV---CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG  158 (317)
T ss_dssp             SSSCEEEEEECCSTHHHHHHHHHH---HHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEE
T ss_pred             CCCCcEEEEEEEEEecCccccccC---CceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEe
Confidence            999877666665555443322111   1223456777888887776          789999999999999887888887


Q ss_pred             ecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecC-----------------CCCCCCCC-----eeeeecCC
Q psy12425        439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD-----------------RPDPPQFP-----TVEDIGHD  496 (591)
Q Consensus       439 ~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~-----------------~p~~p~~~-----~~~~~~~~  496 (591)
                      ..+....|.|.++...|.|.|+|.|.|..|.....+.+.+..                 ....|..+     ......+.
T Consensus       159 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~  238 (317)
T 2y25_A          159 VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK  238 (317)
T ss_dssp             ECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTS
T ss_pred             ccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCC
Confidence            777788899999999999999999999999888888776531                 01111100     12233566


Q ss_pred             eeEEEeeccccCCCcceeeEEEEeee---CCCCceEEece-eeeeEEEEcCcccCceEEEEEEEEcCCcCCC
Q psy12425        497 SLALVWRAPIWDGGSNITNYIVEKRE---HPMSSWIRVGN-TRFTTMAITGLSPGHQYEFRVYAENVYGRSD  564 (591)
Q Consensus       497 ~v~l~W~~p~~~~~~~~~~y~v~~~~---~~~~~~~~~~~-~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~  564 (591)
                      .+.|.|.....    +...+.+....   .....+..... .....+.|.++...+.+.|+|.|.|..|...
T Consensus       239 ~~~l~C~~~g~----p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  306 (317)
T 2y25_A          239 ALNLTCNVWGD----PPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSET  306 (317)
T ss_dssp             BBCEEEEEECS----SCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEE
T ss_pred             EEEEEEEEecC----CCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEE
Confidence            78888875321    11122222211   11222222222 4446899999999999999999999999653

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.93  E-value=8.7e-25  Score=201.44  Aligned_cols=222  Identities=14%  Similarity=0.124  Sum_probs=163.7

Q ss_pred             CceeeecCcccCCcE-EEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCC-CCe
Q psy12425        246 PSQINIPNLIEGRQY-EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP-KPT  323 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~-~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~~  323 (591)
                      ...|.|.++...|.| .|+|.|.|..|.....  .....+.     .+|.+........+.+|+.+.|.|.+.+.| .+.
T Consensus        88 ~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~--~~~~v~~-----~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~  160 (329)
T 3oq3_B           88 NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG--IVRSHIR-----KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNN  160 (329)
T ss_dssp             TTEEEESSCCGGGGGCCEEEEEECTTSCEEEE--EEEEEEC-----CCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCE
T ss_pred             cceEEEcCCChHhCCCcEEEEEEeCCCceeeE--EEEEEEc-----CCCcEeccccceEEeCCCcEEEEeccCCCCCCce
Confidence            578999999999999 9999999988753211  1112222     345455444455577899999999999999 899


Q ss_pred             eEEecCCccCCCC-CceEEEEeCCeEEEEEcceecccceEEEEEEEeC--Ccceeee----eEEEEecCCcccCCCCccc
Q psy12425        324 ISWLKGSREITPS-ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK--GGVKSTK----AELIIMTAPKFNVPPRFRD  396 (591)
Q Consensus       324 v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~--~g~~~~~----~~l~v~~~p~~~~~~~~~~  396 (591)
                      +.|++++..+... .++... .   ..|.|.++..+|+|.|+|.|.|.  .|.....    +.|.|..+|....+.....
T Consensus       161 i~W~k~~~~l~~~~~~~~~~-~---~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~  236 (329)
T 3oq3_B          161 ITWYKNNQELIIDGTKYSQS-G---QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP  236 (329)
T ss_dssp             EEEEETTEECCCSSSSEEEE-T---TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCS
T ss_pred             EEEEECCccCCCCCceEecC-C---CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCC
Confidence            9999999888533 333332 2   37999999999999999999997  6554333    6778877662211100123


Q ss_pred             ceeecCCCeEEEEEeeeccC---CC-eEEEeeCCeEee-eccceEEE--ecC--CeeEEEEeccCCCcce-eEEEEEEcC
Q psy12425        397 TAYFDKGENVVVKIPFTGYP---KP-KITWYRDNEVIE-SGGHFHVE--TSE--RHAILTIRDASNVDTA-PYRVVAEND  466 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~~~p---~~-~v~W~~~~~~~~-~~~~~~~~--~~~--~~~~l~i~~~~~~~~g-~y~c~a~n~  466 (591)
                      ...+..|+.+.|.|.+.|.|   .+ .+.|+++|..+. .+......  ...  ....|.|.++..+|.| .|+|.|.|.
T Consensus       237 ~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~  316 (329)
T 3oq3_B          237 KINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNY  316 (329)
T ss_dssp             EEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECS
T ss_pred             eeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEec
Confidence            35678999999999999998   77 899999998743 22222111  111  4678999999999999 999999999


Q ss_pred             CCccceEEEEEe
Q psy12425        467 LGMDSAIVKIQI  478 (591)
Q Consensus       467 ~g~~~~~~~~~v  478 (591)
                      .|.....+.|.+
T Consensus       317 ~G~~~~~~~l~v  328 (329)
T 3oq3_B          317 YFDKTLTTTVVL  328 (329)
T ss_dssp             SCEEEEEEEEEE
T ss_pred             CCceEEEEEEEe
Confidence            999988888776

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.93  E-value=3.1e-24  Score=195.79  Aligned_cols=262  Identities=16%  Similarity=0.144  Sum_probs=173.9

Q ss_pred             cccceeccccEEEEEEEcCC-----CCCeeEEecCCccCCCCCceEEEEeCC-eEEEEEcceecccceEEEEEEEeCCcc
Q psy12425        300 RNANAIQNHNAQFQCTITGC-----PKPTISWLKGSREITPSARHHIFAEGD-TYTLIINSVYGVDADEYVCRAVNKGGV  373 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~c~a~n~~g~  373 (591)
                      .+..+..|+.++|.|.+.+.     |.+.+.|.+++..+... ++....++. ...|+|.++...|+|.|.|.+.+..+.
T Consensus         8 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B            8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGG-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             SCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTC-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred             CCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCcc-ceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence            45667899999999999987     57899999999877543 222222332 268999999999999999998665444


Q ss_pred             eeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CCCeEEEeeCCeEeeeccceEEEe-------------
Q psy12425        374 KSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKPKITWYRDNEVIESGGHFHVET-------------  439 (591)
Q Consensus       374 ~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~-------------  439 (591)
                      ....+.|.+..+|..                ...|.|...+. ....+.|........ ...|.+..             
T Consensus        87 ~~~~~~l~v~~~P~~----------------P~~l~c~~~~~~~~~~~~W~~~~~~~~-~~~Y~l~~~~~~~~~~~~~~~  149 (313)
T 2d9q_B           87 ILDQVELRAGYPPAI----------------PHNLSCLMNLTTSSLICQWEPGPETHL-PTSFTLKSFKSRGNCQTQGDS  149 (313)
T ss_dssp             EEEEEEEEECCCCCC----------------CEEEEEEEETTTTEEEEEEECCSCCSS-CCEEEEEEEECCTTSCSCCCC
T ss_pred             eEEEEEEccCCCCCC----------------CccceeeECCCCccEEEEecCCCCCCC-ceeEEEEEEecCCCcccCCcc
Confidence            444566666655432                23444554432 234455543221000 01111110             


Q ss_pred             ------cCCeeEEEEe--ccCCCcceeEEEEEEcCCCccc-eEEEEEec--CCCCCCCCCeeeee------cCCeeEEEe
Q psy12425        440 ------SERHAILTIR--DASNVDTAPYRVVAENDLGMDS-AIVKIQIS--DRPDPPQFPTVEDI------GHDSLALVW  502 (591)
Q Consensus       440 ------~~~~~~l~i~--~~~~~~~g~y~c~a~n~~g~~~-~~~~~~v~--~~p~~p~~~~~~~~------~~~~v~l~W  502 (591)
                            ........+.  ++.+...|.++|.|.|..|... ....+...  .+|.+|.++.+...      ..+++.|+|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W  229 (313)
T 2d9q_B          150 ILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSW  229 (313)
T ss_dssp             EEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEE
T ss_pred             cccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEE
Confidence                  1122344554  4889999999999999999862 23334333  36889988877765      468999999


Q ss_pred             eccccCCCcceeeEEEEee-eCCCCceEEec--eeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcc--eEEeccc
Q psy12425        503 RAPIWDGGSNITNYIVEKR-EHPMSSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD--LITTYGE  577 (591)
Q Consensus       503 ~~p~~~~~~~~~~y~v~~~-~~~~~~~~~~~--~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~--~~~t~~~  577 (591)
                      ++|.. ++..+.+|+|+|+ ......|..+.  ......+.|.+|.|++.|.|+|+|.|..|.|.+|..+.  .++|.+.
T Consensus       230 ~~p~~-~~~~~l~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~  308 (313)
T 2d9q_B          230 EPWQP-GLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTER  308 (313)
T ss_dssp             ECCGG-GTTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC-
T ss_pred             CCCCC-CCceeEEEEEEEccCCCCCCcEEcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCcc
Confidence            98864 4445689999999 66677888652  33457899999999999999999999999887665543  3456655


Q ss_pred             ccc
Q psy12425        578 LLS  580 (591)
Q Consensus       578 ~p~  580 (591)
                      +|.
T Consensus       309 ~P~  311 (313)
T 2d9q_B          309 AAA  311 (313)
T ss_dssp             ---
T ss_pred             CCC
Confidence            554

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.93  E-value=9.4e-25  Score=200.01  Aligned_cols=222  Identities=16%  Similarity=0.224  Sum_probs=163.3

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEc-CCCCCee
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTI  324 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~-~~p~~~v  324 (591)
                      ..+|.|.+++..|+|.|+|.+.+..+...  .....+.+     ..+|.+........+..++.+.+.|.+. +.|.+.+
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~--~~~~~l~v-----~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i  150 (313)
T 4fqp_A           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSR--SVDIWLRV-----LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQI  150 (313)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECSSSCEE--EEEEEECC-----BBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEE
T ss_pred             ceEEEECcCChhhCEEEEEEEeeccCcce--eeeeeeee-----ccCCcceecccceEeecCceEEEEEEccCccCCcEE
Confidence            35799999999999999999865432211  12222322     2456666666667778889999999874 7899999


Q ss_pred             EEecCCccCCCCCceEEEEeCC---eEEEEEcceecccceEEEEEEEeCCccee--eeeEEEEecCCcccCCCCccccee
Q psy12425        325 SWLKGSREITPSARHHIFAEGD---TYTLIINSVYGVDADEYVCRAVNKGGVKS--TKAELIIMTAPKFNVPPRFRDTAY  399 (591)
Q Consensus       325 ~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~~--~~~~l~v~~~p~~~~~~~~~~~~~  399 (591)
                      .|++++..+..........++.   ...|.|.+...+|.|.|+|.|.|..+...  ....|.|..+|.+...+.  ....
T Consensus       151 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~--~~~~  228 (313)
T 4fqp_A          151 TWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGY--DNNW  228 (313)
T ss_dssp             EEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECC--CSCE
T ss_pred             EeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccc--ccee
Confidence            9999887664322221111221   12588999999999999999999877654  445666777776643322  2334


Q ss_pred             ecCCCeEEEEEeeeccCCC-eEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        400 FDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       400 ~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      +..|+.+.|.|.+.|.|.| .|.|+++|..+....   ..   ....|.|.++...|+|.|+|.|.|..|..+..+.|.|
T Consensus       229 ~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~---~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  302 (313)
T 4fqp_A          229 YLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA---VA---QGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV  302 (313)
T ss_dssp             ETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---EE---ETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce---EE---eCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEE
Confidence            5678999999999999999 699999998775432   11   2357999999999999999999999999999999999


Q ss_pred             cCCC
Q psy12425        479 SDRP  482 (591)
Q Consensus       479 ~~~p  482 (591)
                      ..+|
T Consensus       303 ~~~P  306 (313)
T 4fqp_A          303 KEGP  306 (313)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            8754

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.92  E-value=1.3e-23  Score=180.59  Aligned_cols=176  Identities=20%  Similarity=0.302  Sum_probs=152.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC--CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD--DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|+|..+...  .++++...+...+|.|.+++.+|.|.|+|.|.|..|....
T Consensus        25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  104 (215)
T 3mtr_A           25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESL  104 (215)
T ss_dssp             CSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEE
T ss_pred             CceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEE
Confidence            56788999999999999999999999999999999776  4566666667789999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeec----CcceEEEcCCcC
Q psy12425         80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC----HDTTFIVQGLTE  155 (591)
Q Consensus        80 ~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~  155 (591)
                      .+.|.|...|.+|.. +.+ .....++.|.|.+|..+++.++..|.+++...+...|.......    ....+.|.+|.+
T Consensus       105 ~~~l~v~~~P~~p~~-~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~  182 (215)
T 3mtr_A          105 EFILVQADTPSSPSI-DQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKP  182 (215)
T ss_dssp             EEEEEECCCCCCCEE-EEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCT
T ss_pred             EEEEEECCCCCCCcc-eEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCC
Confidence            999999999988865 333 45678899999988878888999999999998888888765422    237899999999


Q ss_pred             CcEEEEEEEEEccCCCCCCCCccC
Q psy12425        156 GQEYLFHVMAVNENGMGPPLEGIN  179 (591)
Q Consensus       156 ~~~y~~~~~a~n~~g~~~~~~~~~  179 (591)
                      ++.|.|+|.|.|..|.+..+....
T Consensus       183 ~~~y~~~~~A~N~~G~s~~S~~~~  206 (215)
T 3mtr_A          183 ETTYAVRLAALNGKGLGEISAASE  206 (215)
T ss_dssp             TCEEEEEEEEEESSCBCCCCCCEE
T ss_pred             CCEEEEEEEEEeCCcccCccccee
Confidence            999999999999999988875543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.92  E-value=9.5e-24  Score=181.16  Aligned_cols=190  Identities=26%  Similarity=0.456  Sum_probs=152.5

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCC-CCCceEEEEe-CCeEEEEEcceec-ccceEEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT-PSARHHIFAE-GDTYTLIINSVYG-VDADEYVCR  366 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~~-~~~~~l~i~~~~~-~d~g~y~c~  366 (591)
                      ..+|.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+... ++..+|.|.++.. .|+|.|+|.
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence            468899988888999999999999999999999999999998886 4456665543 4457999999999 999999999


Q ss_pred             EEeCCcc-eeeeeEEEEecCC-------cccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeec-cceEE
Q psy12425        367 AVNKGGV-KSTKAELIIMTAP-------KFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG-GHFHV  437 (591)
Q Consensus       367 a~n~~g~-~~~~~~l~v~~~p-------~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~  437 (591)
                      |.|..|. ......|.|...+       .+...+   ....+..|+.+.|.|.+.|.|.+.+.|++++..+... ..+.+
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~---~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~  160 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEGDKTPAGFPVITQGP---GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL  160 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECTTCSCTTCCEEEECC---CCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEE
T ss_pred             EEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCC---CceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEc
Confidence            9999998 6778888888763       333222   2345678999999999999999999999999988653 33333


Q ss_pred             EecCCeeEEEEeccCCCcceeEEEEEEcCCCccce-EEEEEecCCCCCCC
Q psy12425        438 ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA-IVKIQISDRPDPPQ  486 (591)
Q Consensus       438 ~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~-~~~~~v~~~p~~p~  486 (591)
                      .    ...|.|.++...|.|.|+|.|.|..|.... .+.|.|...+..+.
T Consensus       161 ~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~~~  206 (212)
T 2yd1_A          161 K----DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTK  206 (212)
T ss_dssp             E----TTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C--
T ss_pred             c----CCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecccccc
Confidence            2    348999999999999999999999999865 48888887765543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.92  E-value=7.4e-25  Score=200.41  Aligned_cols=277  Identities=14%  Similarity=0.143  Sum_probs=176.1

Q ss_pred             CCceeeeecCCeEEEEEEecc-CCCceEEEEECCEEe---------------ecC--CceeEEE-eCCeEEEEEcccCCC
Q psy12425          1 MPNALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVV---------------QSD--DRFKFTV-LDDYIIIFIKEIRKE   61 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~---------------~~~--~~~~~~~-~~~~~~l~i~~~~~~   61 (591)
                      +|..+++.+|++++|.|.+.+ .+.+.|+|+|++...               ...  .|..+.. .....+|.|.+++.+
T Consensus         5 v~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~   84 (308)
T 4fom_A            5 VEPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFS   84 (308)
T ss_dssp             CCCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGG
T ss_pred             cCCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHH
Confidence            467899999999999999875 455689999965321               111  1222111 123357999999999


Q ss_pred             CceEEEEEEEcC-CeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEE
Q psy12425         62 DAGDYTVNLSNS-SGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIS  140 (591)
Q Consensus        62 d~g~Y~c~~~n~-~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~  140 (591)
                      |+|.|+|.|.|. .|..+..+.+.+...|..+...                .+.     .+                   
T Consensus        85 D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~----------------~~~-----~~-------------------  124 (308)
T 4fom_A           85 DSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIK----------------GPD-----SL-------------------  124 (308)
T ss_dssp             GCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEE----------------CSS-----CC-------------------
T ss_pred             HCEEEEEEEeeCCCcceeeeeEEEeeecccccccc----------------ccc-----ee-------------------
Confidence            999999999886 5666677777777654322110                000     00                   


Q ss_pred             eecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcc
Q psy12425        141 TTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSR  220 (591)
Q Consensus       141 ~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~  220 (591)
                                 -...+....+.|.+...                                  .....++|...    +..
T Consensus       125 -----------~~~~~~~~~l~C~~~~g----------------------------------~P~~~i~W~~~----~~~  155 (308)
T 4fom_A          125 -----------IDGGNETVAAICIAATG----------------------------------KPVAHIDWEGD----LGE  155 (308)
T ss_dssp             -----------CTTCSCEEEEEEEEEEE----------------------------------BSCCEEEECCC----SSB
T ss_pred             -----------EEcCCceEEEEEEecCC----------------------------------cCCceEEEEEC----Ccc
Confidence                       01123344556654311                                  01145788763    222


Q ss_pred             eEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeec-
Q psy12425        221 IQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL-  299 (591)
Q Consensus       221 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~-  299 (591)
                      +.......   .....       .....|.|..+...|.|.|+|.|.|..|....   ...+.+..   ..+|.+...+ 
T Consensus       156 ~~~~~~~~---~~~~~-------~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~---~~~~~l~V---~~~P~~~~~~~  219 (308)
T 4fom_A          156 MESTTTSF---PNETA-------TIISQYKLFPTRFARGRRITCVVKHPALEKDI---RYSFILDI---QYAPEVSVTGY  219 (308)
T ss_dssp             CCEEEEEC---TTSCE-------EEEEEEEECCCGGGTTCEEEEEEECTTCSSCE---EEEEECCC---CEEEEECCBCC
T ss_pred             ccccccee---eeecc-------cccccceEEeeeecCCccEEEEEEccCCCCce---EEeEEEEE---ecCCeeEEccc
Confidence            21111000   00000       01246889999999999999999998765432   22222221   2345554433 


Q ss_pred             cccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeee
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA  378 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~  378 (591)
                      ....+.+|+.+.|.|.+.|.|.| .+.|++++..+......     .+...|.|.++..+|+|.|+|.|.|..|..+..+
T Consensus       220 ~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~-----~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~  294 (308)
T 4fom_A          220 DGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLA-----SDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQK  294 (308)
T ss_dssp             CSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBC-----STTEEECCSCCCSCCCSEEEEEEEETTEEEEEEE
T ss_pred             ceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEE-----cCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEE
Confidence            33456678999999999999988 69999998877543211     1234577889999999999999999999999999


Q ss_pred             EEEEecCCc
Q psy12425        379 ELIIMTAPK  387 (591)
Q Consensus       379 ~l~v~~~p~  387 (591)
                      .|.|.++|.
T Consensus       295 ~l~V~~~P~  303 (308)
T 4fom_A          295 VIYISDPPH  303 (308)
T ss_dssp             ECCEECCC-
T ss_pred             EEEEEcCCC
Confidence            999998775

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.92  E-value=8.8e-24  Score=181.28  Aligned_cols=189  Identities=23%  Similarity=0.405  Sum_probs=150.8

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEE-eCCeEEEEEcce-ecccceEEEEEEE
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSV-YGVDADEYVCRAV  368 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~-~~~d~g~y~c~a~  368 (591)
                      .+|.+...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+.......... .+....|.|.++ ..+|+|.|+|.|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~   84 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS   84 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEE
Confidence            57888888888889999999999999999999999999998887654433332 335668999999 4999999999999


Q ss_pred             eCCcceeeeeEEEEecCCc-------ccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeec---cceEEE
Q psy12425        369 NKGGVKSTKAELIIMTAPK-------FNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG---GHFHVE  438 (591)
Q Consensus       369 n~~g~~~~~~~l~v~~~p~-------~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~---~~~~~~  438 (591)
                      |..|.......|.|...+.       +...+   ....+..|+.+.|.|.+.|.|.+.+.|++++..+...   .++...
T Consensus        85 n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~---~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~  161 (212)
T 2yd6_A           85 NNVGEISVSTRLTVLREDQIPRGFPTIDMGP---QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQL  161 (212)
T ss_dssp             ETTEEEEEEEEEEEECGGGCCTTCCEEEECC---CCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEE
T ss_pred             cCCCcEEEEEEEEEeccCccCCCcceeecCC---cceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEE
Confidence            9999988888898887532       22222   2345678999999999999999999999999988653   345555


Q ss_pred             ecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEEEecCCC
Q psy12425        439 TSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRP  482 (591)
Q Consensus       439 ~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p  482 (591)
                      .......|.|.++..+|.|.|+|.|.|..|.. +..+.+.+..+|
T Consensus       162 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          162 RSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             EETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             ecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence            55667999999999999999999999999987 455666665443

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.92  E-value=5.8e-24  Score=179.98  Aligned_cols=178  Identities=16%  Similarity=0.290  Sum_probs=138.5

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEEeC--CeEEEEEcceecccceEEEEEEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEG--DTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      +|.+.... +..+.+|+.+.|.|.+.+ .|.|.+.|++++..+..+.++.+..++  +..+|.|.++..+|+|.|+|.|.
T Consensus         3 ~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            3 DPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             ---CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            35555443 567899999999999964 799999999999999888888877665  56789999999999999999999


Q ss_pred             eCCcceeeeeEEEEe---------------------cCCcccCCCCcccceeecCCCeEEEEEeeecc-CCCeEEEeeCC
Q psy12425        369 NKGGVKSTKAELIIM---------------------TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKPKITWYRDN  426 (591)
Q Consensus       369 n~~g~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~  426 (591)
                      |  |.......+.+.                     .+|.+..++    ...+.+|..+.|.|.+.|. |.|.+.|+++|
T Consensus        82 N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~----~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g  155 (207)
T 3rbs_A           82 D--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL----SWEVTGECNVLLKCKVANIKKETHIVWYKDE  155 (207)
T ss_dssp             E--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE----EEEEETTTEEEEEEEEESCCTTCEEEEEETT
T ss_pred             C--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC----CcEEcCCCcEEEEEEEeCCCCCCEEEEEECC
Confidence            9  444443333321                     123222111    2456889999999999999 99999999999


Q ss_pred             eEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        427 EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      ..+....++  ........|.|.++..+|+|.|+|.|.|..|....++.|..
T Consensus       156 ~~l~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          156 REISVDEKH--DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EEECCCCCC--CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EECCCCCce--EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            998765543  22344568999999999999999999999999988887765

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.92  E-value=6.8e-23  Score=187.61  Aligned_cols=267  Identities=15%  Similarity=0.147  Sum_probs=190.8

Q ss_pred             eeeecCCeEEEEEEeccCC-CceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEE
Q psy12425          5 LYIPEGDNTKVKIFYAGDQ-PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI   83 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l   83 (591)
                      +.+.+|++|+|.|.+.+.+ .+.|.|++++..+... ..+....+  ..|.|.+++..|+|.|+|.   ..|.....+.|
T Consensus        16 v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~--~~L~i~~v~~~d~G~Y~C~---~~g~~~~~~~L   89 (325)
T 1n26_A           16 LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH-PSRWAGMG--RRLLLRSVQLHDSGNYSCY---RAGRPAGTVHL   89 (325)
T ss_dssp             EEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC-CEEEEEES--SEEEECSCCGGGCEEEEEE---SSSSCSCEEEE
T ss_pred             EECCCCCcEEEEeCCCCCCCCceEEEEECCccCCcc-cccccccc--ceEEecccchhhCeEeEEE---eCCEEeeeEEE
Confidence            4448999999999998754 7899999988765222 22332222  4799999999999999999   36777788999


Q ss_pred             EEecCCCCCCCCcceE-EecCceEEEEecCCCCCCCcceeeEEEEEEecC---CCce-EEEEe--ecCcceEEEcCCc-C
Q psy12425         84 NITGLPGPPIGPLDVS-EITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS---MPHW-ICIST--TCHDTTFIVQGLT-E  155 (591)
Q Consensus        84 ~v~~~p~~p~~~~~~~-~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~---~~~~-~~~~~--~~~~~~~~i~~l~-~  155 (591)
                      .|..+|..|.  +... .....++.+.|.++.+ ++ ....|.+.++...   ...| ..+..  ......+.+..+. +
T Consensus        90 ~V~~pP~~P~--l~c~~~~~~~~~~c~W~~~~~-~~-~~~~y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~  165 (325)
T 1n26_A           90 LVDVPPEEPQ--LSCFRKSPLSNVVCEWGPRST-PS-LTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGD  165 (325)
T ss_dssp             EECCCCCCCC--CEEEBSSTTSCEEEEECCSSC-CC-TTCEEEEEEEEESSSSCEEEEEEEEEETTTTEEEEEECCCTTC
T ss_pred             EeccCCCCCc--eeEEeecCCCcEEEEECCCCC-CC-CCceEEEEEEEccCCCCCcccccCCCCCCCCCEEEEECCCccc
Confidence            9999888776  4443 2235689999997653 33 3467888776532   1122 23322  2334567787765 6


Q ss_pred             CcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecC--CeEEEEEecCCCC-CCcceEEEEEEeeecC
Q psy12425        156 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGG--DFVNLSWDKPLDD-GGSRIQGYWIDKHEVG  232 (591)
Q Consensus       156 ~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~~v~l~w~~~~~~-~~~~~~~y~~~~~~~~  232 (591)
                      ...|.|+|.|.|..|.+..... .  ........|.+|..+.+....+  .++.|+|.+|... .+..+..|.|+++..+
T Consensus       166 ~~~Y~f~v~A~N~~G~~~s~~~-~--~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~  242 (325)
T 1n26_A          166 SSFYIVSMCVASSVGSKFSKTQ-T--FQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAER  242 (325)
T ss_dssp             CCEEEEEEEEEETTEEEECCCE-E--EETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETT
T ss_pred             CcEEEEEEEEEcCCCCcccCcE-E--EeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEEeCC
Confidence            7999999999999997532111 1  0111223567777777766543  5899999998653 3446799999999988


Q ss_pred             CCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEc
Q psy12425        233 SDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK  285 (591)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~  285 (591)
                      ...|...... .....+.|.+|.++..|.|+++|.|..|.+.++..+..+...
T Consensus       243 ~~~W~~~~~~-~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~  294 (325)
T 1n26_A          243 SKTFTTWMVK-DLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGT  294 (325)
T ss_dssp             CSCCEEEECG-GGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEEC
T ss_pred             CCCCEEEccc-CCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCcccee
Confidence            8889876543 345788999999999999999999999988888777666654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.92  E-value=1.7e-23  Score=189.70  Aligned_cols=269  Identities=14%  Similarity=0.124  Sum_probs=174.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.+    .+.|++++...     ..........+|.|.+++.+|+|.|+|.+.|..|..+..+
T Consensus        11 ~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   81 (289)
T 3ejj_X           11 GPELVVEPGETVTLRCVSNG----SVEWDGPISPY-----WTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTI   81 (289)
T ss_dssp             SSEEEECTTCCEEEEEECSS----CCEEECSCSSS-----SEECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEE
T ss_pred             CceEEECCCCCEEEEEEeCC----cEEEccCCCce-----EEEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEE
Confidence            56788999999999999987    49999876421     2222334456899999999999999999999988888888


Q ss_pred             EEEEecCCCCCCC-CcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEE
Q psy12425         82 TINITGLPGPPIG-PLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYL  160 (591)
Q Consensus        82 ~l~v~~~p~~p~~-~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  160 (591)
                      .|.|...|.+... +......                                                     .+....
T Consensus        82 ~l~V~~~~~~~~~~~~~~~v~-----------------------------------------------------~g~~v~  108 (289)
T 3ejj_X           82 HLYVKDPAHSWNLLAQEVTVV-----------------------------------------------------EGQEAV  108 (289)
T ss_dssp             EEEECCSSCSEEESCSEEEEE-----------------------------------------------------TTSCEE
T ss_pred             EEEEeCCCcceecccceEEEe-----------------------------------------------------cCCceE
Confidence            8988875543111 0011111                                                     333444


Q ss_pred             EEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEE
Q psy12425        161 FHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN  240 (591)
Q Consensus       161 ~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~  240 (591)
                      +.|.+...     .                             ....+.|...   ++..+          .......  
T Consensus       109 L~C~~~~~-----~-----------------------------~~~~v~W~~~---~~~~~----------~~~~~~~--  139 (289)
T 3ejj_X          109 LPCLITDP-----A-----------------------------LKDSVSLMRE---GGRQV----------LRKTVYF--  139 (289)
T ss_dssp             ECEEESCG-----G-----------------------------GGGSEEEEEG---GGEEC----------CTTCCEE--
T ss_pred             eEEEccCC-----C-----------------------------cceEEEEEec---CCeec----------CCCccEE--
Confidence            55554310     0                             0011455421   00000          0000001  


Q ss_pred             eeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcC-C
Q psy12425        241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITG-C  319 (591)
Q Consensus       241 ~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~  319 (591)
                        ......|.|.++...|.|.|+|.|.+..+..  ......+.+... ...+|.+...+....+.+|+.+.|.|.+.+ .
T Consensus       140 --~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~--~~~~~~l~V~~~-~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~  214 (289)
T 3ejj_X          140 --FSPWRGFIIRKAKVLDSNTYVCKTMVNGRES--TSTGIWLKVNRV-HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAE  214 (289)
T ss_dssp             --EETTTEEEESSCCGGGCEEEEEEEEETTEEE--ECCCEEEEEESS-CCCCCEEEEESSSEECCSSSCEEEEEEEEESS
T ss_pred             --ECCCCCEEEeecccccCEEEEEEEEeCCCcc--ccccEEEEEEEC-CCCCCeEEecCCceEEEeCCcEEEEEEeCCCC
Confidence              1234569999999999999999999432211  123445555421 135788888777777789999999999988 7


Q ss_pred             CCCeeEEecCCccCCCCCceEEEE--eCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCC
Q psy12425        320 PKPTISWLKGSREITPSARHHIFA--EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP  386 (591)
Q Consensus       320 p~~~v~W~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p  386 (591)
                      |.+.+.|++++..+..........  .....+|.|.++..+|.|.|+|.|.|..|....++.|.+..++
T Consensus       215 p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          215 VGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH  283 (289)
T ss_dssp             SCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred             CceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence            999999999998876543222110  0113489999999999999999999999999999888886654

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=193.26  Aligned_cols=258  Identities=15%  Similarity=0.146  Sum_probs=180.1

Q ss_pred             cceeccccEEEEEEEc-CCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEE
Q psy12425        302 ANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL  380 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l  380 (591)
                      +.+.+|+.+.|.|... +.|.+.+.|++++..+....++.+...+...+|.|.++..+|+|.|+|.|.|..|... +..+
T Consensus        11 ~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l   89 (312)
T 2y23_A           11 VNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLI   89 (312)
T ss_dssp             EEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEE
T ss_pred             EEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEE
Confidence            4477899999999885 6889999999999999888899888888888999999999999999999999888544 4555


Q ss_pred             EEec------------CCcccCCCCcccceeecCCCeEEEEEeee-ccCCCeEEEeeCCeEeeeccceEEEec--CCeeE
Q psy12425        381 IIMT------------APKFNVPPRFRDTAYFDKGENVVVKIPFT-GYPKPKITWYRDNEVIESGGHFHVETS--ERHAI  445 (591)
Q Consensus       381 ~v~~------------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~  445 (591)
                      .+..            +|.+...+.  ....+..|+.+.|.|.+. +.|.+.+.|++++..+....++.+...  .....
T Consensus        90 ~v~~~~~~~~~~~~~~~p~~~~~~~--~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~  167 (312)
T 2y23_A           90 DEEELKRLLALSHEHKFPTVPVKSE--LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE  167 (312)
T ss_dssp             CHHHHHHHHHHHHHHHSCBCCEEEE--EEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEE
T ss_pred             EEeeeeeeecccccCCCCccccccC--CceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEE
Confidence            5543            444332211  245678999999999998 899999999999999988777766654  45677


Q ss_pred             EEEeccCCCcceeEEEEEEcCCCccceEEEEEec----------------CCCCCCCC---CeeeeecCCeeEEEeeccc
Q psy12425        446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS----------------DRPDPPQF---PTVEDIGHDSLALVWRAPI  506 (591)
Q Consensus       446 l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~----------------~~p~~p~~---~~~~~~~~~~v~l~W~~p~  506 (591)
                      |.|.++..+|+|.|+|.|.|..+.......+...                ....+|..   +......+..+.|.|....
T Consensus       168 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~  247 (312)
T 2y23_A          168 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVAN  247 (312)
T ss_dssp             EEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEES
T ss_pred             EEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcC
Confidence            9999999999999999998765544333333100                00011221   1123345678889988632


Q ss_pred             cCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCC
Q psy12425        507 WDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSD  564 (591)
Q Consensus       507 ~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~  564 (591)
                      ......+.+|+-............  ......|.|.++...+.+.|+|.|.|.+|...
T Consensus       248 ~p~~~~v~W~~~g~~~~~~~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~  303 (312)
T 2y23_A          248 IKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDK  303 (312)
T ss_dssp             CCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEE
T ss_pred             CCCCCEEEEeeCCEECCCCCcEEE--ECCEEEEEECcCCHHHCEEEEEEEEcCCCcee
Confidence            111112222210000000001111  12346999999999999999999999999643

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.92  E-value=4.4e-23  Score=173.64  Aligned_cols=178  Identities=21%  Similarity=0.352  Sum_probs=147.9

Q ss_pred             CCeEEeeccccceec-cccEEEEEEEcCCCC--CeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        292 APEIIVPLRNANAIQ-NHNAQFQCTITGCPK--PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~-g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      +|.+... ....+.+ |+.+.|.|.+.+.|.  +.+.|++++..+.......     ....|.|.++..+|+|.|+|.|.
T Consensus         3 ~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~   76 (190)
T 2wv3_A            3 EPRIVTS-EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVYH   76 (190)
T ss_dssp             CCEEEEC-CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCccccc-ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEEE
Confidence            5666654 3444556 999999999998887  8899999998887654332     34589999999999999999999


Q ss_pred             eCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEee--CCeEee---eccceEEEecCCe
Q psy12425        369 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR--DNEVIE---SGGHFHVETSERH  443 (591)
Q Consensus       369 n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~--~~~~~~---~~~~~~~~~~~~~  443 (591)
                      |. |.......|.|..+|.+...+   ....+..|+.+.|.|.+.|.|.|.+.|++  ++..+.   ...++.+...+..
T Consensus        77 n~-~~~~~~~~l~V~~~p~~~~~~---~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~  152 (190)
T 2wv3_A           77 FV-SAPKANATIEVKAAPDITGHK---RSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY  152 (190)
T ss_dssp             ET-TEEEEEEEEEEECCCEEEEEC---SEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSE
T ss_pred             eC-CcccccEEEEEecCCcccccC---CcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCe
Confidence            99 888888999999988876543   23457899999999999999999999999  777664   4556777766777


Q ss_pred             eEEEEeccC-CCcceeEEEEEEcCCCccceEEEEEec
Q psy12425        444 AILTIRDAS-NVDTAPYRVVAENDLGMDSAIVKIQIS  479 (591)
Q Consensus       444 ~~l~i~~~~-~~~~g~y~c~a~n~~g~~~~~~~~~v~  479 (591)
                      ..|.|.++. .+|.|.|+|.|.|..|.....+.|.|.
T Consensus       153 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          153 TELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            899999999 799999999999999999888888764

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.92  E-value=3e-24  Score=180.38  Aligned_cols=169  Identities=15%  Similarity=0.238  Sum_probs=131.5

Q ss_pred             ccceeccccEEEEEE---EcCCCCCeeEEecCCccCCC-----------------CCceEEEEeCCeEEEEEcceecccc
Q psy12425        301 NANAIQNHNAQFQCT---ITGCPKPTISWLKGSREITP-----------------SARHHIFAEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~---~~~~p~~~v~W~~~~~~~~~-----------------~~~~~~~~~~~~~~l~i~~~~~~d~  360 (591)
                      ++++..|+.+.|.|.   +.+.|.+.|.|++++.....                 ..++.+...++.++|.|.++..+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            466889999999995   56789999999997654321                 1234455666778999999999999


Q ss_pred             eEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEee----eccceE
Q psy12425        361 DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIE----SGGHFH  436 (591)
Q Consensus       361 g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~----~~~~~~  436 (591)
                      |.|+|.|.|..|.......|.|..+|.+...+   ....+.+|+.+.|.|.+.|.|.|.|.|++++..+.    ...++.
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~---~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~  158 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHS---ERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVM  158 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEEEEEEE---EECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCE
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCceeeecc---eeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEE
Confidence            99999999999999999999998877765443   33456789999999999999999999998765442    234455


Q ss_pred             EEecCCeeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425        437 VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSA  472 (591)
Q Consensus       437 ~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~  472 (591)
                      +..++....+.+.++..+|.|.|+|.|.|..|....
T Consensus       159 ~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          159 KEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             ECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             EeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            555555567778899999999999999999998754

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.92  E-value=1.5e-23  Score=192.24  Aligned_cols=265  Identities=11%  Similarity=0.055  Sum_probs=163.9

Q ss_pred             EeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCC-
Q psy12425        199 TQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS-  277 (591)
Q Consensus       199 ~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~-  277 (591)
                      ....|..++|.|.....  ...+.+|     ..+...... .........|.|.++...|.|.|+|.|.|..+....+. 
T Consensus        34 ~v~~G~~v~L~C~~~~~--~~~~~W~-----k~g~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~  105 (316)
T 3vh8_G           34 VVPRGGHVTLRCHYRHR--FNNFMLY-----KEDRIHIPI-FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAP  105 (316)
T ss_dssp             EEETTSCEEEEEEBTTB--CCSEEEE-----ESSCSSSCH-HHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCC
T ss_pred             ccCCCCCEEEEEEccCC--CceEEEE-----eCCCcccee-ecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecC
Confidence            34578899999998533  1122222     111111000 00112356899999999999999999987543322222 


Q ss_pred             -CcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEE-eCCeEEEEEcce
Q psy12425        278 -ASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSV  355 (591)
Q Consensus       278 -~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~  355 (591)
                       ....+.+..  ...+|.+...+... +.+|+.+.|.|.+.+ +.+.+.|++++..+.......... ......|.|.++
T Consensus       106 s~~~~l~V~~--~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v  181 (316)
T 3vh8_G          106 SNPVVIMVTG--NHRKPSLLAHPGPL-VKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPM  181 (316)
T ss_dssp             CCCEEEEEEC--SSCCCEEEEESCSE-EETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSC
T ss_pred             CCcEEEEEec--CCCCCeEEecCCCc-cCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeecCCCceEEEEECCC
Confidence             233444432  23456666655444 789999999999954 566899999887764322111111 113447999999


Q ss_pred             ecccceEEEEEEEeCCcce-----eeeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCe
Q psy12425        356 YGVDADEYVCRAVNKGGVK-----STKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE  427 (591)
Q Consensus       356 ~~~d~g~y~c~a~n~~g~~-----~~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~  427 (591)
                      ..+|+|.|+|.|.|..|..     +....|.|..   +|.+...+.    ..+..|+.+.|.|.+. .|.+.+.|+++|.
T Consensus       182 ~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~----~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~  256 (316)
T 3vh8_G          182 MLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG----PKVQAGESVTLSCSSR-SSYDMYHLSREGG  256 (316)
T ss_dssp             CGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC----SCCCTTSCCEEEEEES-SCCSEEEEEETTS
T ss_pred             ChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC----CeecCCCcEEEEEECC-CCCcEEEEEECCC
Confidence            9999999999999998752     4446666654   233332221    2467899999999997 4788999999998


Q ss_pred             EeeeccceEEEe-cCCeeEEEEeccCCCcceeEEEEEEcCCCc-----cceEEEEEecCCC
Q psy12425        428 VIESGGHFHVET-SERHAILTIRDASNVDTAPYRVVAENDLGM-----DSAIVKIQISDRP  482 (591)
Q Consensus       428 ~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~-----~~~~~~~~v~~~p  482 (591)
                      .+.......... ......|.|.++.  |+|.|+|.|.|..+.     .+..+.|.|.++|
T Consensus       257 ~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          257 AHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             SCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             cCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence            765332221111 1234789999999  999999999998764     3666677776655

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.92  E-value=1e-22  Score=186.46  Aligned_cols=266  Identities=14%  Similarity=0.110  Sum_probs=177.7

Q ss_pred             eEEeeccccceeccccEEEEEEEcCCC-CCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425        294 EIIVPLRNANAIQNHNAQFQCTITGCP-KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       294 ~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      .+..+...+.+..|+++.|.|.+.+.+ .+.|.|++++..+.... ......+  ..|.|.++...|+|.|+|.   ..|
T Consensus         8 ~~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~--~~L~i~~v~~~d~G~Y~C~---~~g   81 (325)
T 1n26_A            8 AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP-SRWAGMG--RRLLLRSVQLHDSGNYSCY---RAG   81 (325)
T ss_dssp             CCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCC-EEEEEES--SEEEECSCCGGGCEEEEEE---SSS
T ss_pred             ccccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccc-ccccccc--ceEEecccchhhCeEeEEE---eCC
Confidence            333343444457899999999998754 78999999877653222 1222222  2799999999999999999   367


Q ss_pred             ceeeeeEEEEecCCcccCCCCcccceeec-CCCeEEEEEeeecc----CCC--eEEEeeC-CeEeeeccceEE--EecCC
Q psy12425        373 VKSTKAELIIMTAPKFNVPPRFRDTAYFD-KGENVVVKIPFTGY----PKP--KITWYRD-NEVIESGGHFHV--ETSER  442 (591)
Q Consensus       373 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~~-~g~~~~l~c~~~~~----p~~--~v~W~~~-~~~~~~~~~~~~--~~~~~  442 (591)
                      .....+.|.|..+|..+.       +... .+....+.|.....    +..  .+.+.+. +.... ......  .....
T Consensus        82 ~~~~~~~L~V~~pP~~P~-------l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~~~-~~~~~c~~~~~~~  153 (325)
T 1n26_A           82 RPAGTVHLLVDVPPEEPQ-------LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAE-DFQEPCQYSQESQ  153 (325)
T ss_dssp             SCSCEEEEEECCCCCCCC-------CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSSCE-EEEEEEEEETTTT
T ss_pred             EEeeeEEEEeccCCCCCc-------eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCCCC-cccccCCCCCCCC
Confidence            777788999988775321       1111 22222455554321    111  2333221 10000 000011  11234


Q ss_pred             eeEEEEeccC-CCcceeEEEEEEcCCCccc-eEEEEEe--cCCCCCCCCCeeeeecC--CeeEEEeeccccC-CCcceee
Q psy12425        443 HAILTIRDAS-NVDTAPYRVVAENDLGMDS-AIVKIQI--SDRPDPPQFPTVEDIGH--DSLALVWRAPIWD-GGSNITN  515 (591)
Q Consensus       443 ~~~l~i~~~~-~~~~g~y~c~a~n~~g~~~-~~~~~~v--~~~p~~p~~~~~~~~~~--~~v~l~W~~p~~~-~~~~~~~  515 (591)
                      ...+.|..+. ....|.|+|.|.|..|... ....+.+  ..+|.+|.++.+...+.  .++.|+|++|... ++..+.+
T Consensus       154 ~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~  233 (325)
T 1n26_A          154 KFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLR  233 (325)
T ss_dssp             EEEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEE
T ss_pred             CEEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEE
Confidence            5677787765 5678999999999999863 2333332  35689999988887653  5899999987642 4557899


Q ss_pred             EEEEeeeCCCCceEEec-eeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEE
Q psy12425        516 YIVEKREHPMSSWIRVG-NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT  573 (591)
Q Consensus       516 y~v~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~  573 (591)
                      |+|+|+......|.... ......+.|.+|.+++.|.|+|+|.|..|.|.+|..+..+.
T Consensus       234 Y~V~yr~~~~~~W~~~~~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~  292 (325)
T 1n26_A          234 FELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAM  292 (325)
T ss_dssp             EEEEEEETTCSCCEEEECGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEE
T ss_pred             EEEEEEeCCCCCCEEEcccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccc
Confidence            99999988878898753 34457899999999999999999999999988888776554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.92  E-value=1.1e-22  Score=181.28  Aligned_cols=244  Identities=14%  Similarity=0.132  Sum_probs=178.5

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...          ...|.|.++..+|+|.|+|.|.|.
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~----------~~~l~i~~~~~~d~G~Y~C~~~~~   70 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS----------TPSYRITSASVNDSGEYRCQRGLS   70 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEESSS
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc----------CCeEEEecCCcccCeEEEEEEecC
Confidence            3667777777889999999999999999888 99999998887543          126999999999999999999876


Q ss_pred             CcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEee-eccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEe
Q psy12425        371 GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIR  449 (591)
Q Consensus       371 ~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~  449 (591)
                      .+  +..+.+.|..++....++    ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+...        .....|.|.
T Consensus        71 ~~--s~~~~l~v~~~~~~~~~~----~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~--------~~~~~l~i~  136 (262)
T 3rjd_A           71 GR--SDPIQLEIHRGWLLLQVS----SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF--------HWNSNLTIL  136 (262)
T ss_dssp             CC--CCCEEEEEECSSEEEEES----CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------EECCCEEES
T ss_pred             Cc--cccEEEEEeccceEecCC----CeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc--------CCCCeEEEE
Confidence            54  345677777665433222    2456789999999999 78888999999999877422        235679999


Q ss_pred             ccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCC---eeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCC
Q psy12425        450 DASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFP---TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS  526 (591)
Q Consensus       450 ~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~---~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~  526 (591)
                      ++..+|.|.|+|.|.|..|..+..+.+.+..++.+|...   ......+..+.|.|........ +...+.+.|...+..
T Consensus       137 ~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~-p~~~~~~~w~~~~~~  215 (262)
T 3rjd_A          137 KTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQR-PGLQLYFSFYMGSKT  215 (262)
T ss_dssp             SCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC------EEEEEEETTEE
T ss_pred             ECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCC-CCccEEEEEEeCCcE
Confidence            999999999999999999888888888888754333211   1112356789999986422110 222333344333211


Q ss_pred             ceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCC
Q psy12425        527 SWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRS  563 (591)
Q Consensus       527 ~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~  563 (591)
                         .........+.|.++...+.+.|+|.|.|..|..
T Consensus       216 ---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          216 ---LRGRNTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             ---EEEEESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             ---ecccCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence               1122344589999999999999999999999963

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.91  E-value=1.1e-22  Score=184.18  Aligned_cols=129  Identities=12%  Similarity=0.011  Sum_probs=94.5

Q ss_pred             cCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCC
Q psy12425        256 EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP  335 (591)
Q Consensus       256 ~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~  335 (591)
                      ..|.|.|+|.|.|..+....  ....+.+...   .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++.....
T Consensus       150 ~~d~G~Y~C~a~n~~~~~~s--~~~~l~v~~~---~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~  224 (289)
T 3mjg_X          150 IFEDRSYICKTTIGDREVDS--DAYYVYRLQV---SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGR  224 (289)
T ss_dssp             CCCSSEEEEEEEETTEEEEC--CCEEEEECCC---CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSC
T ss_pred             eccCcEEEEEEEeCCceeee--eeEEEEecCC---CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCC
Confidence            46889999999986654322  2234444422   456666666667789999999999999999999999987665433


Q ss_pred             CCceEEEE-----eCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCccc
Q psy12425        336 SARHHIFA-----EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN  389 (591)
Q Consensus       336 ~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~  389 (591)
                      ........     .....+|.|.++..+|+|.|+|.|.|..|....++.|.|...|...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~  283 (289)
T 3mjg_X          225 LVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH  283 (289)
T ss_dssp             CCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred             cccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence            22211111     1134589999999999999999999999999999999998776543

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.91  E-value=1.5e-23  Score=193.37  Aligned_cols=274  Identities=14%  Similarity=0.182  Sum_probs=160.7

Q ss_pred             CceeeeecCCeEEEEEEeccC-CCceEEEEECCEEe----ec-----CCceeEEEe-----CCeEEEEEcccCCCCceEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD-QPMEVSLTKNGRVV----QS-----DDRFKFTVL-----DDYIIIFIKEIRKEDAGDY   66 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~~~~~----~~-----~~~~~~~~~-----~~~~~l~i~~~~~~d~g~Y   66 (591)
                      |..+.+.+|+++.|.|.+.+. |.+.|.|+|++..+    ..     ..++.....     ....+|.|.+++.+|+|.|
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   89 (327)
T 2wng_A           10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTY   89 (327)
T ss_dssp             CSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEE
T ss_pred             CCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEE
Confidence            678999999999999999987 88999999997532    11     112222111     3345899999999999999


Q ss_pred             EEEEEcCCeee-----EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe
Q psy12425         67 TVNLSNSSGSV-----SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST  141 (591)
Q Consensus        67 ~c~~~n~~g~~-----~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~  141 (591)
                      +|.|.|..+..     ...+.|.|...|.+|...                .|.                           
T Consensus        90 ~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~----------------~~~---------------------------  126 (327)
T 2wng_A           90 YCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS----------------GPA---------------------------  126 (327)
T ss_dssp             EEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE----------------CCS---------------------------
T ss_pred             EEEeecCCCcceeEeecCcEEEEEEecCCCceee----------------ccc---------------------------
Confidence            99999986542     234677777665443210                000                           


Q ss_pred             ecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcce
Q psy12425        142 TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRI  221 (591)
Q Consensus       142 ~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~  221 (591)
                               ..+..+....+.|.+...                    +|             ..+.++|...    +..+
T Consensus       127 ---------~~~~~g~~~~l~C~~~g~--------------------p~-------------~~~~v~W~k~----g~~l  160 (327)
T 2wng_A          127 ---------ARATPQHTVSFTCESHGF--------------------SP-------------RDITLKWFKN----GNEL  160 (327)
T ss_dssp             ---------SCBCTTCEEEEEEEEEEE--------------------BS-------------SCCEEEEEET----TEEC
T ss_pred             ---------cccCCCCEEEEEEEEeCc--------------------cC-------------CCcEEEEEEC----CEEc
Confidence                     012345566777776521                    00             0135677652    2112


Q ss_pred             EEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccc
Q psy12425        222 QGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRN  301 (591)
Q Consensus       222 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~  301 (591)
                      ..................      ...|.|.....++.|.|+|.|.|..|.....  .....+. .....+|.+...+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~------~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~--~~~~~~~-~~v~~~P~i~~~~~~  231 (327)
T 2wng_A          161 SDFQTNVDPVGESVSYSI------HSTAKVVLTREDVHSQVICEVAHVTLQGDPL--RGTANLS-ETIRVPPTLEVTQQP  231 (327)
T ss_dssp             CCEEEEEECSSCCSCEEE------EEEEEEECCTTGGGCEEEEEEECTTSCSCCE--EEEEEGG-GTBCBCCEEEEEEEC
T ss_pred             cccccccccccCCCceEE------EEEEEEechhcCcCceEEEEEeccccCCCcc--cceEEec-cccCCCCEEEEecCC
Confidence            111000000000000011      1245666667777899999999987753211  1111111 112356777665444


Q ss_pred             cceeccccEEEEEEEcCC-CCC-eeEEecCCccCCCCCceEEEEeCC-e----EEEEEcceecccceEEEEEEEeCCcce
Q psy12425        302 ANAIQNHNAQFQCTITGC-PKP-TISWLKGSREITPSARHHIFAEGD-T----YTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~-~----~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                        +.+|+.+.|.|.+.|. |.+ .+.|+++|..+.......+...+. .    ..|.|..+..+|.|.|+|.|.|..|..
T Consensus       232 --~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          232 --VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             --CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             --cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence              7799999999999995 444 899999998765432222222222 1    358889999999999999999998865


Q ss_pred             e
Q psy12425        375 S  375 (591)
Q Consensus       375 ~  375 (591)
                      .
T Consensus       310 ~  310 (327)
T 2wng_A          310 V  310 (327)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.91  E-value=2.2e-23  Score=188.80  Aligned_cols=264  Identities=12%  Similarity=0.088  Sum_probs=165.4

Q ss_pred             CeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecC--CceeeecCcccCCcEEEEEEEEcCCCCC
Q psy12425        196 PVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA--PSQINIPNLIEGRQYEFRVYAQNEAGLS  273 (591)
Q Consensus       196 ~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~~~~~y~c~a~n~~g~~  273 (591)
                      ..+....|..++|.|....     .+.+|     ..+.............  ...|.|.++...|.|.|+|.|.|..|..
T Consensus         8 ~~~~v~~G~~v~L~C~~~~-----~v~W~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   77 (289)
T 3mjg_X            8 PELVLNVSSTFVLTCSGSA-----PVVWE-----RMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLE   77 (289)
T ss_dssp             SEEECCTTCCEEEEEEESS-----CCEEE-----BTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC-----
T ss_pred             CeEEEeCCCcEEEEEeccc-----eEEEE-----CCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCC
Confidence            3455667888999998742     13322     2222211122211111  2579999999999999999999988753


Q ss_pred             CCCCCcceEEEcCCCccCCCeEEeecc--ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEE
Q psy12425        274 LPSSASNSVQIKDPMAAKAPEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI  351 (591)
Q Consensus       274 ~~s~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~  351 (591)
                      ........+.+.++   ..|.+.....  ...+.+|+.+.|.|.+. .|.+.+.|++.+........+    +... .+ 
T Consensus        78 ~~~~~~~~v~v~~p---~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~----~~~~-~~-  147 (289)
T 3mjg_X           78 TDERKRLYIFVPDP---TVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPY----DHQR-GF-  147 (289)
T ss_dssp             -CCCEEEEEECCCT---TCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCE----ETTT-EE-
T ss_pred             cCcEEeEEEEEECC---CcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceee----cCCc-Ce-
Confidence            33333444444321   1222211111  15578899999999999 677888888764222111111    1111 11 


Q ss_pred             EcceecccceEEEEEEEeCCccee-eeeEEEEec--CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeE
Q psy12425        352 INSVYGVDADEYVCRAVNKGGVKS-TKAELIIMT--APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEV  428 (591)
Q Consensus       352 i~~~~~~d~g~y~c~a~n~~g~~~-~~~~l~v~~--~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~  428 (591)
                         +...|+|.|+|.|.|..+... ....+.+..  +|.+...+   ....+..|+.+.|.|.+.|.|.+.+.|++++..
T Consensus       148 ---~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~---~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~  221 (289)
T 3mjg_X          148 ---SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNA---VQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE  221 (289)
T ss_dssp             ---EECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEE---SCSEEETTSCEEEEEEEESCSSBEEEEECTTSS
T ss_pred             ---eeeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeC---CcceeEcCCCEEEEEEECCCCCcceEEEcCCcc
Confidence               146799999999998776553 345566655  34433322   224578899999999999999999999987764


Q ss_pred             eeeccceEEEe-----cCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCC
Q psy12425        429 IESGGHFHVET-----SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP  485 (591)
Q Consensus       429 ~~~~~~~~~~~-----~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p  485 (591)
                      ...........     ......|.|.++..+|+|.|+|.|.|..|....++.|.+...|...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~  283 (289)
T 3mjg_X          222 SGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH  283 (289)
T ss_dssp             SSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred             CCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence            43221111111     2246889999999999999999999999999999999998776543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.91  E-value=8.4e-24  Score=191.95  Aligned_cols=261  Identities=15%  Similarity=0.159  Sum_probs=177.2

Q ss_pred             EeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCC
Q psy12425        199 TQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA  278 (591)
Q Consensus       199 ~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~  278 (591)
                      ....|..++|.|....     .+.+|     ......+. . ........|.|.++...|.|.|+|.+.|..|..   ..
T Consensus        15 ~v~~G~~v~L~C~~~~-----~v~W~-----~~~~~~~~-~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~---~~   79 (292)
T 4dkd_C           15 VVKPGATVTLRCVGNG-----SVEWD-----GPPSPHWT-L-YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGG---SA   79 (292)
T ss_dssp             EECTTCCEEEEEECSS-----CCCBC-----CCCCSSCE-E-CCBTTEEEEEESSCCGGGCSCEEECCCC----C---CE
T ss_pred             EEcCCCcEEEEEcCCC-----ceEEc-----cCCCCceE-E-eccCceEEEEEcccccccCEEEEEEEccCCCCc---ce
Confidence            4557888999998742     13322     11221211 1 111234589999999999999999999877643   23


Q ss_pred             cceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCC--CeeEEecC-CccCCCCCceEEEEeCCeEEEEEcce
Q psy12425        279 SNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK--PTISWLKG-SREITPSARHHIFAEGDTYTLIINSV  355 (591)
Q Consensus       279 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~  355 (591)
                      ...+.+..    .+..+...+....+.+|+.+.|.|.+.+ |.  +.+.|+++ +..+....++.+..++   .|.|.++
T Consensus        80 ~~~l~V~~----~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~  151 (292)
T 4dkd_C           80 AIHLYVKD----PARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWH---GFTIHRA  151 (292)
T ss_dssp             EECCEECC----SSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSS---CCEETTC
T ss_pred             EEEEEEcC----ccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCc---eEEECCC
Confidence            44455542    1222344455677889999999999998 54  78999987 5555544454443333   3999999


Q ss_pred             ecccceEEEEEEEeCCcce-eeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeeccCC-CeEEEeeCCeEe
Q psy12425        356 YGVDADEYVCRAVNKGGVK-STKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK-PKITWYRDNEVI  429 (591)
Q Consensus       356 ~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~-~~v~W~~~~~~~  429 (591)
                      ..+|+|.|+|.|.|..|.. +....|.|..    +|.+...+.   ...+..|+.+.|.|.+.+.|. +.+.|++++..+
T Consensus       152 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~---~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~  228 (292)
T 4dkd_C          152 KFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPA---ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKL  228 (292)
T ss_dssp             CGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESS---CBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCC
T ss_pred             CHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCC---ceeEecCCCEEEEEEecCCCCceEEEEeCCCccc
Confidence            9999999999999987765 4478888886    666554432   234468999999999998765 578899988766


Q ss_pred             eeccceEEEec--CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCC
Q psy12425        430 ESGGHFHVETS--ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP  485 (591)
Q Consensus       430 ~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p  485 (591)
                      .......+...  .....|.|.++..+|.|.|+|.|.|..|..+..+.|.|.....++
T Consensus       229 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~  286 (292)
T 4dkd_C          229 AIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS  286 (292)
T ss_dssp             CCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-------
T ss_pred             ccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence            43332222211  134689999999999999999999999999999999998765443

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.91  E-value=7.5e-25  Score=203.00  Aligned_cols=258  Identities=15%  Similarity=0.253  Sum_probs=115.0

Q ss_pred             ccccceeccccEEEEEEEcCC-CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeee
Q psy12425        299 LRNANAIQNHNAQFQCTITGC-PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK  377 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~  377 (591)
                      +....+.+|+.+.|.|.+.+. |.+.+.|++++..+....++.+    ...+|.|.+++.+|+|.|+|.|.|. |.....
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~   89 (334)
T 1ry7_B           15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCH   89 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe----ccceEEEeecccccCEEEEEEEEeC-CeEEEE
Confidence            567788999999999999886 6789999999988876655544    2237999999999999999999998 777777


Q ss_pred             eEEEEecCCc----------------------ccCCCCcc-cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccc
Q psy12425        378 AELIIMTAPK----------------------FNVPPRFR-DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH  434 (591)
Q Consensus       378 ~~l~v~~~p~----------------------~~~~~~~~-~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~  434 (591)
                      ..|.|...|.                      +..+.... ....+..|+.+.|.|.+.|.|.+.+.|++++..+.....
T Consensus        90 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~  169 (334)
T 1ry7_B           90 FSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR  169 (334)
T ss_dssp             -----------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSS
T ss_pred             EEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccc
Confidence            7777775442                      22111111 124577899999999999999999999999988765443


Q ss_pred             e-EEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCC-CCCCC-----eeeeecCCeeEEEeecccc
Q psy12425        435 F-HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD-PPQFP-----TVEDIGHDSLALVWRAPIW  507 (591)
Q Consensus       435 ~-~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~-~p~~~-----~~~~~~~~~v~l~W~~p~~  507 (591)
                      + .+........|.|.++...|.|.|+|.|.|..|.....+.+.|...+. +|...     ......+..+.|.|.... 
T Consensus       170 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g-  248 (334)
T 1ry7_B          170 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYS-  248 (334)
T ss_dssp             TTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBC-
T ss_pred             ccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEec-
Confidence            2 122334567899999999999999999999999988888888876432 22211     122345677999998632 


Q ss_pred             CCCcceeeEEEEeee--CC------CCce-EEec-------eeeeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425        508 DGGSNITNYIVEKRE--HP------MSSW-IRVG-------NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP  565 (591)
Q Consensus       508 ~~~~~~~~y~v~~~~--~~------~~~~-~~~~-------~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~  565 (591)
                         .+...+.+....  .+      .... ....       ......|.|.++...+.+.|+|.|.|.+|....
T Consensus       249 ---~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  319 (334)
T 1ry7_B          249 ---DAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH  319 (334)
T ss_dssp             ---SSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEE
T ss_pred             ---CCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEE
Confidence               222233333210  10      0000 0000       111237999999999999999999999997544

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.91  E-value=5.2e-23  Score=190.39  Aligned_cols=224  Identities=13%  Similarity=0.140  Sum_probs=162.9

Q ss_pred             CCceeeecCcccCCcEEEEEEE-EcCCCCCCCCCCcceEEEcCCCccCCCeEE--eeccccceecc---ccEEEEEE-Ec
Q psy12425        245 APSQINIPNLIEGRQYEFRVYA-QNEAGLSLPSSASNSVQIKDPMAAKAPEII--VPLRNANAIQN---HNAQFQCT-IT  317 (591)
Q Consensus       245 ~~~~~~i~~l~~~~~~~y~c~a-~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~g---~~~~l~c~-~~  317 (591)
                      ....|.|.++...|.|.|+|.+ .+..|..   .....+.+.     .+|.+.  .......+.+|   +.+.|.|. +.
T Consensus        90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~---~~~~~l~V~-----~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~  161 (331)
T 3u83_A           90 TDGTIRLSRLELEDEGVYICEFATFPTGNR---ESQLNLTVM-----AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSAN  161 (331)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEEETTEEE---EEEEEEEEE-----BCCEEEEEECSSCEEECTTCCCCEEEEEEEEEE
T ss_pred             CCceEEEcccCcccCcEEEEEEEecCCCcc---EEEEEEEEe-----cCCcceeecCCCceeecCCCccceEEEEEEecC
Confidence            3467999999999999999985 4444432   233445544     344442  23445556777   77999998 88


Q ss_pred             CCCCCeeEEecCCccCCCCCceEEEEeCC----eEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCC
Q psy12425        318 GCPKPTISWLKGSREITPSARHHIFAEGD----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR  393 (591)
Q Consensus       318 ~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~  393 (591)
                      +.|.+.+.|++++.....  .......+.    ...|.|.++..+|.|.|+|.|.|..|.....+.|.|..+|.+...+.
T Consensus       162 ~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~  239 (331)
T 3u83_A          162 GKPPSVVSWETRLKGEAE--YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGF  239 (331)
T ss_dssp             EBSCCEEEEEESSCCEEE--EEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECC
T ss_pred             CcCCceEEEEcCCCCccc--cceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecC
Confidence            999999999986322110  001111111    13688899999999999999999999888889999988887654332


Q ss_pred             cccceeecCCCeEEEEEeeeccCCCe-EEEeeCCeEeeeccceEEEecCCeeEEEEe-ccCCCcceeEEEEEEcCCCccc
Q psy12425        394 FRDTAYFDKGENVVVKIPFTGYPKPK-ITWYRDNEVIESGGHFHVETSERHAILTIR-DASNVDTAPYRVVAENDLGMDS  471 (591)
Q Consensus       394 ~~~~~~~~~g~~~~l~c~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~~g~y~c~a~n~~g~~~  471 (591)
                        ....+..|+.+.|.|.+.|.|.|. +.|++++..+....  .+    ....|.|. ++..+|.|.|+|.|.|..|..+
T Consensus       240 --~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~--~~----~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~  311 (331)
T 3u83_A          240 --DGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV--EA----QNRTLFFKGPINYSLAGTYICEATNPIGTRS  311 (331)
T ss_dssp             --CSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--EE----ETTEEEECSCCCGGGCEEEEEEEEETTEEEE
T ss_pred             --CCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc--ee----cCcEEEEeCCCccccCeEEEEEEEeccccce
Confidence              233467899999999999999998 99999998775432  11    24579999 8999999999999999999999


Q ss_pred             eEEEEEecCCCCCCC
Q psy12425        472 AIVKIQISDRPDPPQ  486 (591)
Q Consensus       472 ~~~~~~v~~~p~~p~  486 (591)
                      ..+.|.|...+....
T Consensus       312 ~~~~l~V~~~~~~~~  326 (331)
T 3u83_A          312 GQVEVNITEAAALEH  326 (331)
T ss_dssp             EEEEECCBC------
T ss_pred             EEEEEEEeccchhhh
Confidence            999999988775443

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.91  E-value=9.5e-24  Score=178.39  Aligned_cols=185  Identities=30%  Similarity=0.494  Sum_probs=152.0

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCC-CCceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      +.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+..++.  +|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ--LLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGT--EEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCcc--EEEEcCCCcccCeEEEEEEE
Confidence            3567777777778899999999999999999999999999888765 34555544443  79999999999999999999


Q ss_pred             eCCcce-eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEE
Q psy12425        369 NKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILT  447 (591)
Q Consensus       369 n~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~  447 (591)
                      |..|.. .....+.|..+|.+...+.   ...+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+..   ...|.
T Consensus        83 ~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~---~~~L~  156 (192)
T 2iep_A           83 NGVGGAVESCGALQVKMKPKITRPPI---NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE---SGSLR  156 (192)
T ss_dssp             CSSSCCEEEEEEEEEEEEEEEEECCC---CEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECT---TSCEE
T ss_pred             cCCCceeEeEEEEEEEeCCccccCCc---ceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEec---CCcEE
Confidence            998874 5667888888887765442   4567889999999999999999999999999887766655442   34799


Q ss_pred             EeccCCCcceeEEEEEEcCCCcc-ceEEEEEecCCC
Q psy12425        448 IRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRP  482 (591)
Q Consensus       448 i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p  482 (591)
                      |.++..+|.|.|+|.|.|..|.. +..+.|.|..+|
T Consensus       157 i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          157 IHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            99999999999999999999988 567888887654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.91  E-value=5.1e-23  Score=189.75  Aligned_cols=217  Identities=17%  Similarity=0.218  Sum_probs=141.4

Q ss_pred             CCceeeecCcccCCcEEEEEEEEcCCCCCCC--CCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCC
Q psy12425        245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLP--SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP  322 (591)
Q Consensus       245 ~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~--s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~  322 (591)
                      ....|.|.++...|.|.|+|.|.|..+....  ......+.+..+  +.+|.+..+  ...+.+|+.+.|.|.+.+.|.+
T Consensus        72 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~--p~~p~i~~~--~~~~~~g~~~~l~C~~~g~p~~  147 (327)
T 2wng_A           72 MDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAK--PSAPVVSGP--AARATPQHTVSFTCESHGFSPR  147 (327)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBC--CCCCEEECC--SSCBCTTCEEEEEEEEEEEBSS
T ss_pred             ceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEec--CCCceeecc--ccccCCCCEEEEEEEEeCccCC
Confidence            3457999999999999999999997553111  112234444422  344555422  3567899999999999998766


Q ss_pred             --eeEEecCCccCCCCCceEEEE-eCC----eEEEEEcceecccceEEEEEEEeCCcce---eeeeEE--EEecCCcccC
Q psy12425        323 --TISWLKGSREITPSARHHIFA-EGD----TYTLIINSVYGVDADEYVCRAVNKGGVK---STKAEL--IIMTAPKFNV  390 (591)
Q Consensus       323 --~v~W~~~~~~~~~~~~~~~~~-~~~----~~~l~i~~~~~~d~g~y~c~a~n~~g~~---~~~~~l--~v~~~p~~~~  390 (591)
                        .+.|++++..+.......... .++    ...|.|.....+|.|.|+|.|.|..+..   .....+  .+..+|.+..
T Consensus       148 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~  227 (327)
T 2wng_A          148 DITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEV  227 (327)
T ss_dssp             CCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEE
T ss_pred             CcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEE
Confidence              899999998876543211111 111    1247777777777899999999988763   222222  2344555443


Q ss_pred             CCCcccceeecCCCeEEEEEeeeccC-CC-eEEEeeCCeEeeeccceEEEecCC-----eeEEEEeccCCCcceeEEEEE
Q psy12425        391 PPRFRDTAYFDKGENVVVKIPFTGYP-KP-KITWYRDNEVIESGGHFHVETSER-----HAILTIRDASNVDTAPYRVVA  463 (591)
Q Consensus       391 ~~~~~~~~~~~~g~~~~l~c~~~~~p-~~-~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a  463 (591)
                      .+.     .+..|+.+.|.|.+.|.+ ++ .+.|+++|..+.......+....+     ...|.|..+..+|.|.|+|.|
T Consensus       228 ~~~-----~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a  302 (327)
T 2wng_A          228 TQQ-----PVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQV  302 (327)
T ss_dssp             EEE-----CCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEE
T ss_pred             ecC-----CcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEE
Confidence            221     157899999999999954 44 899999999886543222222222     256888999999999999999


Q ss_pred             EcCCCcc
Q psy12425        464 ENDLGMD  470 (591)
Q Consensus       464 ~n~~g~~  470 (591)
                      .|..|..
T Consensus       303 ~N~~~~~  309 (327)
T 2wng_A          303 EHDGQPA  309 (327)
T ss_dssp             EETTCCC
T ss_pred             EeCCCCC
Confidence            9999875

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.91  E-value=8.5e-23  Score=172.78  Aligned_cols=177  Identities=15%  Similarity=0.257  Sum_probs=146.4

Q ss_pred             CCeEEeeccccceeccccEEEEEEEc-CCCCCeeEEecCCccCCCCC--ceEEEEeCC-------eEEEEEcceecccce
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSA--RHHIFAEGD-------TYTLIINSVYGVDAD  361 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~-------~~~l~i~~~~~~d~g  361 (591)
                      +|.+...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+....  ++.+.....       ..+|.|.++...|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            57778888888999999999999999 99999999999999887663  333332222       458999999999999


Q ss_pred             EEEEEEEeCCcceee-eeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC-eEEEeeCCeEeeeccceEEEe
Q psy12425        362 EYVCRAVNKGGVKST-KAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVET  439 (591)
Q Consensus       362 ~y~c~a~n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~  439 (591)
                      .|+|.|.|..|.... .+.|.|..+|.+...+.   ...+..|+.+.|.|.+.|.|.| .+.|++++..+......    
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~----  154 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPE---DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----  154 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCSCEEEECCC---CEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----
T ss_pred             EEEEEEEeCCCceecccEEEEEecCCeEEcCCC---cEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----
Confidence            999999998877644 48899988887765443   3567889999999999999999 99999999887654432    


Q ss_pred             cCCeeEEEEeccCCCcceeEEEEEEcCCCccc-eEEEEEe
Q psy12425        440 SERHAILTIRDASNVDTAPYRVVAENDLGMDS-AIVKIQI  478 (591)
Q Consensus       440 ~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~-~~~~~~v  478 (591)
                       .....|.|.++.  |+|.|+|.|.|..|... ..+.|.|
T Consensus       155 -~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 -GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             -SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence             457889999987  78999999999999884 7888888

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.91  E-value=2.8e-22  Score=169.58  Aligned_cols=180  Identities=24%  Similarity=0.438  Sum_probs=146.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCC--ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.+.|+|+|..+....  ++++...+....|.|.+++.+|+|.|+|.+.|..|....
T Consensus        12 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~   91 (194)
T 2a38_A           12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATS   91 (194)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeE
Confidence            577899999999999999999999999999999887663  667777777889999999999999999999988776555


Q ss_pred             EEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEE
Q psy12425         80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY  159 (591)
Q Consensus        80 ~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  159 (591)
                      .+.|.|...+                                                                      
T Consensus        92 ~~~l~v~~~~----------------------------------------------------------------------  101 (194)
T 2a38_A           92 TAELLVKAET----------------------------------------------------------------------  101 (194)
T ss_dssp             EEEEEEECCC----------------------------------------------------------------------
T ss_pred             EEEEEEccCC----------------------------------------------------------------------
Confidence            4444443210                                                                      


Q ss_pred             EEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEE
Q psy12425        160 LFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV  239 (591)
Q Consensus       160 ~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~  239 (591)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (194)
T 2a38_A          102 --------------------------------------------------------------------------------  101 (194)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC
Q psy12425        240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC  319 (591)
Q Consensus       240 ~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~  319 (591)
                                                                         .+|.+...+....+..|+.+.|.|.+.+.
T Consensus       102 ---------------------------------------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~  130 (194)
T 2a38_A          102 ---------------------------------------------------APPNFVQRLQSMTVRQGSQVRLQVRVTGI  130 (194)
T ss_dssp             ---------------------------------------------------EEEEEEECCCCEEECTTEEEEEEEEEEEE
T ss_pred             ---------------------------------------------------CCCEEEeCCccEEEcCCCEEEEEEEEEEe
Confidence                                                               01111111122335677889999999999


Q ss_pred             CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       320 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      |.+.+.|++++..+....++.+..++...+|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus       131 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          131 PTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             SCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            999999999999998888888888888889999999999999999999999999888777776

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.91  E-value=1.2e-22  Score=187.87  Aligned_cols=278  Identities=16%  Similarity=0.206  Sum_probs=176.0

Q ss_pred             CCceeeeecCCeEEEEEEeccC----CCceEEEEECC--E-------------Eee--cCCceeEE-EeCCeEEEEEccc
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGD----QPMEVSLTKNG--R-------------VVQ--SDDRFKFT-VLDDYIIIFIKEI   58 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~----p~~~v~W~~~~--~-------------~~~--~~~~~~~~-~~~~~~~l~i~~~   58 (591)
                      +|.++.+.+|+++.|.|.+.+.    +.+.+.|+|++  .             .+.  ...|+.+. ......+|.|.++
T Consensus        20 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   99 (331)
T 3u83_A           20 VNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRL   99 (331)
T ss_dssp             -CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSC
T ss_pred             cCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEccc
Confidence            4678999999999999999876    45689999954  1             111  12333332 1223457999999


Q ss_pred             CCCCceEEEEE-EEcCCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceE
Q psy12425         59 RKEDAGDYTVN-LSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI  137 (591)
Q Consensus        59 ~~~d~g~Y~c~-~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~  137 (591)
                      +.+|+|.|+|. +.+..|.....+.|.|...|.....               -.++                        
T Consensus       100 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~---------------~~~~------------------------  140 (331)
T 3u83_A          100 ELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIE---------------GTQA------------------------  140 (331)
T ss_dssp             CGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEE---------------ECSS------------------------
T ss_pred             CcccCcEEEEEEEecCCCccEEEEEEEEecCCcceee---------------cCCC------------------------
Confidence            99999999998 5666787788888888875532110               0000                        


Q ss_pred             EEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCC
Q psy12425        138 CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG  217 (591)
Q Consensus       138 ~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~  217 (591)
                               .+.+..=..+....+.|.+...                                  .....++|....  .
T Consensus       141 ---------~~~~~~g~~~~~~~l~C~~~~~----------------------------------~p~~~i~W~~~~--~  175 (331)
T 3u83_A          141 ---------VLRAKKGQDDKVLVATCTSANG----------------------------------KPPSVVSWETRL--K  175 (331)
T ss_dssp             ---------CEEECTTCCCCEEEEEEEEEEE----------------------------------BSCCEEEEEESS--C
T ss_pred             ---------ceeecCCCccceEEEEEEecCC----------------------------------cCCceEEEEcCC--C
Confidence                     0000000112445566653211                                  001346776521  1


Q ss_pred             CcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEe
Q psy12425        218 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIV  297 (591)
Q Consensus       218 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~  297 (591)
                      + .......  . ..... ..      ....|.|..+...|.|.|+|.|.|..|...   ....+.+.     .+|.+..
T Consensus       176 ~-~~~~~~~--~-~~~~~-~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~---~~~~l~V~-----~~P~~~~  236 (331)
T 3u83_A          176 G-EAEYQEI--R-NPNGT-VT------VISRYRLVPSREAHQQSLACIVNYHMDRFK---ESLTLNVQ-----YEPEVTI  236 (331)
T ss_dssp             C-EEEEEEE--E-CTTSC-EE------EEEEEEECCCGGGTTCEEEEEEEETTEEEE---EEEECCEE-----EEEEEEE
T ss_pred             C-cccccee--E-CCCCc-EE------EEEEEEEEeccccCCCEEEEEEecCCCcce---eeEEEEEe-----cCCeEEE
Confidence            1 1110000  0 01111 11      113578888899999999999999876432   22223332     3455543


Q ss_pred             -eccccceeccccEEEEEEEcCCCCCe-eEEecCCccCCCCCceEEEEeCCeEEEEEc-ceecccceEEEEEEEeCCcce
Q psy12425        298 -PLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIIN-SVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       298 -~~~~~~~~~g~~~~l~c~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~y~c~a~n~~g~~  374 (591)
                       ......+.+|+.+.|.|.+.+.|.+. +.|++++..+.....   ...+   +|.|. ++..+|+|.|+|.|.|..|..
T Consensus       237 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~---~~~~---~L~i~~~v~~~d~G~Y~C~a~N~~G~~  310 (331)
T 3u83_A          237 EGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVE---AQNR---TLFFKGPINYSLAGTYICEATNPIGTR  310 (331)
T ss_dssp             ECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEE---EETT---EEEECSCCCGGGCEEEEEEEEETTEEE
T ss_pred             ecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccce---ecCc---EEEEeCCCccccCeEEEEEEEeccccc
Confidence             33445578899999999999999998 999999888764421   1222   79999 899999999999999999999


Q ss_pred             eeeeEEEEecCCc
Q psy12425        375 STKAELIIMTAPK  387 (591)
Q Consensus       375 ~~~~~l~v~~~p~  387 (591)
                      ...+.|.|...+.
T Consensus       311 ~~~~~l~V~~~~~  323 (331)
T 3u83_A          311 SGQVEVNITEAAA  323 (331)
T ss_dssp             EEEEEECCBC---
T ss_pred             eEEEEEEEeccch
Confidence            8888888877554

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.90  E-value=3.3e-22  Score=171.89  Aligned_cols=174  Identities=18%  Similarity=0.274  Sum_probs=145.7

Q ss_pred             eccccEEEEEEEcCC-CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        305 IQNHNAQFQCTITGC-PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       305 ~~g~~~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      ..++.+.|.|.+.+. |.+.+.|++++..+....++.+...+...+|.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            367788999999885 5889999999999988888888888888899999999999999999999988877766666543


Q ss_pred             c--------------------CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEec-CC
Q psy12425        384 T--------------------APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS-ER  442 (591)
Q Consensus       384 ~--------------------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~  442 (591)
                      .                    .|.+...  ......+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~  172 (212)
T 2r15_A           95 AYDEAYAEFQRLKQAAIAEKNRARVLGG--LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGR  172 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCEEEEB--CCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTT
T ss_pred             eccchhhhccccCcccccccCCCccccc--CCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCC
Confidence            2                    2222111  12345678999999999999999999999999999988777777665 56


Q ss_pred             eeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       443 ~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      ...|.|.++...|.|.|+|.|.|..|.....+.|.|..
T Consensus       173 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          173 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence            78999999999999999999999999998888888763

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.90  E-value=4.6e-22  Score=167.75  Aligned_cols=181  Identities=20%  Similarity=0.313  Sum_probs=143.0

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCC-CCeeEEec-CCccCCC-CCceEEEE-eCCeEEEEEcceecccceEEEEEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCP-KPTISWLK-GSREITP-SARHHIFA-EGDTYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~-~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      ++.+...+.+..+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+.. ..++.+.. .+...+|.|.++..+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            45566677778899999999999999977 88999999 7777663 34555443 356779999999999999999999


Q ss_pred             EeCC-cceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeecc--ceEEEecCCee
Q psy12425        368 VNKG-GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG--HFHVETSERHA  444 (591)
Q Consensus       368 ~n~~-g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~  444 (591)
                      .|.. +.....+.|.|..+|.+...+   ....+..|+.+.|.|.+.|.|.+.+.|++++..+....  ++.+.   ...
T Consensus        82 ~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~  155 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQKLMFKNAP---TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL---SNN  155 (191)
T ss_dssp             EETTTEEEEEEEEEEEECCSEEEECC---SSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC---TTS
T ss_pred             EcCCCcceEEEEEEEeecCceEecCC---CcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe---cCC
Confidence            9998 455677888888888776544   23457889999999999999999999999998886433  33332   234


Q ss_pred             EEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       445 ~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      .|.|.++...|.|.|+|.|.|..|.......+.+
T Consensus       156 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             eEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            7999999999999999999999876654444443

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.90  E-value=2.4e-23  Score=193.20  Aligned_cols=270  Identities=13%  Similarity=0.190  Sum_probs=186.7

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEc-------CCCCCeeEEecCCcc--CCCCCceEEEEeCCeEEEEEcceecccce
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTIT-------GCPKPTISWLKGSRE--ITPSARHHIFAEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~-------~~p~~~v~W~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  361 (591)
                      ..|.+...+.+..+.+|+.+.|.|.+.       +.|.+.+.|++++..  +.......+...+.  +|.|.++...|+|
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G   94 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDSG   94 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTCCE
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCcccCE
Confidence            568888888889999999999999998       899999999999877  33332333333333  7999999999999


Q ss_pred             EEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEe-----eeccCCCeEEEeeCCeEeeec-cce
Q psy12425        362 EYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIP-----FTGYPKPKITWYRDNEVIESG-GHF  435 (591)
Q Consensus       362 ~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~-----~~~~p~~~v~W~~~~~~~~~~-~~~  435 (591)
                      .|+|.|.|..|.......|.|...+....+ .......+..|+.+.|.|.     +.+.|.+.+.|++++..+... .++
T Consensus        95 ~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~  173 (339)
T 3o4o_C           95 TYVCTTRNASYCDKMSIELRVFENTDAFLP-FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF  173 (339)
T ss_dssp             EEECCEEETTEEEEEEEEEEEECSCGGGHH-HHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSE
T ss_pred             EEEEEEECCcceEEEEEEEEEEcCCCcccc-ccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCcee
Confidence            999999999998888899999887654311 1112245788999999999     789999999999999888654 333


Q ss_pred             EEEecCCeeEEEEeccCCCcceeEEEEEEcCCCc----cceEEEEEecCCC--CCCCCCe----eeeecCCeeEEEeecc
Q psy12425        436 HVETSERHAILTIRDASNVDTAPYRVVAENDLGM----DSAIVKIQISDRP--DPPQFPT----VEDIGHDSLALVWRAP  505 (591)
Q Consensus       436 ~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~----~~~~~~~~v~~~p--~~p~~~~----~~~~~~~~v~l~W~~p  505 (591)
                      .+  ......|.|.++...|.|.|+|.|.|..|.    .+..+.|.|...+  .+|..+.    +....+..+.|.|...
T Consensus       174 ~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~  251 (339)
T 3o4o_C          174 LS--VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVF  251 (339)
T ss_dssp             EE--CTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEE
T ss_pred             EE--cCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEE
Confidence            32  233468999999999999999999999884    4566777776543  1221111    1112355677777751


Q ss_pred             ccCCCcc-eeeEEEEeeeCC------CCceEE-----e-cee---eeeEEEEcCcccCce-EEEEEEEEcCCcCCCCC
Q psy12425        506 IWDGGSN-ITNYIVEKREHP------MSSWIR-----V-GNT---RFTTMAITGLSPGHQ-YEFRVYAENVYGRSDPS  566 (591)
Q Consensus       506 ~~~~~~~-~~~y~v~~~~~~------~~~~~~-----~-~~~---~~~~~~i~~l~~~~~-Y~~~v~A~n~~G~~~~s  566 (591)
                      .. .+.+ ...+.+......      ......     . .++   -...|.|.++...+. +.|+|.|.|.+|.....
T Consensus       252 ~~-~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~  328 (339)
T 3o4o_C          252 LG-TGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR  328 (339)
T ss_dssp             ES-SSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCB
T ss_pred             CC-CCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEE
Confidence            10 1112 122222211100      000111     0 111   122799999999997 99999999999975544

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.90  E-value=3.2e-22  Score=167.21  Aligned_cols=175  Identities=19%  Similarity=0.347  Sum_probs=141.1

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCC--eEEEEEcceecccceEEEEEEEe
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD--TYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      +|.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+...+.  ..+|.|.++..+|+|.|+|.+.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            3556666677788999999999999999999999999999887776665554443  35899999999999999999999


Q ss_pred             CCcce-eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC-eEEEeeCCeEeeeccceEEEecCCeeEEE
Q psy12425        370 KGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILT  447 (591)
Q Consensus       370 ~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~  447 (591)
                      ..|.. +....|.|..+|.+...+.   ...+..|+.+.|.|.+.|.|.| .+.|++++..+.....       ....|.
T Consensus        82 ~~~~~~~~~~~l~V~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~  151 (182)
T 1rhf_A           82 GGETEISQPVWLTVEGVPFFTVEPK---DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SPSVLN  151 (182)
T ss_dssp             CTTCEECCCEEEEEECSCEEEECCC---CEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------SSEEEE
T ss_pred             CCCcEEEEEEEEEEecCCeEEecCc---ceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------CceEEE
Confidence            87754 5678899999888766543   3567889999999999999999 9999999988754321       578899


Q ss_pred             EeccCCCcceeEEEEEEcCCCccc-eEEEEEe
Q psy12425        448 IRDASNVDTAPYRVVAENDLGMDS-AIVKIQI  478 (591)
Q Consensus       448 i~~~~~~~~g~y~c~a~n~~g~~~-~~~~~~v  478 (591)
                      |.++  +|+|.|+|.|.|..|... ..+.|.|
T Consensus       152 i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          152 VTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             ECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             Eecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            9888  588999999999999873 4777665

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.90  E-value=3.2e-22  Score=186.49  Aligned_cols=263  Identities=15%  Similarity=0.146  Sum_probs=160.5

Q ss_pred             ccccceeccccEEEEEEEcCCCC-----------CeeEEecCCccCCC-------CCceEEEEeCCeEEEEEcceecccc
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPK-----------PTISWLKGSREITP-------SARHHIFAEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~-----------~~v~W~~~~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~  360 (591)
                      ..++.+.+|+.+.|.|.+.+.|.           +.+.|++++.....       .....+...+.  +|.|.++..+|+
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~   91 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD--VLWFRPTLLNDT   91 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETT--EEEESSCCGGGC
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCC--EEEEccCChhhC
Confidence            45677899999999999998765           89999998742110       11222333333  799999999999


Q ss_pred             eEEEEEEEeCCcceeeeeEEEEecCCcccCCCC-cccceeecCCCeEEEEEee-----eccCCCeEEEeeCCeEeeeccc
Q psy12425        361 DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPR-FRDTAYFDKGENVVVKIPF-----TGYPKPKITWYRDNEVIESGGH  434 (591)
Q Consensus       361 g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~-~~~~~~~~~g~~~~l~c~~-----~~~p~~~v~W~~~~~~~~~~~~  434 (591)
                      |.|+|.|.|..|.......|.|..+|....+.. ......+..|+.+.|.|.+     .|.|.+.+.|++++..+.....
T Consensus        92 G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~  171 (349)
T 4dep_C           92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNN  171 (349)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSS
T ss_pred             EEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccc
Confidence            999999999999888889999988765443321 1223467889999999985     7889999999999998854332


Q ss_pred             eEEEecCCeeEEEEeccCCCcceeEEEEEEcCC-Ccc---ceEEEEEecCCCC---CCCCC-----ee-eeecCCeeEEE
Q psy12425        435 FHVETSERHAILTIRDASNVDTAPYRVVAENDL-GMD---SAIVKIQISDRPD---PPQFP-----TV-EDIGHDSLALV  501 (591)
Q Consensus       435 ~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~-g~~---~~~~~~~v~~~p~---~p~~~-----~~-~~~~~~~v~l~  501 (591)
                      +  ..  ....|.|.++..+|+|.|+|.|.|.. |..   +..+.|.+..++.   +|...     .+ ....+..+.|.
T Consensus       172 ~--~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~  247 (349)
T 4dep_C          172 V--IP--EGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIP  247 (349)
T ss_dssp             E--EE--ETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCC
T ss_pred             e--ee--cCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEE
Confidence            2  22  23689999999999999999999987 554   5677777765432   22111     10 11234456666


Q ss_pred             eeccccCCCcceeeEEEEeeeCCC----CceE----E-----eceeeeeEEEEcCcccCce-EEEEEEEEcCCcCCCCCC
Q psy12425        502 WRAPIWDGGSNITNYIVEKREHPM----SSWI----R-----VGNTRFTTMAITGLSPGHQ-YEFRVYAENVYGRSDPST  567 (591)
Q Consensus       502 W~~p~~~~~~~~~~y~v~~~~~~~----~~~~----~-----~~~~~~~~~~i~~l~~~~~-Y~~~v~A~n~~G~~~~s~  567 (591)
                      |.......+.+...+.+.......    ....    .     ........+.|.++...+. +.|+|.|.|..|....+.
T Consensus       248 C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~  327 (349)
T 4dep_C          248 CTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAA  327 (349)
T ss_dssp             EEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEEC
T ss_pred             EEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEE
Confidence            664321112122222222111000    0000    0     0112234589999999999 999999999999765543

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.90  E-value=7.5e-24  Score=219.14  Aligned_cols=373  Identities=14%  Similarity=0.128  Sum_probs=212.2

Q ss_pred             cceEEecCceEEEEecCCCCCCCcceeeEEEEEEec--------------CCCceEEEEeec----------CcceEEEc
Q psy12425         96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI--------------SMPHWICISTTC----------HDTTFIVQ  151 (591)
Q Consensus        96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~--------------~~~~~~~~~~~~----------~~~~~~i~  151 (591)
                      +.+......++.|+|.+|...++..+.+|.|.++..              +...|.......          ....+.+.
T Consensus       475 l~v~~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~  554 (897)
T 2dtg_E          475 FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMR  554 (897)
T ss_dssp             CSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEEC
T ss_pred             EEEEEEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccccceEeC
Confidence            567888999999999998866777899999988765              234565432211          25779999


Q ss_pred             CCcCCcEEEEEEEE-EccCCCCC-CCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEee
Q psy12425        152 GLTEGQEYLFHVMA-VNENGMGP-PLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH  229 (591)
Q Consensus       152 ~l~~~~~y~~~~~a-~n~~g~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~  229 (591)
                      +|.|++.|.|+|.| .|..|.+. .+..+..+...+...+|.+|..+.+.....+++.|+|.+|..+++ .+.+|.|.++
T Consensus       555 ~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG-~I~~Y~V~~~  633 (897)
T 2dtg_E          555 GLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWE  633 (897)
T ss_dssp             SCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEECSSSCEEEEEECCCCSSS-SCSEEECCEE
T ss_pred             CCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEeCCCCEEEEEEeCCCCCCC-CeeEEEEEEE
Confidence            99999999999999 89888732 122334555666667888888888888889999999999865554 5899999887


Q ss_pred             ecCCCccEEEEeeecCCceee-ecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccc
Q psy12425        230 EVGSDAWQRVNVAICAPSQIN-IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNH  308 (591)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~-i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  308 (591)
                      ........       ....+. ...+.++..|.+++.|.+..+.+............ ..+..++.+.      .     
T Consensus       634 ~~~~~~~~-------~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~-~~p~~p~~~~------~-----  694 (897)
T 2dtg_E          634 RQAEDSEL-------FELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECC-SCPKTDSQIL------K-----  694 (897)
T ss_dssp             EECCCCSC-------TTCSSSCSCCCCCC---------------------------------------------------
T ss_pred             ECCCCccc-------eecccccCCCcCCccccceeeecccccCcccccccccCCCcc-CCcCcccchh------h-----
Confidence            66543211       011222 23467889999999998876543321100000000 0000001000      0     


Q ss_pred             cEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcc
Q psy12425        309 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF  388 (591)
Q Consensus       309 ~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~  388 (591)
                             ........+.|.......                +....  + +...|....                     
T Consensus       695 -------~~~~~s~~~~W~~~~~n~----------------v~~~~--p-~~~r~~l~~---------------------  727 (897)
T 2dtg_E          695 -------ELEESSFRKTFEDYLHNV----------------VFVPR--P-SRKRRSLGD---------------------  727 (897)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------hhhhhheeeeEEEccCce----------------EEccC--C-Ccccccccc---------------------
Confidence                   000112234553211000                00000  0 000000000                     


Q ss_pred             cCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        389 NVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       389 ~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                                 + .+..                      ...  ..+.+........++|.+|.+...|.|++.|.|..|
T Consensus       728 -----------~-~n~t----------------------~~~--~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G  771 (897)
T 2dtg_E          728 -----------V-GNAG----------------------NNE--EHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDT  771 (897)
T ss_dssp             --------------------------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSS
T ss_pred             -----------c-cccc----------------------Ccc--ccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCC
Confidence                       0 0000                      000  000011122446889999999999999999999998


Q ss_pred             ccc---eEEEEEec-----CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe----ceeee
Q psy12425        469 MDS---AIVKIQIS-----DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV----GNTRF  536 (591)
Q Consensus       469 ~~~---~~~~~~v~-----~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~----~~~~~  536 (591)
                      ...   .+..+.+.     .+|.+|..+.+...+.+++.|+|++|...+| .+.+|.|+|+......+...    .....
T Consensus       772 ~g~~~s~s~~v~~~T~~~~~~p~~P~~l~~~~~~~~sv~LsW~~P~~~nG-~I~~Y~V~y~~~~~~~~~~~~~~~~~~~~  850 (897)
T 2dtg_E          772 PEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALE  850 (897)
T ss_dssp             SSCCBCCCCCEEEECCCCCCCCCCCCCCCCCSSSSSCCCCCCCCCCSCSS-CEEEECCCCBSSSBCCCCCCCCSSSCCCT
T ss_pred             CCCCCCCCceeEEeccCccCCCCCCcceEEEeCCCCEEEEEECCCCCCCC-CEEEEEEEEEECCCcceEEEEeeeeeccc
Confidence            643   12223332     2467888888888889999999999875555 69999999987654221111    13355


Q ss_pred             eEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEE
Q psy12425        537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT  573 (591)
Q Consensus       537 ~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~  573 (591)
                      +.++|.+|.|+ .|.|+|+|.|.+|.|++|....+.|
T Consensus       851 ~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~~v~~~T  886 (897)
T 2dtg_E          851 RGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYV  886 (897)
T ss_dssp             TCCCCCSCCSS-EECCCCCEEETTBCCCCCCCCEECC
T ss_pred             CcEEECCCCCC-cEEEEEEEEeCCcccCCCCCEEEEe
Confidence            68899999999 6999999999999999998865533

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.90  E-value=2.1e-22  Score=194.06  Aligned_cols=307  Identities=11%  Similarity=0.132  Sum_probs=179.5

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CCC-e
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PKP-T  323 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~  323 (591)
                      ...|.|.+++..|.|.|+|.+.|..+..........+.+.... ..+|.+........+.+|+.+.|.|.+.|. |.+ .
T Consensus        78 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~  156 (444)
T 1igt_B           78 TLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAK-TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVT  156 (444)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCC-CBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCE
T ss_pred             eEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCC-CCCCceeEecccccCCCCCcEEEEEEEcceeCCCcE
Confidence            3589999999999999999999875431011122345554321 234555433333445889999999999884 776 9


Q ss_pred             eEEecCCccCCCCCceEEEEeCC---eEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe-----------------
Q psy12425        324 ISWLKGSREITPSARHHIFAEGD---TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM-----------------  383 (591)
Q Consensus       324 v~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~-----------------  383 (591)
                      +.|++++..+...........+.   ...|.|.++..+| |.|+|.|.|..|.......+.+.                 
T Consensus       157 v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  235 (444)
T 1igt_B          157 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNL  235 (444)
T ss_dssp             EEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCC
T ss_pred             EEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCccc
Confidence            99999877532110000111111   1368899999889 99999999998876444433221                 


Q ss_pred             -cCCcc-cCCCCcccceeecCCCeEEEEEeeeccC----CCeEEEeeCCeEeeeccceE-EEe-c---CCeeEEEEeccC
Q psy12425        384 -TAPKF-NVPPRFRDTAYFDKGENVVVKIPFTGYP----KPKITWYRDNEVIESGGHFH-VET-S---ERHAILTIRDAS  452 (591)
Q Consensus       384 -~~p~~-~~~~~~~~~~~~~~g~~~~l~c~~~~~p----~~~v~W~~~~~~~~~~~~~~-~~~-~---~~~~~l~i~~~~  452 (591)
                       .+|.+ ..++..  ...+..|+.+.|.|.+.|.+    .+.+.|++++..+....... ... .   .....|.|.++.
T Consensus       236 ~~~p~v~~~~p~~--~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  313 (444)
T 1igt_B          236 LGGPSVFIFPPKI--KDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQD  313 (444)
T ss_dssp             CCCCEEEEECCCH--HHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHH
T ss_pred             CCCceEEecCCch--hheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHH
Confidence             12332 122211  11147899999999999884    36999999998775432111 111 1   124689999999


Q ss_pred             CCcceeEEEEEEcCCCccceEEEEEe-cCCCCCCCCCeee-----eecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-
Q psy12425        453 NVDTAPYRVVAENDLGMDSAIVKIQI-SDRPDPPQFPTVE-----DIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-  525 (591)
Q Consensus       453 ~~~~g~y~c~a~n~~g~~~~~~~~~v-~~~p~~p~~~~~~-----~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-  525 (591)
                      .+|.|.|+|.|.|..|.......+.. .....+|. +.+.     .+..+.+.|.|........ ++   .|.|...+. 
T Consensus       314 ~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~-v~~~~~~~~~~~~~~~~L~C~~~g~~P~-~~---~v~W~k~g~~  388 (444)
T 1igt_B          314 WMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQ-VYVLPPPEEEMTKKQVTLTCMVTDFMPE-DI---YVEWTNNGKT  388 (444)
T ss_dssp             HHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCE-EEEECCCGGGTTSSEEEEEEEEEEEBSS-CC---EEEEEETTEE
T ss_pred             hccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCE-EEEeCCChHHccCCeEEEEEEEEeeeCC-CC---EEEEEECCEE
Confidence            99999999999999987744444422 12222232 1111     1233458888875221111 11   222222211 


Q ss_pred             -CceEE-----eceee---eeEEEEcCcccCceEEEEEEEEcCCc
Q psy12425        526 -SSWIR-----VGNTR---FTTMAITGLSPGHQYEFRVYAENVYG  561 (591)
Q Consensus       526 -~~~~~-----~~~~~---~~~~~i~~l~~~~~Y~~~v~A~n~~G  561 (591)
                       .....     ..++.   ...+.+......+.+.|+|+|.|..-
T Consensus       389 l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          389 ELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             CSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             ccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence             00000     11111   12344444444457899999999864

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.90  E-value=4.4e-22  Score=184.48  Aligned_cols=162  Identities=12%  Similarity=0.163  Sum_probs=99.7

Q ss_pred             eeccccEEEEEEEcCC-CC-CeeEEecCCccCCCCCceEEEEeCC----eEEEEEcceecccceEEEEEEEeCCcceeee
Q psy12425        304 AIQNHNAQFQCTITGC-PK-PTISWLKGSREITPSARHHIFAEGD----TYTLIINSVYGVDADEYVCRAVNKGGVKSTK  377 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~  377 (591)
                      +.+|+.+.|.|.+.|. |. +.+.|++++..+...........++    ...|.|.++..+| |.|+|.|.|..+.....
T Consensus       132 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~  210 (344)
T 1za6_B          132 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  210 (344)
T ss_dssp             TTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEE
T ss_pred             ccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccce
Confidence            3567788999999886 54 6999999887642110000111111    1268899988888 99999999998864333


Q ss_pred             eEEE------------------------EecCCcccCCCCcccceeecCCCeEEEEEeeecc-C-CCeEEEeeCCeEeee
Q psy12425        378 AELI------------------------IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-P-KPKITWYRDNEVIES  431 (591)
Q Consensus       378 ~~l~------------------------v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p-~~~v~W~~~~~~~~~  431 (591)
                      ..+.                        +..+|.+...+..  .. ...|..+.|.|.+.|. | .+.+.|+++|..+..
T Consensus       211 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~--~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~  287 (344)
T 1za6_B          211 KKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPS--RD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN  287 (344)
T ss_dssp             EEECCCCC--------------------CCBCCEEEEECCC--GG-GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCS
T ss_pred             EeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCC--hH-hccCCcEEEEEEEeeEECCCeEEEEEECCeECCC
Confidence            2221                        1223433221110  11 1235669999999985 4 368999999988754


Q ss_pred             ccceEEEecCC-----eeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        432 GGHFHVETSER-----HAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       432 ~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      .....+....+     ...|.|.....+|.|.|+|.|.|....
T Consensus       288 ~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          288 YKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             EEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred             cEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence            32222211211     234556555556799999999998654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.89  E-value=3.8e-22  Score=183.76  Aligned_cols=250  Identities=13%  Similarity=0.110  Sum_probs=171.3

Q ss_pred             cccceeccccEEEEEEEcCC---------CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccce-EEEEEEEe
Q psy12425        300 RNANAIQNHNAQFQCTITGC---------PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRAVN  369 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~---------p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~a~n  369 (591)
                      ..+.+.+|+.+.|.|.+.+.         |.+.+.|++++..+....+.  ...+   +|.|.+++.+|+| .|+|.|.|
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~---~L~i~~v~~~D~Gs~Y~C~a~n  111 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNG---DLWIANYTSNDSHRRYLCTVTT  111 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EETT---EEEESSCCGGGGGCCEEEEEEC
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--eecc---eEEEcCCChHhCCCcEEEEEEe
Confidence            45668999999999999874         66899999998776543333  2233   7999999999999 99999999


Q ss_pred             CCcceeeeeEEEEec-CCcccCCCCcccceeecCCCeEEEEEeeeccC-CCeEEEeeCCeEeeec-cceEEEecCCeeEE
Q psy12425        370 KGGVKSTKAELIIMT-APKFNVPPRFRDTAYFDKGENVVVKIPFTGYP-KPKITWYRDNEVIESG-GHFHVETSERHAIL  446 (591)
Q Consensus       370 ~~g~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l  446 (591)
                      ..|.......+.+.. +|.+..++   ....+..|+.+.|.|.+.|.| .+.+.|++++..+... .++...    ...|
T Consensus       112 ~~g~~~~~~~~~v~~~~p~~~~~~---~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~----~~~L  184 (329)
T 3oq3_B          112 KNGDCVQGIVRSHIRKPPSCIPET---YELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS----GQNL  184 (329)
T ss_dssp             TTSCEEEEEEEEEECCCCSCEEEE---EETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE----TTEE
T ss_pred             CCCceeeEEEEEEEcCCCcEeccc---cceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC----CCEE
Confidence            988754444334443 33322111   122356799999999999999 9999999999988532 233322    4789


Q ss_pred             EEeccCCCcceeEEEEEEcC--CCccceE----EEEEecCCCCCC----CCCeeeeecCCeeEEEeeccccCCC-cceee
Q psy12425        447 TIRDASNVDTAPYRVVAEND--LGMDSAI----VKIQISDRPDPP----QFPTVEDIGHDSLALVWRAPIWDGG-SNITN  515 (591)
Q Consensus       447 ~i~~~~~~~~g~y~c~a~n~--~g~~~~~----~~~~v~~~p~~p----~~~~~~~~~~~~v~l~W~~p~~~~~-~~~~~  515 (591)
                      .|.++..+|+|.|+|.|.|.  .|.....    +.|.|..+|...    ....+....+..+.|.|........ .++  
T Consensus       185 ~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i--  262 (329)
T 3oq3_B          185 IIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDV--  262 (329)
T ss_dssp             EECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCC--
T ss_pred             EEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCc--
Confidence            99999999999999999997  7665444    667787666321    1112233456678888886432110 111  


Q ss_pred             EEEEeeeCCCC-----c-e-EE---eceeeeeEEEEcCcccCceE-EEEEEEEcCCcCCC
Q psy12425        516 YIVEKREHPMS-----S-W-IR---VGNTRFTTMAITGLSPGHQY-EFRVYAENVYGRSD  564 (591)
Q Consensus       516 y~v~~~~~~~~-----~-~-~~---~~~~~~~~~~i~~l~~~~~Y-~~~v~A~n~~G~~~  564 (591)
                       .+.|...+..     . . ..   ........+.|.++...+.+ .|+|.|.|..|...
T Consensus       263 -~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~  321 (329)
T 3oq3_B          263 -LIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT  321 (329)
T ss_dssp             -EEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEE
T ss_pred             -EEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceE
Confidence             2333222111     0 0 00   01124578999999999999 99999999999643

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.89  E-value=3.5e-22  Score=168.28  Aligned_cols=182  Identities=24%  Similarity=0.435  Sum_probs=142.8

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCC--CCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP--SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      +|.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ..++.+..++   +|.|.++..+|+|.|+|.+.|
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~   78 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRV   78 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTS---CEEETTCCGGGCEEEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCC---CEEEeeCCHhHCcEEEEEEEE
Confidence            56777777888899999999999999999999999999877653  3344443333   699999999999999999999


Q ss_pred             CCcce--eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEE
Q psy12425        370 KGGVK--STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILT  447 (591)
Q Consensus       370 ~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~  447 (591)
                      ..+..  .....+.+..+|.+...+. .....+..|+.+.|.|.+.|.|.+.+.|+++|..+.....+.+.  .....|.
T Consensus        79 ~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~  155 (189)
T 2v5t_A           79 EARGEIDFRDIIVIVNVPPAISMPQK-SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELT  155 (189)
T ss_dssp             TTTTEEEEEEEEEEEEEEEEEECSCC-EEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEE--TTTTEEE
T ss_pred             cCCCceEEEEEEEEecCCCCcccccc-cccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEe--cCCCEEE
Confidence            87544  3456677777776654332 12345678999999999999999999999999988776666544  3457899


Q ss_pred             EeccCCCcceeEEEEEEcCCCccceEEEEEec
Q psy12425        448 IRDASNVDTAPYRVVAENDLGMDSAIVKIQIS  479 (591)
Q Consensus       448 i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~  479 (591)
                      |.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus       156 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          156 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            99999999999999999999998888877764

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.89  E-value=8.6e-20  Score=183.82  Aligned_cols=220  Identities=15%  Similarity=0.139  Sum_probs=151.9

Q ss_pred             eEEEEEcccCCCCceEEEEEEEcCCee-e--EEEEEEEEec---CCCCCCCCcceEEe--cCc---eEEEEecCCCCCCC
Q psy12425         50 YIIIFIKEIRKEDAGDYTVNLSNSSGS-V--SGTFTINITG---LPGPPIGPLDVSEI--TKH---TCTLHWNPPKYDGG  118 (591)
Q Consensus        50 ~~~l~i~~~~~~d~g~Y~c~~~n~~g~-~--~~~~~l~v~~---~p~~p~~~~~~~~~--~~~---~~~l~w~~p~~~~~  118 (591)
                      ...+.|.+|.+...|.|++.|.|..|. .  +.+..+....   +|.+|.. +.+...  ...   ++.|+|.+|... +
T Consensus       222 ~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~-l~~~~~~~~~~g~~sv~l~W~pP~~~-~  299 (680)
T 1zlg_A          222 DERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPAN-LRLANSTVNSDGSVTVTIVWDLPEEP-D  299 (680)
T ss_pred             CCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCc-eEeeeeeecCCCceEEEEEecCCCCC-C
Confidence            357889999999999999999999883 2  2223333322   3444444 455555  566   999999988744 4


Q ss_pred             cceeeEEEEEEec-------CCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCC
Q psy12425        119 LKVTHYVVERRDI-------SMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS  191 (591)
Q Consensus       119 ~~~~~y~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~  191 (591)
                      .++.+|.|.+...       ....|...........+.+.+|.+++.|.|+|.|.|..|.+..+.....+...+...+|.
T Consensus       300 g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~~~P~  379 (680)
T 1zlg_A          300 IPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN  379 (680)
T ss_pred             CceeEEEEEEEecccccccCCccceEEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEEEECCCCCCC
Confidence            5889999999822       123566655555668899999999999999999999999987765533344444444555


Q ss_pred             CCCCCeEEeecCCeEEE-----------EEecCCCCCCcceEEEEEEeeecCCCc-------------------cEEEEe
Q psy12425        192 PPGIPVVTQVGGDFVNL-----------SWDKPLDDGGSRIQGYWIDKHEVGSDA-------------------WQRVNV  241 (591)
Q Consensus       192 ~~~~~~~~~~~~~~v~l-----------~w~~~~~~~~~~~~~y~~~~~~~~~~~-------------------~~~~~~  241 (591)
                       |..+........++.|           +|..|...+  .+..|.+.+...+...                   |.....
T Consensus       380 -p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~~~--~~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~  456 (680)
T 1zlg_A          380 -KEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQD--GQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASS  456 (680)
T ss_pred             -ccccccccccCccccccccccCCCccccccCCcccC--CcceEEEEEeCCCCCccceEEEEEeeeecccCCCCcceeee
Confidence             5556666666666765           998875322  3556777776554321                   111112


Q ss_pred             eecCCceeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425        242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSL  274 (591)
Q Consensus       242 ~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~  274 (591)
                      .......+.|.+|.+++.|.|++.|.|..|.+.
T Consensus       457 ~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~  489 (680)
T 1zlg_A          457 GMTHENYIILQDLSFSCKYKVTVQPIRPKSHSK  489 (680)
T ss_pred             eeccCceEEecCCCCCCeEEEEEEEecCCCCCC
Confidence            233457899999999999999999999988653

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.89  E-value=1.7e-22  Score=177.47  Aligned_cols=197  Identities=21%  Similarity=0.323  Sum_probs=143.4

Q ss_pred             CCCeEEeec----cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCce-EEEEeCCeEEEEEcceecccceEEEE
Q psy12425        291 KAPEIIVPL----RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARH-HIFAEGDTYTLIINSVYGVDADEYVC  365 (591)
Q Consensus       291 ~~p~~~~~~----~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~c  365 (591)
                      .+|.+..+.    ....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... .........+|.|.++...|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            456665443    3567889999999999999999999999999887654332 11222334489999999999999999


Q ss_pred             EEEeCCcceeeeeEEEEecCCcccC--CCCcccceeecCCCeEEEEEeeeccCCCeEEEee----CCeEeeeccceEEE-
Q psy12425        366 RAVNKGGVKSTKAELIIMTAPKFNV--PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR----DNEVIESGGHFHVE-  438 (591)
Q Consensus       366 ~a~n~~g~~~~~~~l~v~~~p~~~~--~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~----~~~~~~~~~~~~~~-  438 (591)
                      .+.|..|.......+.|...+....  .........+..|+.+.|.|.+.+.|.+.+.|++    ++..+......... 
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~  169 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV  169 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEE
T ss_pred             EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeee
Confidence            9999999888888888876322110  0011234557889999999999999999999999    77766544332211 


Q ss_pred             -------ecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCC
Q psy12425        439 -------TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF  487 (591)
Q Consensus       439 -------~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~  487 (591)
                             .......|.|.++...|.|.|+|.|.|..|..+..+.|.|..+|.+|..
T Consensus       170 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~  225 (241)
T 3grw_A          170 LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE  225 (241)
T ss_dssp             EEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---------
T ss_pred             eeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCcc
Confidence                   1124678999999999999999999999999999999999998877654

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.89  E-value=1.1e-20  Score=170.10  Aligned_cols=171  Identities=16%  Similarity=0.240  Sum_probs=117.2

Q ss_pred             EEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecC-CCceEEEEeecCcceEEEcCCcCCcEEEE
Q psy12425         83 INITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS-MPHWICISTTCHDTTFIVQGLTEGQEYLF  161 (591)
Q Consensus        83 l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~y~~  161 (591)
                      +.....|.+|.. +.+......++.|+|.++.    ..+..|.+.++... ...|...........+.+.+|.+++.|.|
T Consensus         9 ~~~~~~p~~P~~-l~~~~~~~~sv~l~W~~~~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   83 (283)
T 1tdq_A            9 GGGIPVIDGPTQ-ILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEV   83 (283)
T ss_dssp             ---CCSSCCCEE-EEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEE
T ss_pred             cccccCCCCCcE-EEEEecCCCeEEEEEECCC----CceeEEEEEEEEecCCCCcEEEEeCCCCCEEEecCCCCCCEEEE
Confidence            344456667766 6777788899999999876    36778999987543 34455555556788999999999999999


Q ss_pred             EEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEe
Q psy12425        162 HVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV  241 (591)
Q Consensus       162 ~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~  241 (591)
                      +|.|.|..|.+....    ....   .+|.+|..+.+.....+++.|+|.++.    ..+.+|.+.+...+...+.....
T Consensus        84 ~V~a~~~~g~s~~~~----~~~~---t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~  152 (283)
T 1tdq_A           84 SISAVRGTNESDASS----TQFT---TEIDAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLV  152 (283)
T ss_dssp             EEEEEETTEECCCEE----EEEE---CCCCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTCCCCEEEEE
T ss_pred             EEEEECCCCCCCCee----EEEE---CCCCCCCceEEEecCCCeEEEEecCCC----CCccEEEEEEEeCCCCcceEEEC
Confidence            999999887764321    1111   256677778888888999999999863    36788999887765544433222


Q ss_pred             eecC---CceeeecCcccCCcEEEEEEEEcCC
Q psy12425        242 AICA---PSQINIPNLIEGRQYEFRVYAQNEA  270 (591)
Q Consensus       242 ~~~~---~~~~~i~~l~~~~~~~y~c~a~n~~  270 (591)
                      . ..   ...+.+.+|.++..|.|++.|.|..
T Consensus       153 ~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~  183 (283)
T 1tdq_A          153 P-KGIGPTTKTTLTDLVPGTEYGVGISAVMNS  183 (283)
T ss_dssp             E-CCSSSEEEEEECSCCTTCEEEEEEEEEETT
T ss_pred             C-CCCcccceEEEecCCCCCEEEEEEEEEeCC
Confidence            1 11   3455566666666666666665543

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.89  E-value=1.7e-21  Score=195.16  Aligned_cols=446  Identities=15%  Similarity=0.121  Sum_probs=265.4

Q ss_pred             ecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEE-------------EeCCeEEEEEc-ccCCCCceEEEEEEEcC
Q psy12425          8 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFT-------------VLDDYIIIFIK-EIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         8 ~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-------------~~~~~~~l~i~-~~~~~d~g~Y~c~~~n~   73 (591)
                      .++....|.|...+.....++|..+...- ....+.+.             ..+......|. ++.+...+.|+|.|.|.
T Consensus       102 pP~~P~nl~c~~~~~~~~~~~W~~~~~~~-~~~~y~l~~~~~~~~~~~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~  180 (589)
T 3l5h_A          102 PPEKPKNLSCIVNEGKKMRCEWDGGRETH-LETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENA  180 (589)
T ss_dssp             CCCCCEEEEEEEETTSCEEEEEECCSCCS-SCEEEEECCBCSSSBCCCEECBTTBSSCCBCCSCCCSSSCEEECEEEEES
T ss_pred             CCCCCEeeEEEECCCceEEEEECCCCcCC-cCceEEEEEEEcCCCcccCCCCCCCcEEEEECCCCchheeEEEEEEEEeC
Confidence            45677889999988778899998753210 00111111             01111234455 67788899999999999


Q ss_pred             CeeeEE-EEEEEEe--cCCCCCCCCcce--EEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe---ecCc
Q psy12425         74 SGSVSG-TFTINIT--GLPGPPIGPLDV--SEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST---TCHD  145 (591)
Q Consensus        74 ~g~~~~-~~~l~v~--~~p~~p~~~~~~--~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~---~~~~  145 (591)
                      .|.... ...+...  ..|.+|.. +.+  ......++.|+|.+|...++ .+..|.++++..+...|..+..   ....
T Consensus       181 ~G~~~s~~~~~~~~~~~~p~pP~~-~~~~~~~~~~~~v~l~W~~p~~~~~-~~~~Y~v~~~~~~~~~w~~~~~~~~~~~~  258 (589)
T 3l5h_A          181 LGKVTSDHINFDPVYKVKPNPPHN-LSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTR  258 (589)
T ss_dssp             SCCBCCCCEEECGGGSEECCCCCS-CEEECTTTCTTCEEEECCCCGGGGT-SCEEEEEEEEETTCSCCBCCCTTSSCSCC
T ss_pred             CCCcccccEEEccccEEEcCCCce-EEEEecCCCCCeEEEEeCCCCCCCe-eeEEEEEEECCCCCCCcEEEccccCcCce
Confidence            998632 2333332  25677765 344  33567899999998875443 6788999999988777876532   2345


Q ss_pred             ceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCC-CCCCCeEE----eecCCeEEEEEecCC-CCCCc
Q psy12425        146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS-PPGIPVVT----QVGGDFVNLSWDKPL-DDGGS  219 (591)
Q Consensus       146 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~----~~~~~~v~l~w~~~~-~~~~~  219 (591)
                      ..+.+.+|.+++.|.|+|+|.|..|.+..+..+..+...+....|. +|......    .....++.|.|.++. ...+.
T Consensus       259 ~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g  338 (589)
T 3l5h_A          259 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANG  338 (589)
T ss_dssp             SEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEEECCSCSSTTSCCEEEEECCCCTTTSSS
T ss_pred             eEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcEEEEeecCcCCCcceEEEEEeeCCchhccC
Confidence            7899999999999999999999999888776666665555555553 34322222    345688999999742 33445


Q ss_pred             ceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeec
Q psy12425        220 RIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPL  299 (591)
Q Consensus       220 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~  299 (591)
                      .+.+|.+.+...+. .|...   ......+++  +.++..|.|++.|.|..|.+..+.....  ..+...+.++....  
T Consensus       339 ~i~~Y~v~~~~~~~-~~~~~---~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~~~~--~~~~~~~~p~~~l~--  408 (589)
T 3l5h_A          339 KILDYEVTLTRWKS-HLQNY---TVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIP--ACDFQATHPVMDLK--  408 (589)
T ss_dssp             CCCEEEEEECCTTS-CCCBC---CCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCCCCC--CTTCCCCSCCCSCE--
T ss_pred             ceeeEEEEEecCCC-Cceee---ccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEEEee--cccccCCCCcceEE--
Confidence            78999999876544 23221   122334444  7799999999999999998876533211  11001111221110  


Q ss_pred             cccceeccccEEEEEEEcCC--CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeee
Q psy12425        300 RNANAIQNHNAQFQCTITGC--PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK  377 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~  377 (591)
                         ....+..+.|.|.....  ..-.|.|...+...................+.+.+|.+...|.|++.|.|..|.....
T Consensus       409 ---~~~~~~si~l~W~~p~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~g~g~~~  485 (589)
T 3l5h_A          409 ---AFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE  485 (589)
T ss_dssp             ---EEECSSSEEEECCCCSSCCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSCCCSSSEEEEEECBEETTEECCCE
T ss_pred             ---EEECCCeEEEEEECCCCCccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhccccCcEEEEEEEEEeCCcccCCE
Confidence               11225678888775432  1235667654332111111111122234456678999999999999999998877553


Q ss_pred             eEEEEecCCcccCCCCcccceeecCCCeEEEEEee--eccCCCe-----EEEeeCCeEeeeccceEEEecCCeeEEEEec
Q psy12425        378 AELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF--TGYPKPK-----ITWYRDNEVIESGGHFHVETSERHAILTIRD  450 (591)
Q Consensus       378 ~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~--~~~p~~~-----v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~  450 (591)
                       .+.+......+..+... .........+.|.+..  ...+...     |.|...+     +.............++|.+
T Consensus       486 -~~~~~t~~~~P~~pp~l-~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~-----~~~~~~~~~~~~~~~~~~~  558 (589)
T 3l5h_A          486 -SIKAYLKQAPPSKGPTV-RTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII-----GNETAVNVDSSHTEYTLSS  558 (589)
T ss_dssp             -EEEEESSCCCCSSCCCC-CEECCCSSCBEEBCCCCCHHHHCSCEEEEEECCBCSS-----CCCCCEEECTTCCBCCBCS
T ss_pred             -EEEEEeccCCCCCCCeE-EEeecccceEEEEecCCCHHHcCccceeEEEEEEeCC-----CCeEEEEeCCcccEEEecC
Confidence             23333332222211111 1111223444444432  1111111     1111111     1111233445677889999


Q ss_pred             cCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        451 ASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       451 ~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      |.+...|.|++.|.|..| +..+..+.
T Consensus       559 L~p~t~Y~~~V~A~n~~G-~~~S~~~~  584 (589)
T 3l5h_A          559 LTSDTLYMVRMAAYTDEG-GKDGPEFT  584 (589)
T ss_dssp             CCSSCCEECCEEEEETTE-EEECCCCE
T ss_pred             CCCCCEEEEEEEEEeCCC-CCCCCCeE
Confidence            999999999999999999 54333333

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.89  E-value=1.5e-20  Score=169.83  Aligned_cols=262  Identities=24%  Similarity=0.366  Sum_probs=184.1

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecC-CCceEEEEeecCcceEEEcCCcCCcEEEEEEEEE
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS-MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAV  166 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~  166 (591)
                      .|.+|.. +.+......++.|+|.+|.    ..+.+|.|.+.... ...|...........+.+.+|.+++.|.|+|.|.
T Consensus        20 ~p~~P~~-l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   94 (290)
T 3r8q_A           20 AIPAPTD-LKFTQVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYAL   94 (290)
T ss_dssp             CCCCCEE-EEEEEECSSCEEEEEECCS----SCCCEEEEEEEESSSSSCCEEEEECTTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             CCCCCCc-eEEEECCCCEEEEEEeCCC----CCeeEEEEEEEeCCCCCceEEEEcCCCccEEEeCCCCCCCEEEEEEEEE
Confidence            3444444 5667788999999999874    36888999998765 4566666666678899999999999999999999


Q ss_pred             ccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCC
Q psy12425        167 NENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP  246 (591)
Q Consensus       167 n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~  246 (591)
                      |..|.+..+..  .+.  .. ..+.+|..+.+......++.|+|.++    ...+.+|.+.+...+...+..... ....
T Consensus        95 ~~~g~s~~s~~--~~~--t~-~~~~~P~~l~~~~~~~~sv~l~W~~p----~~~~~~Y~v~~~~~~~~~~~~~~~-~~~~  164 (290)
T 3r8q_A           95 KDTLTSRPAQG--VVT--TL-ENVSPPRRARVTDATETTITISWRTK----TETITGFQVDAVPANGQTPIQRTI-KPDV  164 (290)
T ss_dssp             ETTEECCCEEE--EEE--CC-CCCCCCEEEEEEEECSSCEEEEEECC----SCCCCEEEEEEEESSSCCCEEEEE-CTTC
T ss_pred             eCCCCCCCcce--eEe--cC-CCCCCCceeEEEEcCCCeEEEEEeCC----CCcccEEEEEEEECCCCcceEEec-CCCc
Confidence            99988776532  111  11 12356667778888899999999986    235778888877654333222211 1233


Q ss_pred             ceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEE
Q psy12425        247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW  326 (591)
Q Consensus       247 ~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W  326 (591)
                      ..+.+.+|.++..|.|++.|.|..|.+                                                     
T Consensus       165 ~~~~i~~L~p~t~Y~~~V~A~n~~g~s-----------------------------------------------------  191 (290)
T 3r8q_A          165 RSYTITGLQPGTDYKIYLYTLNDNARS-----------------------------------------------------  191 (290)
T ss_dssp             SEEEECSCCTTCEEEEEEEEEETTEEC-----------------------------------------------------
T ss_pred             cEEEECCCCCCCEEEEEEEEEeCCccc-----------------------------------------------------
Confidence            455555555555555555555543321                                                     


Q ss_pred             ecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeE
Q psy12425        327 LKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV  406 (591)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~  406 (591)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (290)
T 3r8q_A          192 --------------------------------------------------------------------------------  191 (290)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCC
Q psy12425        407 VVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ  486 (591)
Q Consensus       407 ~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~  486 (591)
                                                                                      .. ..+.....|.+|.
T Consensus       192 ----------------------------------------------------------------~~-~~~~~~t~p~~P~  206 (290)
T 3r8q_A          192 ----------------------------------------------------------------SP-VVIDASTAIDAPS  206 (290)
T ss_dssp             ----------------------------------------------------------------CC-EEEEEECCCCCCE
T ss_pred             ----------------------------------------------------------------CC-EEEEecCCCCCCC
Confidence                                                                            10 1111123456666


Q ss_pred             CCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCC
Q psy12425        487 FPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSD  564 (591)
Q Consensus       487 ~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~  564 (591)
                      ++.+...+.+++.|+|.+|.    +.+.+|.|+++..+...|...  .......+.|.+|.|++.|.|+|+|.|..|.|+
T Consensus       207 ~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~  282 (290)
T 3r8q_A          207 NLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSE  282 (290)
T ss_dssp             EEEEEEEETTEEEEEEECCS----SCCCEEEEEEECTTSCCEECSSCCCTTCCEEEECSCCTTCEEEEEEEEEETTEECC
T ss_pred             ccEEEeeCCCEEEEEEeCCC----CcccEEEEEEEeCCCCcceeEeccCCCccEEEECCCCCCCEEEEEEEEEeCCCcCC
Confidence            77777778899999999864    278999999998877666543  234667999999999999999999999999987


Q ss_pred             CC
Q psy12425        565 PS  566 (591)
Q Consensus       565 ~s  566 (591)
                      +.
T Consensus       283 p~  284 (290)
T 3r8q_A          283 PL  284 (290)
T ss_dssp             CE
T ss_pred             cc
Confidence            64

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.89  E-value=1.7e-22  Score=176.39  Aligned_cols=197  Identities=19%  Similarity=0.307  Sum_probs=148.2

Q ss_pred             CCCeEEeec----cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEE-EEeCCeEEEEEcceecccceEEEE
Q psy12425        291 KAPEIIVPL----RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYGVDADEYVC  365 (591)
Q Consensus       291 ~~p~~~~~~----~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~c  365 (591)
                      .+|.+...+    ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.. .......+|.|.++..+|+|.|+|
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   93 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC   93 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEE
Confidence            356665554    566788999999999999999999999999988765443311 122233479999999999999999


Q ss_pred             EEEeCCcceeeeeEEEEecCCcccC--CCCcccceeecCCCeEEEEEeeeccCCCeEEEee----CCeEeeeccceEE--
Q psy12425        366 RAVNKGGVKSTKAELIIMTAPKFNV--PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR----DNEVIESGGHFHV--  437 (591)
Q Consensus       366 ~a~n~~g~~~~~~~l~v~~~p~~~~--~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~----~~~~~~~~~~~~~--  437 (591)
                      .+.|..|.......+.|...+....  .........+..|+.+.|.|.+.+.|.+.+.|++    +|..+........  
T Consensus        94 ~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~  173 (231)
T 3ojm_B           94 VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV  173 (231)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEE
T ss_pred             EEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeE
Confidence            9999999888888888876443211  1111234567889999999999999999999999    7776643332111  


Q ss_pred             E-----ecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCC
Q psy12425        438 E-----TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF  487 (591)
Q Consensus       438 ~-----~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~  487 (591)
                      .     .......|.|.++...|.|.|+|.|.|..|..+..+.|.|..+|.+|..
T Consensus       174 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~~  228 (231)
T 3ojm_B          174 LKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR  228 (231)
T ss_dssp             EEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-----
T ss_pred             ecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCcc
Confidence            1     1123467999999999999999999999999999999999999988764

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.89  E-value=3e-22  Score=169.46  Aligned_cols=173  Identities=14%  Similarity=0.195  Sum_probs=135.4

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCe-eEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ..|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+....          ..|.|.+++.+|+|.|+|.|.|
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n   75 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQL   75 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETT
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCC
Confidence            457777777777899999999999999988776 99999988775432          3799999999999999999987


Q ss_pred             CCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CCCeEEEeeCCeEeeeccceEEEecCCeeEEEE
Q psy12425        370 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKPKITWYRDNEVIESGGHFHVETSERHAILTI  448 (591)
Q Consensus       370 ~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i  448 (591)
                        +..+....|.|..+|.+...+.    ..+.+|+.+.|.|.+.+. |.+.+.|+++|..+..        ......|.|
T Consensus        76 --~~~s~~~~l~V~~~p~~~~~~~----~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~--------~~~~~~L~i  141 (204)
T 3sgj_C           76 --STLSDPVQLEVHIGWLLLQAPR----WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY--------FHHNSDFYI  141 (204)
T ss_dssp             --SBCCCCEEEEEECSSEEEECSC----SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE--------EEECCCEEE
T ss_pred             --CcccccEEEEEecCceEecCCc----eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec--------ccCCceEEE
Confidence              3455677888888776654443    456789999999999765 6689999999987632        123568999


Q ss_pred             eccCCCcceeEEEEEEc-CCCccceEEEEEecCCCCCCCC
Q psy12425        449 RDASNVDTAPYRVVAEN-DLGMDSAIVKIQISDRPDPPQF  487 (591)
Q Consensus       449 ~~~~~~~~g~y~c~a~n-~~g~~~~~~~~~v~~~p~~p~~  487 (591)
                      .++..+|+|.|+|.|.| ..+..+..+.|.|..+|..|..
T Consensus       142 ~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P~i  181 (204)
T 3sgj_C          142 PKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTI  181 (204)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-------
T ss_pred             CcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCCcc
Confidence            99999999999999999 5556688889999888766653

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.89  E-value=2.3e-21  Score=177.60  Aligned_cols=261  Identities=13%  Similarity=0.135  Sum_probs=168.5

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+. ..+.+|+.+.|.|.+.+. .+.+.|++++..+......    ......|.|.+++.+|+|.|+|.|.|.
T Consensus        23 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~~~   96 (316)
T 3vh8_G           23 DKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHG----RIFQESFNMSPVTTAHAGNYTCRGSHP   96 (316)
T ss_dssp             -CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHH----CCBSSCEEECSCCGGGCEEEEEEEBCS
T ss_pred             CCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecC----CcceEEEEECCCCcccCeEEEEEEEcC
Confidence            5788877766 568899999999999888 6789999998775431110    111236999999999999999999874


Q ss_pred             Cc-----ceeeeeEEEEecC---CcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccce-EEEecC
Q psy12425        371 GG-----VKSTKAELIIMTA---PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF-HVETSE  441 (591)
Q Consensus       371 ~g-----~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~  441 (591)
                      .+     ..+....|.|...   |.+...+    ...+..|+.+.|.|.+. .+.+.+.|++++..+...... ......
T Consensus        97 ~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~----~~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~  171 (316)
T 3vh8_G           97 HSPTGWSAPSNPVVIMVTGNHRKPSLLAHP----GPLVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGV  171 (316)
T ss_dssp             SSSSSBCCCCCCEEEEEECSSCCCEEEEES----CSEEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTE
T ss_pred             CCCcceecCCCcEEEEEecCCCCCeEEecC----CCccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCC
Confidence            32     2344566777553   2232222    12367899999999994 567799999998876432211 122223


Q ss_pred             CeeEEEEeccCCCcceeEEEEEEcCCCcc-----ceEEEEEecCCCCCCCCCee----eeecCCeeEEEeeccccCCCcc
Q psy12425        442 RHAILTIRDASNVDTAPYRVVAENDLGMD-----SAIVKIQISDRPDPPQFPTV----EDIGHDSLALVWRAPIWDGGSN  512 (591)
Q Consensus       442 ~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-----~~~~~~~v~~~p~~p~~~~~----~~~~~~~v~l~W~~p~~~~~~~  512 (591)
                      ....|.|.++..+|+|.|+|.|.|..|..     +..+.+.|...+.+|.. .+    ....+..++|.|...   .  +
T Consensus       172 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i-~~~~~~~v~~G~~v~L~C~~~---~--~  245 (316)
T 3vh8_G          172 SKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSL-SAQPGPKVQAGESVTLSCSSR---S--S  245 (316)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEE-EEESCSCCCTTSCCEEEEEES---S--C
T ss_pred             ceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeE-EeCCCCeecCCCcEEEEEECC---C--C
Confidence            56789999999999999999999998852     56667777765444421 11    113467899999863   1  2


Q ss_pred             eeeEEEEeeeCCCCceEE----eceeeeeEEEEcCcccCceEEEEEEEEcCCcC---CCCCCCcc
Q psy12425        513 ITNYIVEKREHPMSSWIR----VGNTRFTTMAITGLSPGHQYEFRVYAENVYGR---SDPSTTSD  570 (591)
Q Consensus       513 ~~~y~v~~~~~~~~~~~~----~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~---~~~s~~~~  570 (591)
                      ...|.+............    ........|.|.++.  +.+.|+|.|.|..|.   +..|....
T Consensus       246 ~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~  308 (316)
T 3vh8_G          246 YDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLL  308 (316)
T ss_dssp             CSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEE
T ss_pred             CcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEE
Confidence            233443332211111111    122334689999998  899999999998875   34555443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.88  E-value=1.2e-20  Score=161.79  Aligned_cols=85  Identities=25%  Similarity=0.347  Sum_probs=70.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEee-cCCceeEEEe-CCeEEEEEcccCC-CCceEEEEEEEcCCee-e
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQ-SDDRFKFTVL-DDYIIIFIKEIRK-EDAGDYTVNLSNSSGS-V   77 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~~-~~~~~l~i~~~~~-~d~g~Y~c~~~n~~g~-~   77 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.+.|+|+|..+. ...++.+... ++..+|.|.+++. +|+|.|+|.+.|..|. .
T Consensus        13 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~   92 (212)
T 2yd1_A           13 PQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV   92 (212)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEE
T ss_pred             CCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeE
Confidence            677899999999999999999999999999999987 4466666544 4447999999999 9999999999998776 4


Q ss_pred             EEEEEEEEe
Q psy12425         78 SGTFTINIT   86 (591)
Q Consensus        78 ~~~~~l~v~   86 (591)
                      +..+.|.|.
T Consensus        93 ~~~~~l~V~  101 (212)
T 2yd1_A           93 SADATLTIY  101 (212)
T ss_dssp             EEEEEEEEE
T ss_pred             EeeEEEEEe
Confidence            455555554

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.88  E-value=1.4e-20  Score=181.93  Aligned_cols=227  Identities=12%  Similarity=0.166  Sum_probs=141.6

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCC--------C-CCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEE
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGL--------S-LPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI  316 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~--------~-~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~  316 (591)
                      ...|.|.+++..|.|.|+|.|.|..|.        . ........+.+... ...+|.+........+.+|+.+.|.|.+
T Consensus        78 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~-~~~~P~i~~~~~~~~~~~g~~v~L~C~~  156 (457)
T 1hzh_H           78 TAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSA-STKGPSVFPLAPSSKSTSGGTAALGCLV  156 (457)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSC-CCBCCEEEEECCCSCCCTTCCEEEEEEE
T ss_pred             EEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCC-CCCCCeEEecCccccccCCCcEEEEEEE
Confidence            357999999999999999999987651        0 01112334555431 1235665554444557899999999999


Q ss_pred             cCC-CC-CeeEEecCCccCCCCCceEEEEeCC----eEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEec------
Q psy12425        317 TGC-PK-PTISWLKGSREITPSARHHIFAEGD----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT------  384 (591)
Q Consensus       317 ~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~------  384 (591)
                      .+. |. +.+.|++++..+...........++    ...|.|.++..+| |.|+|.|.|..+.......+.+..      
T Consensus       157 ~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~  235 (457)
T 1hzh_H          157 KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHT  235 (457)
T ss_dssp             ESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCS
T ss_pred             eEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccc
Confidence            986 64 7999999886543111111111222    1368999999999 999999999877654443333221      


Q ss_pred             -----------CCcc-cCCCCcccceeecCCCeEEEEEeeeccCCC----eEEEeeCCeEeeeccceEEEecCCeeEEEE
Q psy12425        385 -----------APKF-NVPPRFRDTAYFDKGENVVVKIPFTGYPKP----KITWYRDNEVIESGGHFHVETSERHAILTI  448 (591)
Q Consensus       385 -----------~p~~-~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i  448 (591)
                                 +|.+ ..++..  ...+..|+.+.|.|.+.|.|++    .+.|++++..+........... ....|.+
T Consensus       236 ~~~~~~~~~~~~p~v~~~~p~~--~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~-~~g~~~~  312 (457)
T 1hzh_H          236 CPPCPAPELLGGPSVFLFPPKP--KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ-YNSTYRV  312 (457)
T ss_dssp             CCSCCCCCCSSSCEEEEECCCH--HHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEEC-TTSCEEE
T ss_pred             cCCCCCccccCCceEEeECcCc--hhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceec-CCCcEEE
Confidence                       2222 111111  1114679999999999998653    9999999988753322111111 1122322


Q ss_pred             e---ccCCCc---ceeEEEEEEcCCCccceEEEEE
Q psy12425        449 R---DASNVD---TAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       449 ~---~~~~~~---~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      .   .+...|   .|.|+|.|.|..+.......+.
T Consensus       313 ~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~  347 (457)
T 1hzh_H          313 VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTIS  347 (457)
T ss_dssp             EEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEEC
T ss_pred             EEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEE
Confidence            2   233445   9999999998866654444443

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.88  E-value=7.7e-23  Score=187.72  Aligned_cols=255  Identities=16%  Similarity=0.193  Sum_probs=171.8

Q ss_pred             ccceeccccEEEEEEEcCCC-CCeeEEecCCccCC----CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425        301 NANAIQNHNAQFQCTITGCP-KPTISWLKGSREIT----PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS  375 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~  375 (591)
                      .+.+.+|+.+.|.|.+.+.| .+.+.|++++..+.    ...++..  .+.  +|.|.++..+|+|.|+|.|.|..|...
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~--~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~   89 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ--HKE--KLWFVPAKVEDSGHYYCVVRNSSYCLR   89 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEE--CSS--BEECTTCCGGGCSCCEECCCSSSCCCC
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEec--cCC--eEEECCCChhhCEEEEEEEeCCceEEE
Confidence            45678999999999999987 78999999886432    1223332  222  799999999999999999999988777


Q ss_pred             eeeEEEEec-CCcccCCCCcccceeecCCCeEEEEEee------eccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEE
Q psy12425        376 TKAELIIMT-APKFNVPPRFRDTAYFDKGENVVVKIPF------TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTI  448 (591)
Q Consensus       376 ~~~~l~v~~-~p~~~~~~~~~~~~~~~~g~~~~l~c~~------~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i  448 (591)
                      ....+.+.. +|.+...+.......+..|+.+.|.|.+      .|.|.+.+.|++++..+....... ..  ....|.|
T Consensus        90 ~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~-~~--~~~~L~i  166 (315)
T 1itb_B           90 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF-SG--VKDRLIV  166 (315)
T ss_dssp             EECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSE-EE--ETTEEEE
T ss_pred             EEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceE-ee--cCceEEE
Confidence            666666543 4444333332233567889999999998      899999999999999886533222 21  2458999


Q ss_pred             eccCCCcceeEEEEEE-cCCCcc---ceEEEEEecCC--CCCCCCC-----eeeeecCCeeEEEeeccccCCCcceeeEE
Q psy12425        449 RDASNVDTAPYRVVAE-NDLGMD---SAIVKIQISDR--PDPPQFP-----TVEDIGHDSLALVWRAPIWDGGSNITNYI  517 (591)
Q Consensus       449 ~~~~~~~~g~y~c~a~-n~~g~~---~~~~~~~v~~~--p~~p~~~-----~~~~~~~~~v~l~W~~p~~~~~~~~~~y~  517 (591)
                      .++...|+|.|+|.|. |..|..   +..+.+.+..+  +.+|...     .+....+..+.|.|....... ..+.+|.
T Consensus       167 ~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~-p~i~W~~  245 (315)
T 1itb_B          167 MNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLS-DIAYWKW  245 (315)
T ss_dssp             SSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTT-SEEEEEE
T ss_pred             EeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCC-CeeEEEE
Confidence            9999999999999999 788876   33444434321  2333221     123345677889888632111 1122221


Q ss_pred             EEeeeCCC-C-----ceEEece-------eeeeEEEEcCcccCc-eEEEEEEEEcCCcCCC
Q psy12425        518 VEKREHPM-S-----SWIRVGN-------TRFTTMAITGLSPGH-QYEFRVYAENVYGRSD  564 (591)
Q Consensus       518 v~~~~~~~-~-----~~~~~~~-------~~~~~~~i~~l~~~~-~Y~~~v~A~n~~G~~~  564 (591)
                       ....... .     .+.....       .....|.|.++...+ .+.|+|.|.|.+|...
T Consensus       246 -~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~  305 (315)
T 1itb_B          246 -NGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDA  305 (315)
T ss_dssp             -TTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEE
T ss_pred             -CCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCcee
Confidence             1111111 1     1111111       234589999999999 9999999999999654

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.88  E-value=8.5e-22  Score=169.41  Aligned_cols=180  Identities=17%  Similarity=0.336  Sum_probs=139.3

Q ss_pred             eEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccC------------CCCCceEEEEeCCeEEEEEcceecccce
Q psy12425        294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI------------TPSARHHIFAEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       294 ~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  361 (591)
                      .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....++.+..    .+|.|.++..+|+|
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~G   78 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDNG   78 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGCE
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccCe
Confidence            4445556777899999999999999999999999987652            1123333322    37999999999999


Q ss_pred             EEEEEEEeCCc--ceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEe-eeccCCCeEEEeeCCe-Eeeeccc---
Q psy12425        362 EYVCRAVNKGG--VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIP-FTGYPKPKITWYRDNE-VIESGGH---  434 (591)
Q Consensus       362 ~y~c~a~n~~g--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~-~~~~p~~~v~W~~~~~-~~~~~~~---  434 (591)
                      .|+|.|.|..|  .....+.|.|..+|.+...+   ....+..|+.+.|.|. +.+.|.+.+.|++++. .+.....   
T Consensus        79 ~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~---~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~  155 (212)
T 1f97_A           79 EYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTIS---VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTR  155 (212)
T ss_dssp             EEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEE---CCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CB
T ss_pred             EEEEEEEccCCCcccEEEEEEEEEcCCCCcccC---CccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccc
Confidence            99999999977  44667888888887764332   2245788999999999 7999999999999998 7754332   


Q ss_pred             ----eEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc--ceEEEEEecC
Q psy12425        435 ----FHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD--SAIVKIQISD  480 (591)
Q Consensus       435 ----~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~--~~~~~~~v~~  480 (591)
                          ...........|.|.++..+|.|.|+|.|.|..|..  +..+.|.|.+
T Consensus       156 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          156 AFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             SCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             cccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence                122333456789999999999999999999999998  6677777765

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.88  E-value=5.6e-21  Score=161.98  Aligned_cols=183  Identities=22%  Similarity=0.338  Sum_probs=143.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC-CceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |..+.+.+|+++.|.|.+.+.|.+.+.|+|++..+... .++++.. .+....|.|.+++.+|+|.|+|.+.|..|....
T Consensus        11 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~   90 (197)
T 2j8h_A           11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG   90 (197)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             CCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeE
Confidence            56789999999999999999999999999999998764 4555543 445579999999999999999999998877665


Q ss_pred             EEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEE
Q psy12425         80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY  159 (591)
Q Consensus        80 ~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  159 (591)
                      .+.|.|...|..                                                                    
T Consensus        91 ~~~l~V~~~p~~--------------------------------------------------------------------  102 (197)
T 2j8h_A           91 TASLEVEVPAKI--------------------------------------------------------------------  102 (197)
T ss_dssp             EEEEEEEEEEEE--------------------------------------------------------------------
T ss_pred             EEEEEEcCCCcC--------------------------------------------------------------------
Confidence            555555310000                                                                    


Q ss_pred             EEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEE
Q psy12425        160 LFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV  239 (591)
Q Consensus       160 ~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~  239 (591)
                                                                         ..+                          
T Consensus       103 ---------------------------------------------------~~~--------------------------  105 (197)
T 2j8h_A          103 ---------------------------------------------------HLP--------------------------  105 (197)
T ss_dssp             ---------------------------------------------------CCS--------------------------
T ss_pred             ---------------------------------------------------CCC--------------------------
Confidence                                                               000                          


Q ss_pred             EeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC
Q psy12425        240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC  319 (591)
Q Consensus       240 ~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~  319 (591)
                                                                            .+...+....+..|+.+.|.|.+.+.
T Consensus       106 ------------------------------------------------------~~~~~~~~~~~~~g~~~~l~C~~~g~  131 (197)
T 2j8h_A          106 ------------------------------------------------------KTLEGMGAVHALRGEVVSIKIPFSGK  131 (197)
T ss_dssp             ------------------------------------------------------SCBTTBEEEEEETTCCCEEEEEEEEE
T ss_pred             ------------------------------------------------------ccccccCeEEEeCCCEEEEEEEEEec
Confidence                                                                  00000011235677888999999999


Q ss_pred             CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcc-eecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINS-VYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       320 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      |.+.+.|++++..+....++.+...+...+|.|.+ +...|.|.|+|.|.|..|.....+.|.|.
T Consensus       132 p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          132 PDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             SCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            99999999999998887888887777778999999 99999999999999999998888888775

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.88  E-value=1.4e-21  Score=177.35  Aligned_cols=254  Identities=14%  Similarity=0.167  Sum_probs=175.3

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+....+.+|+.+.|.|.+.+.    +.|++++..     ...+...+...+|.|.+++..|+|.|+|.|.|.
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   73 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGD   73 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEEccC
Confidence            57888888888889999999999999884    999965432     334444555679999999999999999999999


Q ss_pred             CcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCC--CeEEEeeC-CeEeeeccceEEEecCCeeEEE
Q psy12425        371 GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK--PKITWYRD-NEVIESGGHFHVETSERHAILT  447 (591)
Q Consensus       371 ~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~-~~~~~~~~~~~~~~~~~~~~l~  447 (591)
                      .|.....+.|.|..+|......  .....+.+|+.+.|.|.+.+ |.  +.+.|+++ +..+.....+.+.   ....|.
T Consensus        74 ~~~~~~~~~l~V~~~~~~~~~~--~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~---~~~~L~  147 (292)
T 4dkd_C           74 PLGGSAAIHLYVKDPARPWNVL--AQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFS---PWHGFT  147 (292)
T ss_dssp             ---CCEEECCEECCSSCCEEES--CSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECC---SSSCCE
T ss_pred             CCCcceEEEEEEcCcccccccc--CCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCccccc---CCceEE
Confidence            8888888899998877542211  23456789999999999987 44  78999997 5555444444332   233499


Q ss_pred             EeccCCCcceeEEEEEEcCCCcc-ceEEEEEecCCCC-CCCCCeee-----eecCCeeEEEeeccccCCCcceeeEEEEe
Q psy12425        448 IRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPD-PPQFPTVE-----DIGHDSLALVWRAPIWDGGSNITNYIVEK  520 (591)
Q Consensus       448 i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p~-~p~~~~~~-----~~~~~~v~l~W~~p~~~~~~~~~~y~v~~  520 (591)
                      |.++...|.|.|+|.|.|..|.. +..+.+.|...+. +|. +...     ...+..+.|.|....   ..+  .+.+.|
T Consensus       148 i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~-i~~~~~~~~~~~g~~v~l~C~~~~---~~~--~~~~~w  221 (292)
T 4dkd_C          148 IHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPA-LTLVPAELVRIRGEAAQIVCSASS---VDV--NFDVFL  221 (292)
T ss_dssp             ETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCE-EEEESSCBCCCSSSCEEEEEEEEE---SSS--CCEEEC
T ss_pred             ECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCe-EEccCCceeEecCCCEEEEEEecC---CCC--ceEEEE
Confidence            99999999999999999988865 4577888876332 222 1111     124677889988531   111  223333


Q ss_pred             eeCCCC----ceEEe-c--eeeeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425        521 REHPMS----SWIRV-G--NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP  565 (591)
Q Consensus       521 ~~~~~~----~~~~~-~--~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~  565 (591)
                      ...+..    .-... .  ......+.|.++...+.+.|+|.|.|..|....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  273 (292)
T 4dkd_C          222 QHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHST  273 (292)
T ss_dssp             CBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEE
T ss_pred             eCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCcee
Confidence            322211    00111 1  123358999999999999999999999997543

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.87  E-value=1.2e-19  Score=176.26  Aligned_cols=308  Identities=11%  Similarity=0.122  Sum_probs=174.4

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCC---CCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CC
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSL---PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PK  321 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~---~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~  321 (591)
                      ...|.|.+++..|.|.|.|.+.+..|...   .......+.+... ...+|.+..... ..+.+|+.+.|.|.+.|. |.
T Consensus        79 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~-~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~  156 (475)
T 1iga_A           79 TAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSA-SPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQ  156 (475)
T ss_pred             eEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccC-CCcCCeEEecCc-cccCCCCeEEEEEEEeeecCC
Confidence            35799999999999999999999765210   1112234444421 123455543322 223689999999999986 65


Q ss_pred             -C-eeEEecCCccCCCCCceEEE-EeCC----eEEEEEcceecccceEEEEEEEeCCcce-eeeeEEEEe----------
Q psy12425        322 -P-TISWLKGSREITPSARHHIF-AEGD----TYTLIINSVYGVDADEYVCRAVNKGGVK-STKAELIIM----------  383 (591)
Q Consensus       322 -~-~v~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~l~v~----------  383 (591)
                       + .|.|++++..........+. ..++    ...|.|..+...|.|.|+|.|.|..+.. ...+.+.|.          
T Consensus       157 ~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~  236 (475)
T 1iga_A          157 EPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPST  236 (475)
T ss_pred             CceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccc
Confidence             4 99999887532111000011 1111    1257888888899999999999988742 222222221          


Q ss_pred             --------cCCcc-cCCCCcccceeecCCCeEEEEEeeeccCC---CeEEEeeCCeEeeeccceE-EEe-cC---CeeEE
Q psy12425        384 --------TAPKF-NVPPRFRDTAYFDKGENVVVKIPFTGYPK---PKITWYRDNEVIESGGHFH-VET-SE---RHAIL  446 (591)
Q Consensus       384 --------~~p~~-~~~~~~~~~~~~~~g~~~~l~c~~~~~p~---~~v~W~~~~~~~~~~~~~~-~~~-~~---~~~~l  446 (591)
                              .+|.+ ..++.   ...+..|+.+.|.|.+.|.++   +.|.| . +..+....... ... .+   ....|
T Consensus       237 ~~~~~~~~~~p~v~~~~p~---~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L  311 (475)
T 1iga_A          237 PPTPSPSCCHPRLSLHRPA---LEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVL  311 (475)
T ss_pred             cccCCCCCCCcEEEEcCCC---hHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccCceECCCCCEEEEEEE
Confidence                    12222 11111   112478999999999998754   69999 4 33332111111 111 11   34579


Q ss_pred             EEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeeee------ecCCeeEEEeeccccCC-CcceeeEEEE
Q psy12425        447 TIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVED------IGHDSLALVWRAPIWDG-GSNITNYIVE  519 (591)
Q Consensus       447 ~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~------~~~~~v~l~W~~p~~~~-~~~~~~y~v~  519 (591)
                      .|.++..+|.|.|+|.|.|..|.......+.+.....+|. +.+..      ..+..+.|.|....+.. ...+.+|+- 
T Consensus       312 ~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~-v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~-  389 (475)
T 1iga_A          312 PGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE-VHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQG-  389 (475)
T ss_pred             EEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCe-EEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEEC-
Confidence            9999999999999999999999875555554322222332 11111      12445888887532111 112222221 


Q ss_pred             eeeCCCCceE-----Ee---cee---eeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425        520 KREHPMSSWI-----RV---GNT---RFTTMAITGLSPGHQYEFRVYAENVYGR  562 (591)
Q Consensus       520 ~~~~~~~~~~-----~~---~~~---~~~~~~i~~l~~~~~Y~~~v~A~n~~G~  562 (591)
                      ..........     ..   .++   ....+.|......+.+.|+|.|.|....
T Consensus       390 g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          390 SQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             CEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            1111111100     00   111   1234556666656689999999998764

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.87  E-value=5.6e-20  Score=157.51  Aligned_cols=189  Identities=20%  Similarity=0.248  Sum_probs=138.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEe-CCeEEEEEccc-CCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL-DDYIIIFIKEI-RKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~-~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.+.|+|+|..+.......+... +....|.|.++ +.+|+|.|+|.|.|..|....
T Consensus        13 p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~   92 (212)
T 2yd6_A           13 PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISV   92 (212)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEE
T ss_pred             cceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEE
Confidence            6788999999999999999999999999999999876543333332 34578999999 599999999999998887666


Q ss_pred             EEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEE
Q psy12425         80 TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY  159 (591)
Q Consensus        80 ~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  159 (591)
                      .+.|.|...+..|                                                                   
T Consensus        93 ~~~l~V~~~~~~~-------------------------------------------------------------------  105 (212)
T 2yd6_A           93 STRLTVLREDQIP-------------------------------------------------------------------  105 (212)
T ss_dssp             EEEEEEECGGGCC-------------------------------------------------------------------
T ss_pred             EEEEEEeccCccC-------------------------------------------------------------------
Confidence            6666654311000                                                                   


Q ss_pred             EEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEE
Q psy12425        160 LFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV  239 (591)
Q Consensus       160 ~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~  239 (591)
                                                    +                                                 
T Consensus       106 ------------------------------~-------------------------------------------------  106 (212)
T 2yd6_A          106 ------------------------------R-------------------------------------------------  106 (212)
T ss_dssp             ------------------------------T-------------------------------------------------
T ss_pred             ------------------------------C-------------------------------------------------
Confidence                                          0                                                 


Q ss_pred             EeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC
Q psy12425        240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC  319 (591)
Q Consensus       240 ~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~  319 (591)
                                                                         ..|.+...+....+..|+.+.|.|.+.|.
T Consensus       107 ---------------------------------------------------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~  135 (212)
T 2yd6_A          107 ---------------------------------------------------GFPTIDMGPQLKVVERTRTATMLCAASGN  135 (212)
T ss_dssp             ---------------------------------------------------TCCEEEECCCCEEEETTSCEEEEEEEECS
T ss_pred             ---------------------------------------------------CcceeecCCcceeEecCCCEEEEEEecCC
Confidence                                                               00111111112235567889999999999


Q ss_pred             CCCeeEEecCCccCCCC---CceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee-eeeEEEEecCCc
Q psy12425        320 PKPTISWLKGSREITPS---ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS-TKAELIIMTAPK  387 (591)
Q Consensus       320 p~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~-~~~~l~v~~~p~  387 (591)
                      |.+.+.|++++..+...   .++.....+....|.|.++..+|.|.|+|.|.|..|... ..+.|.+..++.
T Consensus       136 p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~  207 (212)
T 2yd6_A          136 PDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH  207 (212)
T ss_dssp             SCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             CCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEeccc
Confidence            99999999999887654   455566666678999999999999999999999999874 457777766553

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.87  E-value=3.4e-21  Score=166.09  Aligned_cols=186  Identities=24%  Similarity=0.419  Sum_probs=142.0

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCC--ceEEEEeCCeE--EEEEcceecccceEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTY--TLIINSVYGVDADEYVC  365 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~--~l~i~~~~~~d~g~y~c  365 (591)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ...+...++..  .+.|.+++..|+|.|+|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            468888888888889999999999999999999999999998876542  22222222221  23688999999999999


Q ss_pred             EEEeCCcce-eeeeEEEEec-CCcccCCCCcccceeecCCCeEEEEEee-eccCCCeEEEeeCCeEeeecc--------c
Q psy12425        366 RAVNKGGVK-STKAELIIMT-APKFNVPPRFRDTAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVIESGG--------H  434 (591)
Q Consensus       366 ~a~n~~g~~-~~~~~l~v~~-~p~~~~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~--------~  434 (591)
                      .+.|..|.. .....+.|.. +|.+...+   ....+..|+.+.|.|.+ .+.|.+.+.|++++..+....        +
T Consensus        87 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~---~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~  163 (217)
T 2vr9_A           87 VAKNRVGQAVSRHASLQIAVLRDDFRVEP---KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR  163 (217)
T ss_dssp             EEEETTEEEECCCEEEEECEECCSCSBCC---CCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCS
T ss_pred             EEecCCCccccccceEEEEEeCCCcEECC---CccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCc
Confidence            999998876 3456777765 34433333   34567889999999999 899999999999999887332        2


Q ss_pred             eEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCC
Q psy12425        435 FHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR  481 (591)
Q Consensus       435 ~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~  481 (591)
                      +.+.   ....|.|.++..+|.|.|+|.|.|..|....+..+.+...
T Consensus       164 ~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~  207 (217)
T 2vr9_A          164 VRIV---DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV  207 (217)
T ss_dssp             EEEE---TTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             EEec---CCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEe
Confidence            2222   2357999999999999999999999999866655555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.87  E-value=8.6e-22  Score=182.52  Aligned_cols=184  Identities=17%  Similarity=0.294  Sum_probs=150.1

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccce-EEEEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRAV  368 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~a~  368 (591)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.......  ......+|.|.++...|+| .|+|.|.
T Consensus       156 c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~~Y~C~a~  233 (347)
T 2ifg_A          156 CGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS--GGLPSLGLTLANVTSDLNRKNVTCWAE  233 (347)
T ss_dssp             CCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC--CCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             CCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc--eecccceEEEeeCChHHCCCeEEEEEE
Confidence            357888888888899999999999999999999999999886543221110  2234558999999999999 9999999


Q ss_pred             eCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEec-------C
Q psy12425        369 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS-------E  441 (591)
Q Consensus       369 n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-------~  441 (591)
                      |..|.....+.+.|..+|.+       ....+..|+.+.|.|.+.|.|.|.+.|+++|..+...........       .
T Consensus       234 n~~g~~~~~~~l~V~~~P~i-------~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~  306 (347)
T 2ifg_A          234 NDVGRAEVSVQVNVSFPASV-------QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV  306 (347)
T ss_dssp             ETTEECCEEECCCCBEEEEE-------EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCC
T ss_pred             cCCCCEEEEEEEEEcCCCee-------eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcc
Confidence            99999888888888887775       111235689999999999999999999999998875544433222       2


Q ss_pred             CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       442 ~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      ....|.|.++...|+|.|+|.|.|..|..+..+.+.|..+|
T Consensus       307 ~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          307 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             cceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            36789999999999999999999999999999999998765

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.87  E-value=4.7e-20  Score=155.05  Aligned_cols=80  Identities=26%  Similarity=0.371  Sum_probs=67.6

Q ss_pred             eeccccEEEEEEEcCCCCCeeEEec--CCccCC---CCCceEEEEeCCeEEEEEccee-cccceEEEEEEEeCCcceeee
Q psy12425        304 AIQNHNAQFQCTITGCPKPTISWLK--GSREIT---PSARHHIFAEGDTYTLIINSVY-GVDADEYVCRAVNKGGVKSTK  377 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~p~~~v~W~~--~~~~~~---~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~a~n~~g~~~~~  377 (591)
                      +.+|+.+.|.|.+.|.|.+.+.|++  ++..+.   ...++.+..++...+|.|.++. .+|.|.|+|.|.|..|.....
T Consensus       104 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~  183 (190)
T 2wv3_A          104 KNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVS  183 (190)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEE
T ss_pred             eeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeE
Confidence            5677889999999999999999999  665543   4567777777777799999999 799999999999999998888


Q ss_pred             eEEEEe
Q psy12425        378 AELIIM  383 (591)
Q Consensus       378 ~~l~v~  383 (591)
                      +.|.|.
T Consensus       184 ~~l~V~  189 (190)
T 2wv3_A          184 TVLRVR  189 (190)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888775

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.87  E-value=8.5e-21  Score=163.25  Aligned_cols=171  Identities=24%  Similarity=0.368  Sum_probs=138.5

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ...+.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+....         ...|.|.++...|+|.|+|.+.|
T Consensus        16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n   86 (218)
T 3k0w_A           16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN---------TSELIFNAVHVKDAGFYVCRVNN   86 (218)
T ss_dssp             ---CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC---------SSEEEETTCCGGGCEEEEEEEEC
T ss_pred             CCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC---------CCEEEEccCChhhCeEeEEEEEc
Confidence            356777888888889999999999999999999999999988776432         23799999999999999999999


Q ss_pred             CCcce-eeeeEEEEecCCc---------------ccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeecc
Q psy12425        370 KGGVK-STKAELIIMTAPK---------------FNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG  433 (591)
Q Consensus       370 ~~g~~-~~~~~l~v~~~p~---------------~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~  433 (591)
                      ..|.. +....|.|...+.               +...+   ....+..|+.+.|.|.+.+.|.+.+.|++++..+... 
T Consensus        87 ~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~-  162 (218)
T 3k0w_A           87 NFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP---TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-  162 (218)
T ss_dssp             TTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECC---CCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC-
T ss_pred             CCCCceeeEEEEEEEccCcccccccccccCCCceEEECC---CceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC-
Confidence            98755 5567888876532               22111   2356788999999999999999999999999877532 


Q ss_pred             ceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCc-cceEEEEEecCC
Q psy12425        434 HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM-DSAIVKIQISDR  481 (591)
Q Consensus       434 ~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~-~~~~~~~~v~~~  481 (591)
                              ....|.|.++...|.|.|+|.|.|..|. .+..+.|.|...
T Consensus       163 --------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          163 --------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             --------CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred             --------CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence                    3468999999999999999999999887 477778888764

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.87  E-value=1e-20  Score=178.76  Aligned_cols=264  Identities=16%  Similarity=0.090  Sum_probs=186.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |++..+.+|++++|.|.+.   .+.+.|++||..+...   +  ..+....|+|.++...|+|.|.|.+.+  +.....+
T Consensus       210 P~~~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i~~~---r--i~~~~~~L~I~nl~~sd~g~y~~~C~~--~~~i~~~  279 (488)
T 2q7n_A          210 PQDKVVLAGSNMTICCMSP---TKVLSGQIGNTLRPLI---H--LYGQTVAIHILNIPVSENSGTNIIFIT--DDDVYGT  279 (488)
T ss_dssp             CTTCEEESSCCCEEEECCS---SCEEEEEETTEECCCE---E--CSSSCEEEECCSCCCCCSSCEEEEEEE--SSCEEEE
T ss_pred             CCCCEEcCCCCEEEEEECC---CCEEEEEECCEECchh---h--ccceEEEEEEeCCCcccCCcEEEEEEc--CCeEEEE
Confidence            7888999999999999998   3599999999887544   2  244557899999999999888887763  2234468


Q ss_pred             EEEEecCCCCCCCCcceEEecCceEEEEecCCCCC--CCcceeeEEEEEEecCCC-ceEEEEee-cCcceEEEcCCcCCc
Q psy12425         82 TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYD--GGLKVTHYVVERRDISMP-HWICISTT-CHDTTFIVQGLTEGQ  157 (591)
Q Consensus        82 ~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~--~~~~~~~y~~~~~~~~~~-~~~~~~~~-~~~~~~~i~~l~~~~  157 (591)
                      .+.+..+|.+|.. +.........++++|.++...  +|..+..|.+.+...+.. .|...... .....+.+..+....
T Consensus       280 ~l~v~~pP~~P~n-l~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~~~~~~~ct~~l~~~~t  358 (488)
T 2q7n_A          280 VVFAGYPPDVPQK-LSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQE  358 (488)
T ss_dssp             EEEEECCCCCCCS-CEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSCCCSSCEEEEEECCSSCC
T ss_pred             EEEeeCCCCCCcc-cEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccccCCceEEEEEcCCCCcc
Confidence            8888889988887 556666778999999987755  345678899988643221 12111100 233456665544468


Q ss_pred             EEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccE
Q psy12425        158 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQ  237 (591)
Q Consensus       158 ~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~  237 (591)
                      .|.|+|.|.|..|.+.. .  ..+. .....+|.+|..+.+.......+.|+|.+|...+ ..+..|.+.++..+...|.
T Consensus       359 ~Y~f~V~A~N~~G~~~S-~--~~~~-~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~~-g~~l~YeV~Yr~~~~~~w~  433 (488)
T 2q7n_A          359 IHNFTLTGRNPLGQAQS-A--VVIN-VTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFT-KINLLCQIEICKANSKKEV  433 (488)
T ss_dssp             CCEEEEEEEETTEEEEE-E--EECC-GGGTBCCCCCEEEEEEECSTTCEEEEEEEEEECS-SSEEEEEEEEBCTTSCCEE
T ss_pred             EEEEEEEEEeCCCCccc-e--EEEE-ecCCCCCCCCeEEEEEecCCCEEEEEEeCCCCCC-CcceEEEEEEEECCCCCce
Confidence            99999999999887432 1  1111 1123467788878877778889999999985443 4678999999988776664


Q ss_pred             E-EEeeecCCcee--eecCcccCCcEEEEEEEEcCCCCCCCCCCcceE
Q psy12425        238 R-VNVAICAPSQI--NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSV  282 (591)
Q Consensus       238 ~-~~~~~~~~~~~--~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~  282 (591)
                      . ..........+  .+.+|.++..|.++++|.+ .|.+.++..+..+
T Consensus       434 ~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v  480 (488)
T 2q7n_A          434 RNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEK  480 (488)
T ss_dssp             EEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCC
T ss_pred             EEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCE
Confidence            3 22211112345  8999999999999999999 7876555544333

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.87  E-value=2.2e-21  Score=166.81  Aligned_cols=189  Identities=23%  Similarity=0.400  Sum_probs=141.7

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCc-----eEEEEeCCeE--EEEEcceecccceE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR-----HHIFAEGDTY--TLIINSVYGVDADE  362 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~--~l~i~~~~~~d~g~  362 (591)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....     .....++...  .|.|.++...|+|.
T Consensus         7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            3578888888888899999999999999999999999999887754321     1222223222  24456779999999


Q ss_pred             EEEEEEeCCcce-eeeeEEEEecCCc-ccCCCCcccceeecCCCeEEEEEee-eccCCCeEEEeeCCeEeeeccceEEEe
Q psy12425        363 YVCRAVNKGGVK-STKAELIIMTAPK-FNVPPRFRDTAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVIESGGHFHVET  439 (591)
Q Consensus       363 y~c~a~n~~g~~-~~~~~l~v~~~p~-~~~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~  439 (591)
                      |+|.|.|..|.. .....+.|...|. +...+   ....+..|+.+.|.|.+ .+.|.+.+.|++++..+..........
T Consensus        87 Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~---~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~  163 (212)
T 2v9r_A           87 YVCVARNYLGEAVSHDASLEVAILRDDFRQNP---SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR  163 (212)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEECSSCSBCC---CCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE
T ss_pred             EEEEEECCCCceeecceEEEEEeccccceeCC---CceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc
Confidence            999999998876 4567777766433 22222   34567889999999999 899999999999999887544332221


Q ss_pred             cCCeeEEEEeccCCCcceeEEEEEEcCCCccc-eEEEEEecCCCCC
Q psy12425        440 SERHAILTIRDASNVDTAPYRVVAENDLGMDS-AIVKIQISDRPDP  484 (591)
Q Consensus       440 ~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~-~~~~~~v~~~p~~  484 (591)
                         ...|.|.++...|.|.|+|.|.|..|... ..+.|.|..+|..
T Consensus       164 ---~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~  206 (212)
T 2v9r_A          164 ---GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF  206 (212)
T ss_dssp             ---TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             ---CCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchH
Confidence               35899999999999999999999999864 4588888887743

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.87  E-value=7.2e-21  Score=169.42  Aligned_cols=237  Identities=13%  Similarity=0.173  Sum_probs=159.8

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcC-CCCC--eeEEecCCccCCCCCceEEEEeCCeEEEEEcce---ecccceE-
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITG-CPKP--TISWLKGSREITPSARHHIFAEGDTYTLIINSV---YGVDADE-  362 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~g~-  362 (591)
                      +.+|.+..+   ..+.+|+.+.|.|.+.+ .|.+  .+.|++++..+..    .+...+.  .+.+..+   ...|.|. 
T Consensus         4 ~~~p~~~~~---~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g~g   74 (265)
T 2oz4_A            4 ATPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEGTQ   74 (265)
T ss_dssp             SSCCEEECC---SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCEEE
T ss_pred             CCCCccccC---ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCCcc
Confidence            345555543   35789999999999998 7776  9999999988764    3333444  3444444   6778775 


Q ss_pred             -EEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecC
Q psy12425        363 -YVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE  441 (591)
Q Consensus       363 -y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  441 (591)
                       |+|.|.|..|.......|.|...|.....   .....+.+|+.+.|.|.+.  |.+.+.|  +|..+..        .+
T Consensus        75 ~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~---~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~--------~~  139 (265)
T 2oz4_A           75 RLTCAVILGNQSQETLQTVTIYSFPAPNVI---LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP--------LG  139 (265)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCCCCEEE---ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSC--------CS
T ss_pred             eEEEEEecCCCCcEEEEEEEEeCCCCceee---cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccC--------CC
Confidence             99999999999888899999874432111   1234567899999999998  9999999  7766521        23


Q ss_pred             CeeEEEEeccCCCcceeEEEEEEcCC-Cccc---eEEEEEecCCCCCCCCC---eeeeecCCeeEEEeeccccCCCccee
Q psy12425        442 RHAILTIRDASNVDTAPYRVVAENDL-GMDS---AIVKIQISDRPDPPQFP---TVEDIGHDSLALVWRAPIWDGGSNIT  514 (591)
Q Consensus       442 ~~~~l~i~~~~~~~~g~y~c~a~n~~-g~~~---~~~~~~v~~~p~~p~~~---~~~~~~~~~v~l~W~~p~~~~~~~~~  514 (591)
                      ....|.|..+..+|.|.|+|.|.|.. |...   ..+.|.|..+|......   ......+..+.|.|....    .+..
T Consensus       140 ~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g----~P~p  215 (265)
T 2oz4_A          140 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWG----NPLP  215 (265)
T ss_dssp             SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEE----ESCC
T ss_pred             CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECcc----CCCC
Confidence            45678899999999999999998654 7664   67778887766442211   222334677888887421    1211


Q ss_pred             eEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCC
Q psy12425        515 NYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSD  564 (591)
Q Consensus       515 ~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~  564 (591)
                      .  +.|...+.   ......     .+..+...+.+.|+|.|.|.+|...
T Consensus       216 ~--i~W~~~~~---~~~~~g-----~~~~v~~~d~G~Y~C~a~N~~G~~~  255 (265)
T 2oz4_A          216 E--LKCLKDGT---FPLPIG-----ESVTVTRDLEGTYLCRARSTQGEVT  255 (265)
T ss_dssp             E--EEEEETTT---EECCTT-----SCEECCGGGCEEEEEEEEETTEEEE
T ss_pred             e--EEEEECCc---ccCCCC-----cEEEeehhhCeEEEEEEECCCCcEE
Confidence            2  22222221   111111     1123778999999999999998643

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.86  E-value=1.2e-20  Score=159.38  Aligned_cols=170  Identities=13%  Similarity=0.111  Sum_probs=126.5

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+.. .+.+|+.+.|.|.+.+ +.+.+.|++++..+..... ..........|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYRSP   80 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEE-CCCSSSSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccc-ccccCCceEEEEeccCCcccCceEEEEEeCC
Confidence            46777777666 7889999999999998 6789999999887653211 1111234568999999999999999999999


Q ss_pred             Ccc--eeeeeEEEEecC---CcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccce-EEEecCCee
Q psy12425        371 GGV--KSTKAELIIMTA---PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF-HVETSERHA  444 (591)
Q Consensus       371 ~g~--~~~~~~l~v~~~---p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~  444 (591)
                      .|.  .+....|.|...   |.+...+.    ..+..|+.++|.|.+.+. .+.+.|+++|..+...... .........
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~~~~~~~----~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~  155 (196)
T 3p2t_A           81 VGWSQPSDPLELVMTGAYSKPTLSALPS----PLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQA  155 (196)
T ss_dssp             TEEBCCCCCEEEEEECSSCCCEEEEESC----SEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEE
T ss_pred             CcccCCCccEEEEecCCCCCCEEEeCCc----ceecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcce
Confidence            883  355567777643   33332221    256789999999999884 5689999999866433221 222233567


Q ss_pred             EEEEeccCCCcceeEEEEEEcCCC
Q psy12425        445 ILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       445 ~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      .|.|.++..+|+|.|+|.|.|..+
T Consensus       156 ~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          156 EFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEECSCCGGGCEEEEEEEECGGG
T ss_pred             EEEeCCCcccCCCeEEEEEEcCCC
Confidence            899999999999999999999986

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.86  E-value=5e-20  Score=156.24  Aligned_cols=182  Identities=15%  Similarity=0.233  Sum_probs=145.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+....++.+...+...+|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus        14 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~   93 (197)
T 3lcy_A           14 MKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSS   93 (197)
T ss_dssp             CCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEE
Confidence            56789999999999999999999999999999999888888888888888999999999999999999988776554444


Q ss_pred             EEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEE
Q psy12425         82 TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLF  161 (591)
Q Consensus        82 ~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~  161 (591)
                      .|.|...|..                                                                      
T Consensus        94 ~l~v~~~p~~----------------------------------------------------------------------  103 (197)
T 3lcy_A           94 KLLLQATPQF----------------------------------------------------------------------  103 (197)
T ss_dssp             EEEEEEEEEE----------------------------------------------------------------------
T ss_pred             EEEEEcCCCC----------------------------------------------------------------------
Confidence            4333211000                                                                      


Q ss_pred             EEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEe
Q psy12425        162 HVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV  241 (591)
Q Consensus       162 ~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~  241 (591)
                                                 .                           .                        
T Consensus       104 ---------------------------~---------------------------~------------------------  105 (197)
T 3lcy_A          104 ---------------------------H---------------------------P------------------------  105 (197)
T ss_dssp             ---------------------------C---------------------------T------------------------
T ss_pred             ---------------------------C---------------------------C------------------------
Confidence                                       0                           0                        


Q ss_pred             eecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCC
Q psy12425        242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK  321 (591)
Q Consensus       242 ~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~  321 (591)
                                                   ..                 ..+       ....+..|+.+.|.|.+.+.|.
T Consensus       106 -----------------------------~~-----------------~~~-------~~~~~~~g~~~~l~C~~~~~p~  132 (197)
T 3lcy_A          106 -----------------------------GY-----------------PLK-------EKYYGAVGSTLRLHVMYIGRPV  132 (197)
T ss_dssp             -----------------------------TS-----------------CCC-------SEEEEETTSCEEEEEEEEEESC
T ss_pred             -----------------------------Cc-----------------cCC-------cceeecCCCeEEEEEEEeeeeC
Confidence                                         00                 000       0112345777899999999999


Q ss_pred             CeeEEecCCccCCCCCceEEEEeCCeEEEEEcceec-ccceEEEEEEEeCCcceeeeeEEEEec
Q psy12425        322 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYG-VDADEYVCRAVNKGGVKSTKAELIIMT  384 (591)
Q Consensus       322 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~c~a~n~~g~~~~~~~l~v~~  384 (591)
                      +.+.|++++..+....++.+...+....|.|.++.. +|.|.|+|.|.|..|.....+.|.|..
T Consensus       133 p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          133 PAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             CEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             CeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            999999999999888888887777778999999995 899999999999999998888888764

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.86  E-value=8e-21  Score=168.03  Aligned_cols=203  Identities=16%  Similarity=0.206  Sum_probs=125.5

Q ss_pred             cccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCC-----CCeeEEec
Q psy12425        254 LIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP-----KPTISWLK  328 (591)
Q Consensus       254 l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p-----~~~v~W~~  328 (591)
                      ++++|.|.|+|.|.   |....   ...+.+.     .++.+...+..+.+.+|+.+.|.|.+.+.|     .+.+.|++
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~---~~~~~~~-----~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k   79 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFT---NYWMNWL-----RELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLL   79 (254)
T ss_dssp             --------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEE
T ss_pred             ecCCccEEEEEcCc---hhhhh---hhhhhee-----eceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEE
Confidence            67889999999997   32221   1112111     256677767788899999999999999988     48999997


Q ss_pred             CC--ccC------------CCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeeeEEEEec---CCcccC
Q psy12425        329 GS--REI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAELIIMT---APKFNV  390 (591)
Q Consensus       329 ~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~---~p~~~~  390 (591)
                      +.  ..+            ....++.+...+...+|.|.+++.+|+|.|+|.|.|..+.. .....+.|..   +|.+..
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~  159 (254)
T 2c1o_A           80 QRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSI  159 (254)
T ss_dssp             ECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEE
T ss_pred             eCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEe
Confidence            43  211            11356666667778899999999999999999999986643 2234566653   343332


Q ss_pred             CCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCCeEeeeccc--eEEEecC-----CeeEEEEeccCCCcceeEEE
Q psy12425        391 PPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDNEVIESGGH--FHVETSE-----RHAILTIRDASNVDTAPYRV  461 (591)
Q Consensus       391 ~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~--~~~~~~~-----~~~~l~i~~~~~~~~g~y~c  461 (591)
                      .+.   ......|+.+.|.|.+.|. |. +.+.|+++|..+.....  .......     ....|.|.++..+|.|.|+|
T Consensus       160 ~~~---~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C  236 (254)
T 2c1o_A          160 FPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTC  236 (254)
T ss_dssp             ECC---CHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEE
T ss_pred             ecC---ChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEE
Confidence            111   1112357799999999884 44 46999999988765411  1111111     14689999999999999999


Q ss_pred             EEEcCCCcc
Q psy12425        462 VAENDLGMD  470 (591)
Q Consensus       462 ~a~n~~g~~  470 (591)
                      .|.|.....
T Consensus       237 ~a~n~~~~~  245 (254)
T 2c1o_A          237 EATHKTSTS  245 (254)
T ss_dssp             EEECTTCSS
T ss_pred             EEEcCCCCC
Confidence            999987654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.86  E-value=7.3e-21  Score=160.60  Aligned_cols=170  Identities=12%  Similarity=0.100  Sum_probs=117.3

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+. ..+.+|+.+.|.|.+.+.|. .+.|++++..+..... ..........|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            4 SKATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             CBCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            4677776665 46889999999999998876 9999999887643211 0011234568999999999999999999998


Q ss_pred             Ccce--eeeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccce-EEE-ecCCe
Q psy12425        371 GGVK--STKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF-HVE-TSERH  443 (591)
Q Consensus       371 ~g~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~-~~~-~~~~~  443 (591)
                      .|..  +..+.|.|..   +|.+...+.    ..+..|+.+.|.|.+.+.| +.+.|+++|..+...... ... .....
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~i~~~~~----~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~  155 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTGFYNKPTLSALPS----PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQ  155 (196)
T ss_dssp             TEECBCCCCEEEEEECSSCCCEEEC---------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEE
T ss_pred             CCcCCcCccEEEEecCCCCCCeEEccCC----ccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCce
Confidence            7754  3457777776   344433321    3567899999999999998 999999999876432211 111 11235


Q ss_pred             eEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        444 AILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       444 ~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      ..|.|.+++.+|+|.|+|.|.|..+
T Consensus       156 ~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          156 ALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             eEEEeeecCcccCeeEEEEEEccCC
Confidence            8899999999999999999999865

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.86  E-value=4.3e-20  Score=155.90  Aligned_cols=174  Identities=18%  Similarity=0.222  Sum_probs=126.8

Q ss_pred             eeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      +.+|+.+.|.|.+.|.|.+.+.|++...... .  ......+....|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        13 ~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~-~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~   89 (202)
T 1vca_A           13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-N--GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (202)
T ss_dssp             EETTSCEEEEEEEESCSSCEEEEEETTCCCC-S--SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcCCCcEEEEEeecCCCCCeEEEECCCCCCc-c--ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEE
Confidence            4589999999999999999999988422111 1  122344556689999999999999999999999888888899998


Q ss_pred             cCCcccCCCCcccceeecCCCeEEEEEeeeccCC---CeEEEeeCCeEeeeccceEEE----ecCCeeEEEEeccCCCcc
Q psy12425        384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK---PKITWYRDNEVIESGGHFHVE----TSERHAILTIRDASNVDT  456 (591)
Q Consensus       384 ~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~---~~v~W~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~~~  456 (591)
                      .+|......   ....+..|+.+.|.|.+.+.++   +.|.|++++..+.........    .......|.|.....+|.
T Consensus        90 ~~p~~~~~~---~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~  166 (202)
T 1vca_A           90 SFPKDPEIH---LSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIG  166 (202)
T ss_dssp             BCCSCCEEE---ESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTT
T ss_pred             eCCCCCEeC---CceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCC
Confidence            877543211   1145688999999999988643   379999999887543210000    011234567888888899


Q ss_pred             eeEEEEEEcCCCcc-------ceEEEEEecCCCC
Q psy12425        457 APYRVVAENDLGMD-------SAIVKIQISDRPD  483 (591)
Q Consensus       457 g~y~c~a~n~~g~~-------~~~~~~~v~~~p~  483 (591)
                      |.|+|.|.|..|..       +.+..|.|..+|.
T Consensus       167 g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          167 KVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             CEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             CeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            99999999998863       3566777776663

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.85  E-value=1.7e-20  Score=155.10  Aligned_cols=167  Identities=14%  Similarity=0.182  Sum_probs=131.0

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCe-eEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+..          ....|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~   74 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQTN   74 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEECS
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEee
Confidence            3568888887777899999999999999988776 889999876542          22379999999999999999999


Q ss_pred             eCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC-eEEEeeCCeEeeeccceEEEecCCeeEEE
Q psy12425        369 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP-KITWYRDNEVIESGGHFHVETSERHAILT  447 (591)
Q Consensus       369 n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~  447 (591)
                      |..+  +....+.|..++.....+    ...+..|+.+.|.|.+.+.+++ .+.|+++|..+..        ......|.
T Consensus        75 n~~~--s~~~~l~V~~~~~~~~~~----~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~--------~~~~~~L~  140 (175)
T 1fnl_A           75 LSTL--SDPVQLEVHIGWLLLQAP----RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY--------FHHNSDFH  140 (175)
T ss_dssp             SSCC--CCCEEEEEECSSEEEECS----CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE--------EEECCCEE
T ss_pred             CCcc--cccEEEEEeCCCceeeCC----CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC--------CCCCCEEE
Confidence            8544  556677777554433322    2346789999999999987665 9999999987732        12357899


Q ss_pred             EeccCCCcceeEEEEEEcCCCc-cceEEEEEecC
Q psy12425        448 IRDASNVDTAPYRVVAENDLGM-DSAIVKIQISD  480 (591)
Q Consensus       448 i~~~~~~~~g~y~c~a~n~~g~-~~~~~~~~v~~  480 (591)
                      |.++..+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus       141 i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          141 IPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            9999999999999999997664 46677777754

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.85  E-value=1.2e-19  Score=153.37  Aligned_cols=75  Identities=16%  Similarity=0.276  Sum_probs=63.3

Q ss_pred             CceeeeecCCeEEEEEEec-cCCCceEEEEECCEEeecCC--ceeEEEeCC-------eEEEEEcccCCCCceEEEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYA-GDQPMEVSLTKNGRVVQSDD--RFKFTVLDD-------YIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~-------~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      |.++.+.+|+++.|.|.+. |.|.+.+.|+|+|..+....  ++++....+       ...|.|.+++.+|+|.|+|.+.
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   88 (195)
T 2c5d_C            9 PGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF   88 (195)
T ss_dssp             CCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEE
T ss_pred             hhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEE
Confidence            7789999999999999999 89999999999999987763  444544443       5689999999999999999998


Q ss_pred             cCCee
Q psy12425         72 NSSGS   76 (591)
Q Consensus        72 n~~g~   76 (591)
                      |..|.
T Consensus        89 ~~~~~   93 (195)
T 2c5d_C           89 LGHQT   93 (195)
T ss_dssp             ETTEE
T ss_pred             eCCCc
Confidence            76443

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.85  E-value=3.8e-21  Score=165.65  Aligned_cols=176  Identities=15%  Similarity=0.286  Sum_probs=133.7

Q ss_pred             cccceeccccEEEEEEEcCCC----CCeeEEecCC----------------ccCCC-----CCceEEEE---eCCeEEEE
Q psy12425        300 RNANAIQNHNAQFQCTITGCP----KPTISWLKGS----------------REITP-----SARHHIFA---EGDTYTLI  351 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p----~~~v~W~~~~----------------~~~~~-----~~~~~~~~---~~~~~~l~  351 (591)
                      ..+.+.+|+.+.|.|.+.+.+    .+.+.|++.+                ..+..     ..+..+..   .....+|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            456688999999999999877    4699998843                22221     22333321   11345799


Q ss_pred             EcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEee-eccCCCeEEEeeCCe--E
Q psy12425        352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF-TGYPKPKITWYRDNE--V  428 (591)
Q Consensus       352 i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~--~  428 (591)
                      |.+++.+|+|.|+|.|.|..|.......|.|..+|.+...+   ....+..|+.+.|.|.+ .+.|.+.+.|++++.  .
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~---~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~  164 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCF---VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQT  164 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEE---EESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCC
T ss_pred             EccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceee---eecceecCCcEEEEecCCCCCCCCEEEEEECCCCCc
Confidence            99999999999999999999988888999999887754322   22336789999999999 899999999999543  3


Q ss_pred             eeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        429 IESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       429 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      +.....    .......|.|.++..+|.|.|+|.|.|..|..+..+.|.|..||
T Consensus       165 ~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~  214 (214)
T 3jz7_A          165 MPTPWL----AEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS  214 (214)
T ss_dssp             CCGGGG----GGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred             cCccce----eccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence            322111    12235599999999999999999999999999999999887543

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.85  E-value=8.6e-21  Score=162.45  Aligned_cols=178  Identities=13%  Similarity=0.094  Sum_probs=124.0

Q ss_pred             ccccceecc--ccEEEEEEEcCCCCCeeEEecC---CccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcc
Q psy12425        299 LRNANAIQN--HNAQFQCTITGCPKPTISWLKG---SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV  373 (591)
Q Consensus       299 ~~~~~~~~g--~~~~l~c~~~~~p~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~  373 (591)
                      +..+.+.+|  +.+.|.|.+.+ |.+.+.|++.   +..+....++.....+   .|.|.++..+|+|.|+|.|.|..+.
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~---~l~I~~v~~~D~G~Y~C~a~n~~~~   89 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSYMISYAGMVFCEAKINDES   89 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTT---EEEEEGGGTTTCSEEEEEEC----C
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCc---cEEEccCChhcCceEEEEEEECCee
Confidence            356778899  99999999987 7789999874   5555544444332222   6999999999999999999985444


Q ss_pred             eee-eeEEEEec--CCcccCCCCcccceeecCCCeEEEEEeeeccCC--CeEEEeeCCeEeeeccc-eEEEe-------c
Q psy12425        374 KST-KAELIIMT--APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK--PKITWYRDNEVIESGGH-FHVET-------S  440 (591)
Q Consensus       374 ~~~-~~~l~v~~--~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~~-~~~~~-------~  440 (591)
                      ... ...|.|..  +|.+...+.  ....+..|+.+.|.|.+.|.|.  +.+.|++++..+..... .....       .
T Consensus        90 ~~s~~~~l~v~~~~~p~~~~~~~--~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~  167 (213)
T 2x1w_L           90 YQSIMYIVVVVGYRIYDVVLSPS--HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK  167 (213)
T ss_dssp             EECCCEEEEECBCCEEEEEEESC--SCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCE
T ss_pred             EEEEEEEEEEeCCcccceEEcCC--CCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccce
Confidence            322 25666643  222222221  2346789999999999998654  57999999876432111 00000       1


Q ss_pred             CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        441 ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       441 ~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus       168 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          168 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             EEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             eeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence            224679999999999999999999999999999999998766

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=5.5e-20  Score=153.81  Aligned_cols=166  Identities=17%  Similarity=0.332  Sum_probs=131.8

Q ss_pred             cceeccccEEEEEEEcCCCCC--eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeE
Q psy12425        302 ANAIQNHNAQFQCTITGCPKP--TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE  379 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~  379 (591)
                      ..+.+|+.+.|.|.+.+.|.+  .+.|++++..+.......     ....|.|.  ..+|+|.|+|.|.|   .......
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~-----~~~~l~i~--~~~d~G~Y~C~~~n---~~~~~~~   77 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-----QKTEFKVD--SDDQWGEYSCVFLP---EPMGTAN   77 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC-----SEEEEEEC--GGGCCEEEEEEEES---TTSCEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC-----CcEEEEEe--chhhCeEEEEEEEC---CcCcEEE
Confidence            346889999999999988777  899999988775543221     23356666  68999999999998   3346778


Q ss_pred             EEEecCCcccCCCCcccceeecCCCeEEEEEeeeccC-CCeEEEee---CCeEee-e--ccceEEEecCCeeEEEEeccC
Q psy12425        380 LIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYP-KPKITWYR---DNEVIE-S--GGHFHVETSERHAILTIRDAS  452 (591)
Q Consensus       380 l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~---~~~~~~-~--~~~~~~~~~~~~~~l~i~~~~  452 (591)
                      |.|..+|.+...+   ....+..|+.+.|.|.+.|.| .+.+.|++   ++.... .  ..++.+...+....|.|.++.
T Consensus        78 l~V~~~P~~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  154 (184)
T 3b5h_A           78 IQLHGPPRVKAVK---SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLN  154 (184)
T ss_dssp             EEECCSCCCEESC---SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCC
T ss_pred             EEEecCCceeecC---CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecc
Confidence            8898888876554   334578899999999999999 89999999   454433 2  256777766778899999999


Q ss_pred             -CCcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        453 -NVDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       453 -~~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                       ..|.|.|+|.|.|..|.....+.|.|..
T Consensus       155 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          155 MEADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             TTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             ccccCceEEEEEEeCCCcceEEEEEEEec
Confidence             9999999999999999998888888753

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.85  E-value=3.7e-21  Score=165.00  Aligned_cols=180  Identities=19%  Similarity=0.334  Sum_probs=137.5

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccC------------CCCCceEEEEeCCeEEEEEcceeccc
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI------------TPSARHHIFAEGDTYTLIINSVYGVD  359 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d  359 (591)
                      ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....++.+..    .+|.|.++..+|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~~~d   79 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVTRED   79 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCCTTS
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCCHHH
Confidence            455666667788999999999999999999999999976652            1123333322    379999999999


Q ss_pred             ceEEEEEEEeCCcc--eeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEee-eccCCCeEEEeeCCeEeeeccce-
Q psy12425        360 ADEYVCRAVNKGGV--KSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVIESGGHF-  435 (591)
Q Consensus       360 ~g~y~c~a~n~~g~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~-  435 (591)
                      +|.|+|.+.|..|.  ......|.|..+|.+...+.   ...+..|+.+.|.|.+ .+.|.+.+.|++++..+...... 
T Consensus        80 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~  156 (209)
T 1nbq_A           80 TGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNI---PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST  156 (209)
T ss_dssp             CSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCC---BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSS
T ss_pred             CcEEEEEEecCCCCccceEEEEEEEecCCcCCCccc---ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccc
Confidence            99999999998663  35567778888877654332   3457889999999997 89999999999999877654321 


Q ss_pred             ------EEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc--ceEEEEEe
Q psy12425        436 ------HVETSERHAILTIRDASNVDTAPYRVVAENDLGMD--SAIVKIQI  478 (591)
Q Consensus       436 ------~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~--~~~~~~~v  478 (591)
                            ..........|.|.++..+|.|.|+|.|.|..|..  +..+.|.|
T Consensus       157 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          157 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             SSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             eeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence                  11122346789999999999999999999999988  44444444

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.85  E-value=2.4e-20  Score=159.65  Aligned_cols=173  Identities=14%  Similarity=0.255  Sum_probs=130.8

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecCCccCCC-------------------CCceEEEEeCCeEEEEEcceecccc
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP-------------------SARHHIFAEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d~  360 (591)
                      ....+.+|+.+.|.|...+.+.+.+.|++++.....                   ..+..+..++   +|.|.+++.+|+
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D~   83 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG---SLLFQMITMKDM   83 (208)
T ss_dssp             ESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTS---CEEECSCCGGGC
T ss_pred             ccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCC---eEEEccccccCC
Confidence            346688999999999988888999999987542211                   1122222222   699999999999


Q ss_pred             eEEEEEEEeCC-cceeeeeEEEEecCCc---ccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceE
Q psy12425        361 DEYVCRAVNKG-GVKSTKAELIIMTAPK---FNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH  436 (591)
Q Consensus       361 g~y~c~a~n~~-g~~~~~~~l~v~~~p~---~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~  436 (591)
                      |.|+|.+.|.. +.......|.|..++.   +...+   . . +..|+.+.|.|.+.+.| |.+.|++++..+....++.
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~---~-~-~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~  157 (208)
T 3r4d_A           84 GVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN---T-T-VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMT  157 (208)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESC---S-S-CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEE
T ss_pred             eEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCC---c-e-EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeE
Confidence            99999999985 5556677788876533   22211   1 1 67899999999999976 8999999999987766665


Q ss_pred             EEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEEEecCCCC
Q psy12425        437 VETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRPD  483 (591)
Q Consensus       437 ~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p~  483 (591)
                      +..  ....|.|.++...|.|.|+|.|.|..|.. +..+.|.+..+|.
T Consensus       158 ~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          158 LSQ--NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             EET--TTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred             EcC--CCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence            543  34789999999999999999999999987 6778888877654

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.85  E-value=1e-20  Score=156.69  Aligned_cols=169  Identities=14%  Similarity=0.199  Sum_probs=130.5

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+|.+...+....+.+|+.+.|.|.+.+.+.+ .+.|++++..+...          ..+|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcCC
Confidence            46777777777889999999999999998875 69999998876532          23799999999999999999988


Q ss_pred             CCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeee-ccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEE
Q psy12425        370 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFT-GYPKPKITWYRDNEVIESGGHFHVETSERHAILTI  448 (591)
Q Consensus       370 ~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i  448 (591)
                      ..+  +....+.|..++.+...+    ...+..|+.+.|.|.+. +.|.+.+.|+++|..+..        ......|.|
T Consensus        73 ~~~--s~~~~l~V~~~~~~~~~~----~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~--------~~~~~~L~i  138 (176)
T 1f2q_A           73 VNE--SEPVYLEVFSDWLLLQAS----AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY--------WYENHNISI  138 (176)
T ss_dssp             SSC--CCCEEEEEECSSEEEEES----CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS--------CCCSSEEEE
T ss_pred             ccc--cccEEEEEeCcceeecCC----cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEee--------ecCCCeEEE
Confidence            554  445667776444433222    23567899999999995 667789999999987632        234678999


Q ss_pred             eccCCCcceeEEEEEEcCCC-ccceEEEEEecCCCC
Q psy12425        449 RDASNVDTAPYRVVAENDLG-MDSAIVKIQISDRPD  483 (591)
Q Consensus       449 ~~~~~~~~g~y~c~a~n~~g-~~~~~~~~~v~~~p~  483 (591)
                      .++..+|+|.|+|.|.|..| ..+..+.|.|..+|.
T Consensus       139 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          139 TNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             CCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            99999999999999999644 446778888887764

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.85  E-value=1.4e-21  Score=187.59  Aligned_cols=305  Identities=11%  Similarity=0.163  Sum_probs=177.3

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC-CCC-e
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC-PKP-T  323 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~  323 (591)
                      ...|.|.+++..|.|.|+|.|.|..+..   .....+.+... ...+|.+........+.+|+.+.|.|.+.|. |.+ .
T Consensus        77 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~---~~~~~l~V~~~-~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~  152 (434)
T 1igy_B           77 TANIHLSSLTSDDSAVYYCVREGEVPYW---GQGTTVTVSSA-KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT  152 (434)
T ss_dssp             BBCEEECSBCGGGCSEECCCCSSSSCCC---CCCEECEECCS-CCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCE
T ss_pred             EEEEEECCCChHHCEEEEEEEEcccccc---CCceEEEEccC-CCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeE
Confidence            3479999999999999999998853221   12234444321 1234554433333346789999999999886 776 9


Q ss_pred             eEEecCCccCCCCCceEEEEeCC---eEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEec---------C---Ccc
Q psy12425        324 ISWLKGSREITPSARHHIFAEGD---TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT---------A---PKF  388 (591)
Q Consensus       324 v~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~---------~---p~~  388 (591)
                      +.|++++..+...........+.   ...|.|.++..+| |.|+|.|.|..|.......+.+..         .   |.+
T Consensus       153 v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v  231 (434)
T 1igy_B          153 VTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSV  231 (434)
T ss_dssp             EEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCE
T ss_pred             EEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEE
Confidence            99999886532100000111111   1368898998888 999999999988754443332221         0   222


Q ss_pred             c-CCCCcccceeecCCCeEEEEEeeeccC----CCeEEEeeCCeEeeeccceEEE-ec----CCeeEEEEeccCCCccee
Q psy12425        389 N-VPPRFRDTAYFDKGENVVVKIPFTGYP----KPKITWYRDNEVIESGGHFHVE-TS----ERHAILTIRDASNVDTAP  458 (591)
Q Consensus       389 ~-~~~~~~~~~~~~~g~~~~l~c~~~~~p----~~~v~W~~~~~~~~~~~~~~~~-~~----~~~~~l~i~~~~~~~~g~  458 (591)
                      . .++...  ..+..|+.+.|.|.+.|.+    .+.|.|++++..+......... ..    .....|.|.++..+|.|.
T Consensus       232 ~~~~p~~~--~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  309 (434)
T 1igy_B          232 FIFPPKPK--DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKE  309 (434)
T ss_dssp             EEECCCHH--HHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCC
T ss_pred             EEeCCChH--HhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCc
Confidence            1 122111  1167899999999999884    4589999999776432211111 01    124578999999999999


Q ss_pred             EEEEEEcCCCccceEEEEEe-cCCCCCCCCCeee-----eecCCeeEEEeeccccCCCcceeeEEEEeeeCCCC--ceEE
Q psy12425        459 YRVVAENDLGMDSAIVKIQI-SDRPDPPQFPTVE-----DIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS--SWIR  530 (591)
Q Consensus       459 y~c~a~n~~g~~~~~~~~~v-~~~p~~p~~~~~~-----~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~--~~~~  530 (591)
                      |+|.|.|..|.......+.+ ...+.+|. +.+.     ......+.|.|......   + ..-.+.|...+..  ....
T Consensus       310 Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~-v~~~~~~~~~~~~~~~~L~C~~~g~~---P-~~~~v~W~k~g~~l~~~~~  384 (434)
T 1igy_B          310 FKCRVNSAAFPAPIEKTISKTKGKPRAPQ-VYTIPPPKEQMAKDKVSLTCMITDFF---P-EDITVEWQSDGQAPENYKN  384 (434)
T ss_dssp             CBCCBCCSSCSSCCCCCCCCCCSCCBCCC-CEEECCCSSSSSSSEEEEEEEEEEEB---C-SCEEEEEEETTSCCSCCEE
T ss_pred             EEEEEECCCCCCceeEEEeccCCCCcCCE-EEEECCCHHHhcCCcEEEEEEEEeeE---C-CCeEEEEEECCEecCCcee
Confidence            99999999997633333322 11222332 1211     12345688888753211   1 0112333322211  0000


Q ss_pred             -----ecee---eeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425        531 -----VGNT---RFTTMAITGLSPGHQYEFRVYAENVYGR  562 (591)
Q Consensus       531 -----~~~~---~~~~~~i~~l~~~~~Y~~~v~A~n~~G~  562 (591)
                           ..++   ....+.|......+.+.|+|+|.|....
T Consensus       385 ~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          385 TQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             CCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             ccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence                 0111   1123455544445578999999998754

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.85  E-value=1.2e-20  Score=160.60  Aligned_cols=176  Identities=22%  Similarity=0.263  Sum_probs=131.8

Q ss_pred             eeccccceeccccEEEEEE-EcCCCC-CeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        297 VPLRNANAIQNHNAQFQCT-ITGCPK-PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~-~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      ..+....+.+|+.+.|.|. +.+.|. +.+.|++++..+...............+|.|.++..+|+|.|+|.+.|..+..
T Consensus        13 ~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~   92 (201)
T 3s97_C           13 EERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITK   92 (201)
T ss_dssp             SCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTE
T ss_pred             CCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCc
Confidence            3445677899999999999 888898 99999999877743222222222223479999999999999999999977655


Q ss_pred             ee---eeEEEEec-------CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCee
Q psy12425        375 ST---KAELIIMT-------APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA  444 (591)
Q Consensus       375 ~~---~~~l~v~~-------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  444 (591)
                      ..   ...+.+..       +|.+...+   ....+..|+.+.|.|.+.+.|.+.+.|++++..+....  .+.  ....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--~~~--~~~~  165 (201)
T 3s97_C           93 SVFSKFIPLIPIPERTTKPYPADIVVQF---KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EIS--TSGA  165 (201)
T ss_dssp             EEECCCEEEEEECCSSCCCEEEEEEEEC---CCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC--EEE--TTTT
T ss_pred             chhhcccceeeccccccCCCCCceEecC---CceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce--eec--CCCC
Confidence            43   23333321       22222222   14567889999999999999999999999998775432  222  2456


Q ss_pred             EEEEeccCCCcceeEEEEEEcCCCccceEEEEEec
Q psy12425        445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS  479 (591)
Q Consensus       445 ~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~  479 (591)
                      .|.|.++..+|.|.|+|.|.|..|..+..+.|.|+
T Consensus       166 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          166 VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            89999999999999999999999999888888775

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.84  E-value=3e-20  Score=155.98  Aligned_cols=83  Identities=13%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             ceeeeecCCeEEEEEE---eccCCCceEEEEECCEEee-----------------cCCceeEEEeCCeEEEEEcccCCCC
Q psy12425          3 NALYIPEGDNTKVKIF---YAGDQPMEVSLTKNGRVVQ-----------------SDDRFKFTVLDDYIIIFIKEIRKED   62 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~---~~~~p~~~v~W~~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~~~~~d   62 (591)
                      +++++..|++++|.|.   +.+.|.+.|.|+|+|..+.                 ...++.+....+...|.|.+++.+|
T Consensus         1 q~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            1 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   80 (203)
T ss_dssp             -CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence            4689999999999995   5678999999999873211                 1234455566777899999999999


Q ss_pred             ceEEEEEEEcCCeeeEEEEEEEE
Q psy12425         63 AGDYTVNLSNSSGSVSGTFTINI   85 (591)
Q Consensus        63 ~g~Y~c~~~n~~g~~~~~~~l~v   85 (591)
                      +|.|+|.|.|..|..+..+.|.|
T Consensus        81 ~G~Y~C~a~n~~g~~~~~~~l~V  103 (203)
T 4fa8_A           81 DGNYLCRMKLGETEVTKQEHLSV  103 (203)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEe
Confidence            99999999998777665555554

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.84  E-value=1.9e-19  Score=170.49  Aligned_cols=374  Identities=15%  Similarity=0.127  Sum_probs=140.3

Q ss_pred             CCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEE--eec--CcceEEEcCCcCCcEEEEEEEEEc
Q psy12425         92 PIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIS--TTC--HDTTFIVQGLTEGQEYLFHVMAVN  167 (591)
Q Consensus        92 p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~--~~~~~~i~~l~~~~~y~~~~~a~n  167 (591)
                      |.+ +.+... ...+.|+|.++... ...+. |.|+++..+...|....  ...  ....++..+|.++..|.|||.|.|
T Consensus        11 P~n-v~~~~~-~~~~~L~W~p~~~~-~~~i~-Y~V~y~~~~~~~W~~~~~c~~~~~~~~~~t~~~l~~~~~Y~~rV~A~n   86 (414)
T 3se4_A           11 PQK-VEVDII-DDNFILRWNRSDES-VGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEK   86 (414)
T ss_dssp             CCC-CCEEEE-TTEEEEC-----------CE-EEEEEEESSCCCCEEEEEEEEESCSCEECCSSCCCTTSCEEEEEEEEE
T ss_pred             Cce-eEEEEE-CCceEEEEcCCCCC-CCCeE-EEEEEEECCCCCcEECcCccCCCCCEEECCcccccCCCcEEEEEEEee
Confidence            444 455554 45689999998854 34666 99999987777887542  222  334455567899999999999999


Q ss_pred             cCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCC------cceEEEEEEeeecCCCccEEEEe
Q psy12425        168 ENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGG------SRIQGYWIDKHEVGSDAWQRVNV  241 (591)
Q Consensus       168 ~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~------~~~~~y~~~~~~~~~~~~~~~~~  241 (591)
                       .+.+..+.........  .....+|. +.+. ....++.|+|. |...++      ..+.+|.+.+...+........ 
T Consensus        87 -~~~S~~s~~~~~~~~~--~~~~~pP~-v~~~-~~~~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~y~~~~~~~~~~~~-  159 (414)
T 3se4_A           87 -ENTSSWYEVDSFTPFR--KAQIGPPE-VHLE-AEDKAIVIHIS-PGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIE-  159 (414)
T ss_dssp             -TTEEEEEECCCBCHHH--HCCCCCCE-EEEE-ECSSCEEEEEE-CSSSSCTTTGGGGSSCEEEEEEEETTTCCEEEEE-
T ss_pred             -CCcCCCEecCceeecc--cceeCCCe-EEEE-EcCCEEEEEEE-cCCCCCceeeeecCcEEEEEEEEECCCCceEEEe-
Confidence             5544432211111110  01223343 4444 34568999999 653332      2567899999887665543322 


Q ss_pred             eecCCceeeecCcccCCcEEEEEEEEcC--CCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCC
Q psy12425        242 AICAPSQINIPNLIEGRQYEFRVYAQNE--AGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC  319 (591)
Q Consensus       242 ~~~~~~~~~i~~l~~~~~~~y~c~a~n~--~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~  319 (591)
                        .....+.|.+|.++..|.++++|.|.  .|.+..+... .+......+..+|.                .|.|.... 
T Consensus       160 --~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~-~~~t~~~~~~~~P~----------------~v~~~~~~-  219 (414)
T 3se4_A          160 --NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVH-CIKTTVENELPPPE----------------NIEVSVQN-  219 (414)
T ss_dssp             --EECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCE-EEECCSCCSSCCCE----------------EEEEEEET-
T ss_pred             --cCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCccc-ccccccccccCCCC----------------ccEEEEec-
Confidence              24578999999999999999999994  4555544322 22221111112221                22222221 


Q ss_pred             CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCccccee
Q psy12425        320 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAY  399 (591)
Q Consensus       320 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~  399 (591)
                      ....+.|......    ..                        |............             .          
T Consensus       220 ~~~~l~W~pp~~~----~~------------------------Y~v~y~~~~~~~~-------------~----------  248 (414)
T 3se4_A          220 QNYVLKWDYTYAN----MT------------------------FQVQWLHAFLKRN-------------P----------  248 (414)
T ss_dssp             TEEEEEEECSSSS----CE------------------------EEEEEEESGGGSC-------------C----------
T ss_pred             CCeEEEECCCCCC----eE------------------------EEEEEEehhcccc-------------c----------
Confidence            1234667542110    01                        1111110000000             0          


Q ss_pred             ecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEe-ccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        400 FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIR-DASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       400 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                         ++         +    .-.|..-.    ..      .........+. ++.....|.+++.|.|..|.+..+....+
T Consensus       249 ---~~---------~----~~~w~~~~----~~------~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~  302 (414)
T 3se4_A          249 ---GN---------H----LYKWKQIP----DC------ENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKF  302 (414)
T ss_dssp             ---CC---------------CCCCBCS----TT------TTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEE
T ss_pred             ---cc---------c----ccCceECC----Cc------cCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccccc
Confidence               00         0    00111000    00      00011222232 57777779999999999988754433333


Q ss_pred             c----CCCCCCCCCeeeeecCCeeEEEeeccccCCC-----cceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCce
Q psy12425        479 S----DRPDPPQFPTVEDIGHDSLALVWRAPIWDGG-----SNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQ  549 (591)
Q Consensus       479 ~----~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~-----~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  549 (591)
                      .    .+|.+|. +.+.. ..+++.|+|++|...++     ..+.+|.|.|...+........ .....+.|.+|.|++.
T Consensus       303 ~t~~~~~~~pP~-l~~~~-~~~si~v~W~~P~~~~~~~~~~~~~~~Y~v~y~~~~~~~~~~~~-~~~~~~~l~~L~p~t~  379 (414)
T 3se4_A          303 DTEIQAFLLPPV-FNIRS-LSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKII-EKKTDVTVPNLKPLTV  379 (414)
T ss_dssp             ETTCC---------------------------------------------------------------------------
T ss_pred             cchhccccCCCe-EEEEE-CCCeEEEEEECCCCccccchhhcCCeEEEEEEEECCCCceEEEE-ecCCeEEeCCCCCCCe
Confidence            2    2456777 77764 45799999998865443     2568898887655432211122 3557899999999999


Q ss_pred             EEEEEEEEcC----CcCCCCCCCcceEEecc
Q psy12425        550 YEFRVYAENV----YGRSDPSTTSDLITTYG  576 (591)
Q Consensus       550 Y~~~v~A~n~----~G~~~~s~~~~~~~t~~  576 (591)
                      |.|+|+|.+.    .|.|+.|....+.|+++
T Consensus       380 Y~~~V~A~~~~~~~~g~g~~S~~~~~~T~~~  410 (414)
T 3se4_A          380 YCVKARAHTMDEKLNKSSVFSDAVCEKTKPG  410 (414)
T ss_dssp             -------------------------------
T ss_pred             EEEEEEEEecccccCCCCCCCCCEeEEeCCC
Confidence            9999999993    58999998876655443

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.84  E-value=2.1e-20  Score=158.10  Aligned_cols=170  Identities=15%  Similarity=0.120  Sum_probs=119.7

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+. ..+.+|+.+.|.|.+.+.|. .+.|++++..+....... ........|.|.++..+|+|.|+|.|.|.
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYYGSD   80 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc-ccCCcccEEEECCCCHHHCeEEEEEEECC
Confidence            4677776665 47889999999999998876 799999987653111100 00112237999999999999999999998


Q ss_pred             C-cc--eeeeeEEEEecC---CcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccc-eEEE-ecCC
Q psy12425        371 G-GV--KSTKAELIIMTA---PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH-FHVE-TSER  442 (591)
Q Consensus       371 ~-g~--~~~~~~l~v~~~---p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~-~~~~-~~~~  442 (591)
                      . |.  .+..+.|.|...   |.+...+    ...+..|+.+.|.|.+.+. .+.+.|+++|..+..... +... ....
T Consensus        81 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~----~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~  155 (198)
T 1ugn_A           81 TAGRSESSDPLELVVTGAYIKPTLSAQP----SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSS  155 (198)
T ss_dssp             TTEECCCCCCEEEEEECSSCCCEEEEES----CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CC
T ss_pred             CCCcccCCccEEEEEcccccCCccccCC----ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcc
Confidence            7 63  355677888762   3332222    2456789999999999988 789999999987643221 1111 1234


Q ss_pred             eeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        443 HAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       443 ~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      ...|.|.++..+|+|.|+|.|.|..+
T Consensus       156 ~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          156 RAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             eeEEEecccCcccCeEEEEEEEeCCC
Confidence            68999999999999999999999876

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.84  E-value=3.7e-17  Score=153.32  Aligned_cols=302  Identities=18%  Similarity=0.202  Sum_probs=205.8

Q ss_pred             EeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEE
Q psy12425         46 VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYV  125 (591)
Q Consensus        46 ~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~  125 (591)
                      ...+...+.|.+|.+...|.|++.|.|..|..... ...+...+.+|.. +.+......++.|+|.+|.   +..+.+|.
T Consensus        53 ~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~-~~~~~~~~~~p~~-l~~~~~~~~si~l~W~~p~---~~~~~~Y~  127 (368)
T 1fnf_A           53 VHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPI-SDTIIPAVPPPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFL  127 (368)
T ss_dssp             ECTTCCEEECCCCCTTSCEEEEEEEEETTEECCCE-EEEECCCCCCCEE-EEEESCCSSCEEEEEECCT---TCCCSEEE
T ss_pred             ecCCcCEEEECCCCCCCEEEEEEEEEcCCCccCce-eeeecCCCcCCce-eEEEEcCCCeEEEEeeCCC---CCCCcEEE
Confidence            34445688999999999999999999998865432 3333333333333 5566667889999999885   35688999


Q ss_pred             EEEEecCCC-ceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCC
Q psy12425        126 VERRDISMP-HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGD  204 (591)
Q Consensus       126 ~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  204 (591)
                      +.+...... .|...........+.+.+|.+++.|.|+|.|.|..|.+......    .   ...|.+|..+.+......
T Consensus       128 v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~----~---~~~~~~P~~l~~~~~~~~  200 (368)
T 1fnf_A          128 VRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR----Q---KTGLDSPTGIDFSDITAN  200 (368)
T ss_dssp             EEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEE----E---ECCCCCCEEEEEESCCSS
T ss_pred             EEEEECCCCCccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeEee----e---cCCCCCCCccEEEEccCC
Confidence            999876543 56665555677899999999999999999999998876543211    1   124455666677777889


Q ss_pred             eEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEE
Q psy12425        205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQI  284 (591)
Q Consensus       205 ~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~  284 (591)
                      ++.|+|.++.    ..+.+|.+.+...+................+.+.+|.++..|.|++.|.|..|.+..+.    ...
T Consensus       201 sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~----~~~  272 (368)
T 1fnf_A          201 SFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI----GQQ  272 (368)
T ss_dssp             EEEEEEECCS----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEE----EEE
T ss_pred             EEEEEEeCCC----CCcCEEEEEEecCCCCCCccEEEeCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCccc----ccc
Confidence            9999999862    36889999998765432222233334667899999999999999999999988765421    111


Q ss_pred             cCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCC--eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceE
Q psy12425        285 KDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP--TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       285 ~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  362 (591)
                      ..  .+.+|..+.    ........+.|.|.....+..  .|.|...+..   .........+....+.+.+|.+...|.
T Consensus       273 ~t--~p~~P~~l~----~~~~~~~sv~l~W~~p~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~p~t~Y~  343 (368)
T 1fnf_A          273 ST--VSDVPRDLE----VVAATPTSLLISWDAPAVTVRYYRITYGETGGN---SPVQEFTVPGSKSTATISGLKPGVDYT  343 (368)
T ss_dssp             EC--CCCSCEEEE----EEEEETTEEEEEEECCSSCCSEEEEEEEETTCC---SCCEEEEEETTCCEEEECSCCTTCCEE
T ss_pred             cC--CCCCCCeeE----EEecCCCEEEEEeeCCCCccceEEEEEEECCCC---CccEEEEcCCCeeEEEecCCCCCCEEE
Confidence            11  123332221    112345678888876443322  3444432211   112233344555689999999999999


Q ss_pred             EEEEEEeCCcceee
Q psy12425        363 YVCRAVNKGGVKST  376 (591)
Q Consensus       363 y~c~a~n~~g~~~~  376 (591)
                      |++.|.|..|.+..
T Consensus       344 ~~V~A~~~~G~g~~  357 (368)
T 1fnf_A          344 ITVYAVTGRGDSPA  357 (368)
T ss_dssp             EEEEEECCCSSSCC
T ss_pred             EEEEEeCCCCcCcc
Confidence            99999999987643

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.84  E-value=2.3e-17  Score=155.09  Aligned_cols=302  Identities=14%  Similarity=0.144  Sum_probs=207.4

Q ss_pred             EeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEE
Q psy12425         46 VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYV  125 (591)
Q Consensus        46 ~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~  125 (591)
                      ...+...+.|.+|.+...|.|++.|.|..|.............| +|.. +.+......++.|+|.++.   +..+.+|.
T Consensus        54 ~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~p-~p~~-l~~~~~~~~si~l~W~~~~---~~~i~~Y~  128 (375)
T 3t1w_A           54 VHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVP-QLTD-LSFVDITDSSIGLRWTPLN---SSTIIGYR  128 (375)
T ss_dssp             EETTCCEEEECCCCTTCCEEEEEEEEETTEECCCEEEEECCCCC-CCSC-CEEECCCSSEEEEECCCCC---CTTEEEEE
T ss_pred             cCCCccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEEeeEcCCCC-CCce-EEEEecCCCeEEEEEECCC---CCCceEEE
Confidence            34455689999999999999999999988765443333333333 2333 5667778899999999875   45789999


Q ss_pred             EEEEecCCCc-eEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCC
Q psy12425        126 VERRDISMPH-WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGD  204 (591)
Q Consensus       126 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  204 (591)
                      +.+...+... +...........+.+.+|.+++.|.|+|.|.|..|.+..+.....    .   .+.+|..+.+.....+
T Consensus       129 v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~----t---~~~~p~~l~~~~~~~~  201 (375)
T 3t1w_A          129 ITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQ----T---AVPPPTDLRFTNIGPD  201 (375)
T ss_dssp             EEEEESSSCCSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEEEEE----C---CCCCCEEEEEESCCSS
T ss_pred             EEEEECCCCCceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeeeeee----c---CCCCCceeEEEecccC
Confidence            9998765543 344444567789999999999999999999999998766543211    1   2336666777777889


Q ss_pred             eEEEEEecCCCCCCcceEEEEEEeeecCC-CccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEE
Q psy12425        205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGS-DAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQ  283 (591)
Q Consensus       205 ~v~l~w~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~  283 (591)
                      ++.|+|.++.   +..+.+|.+.++..+. ..|..... ......+.+.+|.++..|.|++.|.|..|.+....    ..
T Consensus       202 si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~----~~  273 (375)
T 3t1w_A          202 TMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSI-SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR----GR  273 (375)
T ss_dssp             CEEEEEECCS---SCCCCEEEEEEEEGGGTTCCEEEEE-CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE----EE
T ss_pred             EEEEEEcCCC---CCCccEEEEEEEeCCCCCCcEEEEc-CCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCcee----eE
Confidence            9999999863   3468899999987654 34444433 23458899999999999999999999888765321    11


Q ss_pred             EcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCC--eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccce
Q psy12425        284 IKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP--TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       284 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  361 (591)
                      ...  .+.+|.-+..    .......+.|.|.....+..  .|.|...+..   .........+....+.|.+|.+...|
T Consensus       274 ~~t--~p~~P~~l~~----~~~~~~sv~l~W~~p~~~~~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~p~t~Y  344 (375)
T 3t1w_A          274 QKT--GLDSPTGIDF----SDITANSFTVHWIAPRATITGYRIRHHPEHFS---GRPREDRVPHSRNSITLTNLTPGTEY  344 (375)
T ss_dssp             EEC--CCCCCEEEEE----ESCCSSCEEEEEECCSSCCSEEEEEEEETTCC---SSCEEEEEETTCCEEEECSCCTTCEE
T ss_pred             Eec--CCCCCCccEe----eeccCCEEEEEECCCCcceeeEEEEEEECCCC---CcceeEEcCCCccEEEECCCCCCCEE
Confidence            111  1233332211    11235678888876432222  3455443221   12223344455568899999999999


Q ss_pred             EEEEEEEeCCcceee
Q psy12425        362 EYVCRAVNKGGVKST  376 (591)
Q Consensus       362 ~y~c~a~n~~g~~~~  376 (591)
                      .|++.|.|..|.+..
T Consensus       345 ~~~V~A~~~~G~s~p  359 (375)
T 3t1w_A          345 VVSIVALNGREESPL  359 (375)
T ss_dssp             EEEEEEEETTEECCC
T ss_pred             EEEEEEECCCCCCCc
Confidence            999999999887743

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.83  E-value=3.7e-19  Score=150.47  Aligned_cols=70  Identities=20%  Similarity=0.317  Sum_probs=62.7

Q ss_pred             ceeeeecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeC--CeEEEEEcccCCCCceEEEEEEEc
Q psy12425          3 NALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLD--DYIIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      .+++|.+|+.+.|.|.+.+ .|.|.|.|+|||+.|..+.++++....  +..+|.|.+++++|+|.|+|.|.|
T Consensus        10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A           10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            4688999999999999965 799999999999999988888877654  557899999999999999999998

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.83  E-value=1.8e-19  Score=148.51  Aligned_cols=164  Identities=16%  Similarity=0.279  Sum_probs=128.7

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCC-CCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCP-KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ++|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+.....          .+.+.++..+|+|.|+|.+.|
T Consensus         3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~   72 (170)
T 3ry4_A            3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQ   72 (170)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEETT
T ss_pred             CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEeC
Confidence            456777777777899999999999999987 679999999988765422          356778999999999999987


Q ss_pred             CCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeee-ccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEE
Q psy12425        370 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFT-GYPKPKITWYRDNEVIESGGHFHVETSERHAILTI  448 (591)
Q Consensus       370 ~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i  448 (591)
                      ..  .+....|.|..++.+...+.    ..+..|+.+.|.|.+. +.|.+.+.|+++|..+..        ......|.|
T Consensus        73 ~~--~s~~~~l~v~~~~~~~~~~~----~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~--------~~~~~~L~i  138 (170)
T 3ry4_A           73 TS--LSDPVHLTVLFEWLVLQTPH----LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF--------SHLDPTFSI  138 (170)
T ss_dssp             SB--CCCCEEEEEECCSEEEECSC----SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE--------ESSCCEEEE
T ss_pred             CC--ceEeEEEEEECCceEecCCC----ceeecCCeEEEEEECCCCCCCceEEEEECCeEccc--------cCCCCeEEE
Confidence            43  34467777877665444332    3567899999999995 557799999999987642        234678999


Q ss_pred             eccCCCcceeEEEEEEcCCCc-cceEEEEEe
Q psy12425        449 RDASNVDTAPYRVVAENDLGM-DSAIVKIQI  478 (591)
Q Consensus       449 ~~~~~~~~g~y~c~a~n~~g~-~~~~~~~~v  478 (591)
                      .++..+|.|.|+|.|.|..|. .+..+.|.|
T Consensus       139 ~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          139 PQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            999999999999999999987 455666655

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.83  E-value=1e-18  Score=147.93  Aligned_cols=192  Identities=43%  Similarity=0.775  Sum_probs=157.9

Q ss_pred             ecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEE
Q psy12425         86 TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMA  165 (591)
Q Consensus        86 ~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a  165 (591)
                      .+.|.+|.. +.+......++.|+|.+|...++..+..|.+.++......|...........+.+.+|.+++.|.|+|.|
T Consensus         3 ~~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a   81 (197)
T 3lpw_A            3 MDTPGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLA   81 (197)
T ss_dssp             CCSCCCCEE-EEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEEEECSSEEEECCCCTTCEEEEEEEE
T ss_pred             CCCCCCCCC-cEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeecCCCccEEEEcCCCCCCEEEEEEEE
Confidence            356677765 5677788999999999987777778999999999988888888777778899999999999999999999


Q ss_pred             EccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecC
Q psy12425        166 VNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA  245 (591)
Q Consensus       166 ~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~  245 (591)
                      .|..|.+..+......+.   ...|.+|..+.+......++.|+|.+|...++..+.+|.+.++..+...|.....  ..
T Consensus        82 ~~~~g~~~~s~~~~~~t~---~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~  156 (197)
T 3lpw_A           82 ENEYGIGLPAETAESVKA---SERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT--VK  156 (197)
T ss_dssp             EETTEECCCEECSSCEES---CCCCCCCSCEEEEEECSSCEEEEECCCSCCTTSCCCEEEEEEEETTCSCCEEEEE--ES
T ss_pred             EcCccccCCCCCccceec---CCCCCCCcccEEEeccCCeEEEEecCCCcCCCCcccEEEEEEEeCCCCceEEeec--cc
Confidence            999998877654333333   3467778888888888999999999987766668999999999888777776543  35


Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEE
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQ  283 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~  283 (591)
                      ...+.+.+|.++..|.|+++|.|..|.+.++..+..+.
T Consensus       157 ~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~~v~  194 (197)
T 3lpw_A          157 VTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVI  194 (197)
T ss_dssp             SSEEEECCCCTTCEEEEEEEEEETTEECCCEECSSCEE
T ss_pred             ccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCcccEe
Confidence            78899999999999999999999999887766655544

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.83  E-value=8e-20  Score=156.10  Aligned_cols=181  Identities=13%  Similarity=0.111  Sum_probs=128.6

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeE--EEEEcceecccceEEEEEEE
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY--TLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~c~a~  368 (591)
                      .+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++..+..... .........  .|.|.+++..|+|.|+|.|.
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   84 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQYR   84 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence            4677776655 46889999999999987 6789999998776532111 110111223  79999999999999999999


Q ss_pred             eCCcce--eeeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCe
Q psy12425        369 NKGGVK--STKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH  443 (591)
Q Consensus       369 n~~g~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  443 (591)
                      |..|..  +....|.|..   +|.+...+    ...+.+|+.++|.|.+.+.|.+.+.|+++|..+...    .......
T Consensus        85 n~~~~~~~s~~~~l~V~~~~~~P~i~~~p----~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~----~~~~~~~  156 (218)
T 1uct_A           85 IGHYRFRYSDTLELVVTGLYGKPFLSADR----GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHP  156 (218)
T ss_dssp             ETTTEEEECCCEEEEEECSSCCCEEEESS----CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSS
T ss_pred             cCCCceeecCCEEEEEcCcccCCEEEeCC----CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc----ccCCCcc
Confidence            987643  3446777765   33333222    235689999999997777788999999999866431    1233457


Q ss_pred             eEEEEeccCCCcceeEEEEEEcCCC-----ccceEEEEEecCCC
Q psy12425        444 AILTIRDASNVDTAPYRVVAENDLG-----MDSAIVKIQISDRP  482 (591)
Q Consensus       444 ~~l~i~~~~~~~~g~y~c~a~n~~g-----~~~~~~~~~v~~~p  482 (591)
                      ..|.|.++..+|+|.|+|.|.|..+     ..+..+.|.|.+.+
T Consensus       157 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          157 ANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             EEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred             CEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence            8999999999999999999998642     23566677776543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.83  E-value=6.4e-19  Score=152.59  Aligned_cols=177  Identities=16%  Similarity=0.164  Sum_probs=119.8

Q ss_pred             cccceeccccEEEEEEEcCCCCC---eeEEecCCccCC-----------------CCCceEEEE---eCCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKP---TISWLKGSREIT-----------------PSARHHIFA---EGDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~---~v~W~~~~~~~~-----------------~~~~~~~~~---~~~~~~l~i~~~~  356 (591)
                      ..+.+.+|+++.|.|.+.+.+.+   .|.|++++....                 ...+.....   ..+..+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            44668899999999999876554   699998654210                 011222221   1235689999999


Q ss_pred             cccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeec-cCCCeEEEeeCCeEeeecc-c
Q psy12425        357 GVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKPKITWYRDNEVIESGG-H  434 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~~~-~  434 (591)
                      .+|+|.|+|.|.|..|.......+.+...+.  ..   .....+..|..+.|.|.+.| .|.|.|.|++++..+.... .
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~--~~---~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~  166 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAALGS--DL---HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEA  166 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCC--CC---EEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEEC
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeecccee--cc---cceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCce
Confidence            9999999999999888766555554433222  11   23345678999999999988 5999999998654443222 2


Q ss_pred             eEEEec-CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCC
Q psy12425        435 FHVETS-ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR  481 (591)
Q Consensus       435 ~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~  481 (591)
                      ...... +....+.+..+...|.|.|+|.|.|..|.....+.|.+.+|
T Consensus       167 ~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          167 PVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             CCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             EEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            222222 22344556678889999999999999999999999988664

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.83  E-value=3.5e-19  Score=152.94  Aligned_cols=84  Identities=23%  Similarity=0.402  Sum_probs=74.7

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEe-CCeEEEEEcceecccceEEEEEEEeCCcceeeeeE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE  379 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~  379 (591)
                      ...+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+... +....|.|.++..+|.|.|+|.|.|..|.......
T Consensus       126 ~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~  205 (212)
T 2r15_A          126 VVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFT  205 (212)
T ss_dssp             EEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEE
Confidence            34577899999999999999999999999999988888877766 66789999999999999999999999999888888


Q ss_pred             EEEec
Q psy12425        380 LIIMT  384 (591)
Q Consensus       380 l~v~~  384 (591)
                      |.|..
T Consensus       206 l~V~~  210 (212)
T 2r15_A          206 VSVFI  210 (212)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            88864

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.83  E-value=1.7e-20  Score=156.79  Aligned_cols=163  Identities=10%  Similarity=0.184  Sum_probs=125.2

Q ss_pred             cceeccccEEEEEEEcCCCCCeeEEecCCccCCC--------------CCceEEEE---eCCeEEEEEcceecccceEEE
Q psy12425        302 ANAIQNHNAQFQCTITGCPKPTISWLKGSREITP--------------SARHHIFA---EGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      +.+.+|+.+.|.|.+.+.|.+.+.|++++.....              ..+..+..   ..+..+|.|.+++.+|+|.|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   84 (184)
T 2ny1_B            5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   84 (184)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEE
Confidence            4578999999999999999999999998753110              11222211   223456999999999999999


Q ss_pred             EEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCee
Q psy12425        365 CRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA  444 (591)
Q Consensus       365 c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  444 (591)
                      |.+.|..|    .+.|.|...+   .+    ....+..|+.+.|.|.+.+.|.+.+.|++++..+.          ....
T Consensus        85 C~~~~~~~----~~~l~V~~~~---~~----~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~----------~~~~  143 (184)
T 2ny1_B           85 CEVEDQKE----EVQLLVFGLT---AN----SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI----------QGGK  143 (184)
T ss_dssp             EEETTEEE----EEEEEEEEEE---ES----SCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE----------EESS
T ss_pred             EEEEcCCC----cEEEEEEEec---CC----CCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc----------cCce
Confidence            99988755    4455555321   11    12356889999999999999999999999876541          1457


Q ss_pred             EEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCC
Q psy12425        445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP  485 (591)
Q Consensus       445 ~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p  485 (591)
                      .|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+.|.+|
T Consensus       144 ~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~  184 (184)
T 2ny1_B          144 TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS  184 (184)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC--
T ss_pred             EEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCCC
Confidence            89999999999999999999999999999999999888654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.83  E-value=5.8e-19  Score=154.90  Aligned_cols=84  Identities=23%  Similarity=0.432  Sum_probs=67.7

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCce-eEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRF-KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|+|..+....+. .........+|.|.+++.+|+|.|+|.+.|..|.....
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~  101 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT  101 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEE
Confidence            45689999999999999999999999999999998765433 22333444589999999999999999999887766555


Q ss_pred             EEEEE
Q psy12425         81 FTINI   85 (591)
Q Consensus        81 ~~l~v   85 (591)
                      +.+.|
T Consensus       102 ~~l~V  106 (241)
T 3grw_A          102 YTLDV  106 (241)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55555

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.83  E-value=6.6e-20  Score=152.75  Aligned_cols=158  Identities=15%  Similarity=0.122  Sum_probs=119.1

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+.. .+.+|+.+.|.|.+.+ +.+.+.|++++...       . .  ....|.|.+++.+|+|.|+|.|.|.
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-------~-~--~~~~L~i~~v~~~D~G~Y~C~a~n~   74 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-------Y-Q--DQAVLFIPAMKRSLAGRYRCSYQNG   74 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC-------E-E--SSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc-------c-C--cccEEEECcCChhhCceEEEEEEcC
Confidence            56777776654 7889999999999988 78899999987651       1 1  2237999999999999999999998


Q ss_pred             Ccce--eeeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeE
Q psy12425        371 GGVK--STKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI  445 (591)
Q Consensus       371 ~g~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  445 (591)
                      .|..  +....|.|..   +|.+...+    ...+..|+.+.|.|.+.+.+ +.+.|+++|..+.....    .......
T Consensus        75 ~g~~~~s~~~~l~V~~~~~~p~i~~~p----~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~----~~~~~~~  145 (184)
T 2gi7_A           75 SLWSLPSDQLELVATGVFAKPSLSAQP----GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP----ERWYRAS  145 (184)
T ss_dssp             TEEBCCCCCEEEEEESSSCCCEEEEEC----CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC----CEEEEES
T ss_pred             CCccCCCCCEEEEecCcCCCCEEEeCC----CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec----CCCceEE
Confidence            8743  4456677744   23333222    23457899999999987655 69999999987654211    1224567


Q ss_pred             EEEeccCCCcceeEEEEEEcCCCc
Q psy12425        446 LTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       446 l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      |.|.++..+|+|.|+|.|.|..+.
T Consensus       146 L~i~~v~~~D~G~Y~C~a~n~~~~  169 (184)
T 2gi7_A          146 FPIITVTAAHSGTYRCYSFSSRDP  169 (184)
T ss_dssp             SSEEEETTCCSEEEEEEEECTTST
T ss_pred             EEEccCCccCCeEEEEEEEeCCCC
Confidence            899999999999999999998653

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.82  E-value=1.6e-18  Score=146.03  Aligned_cols=73  Identities=23%  Similarity=0.280  Sum_probs=61.6

Q ss_pred             CceeeeecCCeEEEEEEeccCC-CceEEEEE-CCEEeec-CCceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ-PMEVSLTK-NGRVVQS-DDRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~-~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      |.++.+.+|+++.|.|.+.+.+ .+.+.|+| +|..+.. ..++.+.. ......|.|.+++.+|+|.|+|.+.|..
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (191)
T 1epf_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED   85 (191)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCC
Confidence            6788999999999999999876 88999999 8888863 35555433 3566899999999999999999998876

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.82  E-value=3.5e-18  Score=154.38  Aligned_cols=129  Identities=15%  Similarity=0.106  Sum_probs=97.8

Q ss_pred             CeeEEEEeccCCCcceeEEEEEEcCCCccce-EEEEE-ecCCCCCCCCCeeeeecCCeeEEEeecc-ccCCCcceeeEEE
Q psy12425        442 RHAILTIRDASNVDTAPYRVVAENDLGMDSA-IVKIQ-ISDRPDPPQFPTVEDIGHDSLALVWRAP-IWDGGSNITNYIV  518 (591)
Q Consensus       442 ~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~-~~~~~-v~~~p~~p~~~~~~~~~~~~v~l~W~~p-~~~~~~~~~~y~v  518 (591)
                      ....+.+.+|.+...|.|++.|.|..|.+.. ..... ....|..|..+.+...+.+++.|+|+++ ..+.++.+.+|+|
T Consensus       155 ~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~~~~~~~t~~~~P~~~p~~~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v  234 (290)
T 3l5i_A          155 VHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTI  234 (290)
T ss_dssp             CSEEECCSCCCTTCEEEEEEEEEETTEECCCEEEEEESSCCCCSSCCCEEEEEECSSCEEEEECCCCHHHHSSCCCEEEE
T ss_pred             CcceEEecCcCCccEEEEEEEEEeCCcccccEEEEeEccccCCCCCCeeeEeeccCCEEEEEEcCCChhccCCEEEEEEE
Confidence            4556777899999999999999999987653 22222 2234555557778888999999999943 2234458999999


Q ss_pred             EeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcce
Q psy12425        519 EKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDL  571 (591)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~  571 (591)
                      +++...+...........+.++|.+|.+++.|.|+|+|.|.+| |..|....+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~~~~  286 (290)
T 3l5i_A          235 FYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFTF  286 (290)
T ss_dssp             EEEETTSCCEEEEEETTCSEEEECSCCTTCEEEEEEEEEETTE-EEECCCEEE
T ss_pred             EEEeCCCCeEEEEeCCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCceEe
Confidence            9998765433333456677999999999999999999999999 777776544

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.82  E-value=3e-17  Score=160.01  Aligned_cols=224  Identities=14%  Similarity=0.146  Sum_probs=135.6

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCC----------CCCCCCCcceEEEcCCCccCCCeEEee-ccccceeccccEEEEE
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAG----------LSLPSSASNSVQIKDPMAAKAPEIIVP-LRNANAIQNHNAQFQC  314 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g----------~~~~s~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~g~~~~l~c  314 (591)
                      ...|.|.+++..|.|.|.|.+.+..+          ..........+.+.... ..+|.+... +.......++.+.|.|
T Consensus        79 ~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~-~~~P~i~~~~~~~~~~~~~~~v~L~C  157 (512)
T 1zvo_C           79 QFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAP-TKAPDVFPIISGCRHPKDNSPVVLAC  157 (512)
T ss_pred             EEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccC-CcCCeEEeccCCcccccCCCeEEEEE
Confidence            36899999999999999999988642          00001122344444211 234555421 1111123468999999


Q ss_pred             EEcCC-CCC-eeEEecCCccCCCCCceEEEE-eCC---eEEEEEcceecccceEEEEEEEeCCcceeeee----------
Q psy12425        315 TITGC-PKP-TISWLKGSREITPSARHHIFA-EGD---TYTLIINSVYGVDADEYVCRAVNKGGVKSTKA----------  378 (591)
Q Consensus       315 ~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~----------  378 (591)
                      .+.+. |.+ .|.|++++............. ++.   ...|.|.....+ .|.|+|.|.|..+......          
T Consensus       158 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~  236 (512)
T 1zvo_C          158 LITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQ  236 (512)
T ss_pred             EEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcC
Confidence            99886 665 899999654321000000111 121   125788777777 8999999999988764443          


Q ss_pred             -EEEEecCCcc----------------------------------------------cCCCCc----ccceeecCCCeEE
Q psy12425        379 -ELIIMTAPKF----------------------------------------------NVPPRF----RDTAYFDKGENVV  407 (591)
Q Consensus       379 -~l~v~~~p~~----------------------------------------------~~~~~~----~~~~~~~~g~~~~  407 (591)
                       .+.+..+|.+                                              ..+|..    .....+..|+.+.
T Consensus       237 ~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~  316 (512)
T 1zvo_C          237 ASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKAT  316 (512)
T ss_pred             CEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceE
Confidence             2344333320                                              001110    0111245799999


Q ss_pred             EEEeeeccCC--CeEEEeeCCeEeeeccce-EEEe-cC----CeeEEEEeccCCCcceeEEEEEEcCCCccc
Q psy12425        408 VKIPFTGYPK--PKITWYRDNEVIESGGHF-HVET-SE----RHAILTIRDASNVDTAPYRVVAENDLGMDS  471 (591)
Q Consensus       408 l~c~~~~~p~--~~v~W~~~~~~~~~~~~~-~~~~-~~----~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~  471 (591)
                      |.|.+.|..+  ..|.|+++|..+...... .... .+    ..+.|.|.....+|.|.|+|.|.|..+...
T Consensus       317 L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~  388 (512)
T 1zvo_C          317 FTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ  388 (512)
T ss_pred             EEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC
Confidence            9999998644  389999999876421110 1111 11    135688999999999999999999987654

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.82  E-value=3e-19  Score=153.33  Aligned_cols=171  Identities=14%  Similarity=0.219  Sum_probs=124.8

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecC--CccC------------CCCCceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKG--SREI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      .+.+.+|+.+.|.|.+.+.|.+.+.|++.  +...            ....++.+...+...+|.|.+++.+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            55688999999999999999999999982  2111            123466666677788999999999999999999


Q ss_pred             EEeCCc---ceeeeeEEEEe----cCCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCCeEeeeccceE-
Q psy12425        367 AVNKGG---VKSTKAELIIM----TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDNEVIESGGHFH-  436 (591)
Q Consensus       367 a~n~~g---~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~~-  436 (591)
                      |.|..|   .......|.|.    .+|.+...+.   ...+..|+.+.|.|.+.+. |+ +.+.|+++|..+..+.... 
T Consensus        89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~---~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~  165 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPP---SSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQ  165 (213)
T ss_dssp             EEETTTTEEEEBCCEEEEEECSCCBCCEEEEECC---CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC
T ss_pred             eccCCcceeEEcCceEEEEeCCCCCCCeEEccCC---CcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCC
Confidence            999988   34566788887    4444433221   1223479999999999986 33 4999999999885421110 


Q ss_pred             -EEecC---CeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425        437 -VETSE---RHAILTIRDASNVDTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       437 -~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  474 (591)
                       ....+   ....|.|..+..+|.|.|+|.|.|..+.....+
T Consensus       166 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          166 PSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             CEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             cCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence             11111   135689999999999999999999986654443

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.82  E-value=2.5e-18  Score=145.58  Aligned_cols=192  Identities=40%  Similarity=0.668  Sum_probs=154.3

Q ss_pred             CCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEE
Q psy12425        188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ  267 (591)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~  267 (591)
                      .+|.+|..+.+.....+++.|+|.++...++..+.+|.++++..+...|...... .....+.+.+|.++..|.|+|+|.
T Consensus         4 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~L~p~t~Y~~~V~a~   82 (197)
T 3lpw_A            4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN-CHKTSWKVDQLQEGCSYYFRVLAE   82 (197)
T ss_dssp             CSCCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEEE-ECSSEEEECCCCTTCEEEEEEEEE
T ss_pred             CCCCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeecC-CCccEEEEcCCCCCCEEEEEEEEE
Confidence            4778888888888899999999999866666679999999998887788776543 366889999999999999999999


Q ss_pred             cCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCe
Q psy12425        268 NEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT  347 (591)
Q Consensus       268 n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  347 (591)
                      |..|.+..+......                                                                 
T Consensus        83 ~~~g~~~~s~~~~~~-----------------------------------------------------------------   97 (197)
T 3lpw_A           83 NEYGIGLPAETAESV-----------------------------------------------------------------   97 (197)
T ss_dssp             ETTEECCCEECSSCE-----------------------------------------------------------------
T ss_pred             cCccccCCCCCccce-----------------------------------------------------------------
Confidence            977654311000000                                                                 


Q ss_pred             EEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCe
Q psy12425        348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE  427 (591)
Q Consensus       348 ~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~  427 (591)
                                                                                                      
T Consensus        98 --------------------------------------------------------------------------------   97 (197)
T 3lpw_A           98 --------------------------------------------------------------------------------   97 (197)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeecccc
Q psy12425        428 VIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIW  507 (591)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~  507 (591)
                                                                       ....+|.+|.++.+...+.+++.|+|.+|..
T Consensus        98 -------------------------------------------------t~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~  128 (197)
T 3lpw_A           98 -------------------------------------------------KASERPLPPGKITLMDVTRNSVSLSWEKPEH  128 (197)
T ss_dssp             -------------------------------------------------ESCCCCCCCSCEEEEEECSSCEEEEECCCSC
T ss_pred             -------------------------------------------------ecCCCCCCCcccEEEeccCCeEEEEecCCCc
Confidence                                                             0002366777788877888999999999877


Q ss_pred             CCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEe
Q psy12425        508 DGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT  574 (591)
Q Consensus       508 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t  574 (591)
                      +++..+.+|.|+++..+...|........+.+.+.+|.+++.|.|+|+|.|..|.|++|..+..++.
T Consensus       129 ~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~~v~~  195 (197)
T 3lpw_A          129 DGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIA  195 (197)
T ss_dssp             CTTSCCCEEEEEEEETTCSCCEEEEEESSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSSCEEC
T ss_pred             CCCCcccEEEEEEEeCCCCceEEeecccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCcccEec
Confidence            7777899999999988888888877777889999999999999999999999999999988766554

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.82  E-value=4.7e-20  Score=151.80  Aligned_cols=155  Identities=17%  Similarity=0.218  Sum_probs=115.9

Q ss_pred             cceeccccEEEEEEEcC--CCCCeeEEecCCccC----------CCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        302 ANAIQNHNAQFQCTITG--CPKPTISWLKGSREI----------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~--~p~~~v~W~~~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      +.+.+|+.+.|.|....  .+.+.|.|++++..+          ....++.+..++   +|.|.+++.+|+|.|+|.|.|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g---sL~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC---cEEEcccccccCEEEEEEEEe
Confidence            45788999999995433  556789999988533          123455554344   499999999999999999999


Q ss_pred             CCcce--eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEE
Q psy12425        370 KGGVK--STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILT  447 (591)
Q Consensus       370 ~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~  447 (591)
                      ..|..  ...+.|.|..++.   .|.     ....+..+.|.|.+.|.|.|.+.|+++|..+.....           +.
T Consensus        83 ~~g~~~~~~~~~l~V~~~~~---~p~-----i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-----------~~  143 (176)
T 1hng_A           83 TNGTRILNKALDLRILEMVS---KPM-----IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KT  143 (176)
T ss_dssp             TTCCEEEEEEEEEEEECCCC---CCE-----EEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----------SE
T ss_pred             CCCCEEEEEEEEEEEeCCCC---CCE-----EEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----------EE
Confidence            99886  5567777776432   111     112344589999999999999999999988764433           34


Q ss_pred             EeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        448 IRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       448 i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      |..+..+|.|.|+|.|.|..|..+....|.+
T Consensus       144 i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          144 MSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             EEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             EEEEEccCCeEEEEEEEecCCCceecccccC
Confidence            4467799999999999999998877665543

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.82  E-value=1.7e-18  Score=144.44  Aligned_cols=73  Identities=23%  Similarity=0.408  Sum_probs=63.0

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCC--eEEEEEcccCCCCceEEEEEEEcCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      |.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+....+..+...+.  ...|.|.+++.+|+|.|+|.+.|..
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   83 (182)
T 1rhf_A            9 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGG   83 (182)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCT
T ss_pred             CcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCC
Confidence            678899999999999999999999999999999998776666555443  3689999999999999999997753

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.82  E-value=3e-19  Score=153.30  Aligned_cols=176  Identities=18%  Similarity=0.230  Sum_probs=126.1

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecCCc--cC------------CCCCceEEEEeCCeEEEEEcceecccceE
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--EI------------TPSARHHIFAEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  362 (591)
                      ..+..+.+.+|+.+.|.|.+.+.|.+.+.|+++..  .+            ....++.+...+...+|.|.+++.+|+|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   85 (213)
T 3d9a_L            6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM   85 (213)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEE
Confidence            33456778999999999999999999999987432  11            11246666667777899999999999999


Q ss_pred             EEEEEEeCCccee-eeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeec-cCCC-eEEEeeCCeEeeeccceE
Q psy12425        363 YVCRAVNKGGVKS-TKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKP-KITWYRDNEVIESGGHFH  436 (591)
Q Consensus       363 y~c~a~n~~g~~~-~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~-~v~W~~~~~~~~~~~~~~  436 (591)
                      |+|.|.|..+... ....+.|..   +|.+...+.   ......|+.+.|.|.+.| .|.+ .+.|+++|..+.......
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~---~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  162 (213)
T 3d9a_L           86 YFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS  162 (213)
T ss_dssp             EEEEECSSSSCEECCCEEEEECCCCBCCEEEEECC---CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEE
T ss_pred             EEEeeecCCcceeCCCEEEEEecCCCCceeEeECC---ChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeec
Confidence            9999999877543 334677765   444332111   112236889999999987 5665 899999999876541111


Q ss_pred             --EEecCC-----eeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        437 --VETSER-----HAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       437 --~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                        .....+     ...|.|.++..+|.|.|+|.|.|..........
T Consensus       163 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3d9a_L          163 WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKS  208 (213)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEE
T ss_pred             CCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEE
Confidence              111111     358999999999999999999998766543333

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=4.4e-19  Score=148.33  Aligned_cols=176  Identities=12%  Similarity=0.087  Sum_probs=125.5

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+.. .+.+|+.++|.|.+.+. .+.+.|++++..+..... ..........|.|.+++..|+|.|+|.+.|.
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   79 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEecCC
Confidence            46777776665 68999999999998764 468999998876431000 0001223458999999999999999999987


Q ss_pred             Ccce--eeeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeE
Q psy12425        371 GGVK--STKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI  445 (591)
Q Consensus       371 ~g~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  445 (591)
                      .|..  +..+.|.|..   +|.+...+    ...+.+|+.+.|.|.+.+ +.+.+.|+++|..+..    ..........
T Consensus        80 ~~~~~~s~~~~l~V~~~~~~p~i~~~p----~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~~~~~~~~~~  150 (188)
T 1oll_A           80 ELWSEPSNLLDLVVTEMYDTPTLSVHP----GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRGYGKVQAE  150 (188)
T ss_dssp             TEECCCCCCEEEEEESCSCCCEEEEES----CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE----EEEECSSEEE
T ss_pred             CCCCCCCCceEEEecccCCCCeEEECC----CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc----cccCCCceeE
Confidence            6543  4456777764   34443222    234688999999999876 4579999999876654    1223456789


Q ss_pred             EEEeccCCCcceeEEEEEEcCCC---ccceEEEEEe
Q psy12425        446 LTIRDASNVDTAPYRVVAENDLG---MDSAIVKIQI  478 (591)
Q Consensus       446 l~i~~~~~~~~g~y~c~a~n~~g---~~~~~~~~~v  478 (591)
                      |.|.+++.+|+|.|+|.|.|...   ..+..+.|.|
T Consensus       151 L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V  186 (188)
T 1oll_A          151 FPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV  186 (188)
T ss_dssp             EEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred             EEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence            99999999999999999998752   2244555554

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.81  E-value=6.2e-19  Score=148.67  Aligned_cols=80  Identities=33%  Similarity=0.563  Sum_probs=66.1

Q ss_pred             eeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeeeEEEE
Q psy12425        304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAELII  382 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~l~v  382 (591)
                      +..|+.+.|.|.+.+.|.+.+.|++++..+....++.+..++   +|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       112 ~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  188 (192)
T 2iep_A          112 IIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV  188 (192)
T ss_dssp             EETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTS---CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCC---cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            456777889999999999999999999988877766665444   69999999999999999999999988 45688888


Q ss_pred             ecCC
Q psy12425        383 MTAP  386 (591)
Q Consensus       383 ~~~p  386 (591)
                      ..+|
T Consensus       189 ~~pp  192 (192)
T 2iep_A          189 EVFA  192 (192)
T ss_dssp             EC--
T ss_pred             EeCC
Confidence            7654

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.81  E-value=1.7e-18  Score=152.95  Aligned_cols=185  Identities=17%  Similarity=0.196  Sum_probs=128.6

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--ccCC----------------CCCceEEEEe--CCeEEEEEcceec
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REIT----------------PSARHHIFAE--GDTYTLIINSVYG  357 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~~----------------~~~~~~~~~~--~~~~~l~i~~~~~  357 (591)
                      ....+.+|+.+.|.|.+.+.|  .+.+.|+++.  ..+.                ...++.+..+  +...+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            345688999999999999875  6899999852  2110                1245665543  4567999999999


Q ss_pred             ccceEEEEEEEeCCc-------ce--eeeeEEEEecCCcc---------cCCCCc---ccceeecCCCeEEEEEeeeccC
Q psy12425        358 VDADEYVCRAVNKGG-------VK--STKAELIIMTAPKF---------NVPPRF---RDTAYFDKGENVVVKIPFTGYP  416 (591)
Q Consensus       358 ~d~g~y~c~a~n~~g-------~~--~~~~~l~v~~~p~~---------~~~~~~---~~~~~~~~g~~~~l~c~~~~~p  416 (591)
                      +|+|.|+|.|.|..|       ..  .....|.|...|..         ..++.+   .....+.+|+.+.|.|.+.+.|
T Consensus        88 ~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~  167 (257)
T 1f3r_B           88 DDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNI  167 (257)
T ss_dssp             TCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCC
T ss_pred             ccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcC
Confidence            999999999999864       11  23457777765410         000011   1234578899999999999999


Q ss_pred             CCeEEEee--CCeEee------------eccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        417 KPKITWYR--DNEVIE------------SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       417 ~~~v~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      .+.+.|++  ++..+.            ...++.+........|+|.++..+|+|.|.|.|.|....-.....|.|...+
T Consensus       168 ~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~~  247 (257)
T 1f3r_B          168 NNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAAE  247 (257)
T ss_dssp             BTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSSC
T ss_pred             CCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeCCC
Confidence            89999999  554331            0234555444567789999999999999999999975222334456665544


Q ss_pred             CC
Q psy12425        483 DP  484 (591)
Q Consensus       483 ~~  484 (591)
                      ..
T Consensus       248 ~~  249 (257)
T 1f3r_B          248 QK  249 (257)
T ss_dssp             CC
T ss_pred             cC
Confidence            33

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.81  E-value=1.7e-19  Score=159.33  Aligned_cols=171  Identities=18%  Similarity=0.208  Sum_probs=120.5

Q ss_pred             ccccceeccccEEEEEEEcC---CCCCeeEEecCCccCC------------------------------CCCceEEEEeC
Q psy12425        299 LRNANAIQNHNAQFQCTITG---CPKPTISWLKGSREIT------------------------------PSARHHIFAEG  345 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~---~p~~~v~W~~~~~~~~------------------------------~~~~~~~~~~~  345 (591)
                      +..+.+.+|+.+.|.|.+.+   .|.+.+.|++++....                              ...+..+.. .
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~   87 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-L   87 (250)
T ss_dssp             CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC-T
T ss_pred             CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc-C
Confidence            34567889999999999987   8889999999764420                              011111111 1


Q ss_pred             CeEEEEEcceecccceEEEEEEEeCCcce-----eeeeEEEEecCCcccCC-CCcccceeecCCCeEEEEEeeeccCCCe
Q psy12425        346 DTYTLIINSVYGVDADEYVCRAVNKGGVK-----STKAELIIMTAPKFNVP-PRFRDTAYFDKGENVVVKIPFTGYPKPK  419 (591)
Q Consensus       346 ~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-----~~~~~l~v~~~p~~~~~-~~~~~~~~~~~g~~~~l~c~~~~~p~~~  419 (591)
                      +..+|.|.+++.+|+|.|+|.|.|..+..     ...+.|.|..++..... ........+.+|+.+.|.|.+.+.|.|.
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~  167 (250)
T 2fbo_J           88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN  167 (250)
T ss_dssp             TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCE
T ss_pred             CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCe
Confidence            23479999999999999999999987754     34677888765221111 0112335567899999999999999999


Q ss_pred             EEEeeCCeEeeeccce--EEE-------------------ecCCeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        420 ITWYRDNEVIESGGHF--HVE-------------------TSERHAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       420 v~W~~~~~~~~~~~~~--~~~-------------------~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      +.|++++..+......  ...                   .......|.|.++..+|+|.|+|.|.|..|..
T Consensus       168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          168 VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL  239 (250)
T ss_dssp             EEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred             eEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcccc
Confidence            9999998876432211  000                   00123689999999999999999999966644

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.81  E-value=2.1e-19  Score=165.02  Aligned_cols=213  Identities=10%  Similarity=0.164  Sum_probs=134.8

Q ss_pred             eeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCC-eEEeeccccceeccccEEEEEEEcCC-CCC---
Q psy12425        248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAP-EIIVPLRNANAIQNHNAQFQCTITGC-PKP---  322 (591)
Q Consensus       248 ~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~---  322 (591)
                      .|.|......|.|.|+|.|.|..+...     ..+..........| .+...+....+.+|+.+.|.|.+.+. |.+   
T Consensus        73 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~-----~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~  147 (323)
T 2wqr_A           73 ELTLSQKHWLSDRTYTCQVTYQGHTFE-----DSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTV  147 (323)
T ss_dssp             EEEEEHHHHHTTCCEEEEEEETTEEEE-----EEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCC
T ss_pred             EEEEcHHHcCCCCcEEEEEEeCCCCcc-----eeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCce
Confidence            466777777789999999999765321     11111001112233 33445555567889999999999885 555   


Q ss_pred             eeEEecCC-ccCCCCCceEEEE-eC---CeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE----ecCCcccCCCC
Q psy12425        323 TISWLKGS-REITPSARHHIFA-EG---DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII----MTAPKFNVPPR  393 (591)
Q Consensus       323 ~v~W~~~~-~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v----~~~p~~~~~~~  393 (591)
                      .|.|++++ ..+.......... ++   ....|.|.++..+|.|.|+|.|.|..+.......+.+    ..+|.+...+.
T Consensus       148 ~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~  227 (323)
T 2wqr_A          148 QLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFAT  227 (323)
T ss_dssp             EEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEEC
T ss_pred             EEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCC
Confidence            89999965 4333221111111 11   1237999999999999999999998643322222221    13444332111


Q ss_pred             cccceeecCCCeEEEEEeeecc-CCC-eEEEeeCCeEeeeccceEE----EecC----CeeEEEEeccCCCcceeEEEEE
Q psy12425        394 FRDTAYFDKGENVVVKIPFTGY-PKP-KITWYRDNEVIESGGHFHV----ETSE----RHAILTIRDASNVDTAPYRVVA  463 (591)
Q Consensus       394 ~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~~~~~~~~~~~~~----~~~~----~~~~l~i~~~~~~~~g~y~c~a  463 (591)
                      .   .....|+.+.|.|.+.|. |.+ .|.|+++|..+.... +..    ...+    ..+.|.|..+..+|.|.|+|.|
T Consensus       228 ~---~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a  303 (323)
T 2wqr_A          228 P---EWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRA  303 (323)
T ss_dssp             C---CCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEE
T ss_pred             C---hHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEE
Confidence            1   111239999999999984 443 899999999876432 211    1111    1357899999999999999999


Q ss_pred             EcCCCc
Q psy12425        464 ENDLGM  469 (591)
Q Consensus       464 ~n~~g~  469 (591)
                      .|..+.
T Consensus       304 ~n~~~~  309 (323)
T 2wqr_A          304 VHEAAS  309 (323)
T ss_dssp             ECTTST
T ss_pred             EeCCCC
Confidence            999876

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.81  E-value=3.8e-18  Score=150.07  Aligned_cols=180  Identities=14%  Similarity=0.219  Sum_probs=126.5

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCCc--cC-----------------CCCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGSR--EI-----------------TPSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~~--~~-----------------~~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ....+.+|+.+.|.|.+.+.|  .+.+.|+++..  ..                 ....++.+..+  +...+|.|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            446788999999999999987  67899988421  10                 12246666553  456789999999


Q ss_pred             cccceEEEEEEEeCCcce--eeeeEEEEecCCc---------ccCCCCc---ccceeecCCCeEEEEEeeeccCCCeEEE
Q psy12425        357 GVDADEYVCRAVNKGGVK--STKAELIIMTAPK---------FNVPPRF---RDTAYFDKGENVVVKIPFTGYPKPKITW  422 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~~--~~~~~l~v~~~p~---------~~~~~~~---~~~~~~~~g~~~~l~c~~~~~p~~~v~W  422 (591)
                      .+|+|.|+|.|.|..+..  .....|.|..++.         ...++.+   .....+.+|+.+.|.|.+.+.|.+.+.|
T Consensus        90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W  169 (247)
T 2ghw_B           90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAW  169 (247)
T ss_dssp             GGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEE
T ss_pred             HHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEE
Confidence            999999999999984332  3345777765431         0011111   1234578999999999999999999999


Q ss_pred             ee--CCeEee------------eccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEEEec
Q psy12425        423 YR--DNEVIE------------SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQIS  479 (591)
Q Consensus       423 ~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v~  479 (591)
                      ++  ++..+.            ...++.+........|+|.++..+|+|.|.|.|.|..+.. .....|.|.
T Consensus       170 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          170 YQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            99  554331            1234555545567789999999999999999999864332 344455554

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.81  E-value=9.2e-19  Score=151.20  Aligned_cols=177  Identities=13%  Similarity=0.202  Sum_probs=125.8

Q ss_pred             cccceeccccEEEEEEEcCCCCCe---eEEecCCccCCCCCc------------------eEEE---EeCCeEEEEEcce
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPT---ISWLKGSREITPSAR------------------HHIF---AEGDTYTLIINSV  355 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~---v~W~~~~~~~~~~~~------------------~~~~---~~~~~~~l~i~~~  355 (591)
                      ..+.+..|+.+.|.|.+.+.|.+.   |.|++++..+.....                  +.+.   ......+|.|.++
T Consensus         7 ~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   86 (218)
T 4frw_A            7 DVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNA   86 (218)
T ss_dssp             SEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSC
T ss_pred             CeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeec
Confidence            456688999999999999988764   899997765432111                  1110   0112346999999


Q ss_pred             ecccceEEEEEEEeCCcceeee-eEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccc
Q psy12425        356 YGVDADEYVCRAVNKGGVKSTK-AELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH  434 (591)
Q Consensus       356 ~~~d~g~y~c~a~n~~g~~~~~-~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~  434 (591)
                      +.+|+|.|.|.+.+..+..... ..+.+..++......  .....+..+..+.+.|.+.+.|.|.|.|++++..+.....
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~  164 (218)
T 4frw_A           87 VQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNP--GPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRS  164 (218)
T ss_dssp             CGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEE--CSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEE
T ss_pred             cHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeee--eeeeeeeeccccceeeeccCCcCceEEEEECCcccccCce
Confidence            9999999999999876655433 444444433322211  2334567899999999999999999999999987765443


Q ss_pred             eEEEec-CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        435 FHVETS-ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       435 ~~~~~~-~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      +..... ...+.|.|..+..+|.|.|+|.|.|..|..+..+.+.+
T Consensus       165 ~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          165 FKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             EECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             EecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            322111 12467999999999999999999999999877766655

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.80  E-value=1.3e-18  Score=150.60  Aligned_cols=179  Identities=13%  Similarity=0.143  Sum_probs=124.6

Q ss_pred             cccceeccccEEEEEEEcCCCC-----CeeEEecCCccC---------CC------CCceEEEE---eCCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCPK-----PTISWLKGSREI---------TP------SARHHIFA---EGDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~-----~~v~W~~~~~~~---------~~------~~~~~~~~---~~~~~~l~i~~~~  356 (591)
                      ..+.+..|+.+.|.|.+.+.|.     +.+.|++++..+         ..      ..+..+..   ..+..+|.|.+++
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   88 (222)
T 3sbw_C            9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVK   88 (222)
T ss_dssp             SEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCC
T ss_pred             ccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcc
Confidence            3456789999999999987764     489999864211         00      12333321   1235689999999


Q ss_pred             cccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeC-CeEeeeccce
Q psy12425        357 GVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD-NEVIESGGHF  435 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~-~~~~~~~~~~  435 (591)
                      .+|+|.|+|.|.| .|.....+.|.|..++....   ......+..|+.+.|.|.+.|.|.|.+.|+++ +..+......
T Consensus        89 ~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~---~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~  164 (222)
T 3sbw_C           89 LQDAGVYRCMISY-GGADYKRITVKVNAPYNKIN---QRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTT  164 (222)
T ss_dssp             GGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCE---EEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEE
T ss_pred             cccCeEEEEEEEe-CCCceeEEEEEEECCCCCCC---ceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccce
Confidence            9999999999999 66667778888886654321   11112467899999999999999999999998 5555433222


Q ss_pred             EEEec--CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        436 HVETS--ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       436 ~~~~~--~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      .....  +......+..+...|.|.|+|.|.|..|.....+.+.+...|
T Consensus       165 ~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p  213 (222)
T 3sbw_C          165 TNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELP  213 (222)
T ss_dssp             EECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC-
T ss_pred             EEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCc
Confidence            22221  111222233456789999999999999999999999987655

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.80  E-value=1.3e-18  Score=148.78  Aligned_cols=170  Identities=15%  Similarity=0.230  Sum_probs=121.6

Q ss_pred             ccccceeccccEEEEEEEcCCCCCeeEEecCC--ccC------------CCCCceEEEEeCCeEEEEEcceecccceEEE
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGS--REI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      +....+.+|+.+.|.|.+.+.|.+.+.|+++.  ..+            ....++.+...+...+|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            45667899999999999999988999998842  221            1134666666677789999999999999999


Q ss_pred             EEEEeCCccee-eeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEeeCCeEeeeccce--E
Q psy12425        365 CRAVNKGGVKS-TKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWYRDNEVIESGGHF--H  436 (591)
Q Consensus       365 c~a~n~~g~~~-~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~~~~~~~~~~~--~  436 (591)
                      |.|.|..+... ....|.|..   +|.+...+.   ...+..|+.+.|.|.+.|. |.+ .+.|+++|..+......  .
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~---~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  163 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPP---STEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVT  163 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECC---CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEEC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECC---chhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccC
Confidence            99999876542 234666754   343332111   1113478999999999874 544 89999999987644111  1


Q ss_pred             EEecCC-----eeEEEEeccCCCcceeEEEEEEcCCCccc
Q psy12425        437 VETSER-----HAILTIRDASNVDTAPYRVVAENDLGMDS  471 (591)
Q Consensus       437 ~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~~~  471 (591)
                      .....+     ...|.|..+..+|.|.|+|.|.|......
T Consensus       164 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  203 (210)
T 1lk3_L          164 DQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSP  203 (210)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred             CccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCe
Confidence            111111     24799999999999999999999876543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=2.6e-18  Score=148.82  Aligned_cols=184  Identities=11%  Similarity=0.084  Sum_probs=129.9

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+.. .+.+|+.++|.|.+.+ +...+.|+|++..+..... ..........|.|.+++.+|+|.|+|.+.|.
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            56777777665 7899999999999875 3568999998865431000 0001123457999999999999999999887


Q ss_pred             Ccce--eeeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeE
Q psy12425        371 GGVK--STKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI  445 (591)
Q Consensus       371 ~g~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  445 (591)
                      .+..  +....|.|..   +|.+...+    ...+.+|+.++|.|.+.+. .+.+.|+++|..+..    ..........
T Consensus        83 ~~~s~~S~~~~L~V~~~~~~P~i~~~p----~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~~~~~~~~~  153 (242)
T 1p6f_A           83 ELWSEPSNLLDLVVTEMYDTPTLSVHP----GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRGYGKVQAE  153 (242)
T ss_dssp             TEECCCCCCEEEEEECCSCCCEEEEES----CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EEEECSSEEE
T ss_pred             CccccCCcceEEEeecccCCCceEccC----CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----cccCCCceEE
Confidence            5543  4456777764   34433222    2356899999999998765 469999999976643    1223456789


Q ss_pred             EEEeccCCCcceeEEEEEEcCC---CccceEEEEEecCCCCCCC
Q psy12425        446 LTIRDASNVDTAPYRVVAENDL---GMDSAIVKIQISDRPDPPQ  486 (591)
Q Consensus       446 l~i~~~~~~~~g~y~c~a~n~~---g~~~~~~~~~v~~~p~~p~  486 (591)
                      |.|.+++..|+|.|+|.|.|..   ...+..+.|.|..++..|.
T Consensus       154 l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P~  197 (242)
T 1p6f_A          154 FPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTS  197 (242)
T ss_dssp             EEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC------
T ss_pred             EEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCCCCc
Confidence            9999999999999999999874   2346788888887766554

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.79  E-value=4.1e-18  Score=150.05  Aligned_cols=178  Identities=13%  Similarity=0.200  Sum_probs=127.9

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--ccC-----------------CCCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REI-----------------TPSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ....+.+|+.+.|.|.+.+.|  .+.+.|+++.  ..+                 ....++.+..+  +...+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (256)
T 1nqb_A            8 GAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLT   87 (256)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCC
Confidence            456688999999999999875  6799999842  211                 01245555543  456799999999


Q ss_pred             cccceEEEEEEEeCCcc-----eeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC-----eEEEee--
Q psy12425        357 GVDADEYVCRAVNKGGV-----KSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP-----KITWYR--  424 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~-----~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-----~v~W~~--  424 (591)
                      .+|+|.|+|.|.|..|.     ......|.|..+|.+...|   ....+..|+.+.|.|.+.+.|.+     .+.|++  
T Consensus        88 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p---~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~  164 (256)
T 1nqb_A           88 SEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTP---LSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQK  164 (256)
T ss_dssp             GGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEEC---SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             hhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecC---cEEEEecCCcEEEEeEecCcccccccceEEEEEEEC
Confidence            99999999999998663     1234567777665544333   33457899999999999998875     999999  


Q ss_pred             CCeEee------------eccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEEEecC
Q psy12425        425 DNEVIE------------SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISD  480 (591)
Q Consensus       425 ~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~  480 (591)
                      ++..+.            ...++.+........|+|.++..+|+|.|.|.|.|..+.. .....|.|..
T Consensus       165 ~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          165 PGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             TTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             CCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence            555331            1234555445567889999999999999999999864322 3344566643

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.79  E-value=6.5e-19  Score=130.23  Aligned_cols=88  Identities=19%  Similarity=0.352  Sum_probs=81.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.|.|.|.|.|+|||+.|..+.++++...+...+|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus        20 p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   99 (107)
T 3knb_B           20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAA   99 (107)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEE
Confidence            67899999999999999999999999999999999999898888888888999999999999999999999999999999


Q ss_pred             EEEEecCC
Q psy12425         82 TINITGLP   89 (591)
Q Consensus        82 ~l~v~~~p   89 (591)
                      .|.|..+|
T Consensus       100 ~l~V~~pP  107 (107)
T 3knb_B          100 AVTVLEPP  107 (107)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEcCC
Confidence            99998765

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.79  E-value=2.2e-18  Score=150.16  Aligned_cols=84  Identities=19%  Similarity=0.396  Sum_probs=67.8

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCcee-EEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFK-FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      ..+.|.+|+++.|.|.+.|.|.+.+.|+|+|..+....++. ........+|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~  106 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY  106 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccE
Confidence            57789999999999999999999999999999987664432 12333445899999999999999999999877766555


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .|.|.
T Consensus       107 ~l~V~  111 (231)
T 3ojm_B          107 HLDVV  111 (231)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55553

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.79  E-value=5.1e-19  Score=154.16  Aligned_cols=176  Identities=20%  Similarity=0.333  Sum_probs=124.7

Q ss_pred             cccceeccccEEEEEEEcCCCC-CeeEEecCCccCC---------C----CCceE----------EEEeCCeEEEEEcce
Q psy12425        300 RNANAIQNHNAQFQCTITGCPK-PTISWLKGSREIT---------P----SARHH----------IFAEGDTYTLIINSV  355 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~-~~v~W~~~~~~~~---------~----~~~~~----------~~~~~~~~~l~i~~~  355 (591)
                      ....+.+|+.+.|.|.+.+.+. +.+.|++++....         .    ..+..          +..++   .|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~---~L~i~~v   84 (231)
T 2pet_A            8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG---RLVLAEA   84 (231)
T ss_dssp             SEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC---CEEESSC
T ss_pred             CcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc---eEEEccc
Confidence            4566889999999999999985 8999998654422         0    01111          22222   4999999


Q ss_pred             ecccceEEEEEEEeCC-cceeeeeEEEEecCCcccCCCCcccceeecCCCeE-EEEEee-eccCCCeEEEeeCCeEeeec
Q psy12425        356 YGVDADEYVCRAVNKG-GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV-VVKIPF-TGYPKPKITWYRDNEVIESG  432 (591)
Q Consensus       356 ~~~d~g~y~c~a~n~~-g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~-~l~c~~-~~~p~~~v~W~~~~~~~~~~  432 (591)
                      +.+|+|.|+|.|.|.. |.....+.|.|..+|..+.-........+..|+.+ .|.|.+ .+.|.|.+.|++++..+...
T Consensus        85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~  164 (231)
T 2pet_A           85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVP  164 (231)
T ss_dssp             CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCC
T ss_pred             CcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccc
Confidence            9999999999999987 77788889999887654221111123345678887 999999 89999999999999988755


Q ss_pred             c----ceEEEec----CC-----eeEEEEeccCCCcceeEEEEEEcC-----CCc-cceEEEEEe
Q psy12425        433 G----HFHVETS----ER-----HAILTIRDASNVDTAPYRVVAEND-----LGM-DSAIVKIQI  478 (591)
Q Consensus       433 ~----~~~~~~~----~~-----~~~l~i~~~~~~~~g~y~c~a~n~-----~g~-~~~~~~~~v  478 (591)
                      .    ++.+...    ..     ...|.|.....+|.|.|+|.|.|.     .|. .+..+.|.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          165 VEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             SSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             cccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            4    3433321    11     266888766666799999999994     444 444444443

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.79  E-value=1.7e-19  Score=150.30  Aligned_cols=146  Identities=12%  Similarity=0.220  Sum_probs=109.5

Q ss_pred             eeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcc-eecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINS-VYGVDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      ...|+.+.|.|.+.+ +. .+.|++++..+....         ..+|.|.+ +..+|+|.|+|.|.|..|.......+.|
T Consensus        11 ~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~---------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v   79 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARV   79 (186)
T ss_dssp             EEETTEEEEECSSCC-CT-TCEEEETTEEECSCC---------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCC
T ss_pred             EeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC---------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEE
Confidence            467999999999988 44 499999998876531         12699999 9999999999999999888555444444


Q ss_pred             ecCCcccC------------CC-----Cc-----ccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEec
Q psy12425        383 MTAPKFNV------------PP-----RF-----RDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS  440 (591)
Q Consensus       383 ~~~p~~~~------------~~-----~~-----~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~  440 (591)
                      ...+....            ++     ..     .....+..|+.+.|.|.+   |.|.+.|+++|..+....       
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~-------  149 (186)
T 1jbj_A           80 GSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLN-------  149 (186)
T ss_dssp             CSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSS-------
T ss_pred             ecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccC-------
Confidence            33211110            00     00     001234589999999998   889999999999875322       


Q ss_pred             CCeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        441 ERHAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       441 ~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      .....|.|.++..+|+|.|+|.|.|..|..
T Consensus       150 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          150 ATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            256789999999999999999999999875

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.79  E-value=2.6e-18  Score=147.53  Aligned_cols=80  Identities=26%  Similarity=0.442  Sum_probs=59.1

Q ss_pred             eeccccEEEEEE-EcCCCCCeeEEecCCc-cCCCCCce-------EEEEeCCeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        304 AIQNHNAQFQCT-ITGCPKPTISWLKGSR-EITPSARH-------HIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       304 ~~~g~~~~l~c~-~~~~p~~~v~W~~~~~-~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      +.+|+.+.|.|. +.+.|.+.+.|++++. .+......       ..........|.|.++..+|.|.|+|.|.|..|..
T Consensus       116 ~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA  195 (212)
T ss_dssp             EETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             cCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCc
Confidence            456778899999 6889999999999998 77654331       22223334479999999999999999999999988


Q ss_pred             --eeeeEEEEe
Q psy12425        375 --STKAELIIM  383 (591)
Q Consensus       375 --~~~~~l~v~  383 (591)
                        +..+.|.|.
T Consensus       196 ~~s~~~~l~V~  206 (212)
T 1f97_A          196 MRSEAAHMDAV  206 (212)
T ss_dssp             EECCCEEEEEE
T ss_pred             cccceEEEEEE
Confidence              444555554

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.79  E-value=1.1e-17  Score=149.26  Aligned_cols=191  Identities=15%  Similarity=0.230  Sum_probs=130.0

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCcc-----C---------CCCCceEEEEeCCeEEEEEcceec
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE-----I---------TPSARHHIFAEGDTYTLIINSVYG  357 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~-----~---------~~~~~~~~~~~~~~~~l~i~~~~~  357 (591)
                      .+.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..     +         ....++.+..++...+|.|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            34555666777889999999999999999999999985421     1         113466666667778999999999


Q ss_pred             ccceEEEEEEEeCCcce-eeeeEEEEecCCc-------------ccCCCCcccceeecCCCeEEEEEeeeccC--CCeEE
Q psy12425        358 VDADEYVCRAVNKGGVK-STKAELIIMTAPK-------------FNVPPRFRDTAYFDKGENVVVKIPFTGYP--KPKIT  421 (591)
Q Consensus       358 ~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~-------------~~~~~~~~~~~~~~~g~~~~l~c~~~~~p--~~~v~  421 (591)
                      +|+|.|.|.|.|..+.. .....|.|..+|.             +...  ......+.+|+.+.|.|.+.+.+  .+.+.
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~--~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~  169 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLV--ESGGGLVQPGGSLRLSCAASGFTISDYWIH  169 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEE--EECCEEECTTCCEEEEEEEESSCGGGSEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEE--CCCceEecCCCeEEEEEEecCccCCCCEEE
Confidence            99999999999976642 3345677665532             1110  01345678999999999999877  58999


Q ss_pred             EeeCC--eEe---e--------------eccceEEEec--CCeeEEEEeccCCCcceeEEEEEEcCC---Ccc--ceEEE
Q psy12425        422 WYRDN--EVI---E--------------SGGHFHVETS--ERHAILTIRDASNVDTAPYRVVAENDL---GMD--SAIVK  475 (591)
Q Consensus       422 W~~~~--~~~---~--------------~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~a~n~~---g~~--~~~~~  475 (591)
                      |++++  ...   .              ...++.+...  .....|.|.++..+|+|.|.|.|.|..   +..  .....
T Consensus       170 W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~  249 (276)
T 3auv_A          170 WVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTL  249 (276)
T ss_dssp             EEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEE
T ss_pred             EEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEE
Confidence            99963  211   0              1234444432  345689999999999999999999984   221  23456


Q ss_pred             EEecCCCCC
Q psy12425        476 IQISDRPDP  484 (591)
Q Consensus       476 ~~v~~~p~~  484 (591)
                      |.|...|.+
T Consensus       250 l~V~~~~~~  258 (276)
T 3auv_A          250 VTVSSASAA  258 (276)
T ss_dssp             EEEC-----
T ss_pred             EEEcccccc
Confidence            666554433

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.78  E-value=5.3e-18  Score=145.48  Aligned_cols=176  Identities=12%  Similarity=0.147  Sum_probs=123.7

Q ss_pred             eEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCc--c------------CCCCCceEEEEeCCeEEEEEcceeccc
Q psy12425        294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--E------------ITPSARHHIFAEGDTYTLIINSVYGVD  359 (591)
Q Consensus       294 ~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d  359 (591)
                      .+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++...  .            .....++.+...+...+|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED   82 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence            34454566778999999999999999999999988321  1            012346666666677899999999999


Q ss_pred             ceEEEEEEEeCCcce-eeeeEEEE---ecCCcccCCCCcccceeecCCCeEEEEEeeeccCC--CeEEEeeCCeEeeecc
Q psy12425        360 ADEYVCRAVNKGGVK-STKAELII---MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK--PKITWYRDNEVIESGG  433 (591)
Q Consensus       360 ~g~y~c~a~n~~g~~-~~~~~l~v---~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~  433 (591)
                      +|.|+|.|.|..+.. .....|.|   ..+|.+...+   ....+..|+.+.|.|.+.+.++  +.+.|+++|..+..+.
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~---~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  159 (213)
T 3r06_A           83 IGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFP---PSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGV  159 (213)
T ss_dssp             CSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEEC---CCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             CEEEEEecccCCceEEcCCceEEEeccCCCceeeeeC---CCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCce
Confidence            999999999876533 34456776   3344443222   1222346888999999998654  3899999999886431


Q ss_pred             --ceEEEecCC-----eeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425        434 --HFHVETSER-----HAILTIRDASNVDTAPYRVVAENDLGMDSA  472 (591)
Q Consensus       434 --~~~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~  472 (591)
                        ........+     ...|.|.....+|.|.|+|.|.|.......
T Consensus       160 ~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~  205 (213)
T 3r06_A          160 LQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAI  205 (213)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE
T ss_pred             EeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcce
Confidence              111111111     346778888888999999999998655433

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.78  E-value=6.7e-18  Score=144.02  Aligned_cols=188  Identities=22%  Similarity=0.343  Sum_probs=142.8

Q ss_pred             EEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEee----cCcceEEEcCCcCCcE
Q psy12425         83 INITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT----CHDTTFIVQGLTEGQE  158 (591)
Q Consensus        83 l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~~~  158 (591)
                      +.....|.+|.. +.+..... ++.|+|.+|...++.++..|.|+++......|......    .....+.+.+|.+++.
T Consensus         3 l~~~~~P~~P~~-~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   80 (209)
T 2vkw_A            3 LAQADTPSSPSI-DQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETT   80 (209)
T ss_dssp             --CCCCCCCCEE-EEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCE
T ss_pred             ccccCCCcCCcc-cEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCe
Confidence            344566777655 45555555 79999999977778789999999999888888776542    2356899999999999


Q ss_pred             EEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEE
Q psy12425        159 YLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQR  238 (591)
Q Consensus       159 y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~  238 (591)
                      |.|+|.|.|..|.+..+......+  .....|.+|..+.+.....+++.|+|.+| .+.+..+.+|.|+++. ....|..
T Consensus        81 Y~~~V~A~n~~G~~~~s~~~~~~T--~~~~~P~~P~~~~~~~~~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~-~~~~~~~  156 (209)
T 2vkw_A           81 YAVRLAALNGKGLGEISAASEFKT--QPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRA-LSSEWKP  156 (209)
T ss_dssp             EEEEEEEEETTEECCCCCCEEEEC--CCSCSCCCCEEEEEECTTSSCEEEEEECC-CCTTSCCCEEEEEEEE-TTSCCCC
T ss_pred             EEEEEEEEcCCcccCCcccccccc--cCCCCCCCCcccccccccCCeEEEEEECc-ccCCCCCceEEEEEEC-CCCCCce
Confidence            999999999999887765433222  12225666666666677889999999998 4445689999999998 5556655


Q ss_pred             EEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC
Q psy12425        239 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS  276 (591)
Q Consensus       239 ~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s  276 (591)
                      ..........+.|.+|.++..|.|+++|.|..|.+.++
T Consensus       157 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S  194 (209)
T 2vkw_A          157 EIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAA  194 (209)
T ss_dssp             CEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             eeecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcc
Confidence            44444455789999999999999999999999987654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.78  E-value=8.8e-18  Score=142.19  Aligned_cols=167  Identities=13%  Similarity=0.087  Sum_probs=117.3

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceE-EEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH-IFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+|.+...+. ..+.+|+.+.|.|.+.+ +.+.+.|+|++..+....... .........|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~   84 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   84 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence            4677766654 66889999999999974 778999999887653211110 01111234799999999999999999987


Q ss_pred             CCc-----ceeeeeEEEEecC---CcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEec-
Q psy12425        370 KGG-----VKSTKAELIIMTA---PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS-  440 (591)
Q Consensus       370 ~~g-----~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-  440 (591)
                      ...     ..+....|.|...   |.+...+.    ..+.+|+.++|.|.+.+ +.+.+.|+++|..+........... 
T Consensus        85 ~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~----~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~  159 (201)
T 1nkr_A           85 THSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG----PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNG  159 (201)
T ss_dssp             TTBTTCCCCCCCCEEEEEECSSCCCEEEEESC----SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETT
T ss_pred             CCCCccccCCCCCEEEEeeccCCCCceecCCC----CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCC
Confidence            532     2244567777653   33332221    35689999999999986 5689999999987654322222222 


Q ss_pred             CCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        441 ERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       441 ~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                      .....|.|.+++  |+|.|+|.|.+.
T Consensus       160 ~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          160 TFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            236789999998  999999999876

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.78  E-value=2.4e-18  Score=157.92  Aligned_cols=264  Identities=11%  Similarity=0.139  Sum_probs=152.8

Q ss_pred             CCCeEEeeccccceecc--ccEEEEEEEcCC-C-CCeeEEecCCccCCCCCce-EEEEeCCe----EEEEEcceecccce
Q psy12425        291 KAPEIIVPLRNANAIQN--HNAQFQCTITGC-P-KPTISWLKGSREITPSARH-HIFAEGDT----YTLIINSVYGVDAD  361 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g--~~~~l~c~~~~~-p-~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~l~i~~~~~~d~g  361 (591)
                      .+|.+...+.......|  +.+.|.|.+.+. | .+.|.|+++|..+...... .....++.    ..|.|.+...+|.|
T Consensus         6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g   85 (323)
T 2wqr_A            6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR   85 (323)
T ss_dssp             CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred             CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCC
Confidence            34555443333222334  699999999885 4 4799999999887654321 11222332    25777777778999


Q ss_pred             EEEEEEEeCCcceeeeeEEEE---ecCCcc-cCCCCcccceeecCCCeEEEEEeeecc-CCC---eEEEeeCC-eEeeec
Q psy12425        362 EYVCRAVNKGGVKSTKAELII---MTAPKF-NVPPRFRDTAYFDKGENVVVKIPFTGY-PKP---KITWYRDN-EVIESG  432 (591)
Q Consensus       362 ~y~c~a~n~~g~~~~~~~l~v---~~~p~~-~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~---~v~W~~~~-~~~~~~  432 (591)
                      .|+|.|.|..+.....+.+.+   ...|.+ ..+|   ....+..|+.+.|.|.+.|. |.+   .|.|++++ ..+...
T Consensus        86 ~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p---~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~  162 (323)
T 2wqr_A           86 TYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRP---SPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS  162 (323)
T ss_dssp             CEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCC---CHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCC
T ss_pred             cEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCC---CHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccc
Confidence            999999998775543322111   012222 1122   12236789999999999886 556   89999975 443322


Q ss_pred             cceEEEecC----CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEec-CCCCCCCCCeee-----eecCCeeEEEe
Q psy12425        433 GHFHVETSE----RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS-DRPDPPQFPTVE-----DIGHDSLALVW  502 (591)
Q Consensus       433 ~~~~~~~~~----~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~-~~p~~p~~~~~~-----~~~~~~v~l~W  502 (591)
                      ........+    ....|.|.++..+|.|.|+|.|.|..+.......+... ....+|. +.+.     ...+..++|.|
T Consensus       163 ~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~-v~~~~~~~~~~~g~~~~l~C  241 (323)
T 2wqr_A          163 TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPE-VYAFATPEWPGSRDKRTLAC  241 (323)
T ss_dssp             CCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCE-EEEEECCCCTTCTTEEEEEE
T ss_pred             cCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCE-EEEeCCChHHhcCCcEEEEE
Confidence            111111111    24579999999999999999999987544334433322 1112221 1111     11267888888


Q ss_pred             eccccCCCcceeeEEEEeeeCC----CCceEE-----ece---eeeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425        503 RAPIWDGGSNITNYIVEKREHP----MSSWIR-----VGN---TRFTTMAITGLSPGHQYEFRVYAENVYGR  562 (591)
Q Consensus       503 ~~p~~~~~~~~~~y~v~~~~~~----~~~~~~-----~~~---~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~  562 (591)
                      ........ . .  .+.|...+    ......     ..+   .....+.|......+.+.|+|.|.|..+.
T Consensus       242 ~~~g~~p~-~-~--~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          242 LIQNFMPE-D-I--SVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEEEEBSS-C-C--EEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             EeeeeeCC-C-c--EEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            75321111 1 1  22222221    111111     001   12346888888888889999999999875

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.78  E-value=6e-18  Score=149.18  Aligned_cols=185  Identities=16%  Similarity=0.220  Sum_probs=127.8

Q ss_pred             eccccceeccccEEEEEEEcCCC--CCeeEEecC--CccC-----------------CCCCceEEEEeC--CeEEEEEcc
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCP--KPTISWLKG--SREI-----------------TPSARHHIFAEG--DTYTLIINS  354 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~--~~~~-----------------~~~~~~~~~~~~--~~~~l~i~~  354 (591)
                      .+..+.+.+|+.+.|.|.+.+.+  .+.+.|++.  +..+                 ....++.+..++  ...+|.|.+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   86 (253)
T 3uzq_A            7 QSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSS   86 (253)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCC
Confidence            34566788999999999998854  778999882  1111                 012345555433  366899999


Q ss_pred             eecccceEEEEEEEeCCcce-eeeeEEEEecC---------------CcccCCCCcccceeecCCCeEEEEEeeeccCCC
Q psy12425        355 VYGVDADEYVCRAVNKGGVK-STKAELIIMTA---------------PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP  418 (591)
Q Consensus       355 ~~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~---------------p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~  418 (591)
                      ++.+|+|.|+|.|.|..+.. .....|.|...               |.+...+   ....+.+|+.+.|.|.+.+.+.+
T Consensus        87 v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p---~~~~v~~G~~v~L~C~~~~~~~~  163 (253)
T 3uzq_A           87 LTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTP---ASLAVSLGQRATISCRASENVDR  163 (253)
T ss_dssp             CCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEEC---SEEEECTTSCEEEEEEESSCCEE
T ss_pred             CCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcC---CeEEEeCCCCEEEEEEecCcccc
Confidence            99999999999999966554 34566777642               2222212   23567899999999999998887


Q ss_pred             ----eEEEeeC--CeEee------------eccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEEEec
Q psy12425        419 ----KITWYRD--NEVIE------------SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQIS  479 (591)
Q Consensus       419 ----~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v~  479 (591)
                          .+.|+++  +....            ...++..........|+|.+++.+|+|.|.|.|.|..+.. ..-..|.|.
T Consensus       164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~  243 (253)
T 3uzq_A          164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK  243 (253)
T ss_dssp             TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEc
Confidence                9999984  22111            1134555555567789999999999999999999976544 445567776


Q ss_pred             CCCCCC
Q psy12425        480 DRPDPP  485 (591)
Q Consensus       480 ~~p~~p  485 (591)
                      ..+.+|
T Consensus       244 ~~~~~~  249 (253)
T 3uzq_A          244 RPLEHH  249 (253)
T ss_dssp             CC----
T ss_pred             CCCCCc
Confidence            655443

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.78  E-value=5.9e-18  Score=142.28  Aligned_cols=78  Identities=28%  Similarity=0.582  Sum_probs=66.3

Q ss_pred             eeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      +..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+  .+|.|.++..+|+|.|+|.|.|..|.......|.|.
T Consensus       110 ~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          110 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             TTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTT--TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCC--CEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            456778899999999999999999999988877766654333  379999999999999999999999999888888775

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.78  E-value=1.6e-18  Score=149.96  Aligned_cols=177  Identities=16%  Similarity=0.289  Sum_probs=124.2

Q ss_pred             ccceeccccEEEEEEEcCCCC-----CeeEEecCCccC-------------CCCCceEEEE---eCCeEEEEEcceeccc
Q psy12425        301 NANAIQNHNAQFQCTITGCPK-----PTISWLKGSREI-------------TPSARHHIFA---EGDTYTLIINSVYGVD  359 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~-----~~v~W~~~~~~~-------------~~~~~~~~~~---~~~~~~l~i~~~~~~d  359 (591)
                      .+.+.+|+.+.|.|.+.+.+.     +.+.|++++...             ....+..+..   ..+..+|.|.+++.+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            456789999999999988764     789999976443             1112222221   0114479999999999


Q ss_pred             ceEEEEEEEeCCcceeeeeEEEEecC---CcccCCCCcccceeecCCCeEEEEEee-eccCCCeEEEee-CCeEeeeccc
Q psy12425        360 ADEYVCRAVNKGGVKSTKAELIIMTA---PKFNVPPRFRDTAYFDKGENVVVKIPF-TGYPKPKITWYR-DNEVIESGGH  434 (591)
Q Consensus       360 ~g~y~c~a~n~~g~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~-~~~~~~~~~~  434 (591)
                      +|.|+|.+.|. +.......|.|..+   |.+...+    ...+..|+.+.|.|.+ .+.|.+.+.|++ ++..+.....
T Consensus        84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~----~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~  158 (222)
T 4i0k_A           84 EGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP----NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT  158 (222)
T ss_dssp             CSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC---------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE
T ss_pred             CEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC----CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc
Confidence            99999999986 44455666666654   3333322    2245689999999999 899999999999 4554433222


Q ss_pred             eEEEec--CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        435 FHVETS--ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       435 ~~~~~~--~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      ......  +....|.|.++..+|.|.|+|.|.|..|.....+.+.|..+|
T Consensus       159 ~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          159 TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQP  208 (222)
T ss_dssp             EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred             eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence            222222  233568899999999999999999999999999999998877

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.78  E-value=9.1e-18  Score=144.27  Aligned_cols=78  Identities=22%  Similarity=0.385  Sum_probs=62.6

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeeeE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAE  379 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~  379 (591)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+.....         ..|.|.++...|.|.|+|.|.|..|.. +..+.
T Consensus       127 ~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~  197 (218)
T 3k0w_A          127 SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE  197 (218)
T ss_dssp             CEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEE
T ss_pred             ceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC---------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEE
Confidence            34567889999999999999999999999888765432         279999999999999999999988874 55677


Q ss_pred             EEEecCCc
Q psy12425        380 LIIMTAPK  387 (591)
Q Consensus       380 l~v~~~p~  387 (591)
                      |.|...+.
T Consensus       198 l~V~~~~~  205 (218)
T 3k0w_A          198 IIIDELNN  205 (218)
T ss_dssp             EEECC---
T ss_pred             EEEeCCcc
Confidence            77765433

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.78  E-value=2.7e-18  Score=147.41  Aligned_cols=86  Identities=29%  Similarity=0.504  Sum_probs=64.7

Q ss_pred             eeccccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceee-eeEEE
Q psy12425        304 AIQNHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST-KAELI  381 (591)
Q Consensus       304 ~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~-~~~l~  381 (591)
                      +..|+.+.|.|.+ .+.|.+.+.|++++..+..........++   .|.|.++..+|.|.|+|.|.|..|.... .+.|.
T Consensus       123 ~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~  199 (212)
T 2v9r_A          123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERESEVAELT  199 (212)
T ss_dssp             EETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCC---eEEEeeCCHhhCeeEEEEEecccCceecceEEEE
Confidence            4567788999998 88899999999999888765544333333   7999999999999999999999998755 48999


Q ss_pred             EecCCcccCCC
Q psy12425        382 IMTAPKFNVPP  392 (591)
Q Consensus       382 v~~~p~~~~~~  392 (591)
                      |..+|.+...|
T Consensus       200 V~~~P~~~~~P  210 (212)
T 2v9r_A          200 VLERPSFVKAA  210 (212)
T ss_dssp             EEC--------
T ss_pred             EEeCchHhhhc
Confidence            99988776544

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.78  E-value=7e-18  Score=156.22  Aligned_cols=171  Identities=12%  Similarity=0.173  Sum_probs=118.3

Q ss_pred             cccceeccccEEEEEEEcCC--CCCeeEEecC--CccC-----------------CCCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGC--PKPTISWLKG--SREI-----------------TPSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~--~~~~-----------------~~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ..+.+.+|+.+.|.|.+.+.  +.+.+.|+++  +..+                 ....++.+..+  +...+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (344)
T 1za6_B            8 GAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLR   87 (344)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCC
Confidence            44568899999999999886  3678999986  3221                 11345665544  356789999999


Q ss_pred             cccceEEEEEEEeCCcceeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCCeEee
Q psy12425        357 GVDADEYVCRAVNKGGVKSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDNEVIE  430 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~  430 (591)
                      .+|+|.|+|.|.|..+.......|.|..    +|.+...+   ....+..|+.+.|.|.+.|. |. +.+.|++++..+.
T Consensus        88 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~---~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~  164 (344)
T 1za6_B           88 SEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLA---PSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG  164 (344)
T ss_dssp             GGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEEC---CSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTT
T ss_pred             cccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEcc---ccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCc
Confidence            9999999999999665555567788773    23322111   11234689999999999987 64 7999999987542


Q ss_pred             eccceEEEec-C---CeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425        431 SGGHFHVETS-E---RHAILTIRDASNVDTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       431 ~~~~~~~~~~-~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  474 (591)
                      .......... +   ....|.|..+..+| |.|+|.|.|..|......
T Consensus       165 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~  211 (344)
T 1za6_B          165 VHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  211 (344)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEE
T ss_pred             eeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceE
Confidence            1100001111 1   13478999988878 999999999988654333

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.78  E-value=1.6e-16  Score=143.31  Aligned_cols=212  Identities=19%  Similarity=0.230  Sum_probs=162.0

Q ss_pred             EeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEec--CCCCCCCCcceEEecCceEEEEecCCCCCCCcceee
Q psy12425         46 VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITG--LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTH  123 (591)
Q Consensus        46 ~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~--~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~  123 (591)
                      ...+...+.|.+|.+...|.|++.|.|..|...... ..+..  .|.+|.. +.+......++.|+|.+|.    ..+..
T Consensus        69 ~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t~~~~~~P~~-l~~~~~~~~sv~l~W~~p~----~~~~~  142 (290)
T 3r8q_A           69 LAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ-GVVTTLENVSPPRR-ARVTDATETTITISWRTKT----ETITG  142 (290)
T ss_dssp             ECTTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEECCCCCCCCEE-EEEEEECSSCEEEEEECCS----CCCCE
T ss_pred             cCCCccEEEeCCCCCCCEEEEEEEEEeCCCCCCCcc-eeEecCCCCCCCce-eEEEEcCCCeEEEEEeCCC----CcccE
Confidence            344556899999999999999999999988775442 23333  3434433 5666778899999999874    36789


Q ss_pred             EEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecC
Q psy12425        124 YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGG  203 (591)
Q Consensus       124 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  203 (591)
                      |.+.+.......+...........+.+.+|.+++.|.|+|.|.|..|.+.....    ....   .|.+|..+.+.....
T Consensus       143 Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~~----~~~t---~p~~P~~l~~~~~~~  215 (290)
T 3r8q_A          143 FQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVI----DAST---AIDAPSNLRFLATTP  215 (290)
T ss_dssp             EEEEEEESSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEEE----EEEC---CCCCCEEEEEEEEET
T ss_pred             EEEEEEECCCCcceEEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCEEE----EecC---CCCCCCccEEEeeCC
Confidence            999998877666555555667788999999999999999999999887665321    1111   466677788888889


Q ss_pred             CeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425        204 DFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSL  274 (591)
Q Consensus       204 ~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~  274 (591)
                      +++.|+|.++.    ..+.+|.+.++..+...|............+.+.+|.++..|.|+++|.+..|.+.
T Consensus       216 ~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~  282 (290)
T 3r8q_A          216 NSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSE  282 (290)
T ss_dssp             TEEEEEEECCS----SCCCEEEEEEECTTSCCEECSSCCCTTCCEEEECSCCTTCEEEEEEEEEETTEECC
T ss_pred             CEEEEEEeCCC----CcccEEEEEEEeCCCCcceeEeccCCCccEEEECCCCCCCEEEEEEEEEeCCCcCC
Confidence            99999999863    36889999999877665543322234567899999999999999999999988764

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.78  E-value=1.7e-18  Score=148.34  Aligned_cols=169  Identities=14%  Similarity=0.239  Sum_probs=121.7

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecC--CccCC------------CCCceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKG--SREIT------------PSARHHIFAEGDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      .+.+.+|+.+.|.|.+.  +.+.+.|+++  +....            ...++.+...+...+|.|.+++.+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            45678999999999998  8889999984  22211            23466666677778999999999999999999


Q ss_pred             EEeCCc--ceeeeeEEEEe----cCCcccCCCCcccceeecCCCeEEEEEeeecc--CCCeEEEeeCCeEeeeccceE--
Q psy12425        367 AVNKGG--VKSTKAELIIM----TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY--PKPKITWYRDNEVIESGGHFH--  436 (591)
Q Consensus       367 a~n~~g--~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~~~~~~~~~~~~--  436 (591)
                      |.|..|  .......|.|.    .+|.+...+.   ...+..|+.+.|.|.+.|.  |.+.+.|+++|..+..+....  
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~  163 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPP---SSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTP  163 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEEECC---CHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCC
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEecCC---chhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCc
Confidence            999887  34556777777    3444433221   1122369999999999985  357999999999875421111  


Q ss_pred             EEecCC----eeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425        437 VETSER----HAILTIRDASNVDTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       437 ~~~~~~----~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  474 (591)
                      ....+.    ...|.|..+..+|.|.|+|.|.|..|.....+
T Consensus       164 ~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          164 SKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             EECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             eECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            111111    25688999988999999999999987554433

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.78  E-value=2.8e-17  Score=145.33  Aligned_cols=189  Identities=16%  Similarity=0.226  Sum_probs=126.8

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCC--CCCeeEEecCCc--c---C-------------CCCCceEEEEe--CCeEEE
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGC--PKPTISWLKGSR--E---I-------------TPSARHHIFAE--GDTYTL  350 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~~~--~---~-------------~~~~~~~~~~~--~~~~~l  350 (591)
                      +..+..+....+.+|+.+.|.|.+.+.  +.+.+.|++...  .   +             ....++.+..+  +...+|
T Consensus         9 ~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   88 (257)
T 3gkz_A            9 EVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYL   88 (257)
T ss_dssp             CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEE
T ss_pred             cEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEE
Confidence            344445566778999999999999884  578999988321  1   0             11234555533  346689


Q ss_pred             EEcceecccceEEEEEEEeCC----cceeeeeEEEEecC--------------CcccCCCCcccceeecCCCeEEEEEee
Q psy12425        351 IINSVYGVDADEYVCRAVNKG----GVKSTKAELIIMTA--------------PKFNVPPRFRDTAYFDKGENVVVKIPF  412 (591)
Q Consensus       351 ~i~~~~~~d~g~y~c~a~n~~----g~~~~~~~l~v~~~--------------p~~~~~~~~~~~~~~~~g~~~~l~c~~  412 (591)
                      .|.+++.+|+|.|+|.|.|..    +.......|.|..+              +.+...+   ....+.+|+.+.|.|.+
T Consensus        89 ~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p---~~~~v~~G~~v~L~C~~  165 (257)
T 3gkz_A           89 QLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSP---AIMSASPGEKVTLTCSA  165 (257)
T ss_dssp             EECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSC---SEEEECTTCCEEEEEEE
T ss_pred             EECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCC---ceEEEeCCCcEEEEEEE
Confidence            999999999999999999972    22234566777654              2222222   23567899999999999


Q ss_pred             eccCCC-eEEEeeC--CeEeee------------ccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEE
Q psy12425        413 TGYPKP-KITWYRD--NEVIES------------GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKI  476 (591)
Q Consensus       413 ~~~p~~-~v~W~~~--~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~  476 (591)
                      .+.+.+ .+.|++.  +.....            ..++..........|+|.+++.+|+|.|.|.|.|..... ..-..|
T Consensus       166 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l  245 (257)
T 3gkz_A          166 SSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKL  245 (257)
T ss_dssp             SSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEE
T ss_pred             ccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEE
Confidence            998888 9999983  222210            134555555567789999999999999999998864332 333456


Q ss_pred             EecCCCCC
Q psy12425        477 QISDRPDP  484 (591)
Q Consensus       477 ~v~~~p~~  484 (591)
                      .|...|.+
T Consensus       246 ~v~~~~~~  253 (257)
T 3gkz_A          246 EIKRAPHH  253 (257)
T ss_dssp             EECCC---
T ss_pred             EEEeCCCC
Confidence            66554433

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.77  E-value=2.1e-18  Score=148.52  Aligned_cols=75  Identities=16%  Similarity=0.311  Sum_probs=59.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCC--ceeEEEeCCe--EEEEEcccCCCCceEEEEEEEcCCee
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDY--IIIFIKEIRKEDAGDYTVNLSNSSGS   76 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~--~~l~i~~~~~~d~g~Y~c~~~n~~g~   76 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|+|..+....  ..++...++.  ..|.|.+++.+|+|.|+|.+.|..|.
T Consensus        16 p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~   94 (217)
T 2vr9_A           16 PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQ   94 (217)
T ss_dssp             CCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEE
T ss_pred             CCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCc
Confidence            667899999999999999999999999999999987652  2233333332  22378899999999999999887654

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.77  E-value=5.4e-18  Score=146.06  Aligned_cols=169  Identities=14%  Similarity=0.214  Sum_probs=116.9

Q ss_pred             ccceeccccEEEEEEEcCC-CCCeeEEecCCc--cC----------------CCCCceEEEEeCCeEEEEEcceecccce
Q psy12425        301 NANAIQNHNAQFQCTITGC-PKPTISWLKGSR--EI----------------TPSARHHIFAEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~--~~----------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  361 (591)
                      .+.+.+|+.+.|.|.+.+. |.+.+.|++...  ..                ....++.+...+...+|.|.+++.+|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA   88 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence            5668899999999999998 899999998321  10                0113555555667788999999999999


Q ss_pred             EEEEEEEeCCc-----ceeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeec-cCCC-eEEEeeCCeEee
Q psy12425        362 EYVCRAVNKGG-----VKSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKP-KITWYRDNEVIE  430 (591)
Q Consensus       362 ~y~c~a~n~~g-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~-~v~W~~~~~~~~  430 (591)
                      .|+|.|.|..|     .......|.|..    +|.+...+   .......|+.+.|.|.+.+ .|.+ .+.|+++|..+.
T Consensus        89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~---~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  165 (218)
T 3s96_B           89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFP---PSSEELKENKATLVCLISNFSPSGVTVAWKANGTPIT  165 (218)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEEC---CCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC-
T ss_pred             EEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeC---CCcccccCCcEEEEEEECcccCCCeEEEEEECCEECc
Confidence            99999999876     334456777773    33333211   1122345789999999998 5766 899999999886


Q ss_pred             eccceE--EEecCC---eeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425        431 SGGHFH--VETSER---HAILTIRDASNVDTAPYRVVAENDLGMDSA  472 (591)
Q Consensus       431 ~~~~~~--~~~~~~---~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~  472 (591)
                      .+....  ....+.   ...|.|.....+|.|.|+|.|.|..|....
T Consensus       166 ~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  212 (218)
T 3s96_B          166 QGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEK  212 (218)
T ss_dssp             -------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEE
T ss_pred             CceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccc
Confidence            532111  111111   244778888888899999999999875443

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.77  E-value=3.6e-17  Score=144.07  Aligned_cols=172  Identities=16%  Similarity=0.247  Sum_probs=121.6

Q ss_pred             eEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCcc--------------CCCCCceEEEEeCCeEEEEEcceeccc
Q psy12425        294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE--------------ITPSARHHIFAEGDTYTLIINSVYGVD  359 (591)
Q Consensus       294 ~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~--------------~~~~~~~~~~~~~~~~~l~i~~~~~~d  359 (591)
                      .+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++....              .....++.+...+...+|.|.+++.+|
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQED   85 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhh
Confidence            344445566788999999999999999999999984311              112346666667777899999999999


Q ss_pred             ceEEEEEEEeCCcce-eeeeEEEEecCCc----------------ccCCCCcccceeecCCCeEEEEEeeeccC--CCeE
Q psy12425        360 ADEYVCRAVNKGGVK-STKAELIIMTAPK----------------FNVPPRFRDTAYFDKGENVVVKIPFTGYP--KPKI  420 (591)
Q Consensus       360 ~g~y~c~a~n~~g~~-~~~~~l~v~~~p~----------------~~~~~~~~~~~~~~~g~~~~l~c~~~~~p--~~~v  420 (591)
                      +|.|+|.|.|..+.. .....|.|..++.                ............+.+|+.+.|.|.+.+.+  .+.+
T Consensus        86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  165 (250)
T 3esu_F           86 IGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWM  165 (250)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEE
T ss_pred             CEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEE
Confidence            999999999876653 3345666655320                00000111235578999999999999877  7899


Q ss_pred             EEeeC--CeEeee-----------------ccceEEEec--CCeeEEEEeccCCCcceeEEEEEEc
Q psy12425        421 TWYRD--NEVIES-----------------GGHFHVETS--ERHAILTIRDASNVDTAPYRVVAEN  465 (591)
Q Consensus       421 ~W~~~--~~~~~~-----------------~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~a~n  465 (591)
                      .|+++  +..+..                 ..++.+...  .....|+|.++..+|+|.|.|.|.|
T Consensus       166 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          166 NWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            99997  433211                 134444422  4556899999999999999999997

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.77  E-value=2.8e-17  Score=145.13  Aligned_cols=179  Identities=15%  Similarity=0.218  Sum_probs=124.8

Q ss_pred             ccceeccccEEEEEEEcCCC--CCeeEEecCC--ccC-----------------CCCCceEEEEe--CCeEEEEEcceec
Q psy12425        301 NANAIQNHNAQFQCTITGCP--KPTISWLKGS--REI-----------------TPSARHHIFAE--GDTYTLIINSVYG  357 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~l~i~~~~~  357 (591)
                      ...+.+|+.+.|.|.+.+.+  .+.+.|++..  ...                 ....++.+..+  ....+|.|.+++.
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (256)
T 3umt_A           11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS   90 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence            45588999999999999876  6789998732  111                 01234555433  3466899999999


Q ss_pred             ccceEEEEEEEeC----CcceeeeeEEEEec----------------CCcccCCCCcccceeecCCCeEEEEEeeeccCC
Q psy12425        358 VDADEYVCRAVNK----GGVKSTKAELIIMT----------------APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK  417 (591)
Q Consensus       358 ~d~g~y~c~a~n~----~g~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~  417 (591)
                      +|+|.|.|.+.|.    .+.......|.|..                +|.+...+   ....+..|+.+.|.|.+.+.+.
T Consensus        91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~v~~G~~v~L~C~~~~~~~  167 (256)
T 3umt_A           91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSP---SSLSASLGERVSITCRASQDIG  167 (256)
T ss_dssp             GGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEEC---SEEEECTTCCEEEEEEESSCCT
T ss_pred             ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCC---CeEEEECCCCEEEEEEEecCCC
Confidence            9999999999987    33334456777764                23322222   2356789999999999999999


Q ss_pred             CeEEEeeC--CeEee------------eccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEEEecCCC
Q psy12425        418 PKITWYRD--NEVIE------------SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISDRP  482 (591)
Q Consensus       418 ~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p  482 (591)
                      +.+.|++.  +....            ...++..........|+|.+++.+|+|.|.|.|.|..+.. .....|.|..++
T Consensus       168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence            99999984  22211            1244555555667789999999999999999999865433 345566666543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.77  E-value=1.3e-18  Score=149.06  Aligned_cols=169  Identities=15%  Similarity=0.229  Sum_probs=119.4

Q ss_pred             ccccceeccccEEEEEEEcCCCCCeeEEecCC--ccC------------CCCCceEEEEeCCeEEEEEcceecccceEEE
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGS--REI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      +....+.+|+.+.|.|.+.+.|.+.+.|+++.  ..+            ....++.+...+...+|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            34566889999999999999888899998843  221            1135666666677789999999999999999


Q ss_pred             EEEEeCCc-ce--eeeeEEEEe----cCCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCCeEeeeccce
Q psy12425        365 CRAVNKGG-VK--STKAELIIM----TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDNEVIESGGHF  435 (591)
Q Consensus       365 c~a~n~~g-~~--~~~~~l~v~----~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~  435 (591)
                      |.|.|..+ ..  .....+.|.    .+|.+...+.   ...+..|+.+.|.|.+.|. |. +.+.|+++|..+......
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  162 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPP---SPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKT  162 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCC---CHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCC---chHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeec
Confidence            99997322 21  233556664    3344333221   1223568999999999987 54 799999999888644221


Q ss_pred             EE-EecC----CeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        436 HV-ETSE----RHAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       436 ~~-~~~~----~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      .. ....    ....|.|.++..+|+|.|+|.|.|..+..
T Consensus       163 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          163 TKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             CCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             CCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            11 1111    13458899999999999999999997753

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.77  E-value=6.2e-17  Score=138.71  Aligned_cols=91  Identities=16%  Similarity=0.235  Sum_probs=75.2

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-CceEEec--eeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-SSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~~--~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      +|.+|.++.+...+.+++.|+|++|..+++..+.+|.|+++..+. ..|....  ......++|.+|.+++.|.|+|+|.
T Consensus       115 ~~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~  194 (214)
T 2ibg_A          115 PMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSF  194 (214)
T ss_dssp             CCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCcccEEEEccCCeEEEEEeCCCccCCCCcceEEEEEEECCCCcceEEeeccCCcceEEEeCCCCCCCEEEEEEEEE
Confidence            455677777777888999999998864566789999999998766 6777653  2235799999999999999999999


Q ss_pred             cCCcCCCCCCCcce
Q psy12425        558 NVYGRSDPSTTSDL  571 (591)
Q Consensus       558 n~~G~~~~s~~~~~  571 (591)
                      |..|.|++|....+
T Consensus       195 n~~G~g~~S~~~~~  208 (214)
T 2ibg_A          195 SAASASEFSALKQG  208 (214)
T ss_dssp             CSSCBCCCCCCEEE
T ss_pred             cCCccCCCcceEee
Confidence            99999999987654

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.77  E-value=4.7e-17  Score=145.55  Aligned_cols=250  Identities=15%  Similarity=0.134  Sum_probs=151.5

Q ss_pred             EeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS  375 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~  375 (591)
                      ...+.-..+..|.++.|.|.+... . .|.|.+++.....       ..++  +|.|.++...|+|.|+|.|   .|...
T Consensus        10 v~~~~~~~~~~G~~v~l~C~~~~~-~-~i~W~~~~~~~~~-------~~~~--~L~i~~~~~~d~G~YtC~~---~~~~~   75 (306)
T 3d85_D           10 VVELDWYPDAPGEMVVLTCDTPEE-D-GITWTLDQSSEVL-------GSGK--TLTIQVKEFGDAGQYTCHK---GGEVL   75 (306)
T ss_dssp             EEEEECCSSCCCEEEEEECSSSCC-S-SCEEEETTCCCCC-------EESS--EEEEEECSGGGCEEEEEEE---TTEEE
T ss_pred             EEeCCcccCccCCcEEEECCCCCC-C-cCEEEECCccccC-------CCCC--EEEEEecCcCCCceEEEee---CCccc
Confidence            333334456789999999998743 3 7999998875322       1222  7999999999999999999   35555


Q ss_pred             eeeEEEEecCC------cccCCCCcccceeecCCCeEEEEEeeeccC-CCeEEEeeCCeEeeeccceEEEecC-------
Q psy12425        376 TKAELIIMTAP------KFNVPPRFRDTAYFDKGENVVVKIPFTGYP-KPKITWYRDNEVIESGGHFHVETSE-------  441 (591)
Q Consensus       376 ~~~~l~v~~~p------~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~-------  441 (591)
                      ..+.+.|..++      .+...+.       ..-....|.|.+...+ .....|..++..... ..|......       
T Consensus        76 ~~~~l~v~~~~~~~~~t~i~~~~~-------~pp~~~~lsC~~~~~~~~~~C~W~pg~~~~l~-~~~~~~r~~~~~~~~~  147 (306)
T 3d85_D           76 SHSLLLLHKKEDGIWSTDILKDQK-------EPKNKTFLRCEAKNYSGRFTCWWLTTISTDLT-FSVKSSRGSSDPQGVT  147 (306)
T ss_dssp             EEEEEEEEEEETTEECCCSSCCCC----------CCCCCEEEBSSSSSEEEEEEEESCCSSEE-EEEEEEECSSSCEEEE
T ss_pred             ceEEEEEEeccCCcceeeeecccC-------CCCCCCcceEEcCCcccCcEEEecCCCCCcee-EEEEEEecCCCCcceE
Confidence            56666665422      1111100       0011235667666555 556667665431100 011110000       


Q ss_pred             ------CeeEEEEe-------------ccC----CCcceeEEEEEEcCCCccceEEEEEe--cCCCCCCCCCeeeeecC-
Q psy12425        442 ------RHAILTIR-------------DAS----NVDTAPYRVVAENDLGMDSAIVKIQI--SDRPDPPQFPTVEDIGH-  495 (591)
Q Consensus       442 ------~~~~l~i~-------------~~~----~~~~g~y~c~a~n~~g~~~~~~~~~v--~~~p~~p~~~~~~~~~~-  495 (591)
                            ....+.+.             ...    ....+.+.|.|.|..|..+....+.+  ..+|+||.++.+..... 
T Consensus       148 C~~~~~~~~~c~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~~~~~~~~  227 (306)
T 3d85_D          148 CGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNS  227 (306)
T ss_dssp             ECCCEEEEEEEC--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEEEEEC---
T ss_pred             CCCCCCCccceeecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehhcEecCCCceEEEEEecCC
Confidence                  00111111             111    12367789999999998766665554  36799999999887444 


Q ss_pred             CeeEEEeeccccCC---CcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcc
Q psy12425        496 DSLALVWRAPIWDG---GSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD  570 (591)
Q Consensus       496 ~~v~l~W~~p~~~~---~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~  570 (591)
                      ..+.|+|++|..-+   +-....|+|+|+......|........+++.|   .+++.|.|+|+|.|..|.|.+|+.+.
T Consensus       228 ~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~~~~~~~~~~~ts~~l---~~~~~Y~vqVRa~~~~~~G~WSeWS~  302 (306)
T 3d85_D          228 RQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATV---ICRKNASISVRAQDRYYSSSWSEWAS  302 (306)
T ss_dssp             -CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEESSSEEEE---CCCSSCEEEEEEEESSSCCCCCCCEE
T ss_pred             CcEEEEEcCCCCCcCCCceeeEEEEEEEEECCCCccEEEeeccccEEEE---eCCCeEEEEEEeccCCCCCCCCCCCC
Confidence            78999999875322   12347999999987766666554444456665   46999999999999999999998864

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.77  E-value=3.7e-17  Score=142.84  Aligned_cols=172  Identities=15%  Similarity=0.167  Sum_probs=120.2

Q ss_pred             EEeeccccceeccccEEEEEEEcCCCCCeeEEecCCc--cC------------CCCCceEEEEeCCeEEEEEcceecccc
Q psy12425        295 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--EI------------TPSARHHIFAEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       295 ~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  360 (591)
                      +...+..+.+.+|+.+.|.|.+.+.|.+.+.|+++..  ..            ....++.+...+...+|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence            3444566778999999999999999999999998531  11            113466666666778999999999999


Q ss_pred             eEEEEEEEeCCcce-eeeeEEEEecCCcc--------cCCCC--cccceeecCCCeEEEEEeeeccC--CCeEEEeeCC-
Q psy12425        361 DEYVCRAVNKGGVK-STKAELIIMTAPKF--------NVPPR--FRDTAYFDKGENVVVKIPFTGYP--KPKITWYRDN-  426 (591)
Q Consensus       361 g~y~c~a~n~~g~~-~~~~~l~v~~~p~~--------~~~~~--~~~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~-  426 (591)
                      |.|.|.|.|..+.. .....|.|..+|..        ..+..  ......+.+|+.+.|.|.+.+.|  .+.+.|++++ 
T Consensus        84 G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~  163 (242)
T 2znx_A           84 GMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFP  163 (242)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECT
T ss_pred             EEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCC
Confidence            99999999976532 33457777765530        00000  01123478999999999999876  5789999852 


Q ss_pred             -eEee----------------eccceEEEe--cCCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        427 -EVIE----------------SGGHFHVET--SERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       427 -~~~~----------------~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                       ....                ...++.+..  ......|+|.+++.+|+|.|.|.|.|.
T Consensus       164 ~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          164 GNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             TSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence             2221                123444443  234679999999999999999999984

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.77  E-value=1.1e-17  Score=143.23  Aligned_cols=168  Identities=13%  Similarity=0.190  Sum_probs=118.8

Q ss_pred             ccccceeccccEEEEEEEcCCC---CCeeEEecCC--ccC------------CCCCceEEEEeCCeEEEEEcceecccce
Q psy12425        299 LRNANAIQNHNAQFQCTITGCP---KPTISWLKGS--REI------------TPSARHHIFAEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p---~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  361 (591)
                      +....+.+|+.+.|.|.+.+.|   .+.+.|++++  ..+            ....++.+...+...+|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            4566789999999999999887   4789999853  221            1234566666677789999999999999


Q ss_pred             EEEEEEEeCCcce-eeeeEEEEe----cCCcccCCCCcccceeecCCCeEEEEEeeeccCCC--eEEEeeCCeEeeeccc
Q psy12425        362 EYVCRAVNKGGVK-STKAELIIM----TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP--KITWYRDNEVIESGGH  434 (591)
Q Consensus       362 ~y~c~a~n~~g~~-~~~~~l~v~----~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~--~v~W~~~~~~~~~~~~  434 (591)
                      .|.|.|.|..+.. .....+.|.    .+|.+...+.   ...+..|+.+.|.|.+.+.+++  .|.|+++|..+..+..
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~  163 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPP---SSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGME  163 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECC---CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCC---CHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCee
Confidence            9999999987643 234556664    2333332111   1123468899999999986443  8999999988864422


Q ss_pred             eE--EEecC----CeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        435 FH--VETSE----RHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       435 ~~--~~~~~----~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      ..  ....+    ....|.|.....+|.|.|+|.|.|....
T Consensus       164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          164 TTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             cCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            11  11111    1356889999999999999999998655

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.77  E-value=2.2e-17  Score=145.85  Aligned_cols=178  Identities=16%  Similarity=0.208  Sum_probs=125.5

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCC--CCCeeEEecCC--ccC-----------------CCCCceEEEEe--CCe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGC--PKPTISWLKGS--REI-----------------TPSARHHIFAE--GDT  347 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~~--~~~-----------------~~~~~~~~~~~--~~~  347 (591)
                      .+|.+...+..+.+.+|+.+.|.|.+.+.  +.+.+.|++..  ...                 ....++.+..+  +..
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            46677777788889999999999999883  67889998732  110                 11235555533  446


Q ss_pred             EEEEEcceecccceEEEEEEEeC------------CcceeeeeEEEEecCCcccC---------CC---CcccceeecCC
Q psy12425        348 YTLIINSVYGVDADEYVCRAVNK------------GGVKSTKAELIIMTAPKFNV---------PP---RFRDTAYFDKG  403 (591)
Q Consensus       348 ~~l~i~~~~~~d~g~y~c~a~n~------------~g~~~~~~~l~v~~~p~~~~---------~~---~~~~~~~~~~g  403 (591)
                      .+|.|.+++.+|+|.|.|.+.|.            .+.......|.|...+....         ++   .......+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            78999999999999999999986            33334456777766432100         00   11234567899


Q ss_pred             CeEEEEEeeeccCC-CeEEEeeC--CeEee------------eccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        404 ENVVVKIPFTGYPK-PKITWYRD--NEVIE------------SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       404 ~~~~l~c~~~~~p~-~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      +.+.|.|.+.+.+. +.+.|++.  +....            ...++.+........|+|.+++.+|+|.|.|.|.|..+
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            99999999998876 89999883  22221            12455555556678899999999999999999998643

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.76  E-value=2.3e-17  Score=144.17  Aligned_cols=168  Identities=15%  Similarity=0.299  Sum_probs=117.7

Q ss_pred             EeeccccceeccccEEEEEEEcCCCCCeeEEecCC--cc---------------CCCCCceEEEE-eCCeEEEEEcceec
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGS--RE---------------ITPSARHHIFA-EGDTYTLIINSVYG  357 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~---------------~~~~~~~~~~~-~~~~~~l~i~~~~~  357 (591)
                      ...+..+.+.+|+.+.|.|. .+.|.+.+.|+++.  ..               .....++.+.. .+...+|.|.+++.
T Consensus         4 ~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~   82 (238)
T 2p1y_A            4 TQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATP   82 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCG
T ss_pred             eECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCc
Confidence            34455677899999999999 78889999999852  11               01123454443 23456899999999


Q ss_pred             ccceEEEEEEEeCCcce-----eeeeEEEEecCCc------------ccCCCCcccceeecCCCeEEEEEeeeccCCCeE
Q psy12425        358 VDADEYVCRAVNKGGVK-----STKAELIIMTAPK------------FNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI  420 (591)
Q Consensus       358 ~d~g~y~c~a~n~~g~~-----~~~~~l~v~~~p~------------~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v  420 (591)
                      +|+|.|+|.|.|..|..     .....|.|...+.            +...+   ....+.+|+.+.|.|.+.+.|.+.+
T Consensus        83 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p---~~~~v~~G~~v~L~C~~~~~p~~~i  159 (238)
T 2p1y_A           83 SQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSP---QSLTVWEGETAILNCSYENSAFDYF  159 (238)
T ss_dssp             GGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEEC---SEEEEETTSCEEEEEECCCTTCCEE
T ss_pred             ccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccC---ceEEEeCCCeEEEEEEEecCCCCcE
Confidence            99999999999986531     2345677765442            11111   3355789999999999999999999


Q ss_pred             EEeeCCe-----Ee---------eeccceEEE--ecCCeeEEEEeccCCCcceeEEEEEEcCC
Q psy12425        421 TWYRDNE-----VI---------ESGGHFHVE--TSERHAILTIRDASNVDTAPYRVVAENDL  467 (591)
Q Consensus       421 ~W~~~~~-----~~---------~~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~c~a~n~~  467 (591)
                      .|++++.     .+         ....++.+.  .......|.|.++..+|+|.|.|.|.|..
T Consensus       160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9999641     11         123344443  23456789999999999999999999984

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=3.1e-17  Score=143.59  Aligned_cols=171  Identities=16%  Similarity=0.216  Sum_probs=123.2

Q ss_pred             EeeccccceeccccEEEEEEEcCCC----CCeeEEecCC--ccC------------CCCCceEEEEeCCeEEEEEcceec
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGCP----KPTISWLKGS--REI------------TPSARHHIFAEGDTYTLIINSVYG  357 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~p----~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~  357 (591)
                      ...+....+.+|+.+.|.|.+.+.|    .+.+.|+++.  ...            ....++.+...+...+|.|.+++.
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   84 (240)
T 1moe_A            5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (240)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCCh
Confidence            3445567789999999999999998    7899999853  211            113466666667778999999999


Q ss_pred             ccceEEEEEEEeCCcc-eeeeeEEEEecCCcccCCC---CcccceeecCCCeEEEEEeeeccC--CCeEEEeeC--CeEe
Q psy12425        358 VDADEYVCRAVNKGGV-KSTKAELIIMTAPKFNVPP---RFRDTAYFDKGENVVVKIPFTGYP--KPKITWYRD--NEVI  429 (591)
Q Consensus       358 ~d~g~y~c~a~n~~g~-~~~~~~l~v~~~p~~~~~~---~~~~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~--~~~~  429 (591)
                      +|+|.|+|.|.|..+. ......|.|..++....++   .......+..|+.+.|.|.+.+.|  .+.+.|+++  +...
T Consensus        85 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~  164 (240)
T 1moe_A           85 DDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGL  164 (240)
T ss_dssp             GGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCC
T ss_pred             hhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCc
Confidence            9999999999998665 3445677777654211110   011234678999999999999987  469999996  2221


Q ss_pred             e-----------------eccceEEEec--CCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        430 E-----------------SGGHFHVETS--ERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       430 ~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                      .                 ...++.+...  .....|.|.+++.+|+|.|.|.|.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          165 EWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             EEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             EEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            1                 1124444432  45678999999999999999999854

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.76  E-value=6.6e-16  Score=138.86  Aligned_cols=247  Identities=16%  Similarity=0.191  Sum_probs=178.7

Q ss_pred             CCeEEEEEEeccCCCceEEEEECC-----EEee------cCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKNG-----RVVQ------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS   78 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~~-----~~~~------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~   78 (591)
                      +-...|.+...+.....++|....     -.|.      .+....+........+.|.+|.+...|.+++.|.|..|...
T Consensus        16 ~~P~~l~~~~~~~~sv~l~W~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~   95 (283)
T 1tdq_A           16 DGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESD   95 (283)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCSSCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECC
T ss_pred             CCCcEEEEEecCCCeEEEEEECCCCceeEEEEEEEEecCCCCcEEEEeCCCCCEEEecCCCCCCEEEEEEEEECCCCCCC
Confidence            445566666655556778887643     1111      01112223334456889999999999999999999887753


Q ss_pred             EEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecC---cceEEEcCCcC
Q psy12425         79 GTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCH---DTTFIVQGLTE  155 (591)
Q Consensus        79 ~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~  155 (591)
                       ...+.+...|.+|.. +.+......++.|.|.+|.    ..+..|.+.+.......+........   ...+.+.+|.+
T Consensus        96 -~~~~~~~t~p~~P~~-l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  169 (283)
T 1tdq_A           96 -ASSTQFTTEIDAPKN-LRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVP  169 (283)
T ss_dssp             -CEEEEEECCCCCCEE-EEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCT
T ss_pred             -CeeEEEECCCCCCCc-eEEEecCCCeEEEEecCCC----CCccEEEEEEEeCCCCcceEEECCCCCcccceEEEecCCC
Confidence             355666677777765 6677778899999999876    36889999999887766655554444   78899999999


Q ss_pred             CcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc
Q psy12425        156 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA  235 (591)
Q Consensus       156 ~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~  235 (591)
                      ++.|.|+|.|.|..|.+.....    ....   .|.+|..+.+.....+++.|+|.++    ...+.+|.+.+...+.. 
T Consensus       170 ~t~Y~~~V~A~n~~g~s~~~~~----~~~t---~~~~P~~l~~~~~~~~sv~l~W~~p----~~~i~~Y~v~~~~~~~~-  237 (283)
T 1tdq_A          170 GTEYGVGISAVMNSKQSIPATM----NART---ELDSPRDLMVTASSETSISLIWTKA----SGPIDHYRITFTPSSGI-  237 (283)
T ss_dssp             TCEEEEEEEEEETTEECCCEEE----EEEC---CCCCCEEEEEEEECSSCEEEEEECC----CSCCSEEEEEEECSSSC-
T ss_pred             CCEEEEEEEEEeCCCCCcceEE----EecC---CCCCCCccEEeEecCCEEEEEEeCC----CCcccEEEEEEEcCCCC-
Confidence            9999999999998886654321    1111   3445667777788889999999985    24678999999876543 


Q ss_pred             cEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCC
Q psy12425        236 WQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLP  275 (591)
Q Consensus       236 ~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~  275 (591)
                      +.... .......+.|.+|.++..|.|+++|.|..|.+..
T Consensus       238 ~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~  276 (283)
T 1tdq_A          238 SSEVT-VPRDRTSYTLTDLEPGAEYIISITAERGRQQSLE  276 (283)
T ss_dssp             CEEEE-EESSCSEEEECCCCTTCCEEEEEEEEETTEECCC
T ss_pred             eeEEE-eCCCccEEEECCCCCCCEEEEEEEEEcCCCCCcc
Confidence            32222 2345678999999999999999999998887653

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.76  E-value=1.5e-17  Score=145.42  Aligned_cols=180  Identities=16%  Similarity=0.211  Sum_probs=125.7

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCc--c------------CCCCCceEEEEeCCeEEEEEcceecc
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--E------------ITPSARHHIFAEGDTYTLIINSVYGV  358 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~------------~~~~~~~~~~~~~~~~~l~i~~~~~~  358 (591)
                      +.+...+....+.+|+.+.|.|.+.+.+.+.+.|++...  .            .....++.+...+...+|.|.+++.+
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  104 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE  104 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence            344555566778999999999999999999999988421  1            11235666666677889999999999


Q ss_pred             cceEEEEEEEeCCcce-eeeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeecc-C-CCeEEEeeCCeEeeec
Q psy12425        359 DADEYVCRAVNKGGVK-STKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-P-KPKITWYRDNEVIESG  432 (591)
Q Consensus       359 d~g~y~c~a~n~~g~~-~~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p-~~~v~W~~~~~~~~~~  432 (591)
                      |+|.|+|.+.|..+.. .....+.|..   +|.+...+   ....+..|+.+.|.|.+.+. | .+.+.|+++|..+..+
T Consensus       105 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~---~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~  181 (237)
T 3sob_L          105 DFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFP---PSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  181 (237)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEEC---CCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             hCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeC---CChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCc
Confidence            9999999999877643 3345666643   33332211   11123358889999999884 4 5899999999887643


Q ss_pred             c--ceEEEecCC-----eeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        433 G--HFHVETSER-----HAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       433 ~--~~~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      .  ........+     ...|.|.....+|.|.|+|.|.|..........
T Consensus       182 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  231 (237)
T 3sob_L          182 SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKS  231 (237)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEE
T ss_pred             eeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeee
Confidence            1  111111111     456889999999999999999999765544333

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.76  E-value=1.3e-14  Score=136.11  Aligned_cols=432  Identities=14%  Similarity=0.092  Sum_probs=239.9

Q ss_pred             ceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccc
Q psy12425        104 HTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA  183 (591)
Q Consensus       104 ~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~  183 (591)
                      .....+|.++...+  .-+.|.+-+..    ....+. ....+.+.|..|.+++ +.+.+......|......   ....
T Consensus        10 ~~~~c~w~~~~~~~--~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~   78 (483)
T 3e0g_A           10 QVWQCSWKAPSGTG--RGTDYEVCIEQ----RSRSCY-QLEKTSIKIPALSHGD-YEITINSLHDFGSSTSKF---TLNE   78 (483)
T ss_dssp             TEEEEBCCCCSSSC--SSCCEEEEECS----SSCEEE-EESSSBCCEECCSSSC-CCEEEECSSCC----CCC---EECC
T ss_pred             eEEEEeccCCCCCC--CCceEEEEEeC----Ccccch-hhhccceEeecCCccc-eEEEEcccCCCCCCceeE---EEEc
Confidence            35678898776322  22346665333    111111 2366778889998888 445444444443333221   2223


Q ss_pred             cCCCCCCCCCCCCeEEeecC-CeEEEEEecCCCCC-CcceEEEEEEeeecCCCc--cEEEEe-eecC-Cceee----ecC
Q psy12425        184 KSPYDKPSPPGIPVVTQVGG-DFVNLSWDKPLDDG-GSRIQGYWIDKHEVGSDA--WQRVNV-AICA-PSQIN----IPN  253 (591)
Q Consensus       184 ~~~~~~p~~~~~~~~~~~~~-~~v~l~w~~~~~~~-~~~~~~y~~~~~~~~~~~--~~~~~~-~~~~-~~~~~----i~~  253 (591)
                      +.....|..|..+.+..... ..+.|+|......- ...-..|.|+........  |...-. .... ...+.    -.-
T Consensus        79 ~~~~~~p~~p~~l~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~i~i~r~~~~~~v~~~~~~~~~~~~~~~~~w~w~s~~  158 (483)
T 3e0g_A           79 QNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDM  158 (483)
T ss_dssp             SCCEECCCCCCBCCCEEETTTTEEEEEEEECGGGCCSCCEEEEEEEEESSSSCEEEEEEEEEECGGGCCEEEEEEEECSS
T ss_pred             ccceeccCCCceEEEEecCCCcEEEEEEeCCCCCCCcccceEEEEEEEEcCCccEEEEEEEEEEecCCCceEEEEecCCC
Confidence            33335677777777766655 89999998753221 113445777766554332  222111 1101 11111    111


Q ss_pred             cccCCcEEEEEEEE-c---CCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecC
Q psy12425        254 LIEGRQYEFRVYAQ-N---EAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKG  329 (591)
Q Consensus       254 l~~~~~~~y~c~a~-n---~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~  329 (591)
                      -.+...+..++++. +   -.|.+.++.-+...++.... ...+  ...+++..+..|.++++.|.....   ......+
T Consensus       159 plec~~h~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~~-~~~~--~ifP~~~vv~~GS~vt~~Ci~~~~---~~~~~l~  232 (483)
T 3e0g_A          159 PLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIP-DSQT--KVFPQDKVILVGSDITFCCVSQEK---VLSALIG  232 (483)
T ss_dssp             CTTSSCEEEEEEEEEECTTCCSEECCCCCCCCEEECCCC-CSSC--CEESCSEEEETTCCEEEEECCSSC---EEEEESS
T ss_pred             CCCCCccEEEEEEEecccccCCCCCCcCCCChhhccccC-CCCc--EEeccCCEEeCCCCEEEEEEeCcc---ccceecC
Confidence            12456677788877 2   24554556555444443211 1122  445566678899999999987632   2222222


Q ss_pred             CccCCCCCceEEEEeCCeEEEEEcceecc--cceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEE
Q psy12425        330 SREITPSARHHIFAEGDTYTLIINSVYGV--DADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV  407 (591)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~  407 (591)
                      +.     .......++....+++.|+...  ....|.|...    .......+.+..+|..+      ........+.-.
T Consensus       233 ~~-----~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~----~~~~g~~l~vg~PP~~P------~nlsC~s~~~~s  297 (483)
T 3e0g_A          233 HT-----NCPLIHLDGENVAIKIRNISVSASSGTNVVFTTE----DNIFGTVIFAGYPPDTP------QQLNCETHDLKE  297 (483)
T ss_dssp             SC-----CBCCEECSSSCEEEEECSCCCCCSSCEEEEEEES----SCEEEEEEEEECCCCCC------EEEEEEBSSTTE
T ss_pred             cc-----cceeEEecCCEEEEEEeCCCCccCccceEEEecC----CcccceEEECcCCCCCC------CccEEEecCCCE
Confidence            11     1111223444567888888653  2345999852    23445667777766422      111111111114


Q ss_pred             EEEeeeccC-C-------C--eEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        408 VKIPFTGYP-K-------P--KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       408 l~c~~~~~p-~-------~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      |.|...... .       .  .+.+.+.+....- ..+.. ..+......+..+.....|.+++.|.|..|.......+.
T Consensus       298 ltCsW~pg~dt~l~G~~~t~YtL~y~~~g~~~~C-~~~~~-~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~S~~~~~  375 (483)
T 3e0g_A          298 IICSWNPGRVTALVGPRATSYTLVESFSGKYVRL-KRAEA-PTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVN  375 (483)
T ss_dssp             EEEEEECCSCCSCCGGGCCEEEEEETTTCCEEEE-CCCSS-CSCSCEEEEEECCTTCCCEEEEEEEECSSCEEEEEEEEC
T ss_pred             EEEEECCCCcCCcCCCCCeeEEEEEEECCCCccc-cCCcc-cCCCEEEEEEccCCCCcEEEEEEEEEeCCCCcccceEEE
Confidence            555543211 1       1  2333322221100 00000 012345678888888889999999999999876544444


Q ss_pred             ec--CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCC-ceEEece----eeeeEEEEcCcccCceE
Q psy12425        478 IS--DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS-SWIRVGN----TRFTTMAITGLSPGHQY  550 (591)
Q Consensus       478 v~--~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~-~~~~~~~----~~~~~~~i~~l~~~~~Y  550 (591)
                      +.  .+|.||.++.+.....+.+.|+|++|.. .+..+..|+|+|+..... .|....-    .....+.+.+|.|++.|
T Consensus       376 ~~~~VkP~PP~nl~v~~~~stsl~LsW~~P~~-~~~~~L~YeVrYr~~~~~~~~~~vsv~~~~~~~~s~~l~~L~PgT~Y  454 (483)
T 3e0g_A          376 ITEKVYPHTPTSFKVKDINSTAVKLSWHLPGN-FAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLY  454 (483)
T ss_dssp             GGGGBCCCCCEEEEECCSSSSSCCEEEECCSC-CTTSBCCCEEEEECSSSCCCEEECCCBCCSSSBCCCCCCSCCSSSSC
T ss_pred             eccccCCCCCeeeEEEEecCCeEEEEECCCCC-CCCceEEEEEEEEECCCCCceEEEEEeccCCceeEEEEeccCCCcEE
Confidence            33  4789999999887788999999998863 334678999999987654 3554321    12336789999999999


Q ss_pred             EEEEEEEcCCcC---CCCCCCcce
Q psy12425        551 EFRVYAENVYGR---SDPSTTSDL  571 (591)
Q Consensus       551 ~~~v~A~n~~G~---~~~s~~~~~  571 (591)
                      .|+|+|. ..|.   |++|.+..+
T Consensus       455 ~vrVRA~-~~g~g~WSeWS~~~~f  477 (483)
T 3e0g_A          455 TFRIRCS-TETFWKWSKWSNKKQH  477 (483)
T ss_dssp             EEEEECC-CSSCCCCCCCCCCCCC
T ss_pred             EEEEEEe-eCCCCCcCCCCCceee
Confidence            9999999 6777   566655444

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=4.2e-17  Score=146.00  Aligned_cols=181  Identities=14%  Similarity=0.211  Sum_probs=125.0

Q ss_pred             ccccceeccccEEEEEEEcCCC--CCeeEEecCCc--cCC-----------------CCCceEEEEe--CCeEEEEEcce
Q psy12425        299 LRNANAIQNHNAQFQCTITGCP--KPTISWLKGSR--EIT-----------------PSARHHIFAE--GDTYTLIINSV  355 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~~--~~~-----------------~~~~~~~~~~--~~~~~l~i~~~  355 (591)
                      +....+.+|+.+.|.|.+.+.+  .+.+.|++++.  ...                 ...++.+..+  +...+|.|.++
T Consensus        33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  112 (282)
T 1qok_A           33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL  112 (282)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence            3456788999999999998875  68899998532  110                 1235555543  34678999999


Q ss_pred             ecccceEEEEEEEeCCcc-----eeeeeEEEEecCCcc---------cCCCCc---ccceeecCCCeEEEEEeeeccCCC
Q psy12425        356 YGVDADEYVCRAVNKGGV-----KSTKAELIIMTAPKF---------NVPPRF---RDTAYFDKGENVVVKIPFTGYPKP  418 (591)
Q Consensus       356 ~~~d~g~y~c~a~n~~g~-----~~~~~~l~v~~~p~~---------~~~~~~---~~~~~~~~g~~~~l~c~~~~~p~~  418 (591)
                      +.+|+|.|.|.+.|..|.     ......|.|...|..         ..++.+   .....+.+|+.++|.|.+.+.+ +
T Consensus       113 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~  191 (282)
T 1qok_A          113 TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-S  191 (282)
T ss_dssp             CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-S
T ss_pred             ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-c
Confidence            999999999999998761     123457777765420         011111   1234578999999999999999 9


Q ss_pred             eEEEee--CCeEee------------eccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEEEEEecC
Q psy12425        419 KITWYR--DNEVIE------------SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQISD  480 (591)
Q Consensus       419 ~v~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~  480 (591)
                      .+.|++  ++..+.            ...++.+........|+|.++..+|+|.|.|.|.|..+.. .....|.|..
T Consensus       192 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          192 YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence            999999  554331            1245555545567789999999999999999999864322 3345566654

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.76  E-value=5.7e-18  Score=151.17  Aligned_cols=182  Identities=13%  Similarity=0.212  Sum_probs=123.8

Q ss_pred             CeEEeeccccceeccccEEEEEEEc---CCCCCeeEEecCCccCCCC------------------CceEEEE--eCCeEE
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTIT---GCPKPTISWLKGSREITPS------------------ARHHIFA--EGDTYT  349 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~---~~p~~~v~W~~~~~~~~~~------------------~~~~~~~--~~~~~~  349 (591)
                      +.+...+..+.+.+|+.+.|.|.+.   +.+.+.+.|++++......                  .+..+..  .....+
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            3444455567789999999999997   7788899999965433221                  1222110  112247


Q ss_pred             EEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEee---eccCCCeEEEeeCC
Q psy12425        350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF---TGYPKPKITWYRDN  426 (591)
Q Consensus       350 l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~---~~~p~~~v~W~~~~  426 (591)
                      |.|.+++.+|+|.|+|.|.|..+.......+.+...|.      ......+..|+.+.|.|.+   .+.|.+.+.|++++
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~------~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~  159 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE------EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS  159 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC------CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc------CCCccccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence            99999999999999999999766554433333333222      1134567899999999999   67799999999943


Q ss_pred             e-Eeeec-----------------c----ceEEE--ecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        427 E-VIESG-----------------G----HFHVE--TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       427 ~-~~~~~-----------------~----~~~~~--~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      . .....                 .    +..+.  .......|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  237 (268)
T 3mj6_A          160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ  237 (268)
T ss_dssp             TTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence            2 11100                 0    11111  013467899999999999999999999999988888888854

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.76  E-value=1.4e-17  Score=141.51  Aligned_cols=79  Identities=27%  Similarity=0.426  Sum_probs=64.8

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL  380 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l  380 (591)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+....  .+...+  ..|.|.++..+|.|.|+|.|.|..|.....+.|
T Consensus       122 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--~~~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  197 (201)
T 3s97_C          122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EISTSG--AVLKIFNIQLEDEGIYECEAENIRGKDKHQARI  197 (201)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC--EEETTT--TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce--eecCCC--CEEEEccCChhhCEEEEEEEEecCCceeeeEEE
Confidence            3446788899999999999999999999998776442  222222  379999999999999999999999999888888


Q ss_pred             EEe
Q psy12425        381 IIM  383 (591)
Q Consensus       381 ~v~  383 (591)
                      .|.
T Consensus       198 ~V~  200 (201)
T 3s97_C          198 YVQ  200 (201)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            775

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.76  E-value=1.5e-16  Score=135.15  Aligned_cols=186  Identities=19%  Similarity=0.295  Sum_probs=140.1

Q ss_pred             EecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCC-CceEEEEe--ecCcceEEEcCCcCCcEEEE
Q psy12425         85 ITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM-PHWICIST--TCHDTTFIVQGLTEGQEYLF  161 (591)
Q Consensus        85 v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~-~~~~~~~~--~~~~~~~~i~~l~~~~~y~~  161 (591)
                      |...|.+|.. +.+.. ...++.|+|.+|. +++..+..|.++++.... ..|.....  ......+.+ +|.+++.|.|
T Consensus         2 v~~~P~~P~~-~~~~~-~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~   77 (205)
T 1cfb_A            2 VQDVPNAPKL-TGITC-QADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTF   77 (205)
T ss_dssp             CCCCCCCCEE-EEEEE-CSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEE
T ss_pred             cccCCCCCCC-cEEEe-cCCEEEEEEECcc-cCCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEE
Confidence            4567787776 56777 8899999999885 556789999999987643 56754432  234556666 9999999999


Q ss_pred             EEEEEccCCCCCCCC-ccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCC-CCCcceEEEEEEeeecCCCc-cEE
Q psy12425        162 HVMAVNENGMGPPLE-GINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLD-DGGSRIQGYWIDKHEVGSDA-WQR  238 (591)
Q Consensus       162 ~~~a~n~~g~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~-~~~~~~~~y~~~~~~~~~~~-~~~  238 (591)
                      +|.|.|..|.+..+. .....+.  ...++.+|..+.+.....+++.|+|.+|.. ..+..+.+|.|.++..+... |..
T Consensus        78 ~V~A~n~~G~~~~s~~~~~~~T~--~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~  155 (205)
T 1cfb_A           78 RVIAFNKIGASPPSAHSDSCTTQ--PDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWEN  155 (205)
T ss_dssp             EEEEEETTEECCCCCCCCCEEEC--CCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEE
T ss_pred             EEEEEECCccCCCCCCceeEEcC--CcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCCCcEE
Confidence            999999999887763 2222221  122334677788888888899999999862 23346889999998876654 777


Q ss_pred             EEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC
Q psy12425        239 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS  276 (591)
Q Consensus       239 ~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s  276 (591)
                      ..........+.|.+|.++..|.|+++|.|..|.+..+
T Consensus       156 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s  193 (205)
T 1cfb_A          156 NNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVA  193 (205)
T ss_dssp             EEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSC
T ss_pred             EEecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCC
Confidence            66554456899999999999999999999999988743

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.76  E-value=1.3e-17  Score=121.76  Aligned_cols=87  Identities=33%  Similarity=0.557  Sum_probs=78.9

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCC--ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS   78 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~   78 (591)
                      .|.++.+.+|+++.|.|.+.|.|.|.|.|+|||+.|....  ++.+...++..+|.|.+++.+|+|.|+|.|.|..|..+
T Consensus        11 ~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   90 (100)
T 3knb_A           11 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDS   90 (100)
T ss_dssp             CCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEE
Confidence            3788999999999999999999999999999999997653  56677777888999999999999999999999999999


Q ss_pred             EEEEEEEec
Q psy12425         79 GTFTINITG   87 (591)
Q Consensus        79 ~~~~l~v~~   87 (591)
                      .++.|.|..
T Consensus        91 ~~~~l~V~~   99 (100)
T 3knb_A           91 ATVNIHIRS   99 (100)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEE
Confidence            999998864

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.76  E-value=2e-17  Score=142.13  Aligned_cols=170  Identities=18%  Similarity=0.215  Sum_probs=117.0

Q ss_pred             cccceeccccEEEEEEE-cCCC-CCeeEEecCCc--cC------------CCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425        300 RNANAIQNHNAQFQCTI-TGCP-KPTISWLKGSR--EI------------TPSARHHIFAEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~-~~~p-~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      ....+.+|+.+.|.|.+ .+.+ .+.+.|++++.  .+            ....++.+...+...+|.|.+++.+|+|.|
T Consensus         8 ~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   87 (216)
T 2xzc_L            8 PSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (216)
T ss_dssp             SEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEE
Confidence            44568899999999995 4443 57999998532  11            113466666667778999999999999999


Q ss_pred             EEEEEeCCc--ceeeeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeec-cCCC-eEEEeeCCeEeeeccceE
Q psy12425        364 VCRAVNKGG--VKSTKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKP-KITWYRDNEVIESGGHFH  436 (591)
Q Consensus       364 ~c~a~n~~g--~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~-~v~W~~~~~~~~~~~~~~  436 (591)
                      +|.|.|..+  .......|.|..   +|.+...+.   ......|+.+.|.|.+.| .|.+ .|.|+++|..+..+....
T Consensus        88 ~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  164 (216)
T 2xzc_L           88 YCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPP---SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQES  164 (216)
T ss_dssp             EEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECC---CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEE
T ss_pred             EEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCC---ChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEe
Confidence            999999876  223345666653   333332111   111235889999999998 4554 899999999876541111


Q ss_pred             --EEecCC-----eeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425        437 --VETSER-----HAILTIRDASNVDTAPYRVVAENDLGMDSA  472 (591)
Q Consensus       437 --~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~  472 (591)
                        .....+     .+.|.|.....+|.|.|+|.|.|.......
T Consensus       165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (216)
T 2xzc_L          165 VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV  207 (216)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred             cCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCce
Confidence              111111     247899999999999999999998765443

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.75  E-value=5.9e-17  Score=142.38  Aligned_cols=169  Identities=19%  Similarity=0.229  Sum_probs=119.5

Q ss_pred             EeeccccceeccccEEEEEEEcCCC-----CCeeEEecCC--ccC------------CCCCceEEEEeCCeEEEEEccee
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGCP-----KPTISWLKGS--REI------------TPSARHHIFAEGDTYTLIINSVY  356 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~p-----~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~  356 (591)
                      ...+..+.+.+|+.+.|.|.+.+.+     .+.+.|+++.  ...            ....++.+...+...+|.|.+++
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   84 (247)
T 1svz_A            5 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   84 (247)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             EecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCC
Confidence            3445567789999999999999988     6899998842  111            01346666666777899999999


Q ss_pred             cccceEEEEEEEeCCcce-eeeeEEEEecCCc------------ccCCCCcccceeecCCCeEEEEEeeeccC--CCeEE
Q psy12425        357 GVDADEYVCRAVNKGGVK-STKAELIIMTAPK------------FNVPPRFRDTAYFDKGENVVVKIPFTGYP--KPKIT  421 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~------------~~~~~~~~~~~~~~~g~~~~l~c~~~~~p--~~~v~  421 (591)
                      .+|+|.|.|.+.|..+.. .....|.|..++.            +....  .....+..|+.+.|.|.+.+.+  .+.+.
T Consensus        85 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  162 (247)
T 1svz_A           85 AEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQ--SGPELKKPGETVKISCKATNYAFTDYSMH  162 (247)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEE--CCCEEECTTCCEEEEEEEESSCGGGSCEE
T ss_pred             HHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeC--CCceeecCCCcEEEEEEEcCcccCCcEEE
Confidence            999999999999976542 3346677766431            11100  1123478999999999999875  57999


Q ss_pred             EeeCC--eEee-----------------eccceEEEe--cCCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        422 WYRDN--EVIE-----------------SGGHFHVET--SERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       422 W~~~~--~~~~-----------------~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                      |++++  ....                 ...++.+..  ......|.|.+++.+|+|.|.|.|.|.
T Consensus       163 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          163 WVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99963  2110                 023444443  345679999999999999999999995

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.75  E-value=1.2e-16  Score=136.95  Aligned_cols=186  Identities=20%  Similarity=0.321  Sum_probs=141.8

Q ss_pred             CCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCC-CceEEEEee------------cCcceEEEcCCcCC
Q psy12425         90 GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM-PHWICISTT------------CHDTTFIVQGLTEG  156 (591)
Q Consensus        90 ~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~------------~~~~~~~i~~l~~~  156 (591)
                      .+|.. +.+......++.|+|.+|...+ ..+..|.|+++..+. ..|..+...            .....+.+.+|.++
T Consensus         3 ~pP~~-~~~~~~~~~sv~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   80 (214)
T 2ibg_A            3 YPPTP-PNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQ   80 (214)
T ss_dssp             CCCCC-CEEEEEETTEEEEEEEEECCSS-CCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTT
T ss_pred             CCCCC-CEeeEecCCEEEEEEECCCCCC-CCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCC
Confidence            44555 3566778899999999888554 589999999988654 667665421            34567899999999


Q ss_pred             cEEEEEEEEEccCCCCCCCCccCccccc--CCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCC-
Q psy12425        157 QEYLFHVMAVNENGMGPPLEGINPIKAK--SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGS-  233 (591)
Q Consensus       157 ~~y~~~~~a~n~~g~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~-  233 (591)
                      +.|.|+|.|.|..|.+..+.....+...  .+..+|.+|..+.+.....+++.|+|.++....+..+.+|.|.++..+. 
T Consensus        81 t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~  160 (214)
T 2ibg_A           81 HTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSA  160 (214)
T ss_dssp             CEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCC
T ss_pred             CEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCCccCCCCcceEEEEEEECCCC
Confidence            9999999999999887665533322221  2333455566677777788899999999864455689999999998776 


Q ss_pred             CccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCC
Q psy12425        234 DAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS  277 (591)
Q Consensus       234 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~  277 (591)
                      ..|............++|.+|.++..|.|+++|.|..|.+..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  204 (214)
T 2ibg_A          161 GEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSA  204 (214)
T ss_dssp             SCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCC
T ss_pred             cceEEeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcc
Confidence            67887766554567899999999999999999999999877553

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.75  E-value=1.1e-16  Score=136.86  Aligned_cols=81  Identities=23%  Similarity=0.371  Sum_probs=63.4

Q ss_pred             eeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeeeEEEE
Q psy12425        304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAELII  382 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~l~v  382 (591)
                      +..|+.+.|.|.+.+.| +.+.|++++..+....++.+...+  .+|.|.++..+|.|.|+|.|.|..|.. +..+.|.|
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v  198 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI  198 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETTT--TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECC
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCC--CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeE
Confidence            45677788999998876 799999999998877777665443  379999999999999999999999987 44567777


Q ss_pred             ecCCc
Q psy12425        383 MTAPK  387 (591)
Q Consensus       383 ~~~p~  387 (591)
                      ..+|.
T Consensus       199 ~~~~~  203 (208)
T 3r4d_A          199 IFDPH  203 (208)
T ss_dssp             C----
T ss_pred             EeCCc
Confidence            66553

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.75  E-value=2.4e-17  Score=124.69  Aligned_cols=95  Identities=22%  Similarity=0.363  Sum_probs=88.0

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|++..+....++.+.......+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus        14 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~   93 (114)
T 2cqv_A           14 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQV   93 (114)
T ss_dssp             CCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCE
T ss_pred             CCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEE
Confidence            67889999999999999999999999999999999888888888777788999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCc
Q psy12425         82 TINITGLPGPPIGPL   96 (591)
Q Consensus        82 ~l~v~~~p~~p~~~~   96 (591)
                      .|.|...|.+|..+.
T Consensus        94 ~l~V~~~p~~P~~p~  108 (114)
T 2cqv_A           94 NLTVVDKPDPPAGTP  108 (114)
T ss_dssp             EEEEECSCSCCCCCT
T ss_pred             EEEEECCCCCCCCCc
Confidence            999999999888764

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.75  E-value=4.9e-17  Score=140.00  Aligned_cols=173  Identities=16%  Similarity=0.215  Sum_probs=116.0

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--ccCC-----------------CCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REIT-----------------PSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ....+.+|+.+.|.|.+.+.+  .+.+.|+++.  ..+.                 ...++.+..+  +...+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (219)
T 1c1e_H            8 GPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLK   87 (219)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCC
Confidence            445688999999999999875  6899999863  2211                 1235555443  345689999999


Q ss_pred             cccceEEEEEEEeCCcc----eeeeeEEEEecC----CcccCCCCcccceeecCCCeEEEEEeeec-cCCC-eEEEeeCC
Q psy12425        357 GVDADEYVCRAVNKGGV----KSTKAELIIMTA----PKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKP-KITWYRDN  426 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~----~~~~~~l~v~~~----p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~-~v~W~~~~  426 (591)
                      .+|+|.|+|.+.|..+.    ......|.|...    |.+...+   ....+..|+.+.|.|.+.| .|.| .|.|++++
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~---~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  164 (219)
T 1c1e_H           88 NEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLA---PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (219)
T ss_dssp             GGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEEC---CCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             cccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEec---CccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence            99999999999998742    223466777653    3332111   1123467999999999998 8998 99999998


Q ss_pred             eEeeeccceEEEecC---CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        427 EVIESGGHFHVETSE---RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       427 ~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      ..+...........+   ....|.|..... |.|.|+|.|.|..|.......+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i  216 (219)
T 1c1e_H          165 LSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI  216 (219)
T ss_dssp             BCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEEC
T ss_pred             cccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEec
Confidence            764211111111111   134688855444 5599999999998875444433

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.75  E-value=2.8e-17  Score=140.15  Aligned_cols=186  Identities=27%  Similarity=0.371  Sum_probs=138.8

Q ss_pred             CCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeee---cCCceeeecCcccCCcEEEEE
Q psy12425        188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI---CAPSQINIPNLIEGRQYEFRV  264 (591)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~~~~~y~c  264 (591)
                      .+|.+|..+.+..... ++.|+|.+|...++..+.+|.|+++..+...|.......   .....+.+.+|.+++.|.|+|
T Consensus         7 ~~P~~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   85 (209)
T 2vkw_A            7 DTPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL   85 (209)
T ss_dssp             CCCCCCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEEE
T ss_pred             CCCcCCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEEEEE
Confidence            4677777777776666 689999998766777799999999988888887765432   124588999999999999999


Q ss_pred             EEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEe
Q psy12425        265 YAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE  344 (591)
Q Consensus       265 ~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~  344 (591)
                      .|.|..|.+..+..   +.+.                                                           
T Consensus        86 ~A~n~~G~~~~s~~---~~~~-----------------------------------------------------------  103 (209)
T 2vkw_A           86 AALNGKGLGEISAA---SEFK-----------------------------------------------------------  103 (209)
T ss_dssp             EEEETTEECCCCCC---EEEE-----------------------------------------------------------
T ss_pred             EEEcCCcccCCccc---cccc-----------------------------------------------------------
Confidence            99998876542210   0000                                                           


Q ss_pred             CCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEee
Q psy12425        345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR  424 (591)
Q Consensus       345 ~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~  424 (591)
                                                             ..      +                                
T Consensus       104 ---------------------------------------T~------~--------------------------------  106 (209)
T 2vkw_A          104 ---------------------------------------TQ------P--------------------------------  106 (209)
T ss_dssp             ---------------------------------------CC------C--------------------------------
T ss_pred             ---------------------------------------cc------C--------------------------------
Confidence                                                   00      0                                


Q ss_pred             CCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeec
Q psy12425        425 DNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRA  504 (591)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~  504 (591)
                                                                            ..+|.+|..+.+...+.+++.|+|.+
T Consensus       107 ------------------------------------------------------~~~P~~P~~~~~~~~~~~sv~l~W~~  132 (209)
T 2vkw_A          107 ------------------------------------------------------VREPSAPKLEGQMGEDGNSIKVNLIK  132 (209)
T ss_dssp             ------------------------------------------------------SCSCCCCEEEEEECTTSSCEEEEEEC
T ss_pred             ------------------------------------------------------CCCCCCCcccccccccCCeEEEEEEC
Confidence                                                                  01455666566666788899999998


Q ss_pred             cccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCc
Q psy12425        505 PIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS  569 (591)
Q Consensus       505 p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~  569 (591)
                      | .++++.+.+|.|+|+. ....|...  .......+.|.+|.+++.|.|+|+|.|..|.|++|...
T Consensus       133 p-~~~~~~i~~Y~v~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~  197 (209)
T 2vkw_A          133 Q-DDGGSPIRHYLVRYRA-LSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFV  197 (209)
T ss_dssp             C-CCTTSCCCEEEEEEEE-TTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEE
T ss_pred             c-ccCCCCCceEEEEEEC-CCCCCceeeecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchhh
Confidence            8 4566799999999998 44556432  23345789999999999999999999999999998764

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.75  E-value=1e-16  Score=139.88  Aligned_cols=184  Identities=13%  Similarity=0.094  Sum_probs=126.9

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceE-EEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH-IFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+....... .........|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~   83 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV   83 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence            4677766554 56889999999999975 467899999887543110000 00011234799999999999999999987


Q ss_pred             CCc-----ceeeeeEEEEecC---CcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEe-c
Q psy12425        370 KGG-----VKSTKAELIIMTA---PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET-S  440 (591)
Q Consensus       370 ~~g-----~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~  440 (591)
                      ..+     ..+....|.|...   |.+...+.    ..+.+|+.++|.|.+.+.+ +.+.|+|+|..+.......... .
T Consensus        84 ~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~----~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~  158 (257)
T 1b6u_A           84 THSPYQLSAPSDPLDIVITGLYEKPSLSAQPG----PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNG  158 (257)
T ss_dssp             SSCTTSCCCCCCCEEEEEECSSCCCEEECSSC----TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSS
T ss_pred             cCCCccccccCCCEEEecccCCCCcceEccCC----CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCC
Confidence            532     1244567777653   34433332    2468899999999998764 7999999998765433222111 1


Q ss_pred             CCeeEEEEeccCCCcceeEEEEEEcCCC-----ccceEEEEEecCCCC
Q psy12425        441 ERHAILTIRDASNVDTAPYRVVAENDLG-----MDSAIVKIQISDRPD  483 (591)
Q Consensus       441 ~~~~~l~i~~~~~~~~g~y~c~a~n~~g-----~~~~~~~~~v~~~p~  483 (591)
                      .....|.|.+++  |+|.|+|.|.|..+     ..+..+.|.|..+|.
T Consensus       159 ~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~  204 (257)
T 1b6u_A          159 TFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS  204 (257)
T ss_dssp             CCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred             ceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence            246889999998  99999999997632     235677888887664

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.75  E-value=3.8e-17  Score=140.32  Aligned_cols=167  Identities=13%  Similarity=0.189  Sum_probs=116.1

Q ss_pred             ccccceeccccEEEEEEEcCC-------CCCeeEEecCCccC-----------------CCCCceEEEEe--CCeEEEEE
Q psy12425        299 LRNANAIQNHNAQFQCTITGC-------PKPTISWLKGSREI-----------------TPSARHHIFAE--GDTYTLII  352 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~-------p~~~v~W~~~~~~~-----------------~~~~~~~~~~~--~~~~~l~i  352 (591)
                      +..+.+.+|+.+.|.|.+.+.       +.+.+.|++++...                 ....++.+..+  ....+|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            345678899999999999754       57789999975421                 11134443321  23457999


Q ss_pred             cceecccceEEEEEEEeCCcce----eeeeEEEEecCC---cccCCCCcccceeecCCCeEEEEEeeecc----CCCeEE
Q psy12425        353 NSVYGVDADEYVCRAVNKGGVK----STKAELIIMTAP---KFNVPPRFRDTAYFDKGENVVVKIPFTGY----PKPKIT  421 (591)
Q Consensus       353 ~~~~~~d~g~y~c~a~n~~g~~----~~~~~l~v~~~p---~~~~~~~~~~~~~~~~g~~~~l~c~~~~~----p~~~v~  421 (591)
                      .+++.+|+|.|.|.+.+..+..    ...+.|.|...+   .+..+      ..+.+|+.+.|.|.+.+.    |.|.+.
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~------~~~~~G~~v~L~C~~~~~~~~~p~p~v~  160 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL------EPLESGRPTRLSCSLPGSCEAGPPLTFS  160 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--------CCCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred             ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC------ccccCCCeEEEEEEeccCCCCCCCceEE
Confidence            9999999999999999976432    246778887643   33221      125689999999999774    889999


Q ss_pred             EeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        422 WYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       422 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      |++++...... .     ......|.|..+..+|.|.|+|.|.|..+..+....+.
T Consensus       161 W~~~~~~~~~~-~-----~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          161 WTGNALSPLDP-E-----TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             EESSTTSSSCS-S-----CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             EeCCCCccCCC-C-----ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence            99998653211 1     13567899999999999999999999876554444433

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.74  E-value=4.6e-17  Score=143.62  Aligned_cols=172  Identities=18%  Similarity=0.275  Sum_probs=118.6

Q ss_pred             eEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCc--cC-------------CCCCceEEE--EeCCeEEEEEccee
Q psy12425        294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--EI-------------TPSARHHIF--AEGDTYTLIINSVY  356 (591)
Q Consensus       294 ~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~-------------~~~~~~~~~--~~~~~~~l~i~~~~  356 (591)
                      .+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++...  ..             ....++.+.  ......+|.|.+++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            34444556778999999999999999999999988321  10             012234442  23456789999999


Q ss_pred             cccceEEEEEEEeCCcce----eeeeEEEEec--------------------CCcccCCCCcccceeecCCCeEEEEEee
Q psy12425        357 GVDADEYVCRAVNKGGVK----STKAELIIMT--------------------APKFNVPPRFRDTAYFDKGENVVVKIPF  412 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~~----~~~~~l~v~~--------------------~p~~~~~~~~~~~~~~~~g~~~~l~c~~  412 (591)
                      .+|+|.|+|.+.|..+..    .....|.|..                    +|.+...+   ....+..|+.++|.|.+
T Consensus        85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p---~~~~v~~G~~v~L~C~~  161 (256)
T 3tf7_C           85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSP---RNKVTVTGENVTLSCRQ  161 (256)
T ss_dssp             GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESC---SEEEEETTCCEEECEEE
T ss_pred             cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecC---CEEEEeCCCcEEEEEEc
Confidence            999999999999976522    2345666664                    22333222   23456789999999999


Q ss_pred             eccCCCeEEEeeCC--eEee---------------eccceEEEe-cCCeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        413 TGYPKPKITWYRDN--EVIE---------------SGGHFHVET-SERHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       413 ~~~p~~~v~W~~~~--~~~~---------------~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      .+. .+.+.|++..  ....               ...++.+.. ......|+|.+++.+|+|.|.|.|.|..|.
T Consensus       162 ~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          162 TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            887 7899999832  1110               012222222 234568999999999999999999998764

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.74  E-value=4.8e-16  Score=132.03  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=73.0

Q ss_pred             CCCCCCCeeeeecCCeeEEEeecccc-CCCcceeeEEEEeeeCCCCc-eEEe--ceeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        482 PDPPQFPTVEDIGHDSLALVWRAPIW-DGGSNITNYIVEKREHPMSS-WIRV--GNTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       482 p~~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~~~~y~v~~~~~~~~~-~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      +.+|.++.+...+.+++.|+|++|.. +.++.+.+|.|+|+...... |...  .......+.|.+|.+++.|.|+|+|.
T Consensus       105 ~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~  184 (205)
T 1cfb_A          105 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAI  184 (205)
T ss_dssp             SCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             CCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCCCcEEEEecCCCccEEEEcCCCCCcEEEEEEEEE
Confidence            45677888888888999999998762 33447999999998876544 7654  23356899999999999999999999


Q ss_pred             cCCcCCCC-CCCcceEEecc
Q psy12425        558 NVYGRSDP-STTSDLITTYG  576 (591)
Q Consensus       558 n~~G~~~~-s~~~~~~~t~~  576 (591)
                      |..|.|+. |... .++|.+
T Consensus       185 n~~G~g~~ss~~v-~~~T~e  203 (205)
T 1cfb_A          185 NDRGESNVAAEEV-VGYSGE  203 (205)
T ss_dssp             ETTEECSSCCCCE-EEESSS
T ss_pred             cCCCcCCCCCCcE-EEecCC
Confidence            99999995 4543 445543

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.74  E-value=3e-17  Score=144.60  Aligned_cols=175  Identities=15%  Similarity=0.182  Sum_probs=121.4

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCC-----CCeeEEecCCc--cC------------CCCCceEEEEeCCeEEEEEc
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCP-----KPTISWLKGSR--EI------------TPSARHHIFAEGDTYTLIIN  353 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p-----~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~  353 (591)
                      +.+...+..+.+.+|+.+.|.|.+.+.+     .+.+.|++++.  ..            ....++.+...+...+|.|.
T Consensus        35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  114 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRIS  114 (252)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEEC
Confidence            3344445667789999999999999987     68999998542  11            11346666666777899999


Q ss_pred             ceecccceEEEEEEEeCCcce-eeeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEeeCCe
Q psy12425        354 SVYGVDADEYVCRAVNKGGVK-STKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWYRDNE  427 (591)
Q Consensus       354 ~~~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~~~  427 (591)
                      +++.+|+|.|+|.+.|..+.. .....+.|..   +|.+...+.   ...+..|+.+.|.|.+.+. |.+ .+.|+++|.
T Consensus       115 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  191 (252)
T 3bkj_L          115 RVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  191 (252)
T ss_dssp             SCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECC---CHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             CCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCC---ChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCe
Confidence            999999999999999876533 2334566654   233332111   1112368899999999984 543 799999998


Q ss_pred             EeeeccceE--EEecC-----CeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        428 VIESGGHFH--VETSE-----RHAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       428 ~~~~~~~~~--~~~~~-----~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      .+.......  .....     ....|.|..+..+|.|.|+|.|.|.....
T Consensus       192 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          192 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             EECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             ecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            875431111  11111     13568999999999999999999986543

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.74  E-value=2.4e-17  Score=138.09  Aligned_cols=159  Identities=16%  Similarity=0.216  Sum_probs=110.9

Q ss_pred             cccceeccccEEEEEEEcC-CCCCeeEEecCCccCC---CC---------------CceEEEEeCCeEEEEEcceecccc
Q psy12425        300 RNANAIQNHNAQFQCTITG-CPKPTISWLKGSREIT---PS---------------ARHHIFAEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~---~~---------------~~~~~~~~~~~~~l~i~~~~~~d~  360 (591)
                      ..+.+.+|+.+.|.|.+.+ .+.+.+.|++++..+.   ..               .+..+.   ...+|.|.+++.+|+
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~   82 (193)
T 2if7_A            6 LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKMEDT   82 (193)
T ss_dssp             EEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGGGC
T ss_pred             eEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcccC
Confidence            4456789999999999875 4557999999865331   00               122222   234799999999999


Q ss_pred             eEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCC-eEEEEEeeecc-CCCeEEEeeCCeEeeeccceEEE
Q psy12425        361 DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGE-NVVVKIPFTGY-PKPKITWYRDNEVIESGGHFHVE  438 (591)
Q Consensus       361 g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~-~~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~  438 (591)
                      |.|+|.+.|..|.....+.|.|..++..+.-.  ........|. .+.|.|.+.+. |.|.+.|+++|..+..       
T Consensus        83 G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~--~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~-------  153 (193)
T 2if7_A           83 GSYRAQISTKTSAKLSSYTLRILRQLRNIQVT--NHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS-------  153 (193)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCEEEEEE--ECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES-------
T ss_pred             ceEEEEEEecCCCeEEEEEEEEEccCCCCeEe--cCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC-------
Confidence            99999999998877667788887654321000  0001123455 89999999985 5899999999876532       


Q ss_pred             ecCCeeEEEEeccCCC-cceeEEEEEEcCCCccceEE
Q psy12425        439 TSERHAILTIRDASNV-DTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       439 ~~~~~~~l~i~~~~~~-~~g~y~c~a~n~~g~~~~~~  474 (591)
                          ...|.|.....+ |.|.|+|.|.|..|..+..+
T Consensus       154 ----~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~  186 (193)
T 2if7_A          154 ----QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSV  186 (193)
T ss_dssp             ----SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred             ----CCeEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence                234556443444 89999999999999875543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.74  E-value=5.2e-17  Score=134.26  Aligned_cols=76  Identities=12%  Similarity=0.184  Sum_probs=59.5

Q ss_pred             eeccccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcc-eeeeeEEE
Q psy12425        304 AIQNHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV-KSTKAELI  381 (591)
Q Consensus       304 ~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~-~~~~~~l~  381 (591)
                      +.+|+.+.|.|.+ .+.|.+.+.|++++..+....        ....|.|.++..+|+|.|+|.|.|..+. .+..+.|.
T Consensus        97 ~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~  168 (176)
T 1f2q_A           97 VMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT  168 (176)
T ss_dssp             EETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             eeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec--------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEE
Confidence            5678889999999 467778999999988774321        1237999999999999999999997444 45567888


Q ss_pred             EecCCc
Q psy12425        382 IMTAPK  387 (591)
Q Consensus       382 v~~~p~  387 (591)
                      |..+|.
T Consensus       169 V~~~p~  174 (176)
T 1f2q_A          169 VIKAPR  174 (176)
T ss_dssp             EECSCC
T ss_pred             EecCCC
Confidence            887764

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.74  E-value=1.2e-17  Score=141.73  Aligned_cols=171  Identities=12%  Similarity=0.184  Sum_probs=116.6

Q ss_pred             ccceeccccEEEEEEEcC----CCCCeeEEecCCccCCC------------CCceEEEEeCCeEEEEEcceecccceEEE
Q psy12425        301 NANAIQNHNAQFQCTITG----CPKPTISWLKGSREITP------------SARHHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~----~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      .+.+..|+.+.|.|.+.+    .|.+.+.|++++..+..            ..+..+ ...+..+|.|.+++.+|+|.|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~-~~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE-ccCCCcEEEEecccchhCeEEE
Confidence            355789999999999853    46688999998765420            011222 1123348999999999999999


Q ss_pred             EEEEeCCccee-----eeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeee-ccCCCeEEEeeCCeEeeeccceEEE
Q psy12425        365 CRAVNKGGVKS-----TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFT-GYPKPKITWYRDNEVIESGGHFHVE  438 (591)
Q Consensus       365 c~a~n~~g~~~-----~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~~~  438 (591)
                      |.|.|..|...     ....|.|..++.   .|.. .......|+.+.|.|.+. |.|.|.|.|+++|..+.........
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~~---~p~~-~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~  157 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADFP---TPSI-SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQ  157 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCCC---CCEE-EEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEE
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCCC---CCce-EeccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEe
Confidence            99999876553     356666665422   1111 111225588999999995 9999999999999888654332222


Q ss_pred             ecC-Ce-eEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        439 TSE-RH-AILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       439 ~~~-~~-~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      ... .. ....+..+...|.|.|+|.|.|..|..+..+.+
T Consensus       158 ~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          158 DPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             CTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             cCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            211 21 222345566789999999999999987766654

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.74  E-value=6e-17  Score=139.77  Aligned_cols=182  Identities=14%  Similarity=0.168  Sum_probs=118.7

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--ccCC-----------------CCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REIT-----------------PSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ....+.+|+.+.|.|.+.+.+  .+.+.|+++.  ....                 ...++.+..+  ++..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (227)
T 1mju_H            8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (227)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCC
Confidence            345678999999999999877  6889999853  2110                 0235555543  356799999999


Q ss_pred             cccceEEEEEEEeCCcce-eeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEeeCCeEe
Q psy12425        357 GVDADEYVCRAVNKGGVK-STKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWYRDNEVI  429 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~~-~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~~~~~  429 (591)
                      .+|+|.|.|.+.|..+.. .....|.|..    +|.+.....   ...+..|+.+.|.|.+.|. |.+ .+.|++++..+
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H           88 SDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAP---VCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECC---CC------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             cccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecC---CccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence            999999999999864322 2345677764    233221110   1134579999999999985 776 99999998764


Q ss_pred             eeccceEEEecC---CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCC
Q psy12425        430 ESGGHFHVETSE---RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP  485 (591)
Q Consensus       430 ~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p  485 (591)
                      .......+...+   ..+.|.|.....+| |.|+|.|.|..+.......+.+..+|.+|
T Consensus       165 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~~  222 (227)
T 1mju_H          165 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKP  222 (227)
T ss_dssp             TEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC----
T ss_pred             CcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCCC
Confidence            211100111111   24578998888888 99999999988777777777777777654

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.74  E-value=1e-16  Score=141.66  Aligned_cols=167  Identities=14%  Similarity=0.268  Sum_probs=117.5

Q ss_pred             ccceeccccEEEEEEEcCC--CCCeeEEecCCc--cC------------CCCCceEEEEeCCeEEEEEcceecccceEEE
Q psy12425        301 NANAIQNHNAQFQCTITGC--PKPTISWLKGSR--EI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      ...+.+|+.+.|.|.+.+.  +.+.+.|++...  ..            ....++.+...+...+|.|.+++.+|+|.|+
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~   90 (256)
T 3ux9_B           11 SVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYY   90 (256)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             cEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEE
Confidence            3567899999999999887  788999998421  11            1234666666777789999999999999999


Q ss_pred             EEEEeCCcc---eeeeeEEEEecCCcccC---------------CCC--cccceeecCCCeEEEEEeeeccC--CCeEEE
Q psy12425        365 CRAVNKGGV---KSTKAELIIMTAPKFNV---------------PPR--FRDTAYFDKGENVVVKIPFTGYP--KPKITW  422 (591)
Q Consensus       365 c~a~n~~g~---~~~~~~l~v~~~p~~~~---------------~~~--~~~~~~~~~g~~~~l~c~~~~~p--~~~v~W  422 (591)
                      |.+.|..+.   ......|.|..++....               .+.  ......+.+|+.+.|.|.+.+.+  .+.+.|
T Consensus        91 C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W  170 (256)
T 3ux9_B           91 CQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSW  170 (256)
T ss_dssp             EEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEE
T ss_pred             EEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEEE
Confidence            999997553   23446777776542110               000  01123478899999999999877  789999


Q ss_pred             eeC--CeEee-----------------eccceEEEec--CCeeEEEEeccCCCcceeEEEEEEcCC
Q psy12425        423 YRD--NEVIE-----------------SGGHFHVETS--ERHAILTIRDASNVDTAPYRVVAENDL  467 (591)
Q Consensus       423 ~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~a~n~~  467 (591)
                      +++  +..+.                 ...++.+...  .....|+|.+++.+|+|.|.|.|.|..
T Consensus       171 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          171 VRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            986  32221                 1124444433  346679999999999999999999964

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.74  E-value=1e-16  Score=138.21  Aligned_cols=173  Identities=15%  Similarity=0.220  Sum_probs=118.5

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--ccC-------------------CCCCceEEEEe--CCeEEEEEcc
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REI-------------------TPSARHHIFAE--GDTYTLIINS  354 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~-------------------~~~~~~~~~~~--~~~~~l~i~~  354 (591)
                      ....+.+|+.+.|.|.+.+.+  .+.+.|+++.  ...                   ....++.+..+  ....+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            345688999999999999865  6789998843  110                   01235555543  3467899999


Q ss_pred             eecccceEEEEEEEeCCc-----ceeeeeEEEEecC----CcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEe
Q psy12425        355 VYGVDADEYVCRAVNKGG-----VKSTKAELIIMTA----PKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWY  423 (591)
Q Consensus       355 ~~~~d~g~y~c~a~n~~g-----~~~~~~~l~v~~~----p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~  423 (591)
                      ++..|+|.|.|.+.|..|     .......|.|...    |.+...+.   ...+..|+.+.|.|.+.|. |.| .+.|+
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  164 (222)
T 1q9r_B           88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAP---GSAAQTNSMVTLGCLVKGYFPEPVTVTWN  164 (222)
T ss_dssp             CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECC---CSCCCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccc---cccccCCCcEEEEEEEccEECCCCEEEEe
Confidence            999999999999999765     2223456777642    33221111   1124579999999999986 888 99999


Q ss_pred             eCCeEeeeccceEEEecC---CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        424 RDNEVIESGGHFHVETSE---RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      ++|..+...........+   ..+.|.|..+...| |.|+|.|.|..|.......+
T Consensus       165 ~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          165 SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             GGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             cCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence            998765321111111111   13568999999889 99999999999876544433

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.74  E-value=3.6e-18  Score=144.22  Aligned_cols=153  Identities=14%  Similarity=0.242  Sum_probs=108.3

Q ss_pred             eeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      +.+|+.+.|.|.+   |.+.+.|++++..+...       .....+|.|.+++.+|+|.|+|.+.+..   +....+.+.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~v~v~   81 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNK---SKPLQVYYR   81 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSC---CCCEEEEEE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCC---CeeEEEEEE
Confidence            4689999999998   78899999998765421       1223379999999999999999975422   222444444


Q ss_pred             c-------------------------------CCcccCCCCcccceeec-CCCeEEEEEeeeccCCCeEEEeeCCeEeee
Q psy12425        384 T-------------------------------APKFNVPPRFRDTAYFD-KGENVVVKIPFTGYPKPKITWYRDNEVIES  431 (591)
Q Consensus       384 ~-------------------------------~p~~~~~~~~~~~~~~~-~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~  431 (591)
                      .                               ++.+...     ...+. +|+.+.|.|.  +.|.|.+.|++++..+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~  154 (204)
T 1sy6_A           82 MGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT-----PYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGG  154 (204)
T ss_dssp             C------------------------------------CC-----CCEEEEETTEEEEECS--CCCSSCEEEEETTEEESC
T ss_pred             EeccccccccccccccccccccccccccccccccceecC-----CceeeecCCcEEEEcC--CCCCCceEEEECCEECCC
Confidence            1                               1111111     11233 8999999999  889999999999988754


Q ss_pred             cc-ceEEEecCCeeEEEEecc-CCCcceeEEEEEEcCCCcc-ceEEEEEe
Q psy12425        432 GG-HFHVETSERHAILTIRDA-SNVDTAPYRVVAENDLGMD-SAIVKIQI  478 (591)
Q Consensus       432 ~~-~~~~~~~~~~~~l~i~~~-~~~~~g~y~c~a~n~~g~~-~~~~~~~v  478 (591)
                      .. ...+..  ....|.|.++ ...|+|.|+|.|.|..|.. +..+.|.+
T Consensus       155 ~~~~~~~~~--~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          155 DEDDKNIGS--DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             CTTCTTEEE--ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             ccCCceEec--CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            32 111221  2678999999 9999999999999999974 55555554

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.73  E-value=2.6e-16  Score=139.13  Aligned_cols=173  Identities=17%  Similarity=0.239  Sum_probs=123.8

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCC------CCeeEEecCC--ccC------------CCCCceEEEEeCCeEEEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCP------KPTISWLKGS--REI------------TPSARHHIFAEGDTYTLI  351 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p------~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~  351 (591)
                      .+.+...+..+.+.+|+.+.|.|.+.+.+      .+.+.|++..  ...            ....++.+...+...+|.
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            34555566677889999999999999887      6889999842  211            013466666666678999


Q ss_pred             EcceecccceEEEEEEEeCCcce-eeeeEEEEecCCc------------------ccCCCCcccceeecCCCeEEEEEee
Q psy12425        352 INSVYGVDADEYVCRAVNKGGVK-STKAELIIMTAPK------------------FNVPPRFRDTAYFDKGENVVVKIPF  412 (591)
Q Consensus       352 i~~~~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~------------------~~~~~~~~~~~~~~~g~~~~l~c~~  412 (591)
                      |.+++.+|+|.|.|.+.|..+.. .....|.|..+|.                  +....  .....+..|+.+.|.|.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~G~~v~L~C~~  162 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQ--SGPEVVKTGASVKISCKA  162 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEE--CCCEEECTTCCEEEEEEE
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeC--CCCEEEcCCCcEEEEEEE
Confidence            99999999999999999876532 3346777876541                  11100  112357899999999999


Q ss_pred             eccCC--CeEEEeeCC--eE---eee--------------ccceEEEe--cCCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        413 TGYPK--PKITWYRDN--EV---IES--------------GGHFHVET--SERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       413 ~~~p~--~~v~W~~~~--~~---~~~--------------~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                      .+.+.  +.+.|+++.  ..   +..              ..++.+..  ......|+|.+++.+|+|.|.|.|.|.
T Consensus       163 ~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          163 SGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             ESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             eCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            98874  799999863  21   110              22344432  235679999999999999999999996

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.73  E-value=2.3e-17  Score=121.89  Aligned_cols=96  Identities=27%  Similarity=0.539  Sum_probs=88.8

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .||.|...+.++.+.+|+.+.|.|.+.|.|.|.|.|++++..+..+.++.+..++..++|.|.++..+|+|.|+|.|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            57889988899999999999999999999999999999999999888999888888999999999999999999999999


Q ss_pred             CcceeeeeEEEEecCC
Q psy12425        371 GGVKSTKAELIIMTAP  386 (591)
Q Consensus       371 ~g~~~~~~~l~v~~~p  386 (591)
                      .|.....+.|.|..+|
T Consensus        92 ~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           92 AGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             TEEEEEEEEEEEEC--
T ss_pred             CCEEEEEEEEEEEcCC
Confidence            9999999999998765

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.73  E-value=1.1e-16  Score=140.73  Aligned_cols=175  Identities=14%  Similarity=0.141  Sum_probs=116.1

Q ss_pred             cccceeccccEEEEEEEcCCCCCe-----eEEecCCccCCCCC--------ce-------EEE---EeCCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPT-----ISWLKGSREITPSA--------RH-------HIF---AEGDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~-----v~W~~~~~~~~~~~--------~~-------~~~---~~~~~~~l~i~~~~  356 (591)
                      ..+.+..|+.+.|.|.+.+.|.+.     +.|++++.......        ..       .+.   ......+|.|.+++
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~   90 (248)
T 3pv7_A           11 GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQ   90 (248)
T ss_dssp             SEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCC
T ss_pred             CCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCC
Confidence            345678999999999998887765     99998643322100        00       000   01123359999999


Q ss_pred             cccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeec-cCCC-eEEEeeCCeEeeecc-
Q psy12425        357 GVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKP-KITWYRDNEVIESGG-  433 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~-~v~W~~~~~~~~~~~-  433 (591)
                      ..|+|.|+|.+.|..+.......|.|..+|.+...+.    ..+..|..+.|.|.+.| .|.+ .+.|+++|..+.... 
T Consensus        91 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~----~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~  166 (248)
T 3pv7_A           91 LEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD----QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE  166 (248)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC------------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred             HHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecC----CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence            9999999999999988888888999998887654432    22345778889999998 7988 999999986432110 


Q ss_pred             -----c-eEEEecC-----CeeEEEEeccCCCcceeEEEEEEcCCCccce--EEEEEe
Q psy12425        434 -----H-FHVETSE-----RHAILTIRDASNVDTAPYRVVAENDLGMDSA--IVKIQI  478 (591)
Q Consensus       434 -----~-~~~~~~~-----~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~--~~~~~v  478 (591)
                           . .......     ....|.|.....+|.|.|+|.|.|..+....  .+.|.|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence                 0 0111111     1356888888899999999999999987544  444555

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.73  E-value=3.3e-16  Score=152.83  Aligned_cols=97  Identities=31%  Similarity=0.567  Sum_probs=85.2

Q ss_pred             EecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEE
Q psy12425         85 ITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVM  164 (591)
Q Consensus        85 v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~  164 (591)
                      ....|.+|..| .+.++..++++|+|.+|.+++|.+|++|.|+++..+...|..+.. ...+.+++.+|.++..|.|||+
T Consensus         6 ~~~~P~pP~~P-~v~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~~W~~v~~-~~~t~~~V~~L~~g~~Y~FRV~   83 (573)
T 3uto_A            6 DVPEPEPPRFP-IIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAK-SRYTYTTIEGLRAGKQYEFRII   83 (573)
T ss_dssp             --CCCCCCEEE-EEEEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSCCCEEEEE-ESSSEEEECCCCTTCEEEEEEE
T ss_pred             cCCCCccCCCC-EEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEecc-ccCCEEEeCCCCCCCcEeEEEE
Confidence            34468888775 788999999999999999999999999999999999999999875 4778999999999999999999


Q ss_pred             EEccCCCCCCCCccCcccc
Q psy12425        165 AVNENGMGPPLEGINPIKA  183 (591)
Q Consensus       165 a~n~~g~~~~~~~~~~~~~  183 (591)
                      |.|..|.+.++..+..+..
T Consensus        84 A~N~~G~s~PS~~s~~v~~  102 (573)
T 3uto_A           84 AENKHGQSKPCEPTAPVLI  102 (573)
T ss_dssp             EEETTEECCCCCCCCCEEC
T ss_pred             EEcCceEcCCcCCCCCEEc
Confidence            9999999999877666554

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.73  E-value=1.4e-15  Score=148.53  Aligned_cols=95  Identities=35%  Similarity=0.629  Sum_probs=86.5

Q ss_pred             CCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEc
Q psy12425        189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN  268 (591)
Q Consensus       189 ~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n  268 (591)
                      .|.+|..+.+.....++++|+|.+|..+++++|++|.|+++..+...|..+...  ....+++.+|.++..|.|||+|.|
T Consensus         9 ~P~pP~~P~v~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~~W~~v~~~--~~t~~~V~~L~~g~~Y~FRV~A~N   86 (573)
T 3uto_A            9 EPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS--RYTYTTIEGLRAGKQYEFRIIAEN   86 (573)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSCCCEEEEEE--SSSEEEECCCCTTCEEEEEEEEEE
T ss_pred             CCccCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeccc--cCCEEEeCCCCCCCcEeEEEEEEc
Confidence            688889999999999999999999999999999999999999999999998753  568899999999999999999999


Q ss_pred             CCCCCCCCCCcceEEEc
Q psy12425        269 EAGLSLPSSASNSVQIK  285 (591)
Q Consensus       269 ~~g~~~~s~~~~~~~~~  285 (591)
                      ..|.+.++..+..+.+.
T Consensus        87 ~~G~s~PS~~s~~v~~~  103 (573)
T 3uto_A           87 KHGQSKPCEPTAPVLIP  103 (573)
T ss_dssp             TTEECCCCCCCCCEECC
T ss_pred             CceEcCCcCCCCCEEcC
Confidence            99999988877777654

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.73  E-value=4.8e-17  Score=142.90  Aligned_cols=175  Identities=13%  Similarity=0.195  Sum_probs=119.7

Q ss_pred             EEeeccccceeccccEEEEEEEcCCCCCeeEEec----------------CCccCCCC---CceEEEE-eCCeEEEEEcc
Q psy12425        295 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK----------------GSREITPS---ARHHIFA-EGDTYTLIINS  354 (591)
Q Consensus       295 ~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~----------------~~~~~~~~---~~~~~~~-~~~~~~l~i~~  354 (591)
                      +...+..+.+.+|+.+.|.|.+.+.+.+.+.|++                ++......   .++.+.. .....+|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   83 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS   83 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence            3444556778999999999999999999999998                22212111   3555543 34567999999


Q ss_pred             eecccceEEEEEEEeCCcc----eeeeeEEEEec------CCcccCCCCcccceeecCCCeEEEEEeeeccCCC--eEEE
Q psy12425        355 VYGVDADEYVCRAVNKGGV----KSTKAELIIMT------APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP--KITW  422 (591)
Q Consensus       355 ~~~~d~g~y~c~a~n~~g~----~~~~~~l~v~~------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~--~v~W  422 (591)
                      ++.+|+|.|.|.+.|..+.    ......|.|..      +|.+....  .....+..|+.+.|.|.+.|.|++  .+.|
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~--~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  161 (246)
T 4dzb_B           84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFE--PSEAEISHTQKATLVCLATGFYPDHVELSW  161 (246)
T ss_dssp             CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEEC--CCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeec--CCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence            9999999999999986542    23445677764      23222111  011224569999999999987665  8999


Q ss_pred             eeCCeEeeeccceEEEe-------cCC----eeEEEEeccCCCc-ceeEEEEEEcCCCccc
Q psy12425        423 YRDNEVIESGGHFHVET-------SER----HAILTIRDASNVD-TAPYRVVAENDLGMDS  471 (591)
Q Consensus       423 ~~~~~~~~~~~~~~~~~-------~~~----~~~l~i~~~~~~~-~g~y~c~a~n~~g~~~  471 (591)
                      +++|..+..........       .+.    ...|.|.....+| .|.|+|.|.|......
T Consensus       162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            99998886432221100       011    2447888887777 9999999999876654

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.72  E-value=3.9e-17  Score=134.02  Aligned_cols=154  Identities=16%  Similarity=0.229  Sum_probs=111.1

Q ss_pred             ccceeccccEEEEEEEc--CCCCCeeEEec--CCccC----------CCCCceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425        301 NANAIQNHNAQFQCTIT--GCPKPTISWLK--GSREI----------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~--~~p~~~v~W~~--~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      .+....|+++.|.|...  +.+.+.|.|++  ++..+          ....++.+..++   +|.|.+++.+|+|.|+|.
T Consensus         8 ~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~Y~c~   84 (182)
T 1hnf_A            8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYKVS   84 (182)
T ss_dssp             EEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEEEE
T ss_pred             EEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEEEEEE
Confidence            35578899999999542  34567899999  77655          234566665444   799999999999999999


Q ss_pred             EEeCCccee--eeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCee
Q psy12425        367 AVNKGGVKS--TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA  444 (591)
Q Consensus       367 a~n~~g~~~--~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  444 (591)
                      |.|..|...  ..+.|.|..+..   .|.    .. ..+..+.|.|.+.+.|.+.+.|+++|..+ ...         ..
T Consensus        85 ~~n~~g~~~~~~~~~L~V~~~~~---~P~----i~-~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~---------~~  146 (182)
T 1hnf_A           85 IYDTKGKNVLEKIFDLKIQERVS---KPK----IS-WTCINTTLTCEVMNGTDPELNLYQDGKHL-KLS---------QR  146 (182)
T ss_dssp             EEETTSCEEEEEEEEEEEECCCC---CCE----EE-EETTTTEEEEECSSCSSCEEEEEESSCEE-EEE---------SS
T ss_pred             EEeCCCceeEEEEEEEEEcCcCC---CCE----EE-EccCcEEEEeEccCCCCCEEEEEECCEEC-CCC---------Cc
Confidence            999888763  456677765321   111    11 12346899999999999999999999877 211         12


Q ss_pred             EEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       445 ~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      .+.+.. ...|.|.|+|.|.|..|..+....+
T Consensus       147 ~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          147 VITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             EEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            233332 4789999999999999987766555

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.72  E-value=4.6e-17  Score=141.89  Aligned_cols=172  Identities=12%  Similarity=0.184  Sum_probs=118.5

Q ss_pred             ccccceeccccEEEEEEEcCCCC-C-eeEEecCC--ccC------------CCCCceEEEEeCCeEEEEEcceecccceE
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPK-P-TISWLKGS--REI------------TPSARHHIFAEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~-~-~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  362 (591)
                      +....+.+|+.+.|.|.+.+.+. + .+.|+++.  ...            ....++.+...+...+|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            45667899999999999988543 4 79998853  211            11245666566677799999999999999


Q ss_pred             EEEEEEeCCcc---eeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeeccCC--CeEEEeeCCeEeeecc
Q psy12425        363 YVCRAVNKGGV---KSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK--PKITWYRDNEVIESGG  433 (591)
Q Consensus       363 y~c~a~n~~g~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~  433 (591)
                      |+|.|.|..+.   ......+.|..    +|.+...+   .......|+.+.|.|.+.|.++  +.+.|+++|..+..+.
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~---~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~  182 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFP---PSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGV  182 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEEC---CCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSE
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccC---CChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCc
Confidence            99999998872   23345555633    23322111   1112235889999999998644  3899999999875432


Q ss_pred             ceE-EEe-c----CCeeEEEEeccCCCcceeEEEEEEcCCCccceE
Q psy12425        434 HFH-VET-S----ERHAILTIRDASNVDTAPYRVVAENDLGMDSAI  473 (591)
Q Consensus       434 ~~~-~~~-~----~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~  473 (591)
                      ... ... .    .....|.|.....+|.|.|+|.|.|..+....+
T Consensus       183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  228 (234)
T 2j6e_L          183 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  228 (234)
T ss_dssp             EECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred             cccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence            111 011 1    123578999999999999999999997764443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.72  E-value=1.1e-16  Score=138.92  Aligned_cols=174  Identities=11%  Similarity=0.141  Sum_probs=116.6

Q ss_pred             ccceeccccEEEEEEEcCCCCCe---eEEecCCccCC----------------CCCceEEE-------EeCCeEEEEEcc
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPT---ISWLKGSREIT----------------PSARHHIF-------AEGDTYTLIINS  354 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~---v~W~~~~~~~~----------------~~~~~~~~-------~~~~~~~l~i~~  354 (591)
                      ++.+..|+.+.|.|.+.+.+.+.   |.|+|++..+.                ...+....       ......+|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            35578899999999999877764   88999764321                00111111       112234799999


Q ss_pred             eecccceEEEEEEEeCCcceee-eeEEEEecCCcccCCCCcccceeecCCCeEEEEEee-eccCCCeEEEeeCCeEeeec
Q psy12425        355 VYGVDADEYVCRAVNKGGVKST-KAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVIESG  432 (591)
Q Consensus       355 ~~~~d~g~y~c~a~n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~  432 (591)
                      ++.+|+|.|+|.|.|..|.... ...+.+..+|.....+   .......+..+.+.|.+ .+.|++.+.|++++..+...
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~  166 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEA---QEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKD  166 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEE---CCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEE
T ss_pred             CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecc---cceeecceeeeeeeeeecCCCCCCEEEEEECCccccCC
Confidence            9999999999999998776544 3445555555443222   12233456666666665 57889999999988766543


Q ss_pred             cceEEEecCC---eeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        433 GHFHVETSER---HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       433 ~~~~~~~~~~---~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      ........+.   .+.|.|..+..+|+|.|+|.|.|..|.......+.
T Consensus       167 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~  214 (225)
T 4fmk_A          167 TQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVT  214 (225)
T ss_dssp             EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred             cceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEE
Confidence            3332222222   35799999999999999999999998875554443

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.72  E-value=1.1e-16  Score=136.69  Aligned_cols=169  Identities=15%  Similarity=0.213  Sum_probs=115.2

Q ss_pred             ccccceeccccEEEEEEEcCCC--CCeeEEecCC--ccCC----------------CCCceEEEEe--CCeEEEEEccee
Q psy12425        299 LRNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REIT----------------PSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~~----------------~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      +....+.+|+.+.|.|.+.+.+  .+.+.|+++.  ....                ...++.+..+  +...+|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            3456788999999999999875  4889998852  2110                1245555543  345689999999


Q ss_pred             cccceEEEEEEEeCCcceeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEeeCCeEee
Q psy12425        357 GVDADEYVCRAVNKGGVKSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWYRDNEVIE  430 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~~~~~~  430 (591)
                      .+|+|.|.|.+.|.. .......|.|..    +|.+...+   ....+..|+.+.|.|.+.|. |.| .+.|++++..+.
T Consensus        87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~---~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~  162 (210)
T 3d9a_H           87 TEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLA---PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG  162 (210)
T ss_dssp             GGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEEC---CTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred             cccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEec---CCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccc
Confidence            999999999999864 222335666653    23322111   11234679999999999987 888 999999987542


Q ss_pred             eccceEEEecC---CeeEEEEeccCCCcceeEEEEEEcCCCccce
Q psy12425        431 SGGHFHVETSE---RHAILTIRDASNVDTAPYRVVAENDLGMDSA  472 (591)
Q Consensus       431 ~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~  472 (591)
                      ......+...+   ....|.|.....++ |.|+|.|.|..|....
T Consensus       163 ~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          163 VHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             EEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             eEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            11111111111   24568999988877 9999999999887543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.72  E-value=1.3e-16  Score=133.05  Aligned_cols=74  Identities=12%  Similarity=0.193  Sum_probs=62.0

Q ss_pred             eeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      +.+|+.+.|.|.+.+.|.+.+.|++++..+       ....   ..|.|.++..+|+|.|+|.|.|..+.....+.|.|.
T Consensus       109 v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~-------~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~  178 (184)
T 2ny1_B          109 LLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGG---KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL  178 (184)
T ss_dssp             EETTCCEEEEEECCTTCCCEEEEECTTSCE-------EEES---SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eecCCCEEEEEEcCCCCCCEEEEEeCCCcc-------ccCc---eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEE
Confidence            467888999999999999999999986554       1122   279999999999999999999999988888999888


Q ss_pred             cCCc
Q psy12425        384 TAPK  387 (591)
Q Consensus       384 ~~p~  387 (591)
                      ..|.
T Consensus       179 ~~p~  182 (184)
T 2ny1_B          179 AFQK  182 (184)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            7654

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.72  E-value=1.1e-15  Score=126.27  Aligned_cols=158  Identities=12%  Similarity=0.152  Sum_probs=114.9

Q ss_pred             cceeccccEEEEEEEcCCCCC--eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeE
Q psy12425        302 ANAIQNHNAQFQCTITGCPKP--TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE  379 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~  379 (591)
                      +.+..|+++.|.|.+ +.|.|  .|.|++.+..+   .+..  .......|.|.+++.+|+|.|.|.|.|..|.....+.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~--~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~   90 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQ--SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ   90 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEE--EESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEE--ecCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence            578899999999999 88888  99999865444   2222  2345568999999999999999999999988888899


Q ss_pred             EEEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CC----CeEEEeeCCeEeeeccceE--EE------ecCC----
Q psy12425        380 LIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK----PKITWYRDNEVIESGGHFH--VE------TSER----  442 (591)
Q Consensus       380 l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~----~~v~W~~~~~~~~~~~~~~--~~------~~~~----  442 (591)
                      |.|..+|.......    .....|+.+ |.|.+.+. |.    +++.|++++..+.......  +.      ..+.    
T Consensus        91 ltV~~~P~~~~i~~----~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  165 (210)
T 1gsm_A           91 LLVYAFPNQLTVSP----AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLF  165 (210)
T ss_dssp             EEEEBCCSEEEEES----SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCE
T ss_pred             EEEEecCCCcEEcc----ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEE
Confidence            99999887543111    134567778 99999985 64    4899999999985432111  10      0011    


Q ss_pred             --eeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        443 --HAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       443 --~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                        .+.+.+.....++.+.|+|.|.+..-..
T Consensus       166 ~vts~~~~~~~~~D~~~~~tC~a~~~L~~~  195 (210)
T 1gsm_A          166 RVTERWRLPPLGTPVPPALYCQATMRLPGL  195 (210)
T ss_dssp             EEEEEEECCCCCSSCCSEEEEEEEEEETTE
T ss_pred             EEEEEEeecCCcccCCceEEEEEEeeCCCC
Confidence              2334444666677789999999886443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.71  E-value=5e-16  Score=139.53  Aligned_cols=180  Identities=14%  Similarity=0.195  Sum_probs=121.4

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCCc--cCC-----------------CCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGSR--EIT-----------------PSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~~--~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|+++..  ...                 ...++.+..+  +...+|.|.+++
T Consensus        30 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  109 (291)
T 2gki_A           30 GPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLT  109 (291)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCC
T ss_pred             CcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCC
Confidence            456688999999999998876  57899998532  110                 0134444432  346789999999


Q ss_pred             cccceEEEEEEEeCC-cc----eeeeeEEEEecC----------------CcccCCCCcccceeecCCCeEEEEEeeecc
Q psy12425        357 GVDADEYVCRAVNKG-GV----KSTKAELIIMTA----------------PKFNVPPRFRDTAYFDKGENVVVKIPFTGY  415 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~-g~----~~~~~~l~v~~~----------------p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~  415 (591)
                      .+|+|.|.|.+.|.. |.    ......|.|..+                +.+...+   ....+.+|+.++|.|.+.+.
T Consensus       110 ~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p---~~~~v~~G~~v~L~C~~~~~  186 (291)
T 2gki_A          110 SEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSP---SSLAVSAGEKVTMSCKSSQS  186 (291)
T ss_dssp             GGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSC---SEEEEETTSCEEEEEEESSC
T ss_pred             HHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCC---CEEEEcCCCcEEEEEEcCCc
Confidence            999999999999875 21    122346666651                1121111   23467899999999999988


Q ss_pred             CCC------eEEEeeCC--eEe---ee---------ccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc-ceEE
Q psy12425        416 PKP------KITWYRDN--EVI---ES---------GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD-SAIV  474 (591)
Q Consensus       416 p~~------~v~W~~~~--~~~---~~---------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~~  474 (591)
                      +.+      .+.|++++  ...   ..         ..++.+........|+|.+++.+|+|.|.|.|.|..... ..-.
T Consensus       187 ~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt  266 (291)
T 2gki_A          187 LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGT  266 (291)
T ss_dssp             CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCE
Confidence            876      99999963  211   11         235555445567789999999999999999999854221 2233


Q ss_pred             EEEecCCC
Q psy12425        475 KIQISDRP  482 (591)
Q Consensus       475 ~~~v~~~p  482 (591)
                      .|.++..+
T Consensus       267 ~l~v~~~~  274 (291)
T 2gki_A          267 KLEIKHHH  274 (291)
T ss_dssp             EEEEECC-
T ss_pred             EEEEEeeE
Confidence            44554433

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.71  E-value=2.2e-17  Score=157.17  Aligned_cols=212  Identities=17%  Similarity=0.163  Sum_probs=148.5

Q ss_pred             ccCCCCceEEEEEEEcCCeeeEEE-EEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCC--
Q psy12425         57 EIRKEDAGDYTVNLSNSSGSVSGT-FTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM--  133 (591)
Q Consensus        57 ~~~~~d~g~Y~c~~~n~~g~~~~~-~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~--  133 (591)
                      +....+.|.|.|.+.|..+..... .......+|.+|.. + ...+...++.|+|.+|...++..+..|.|.+.....  
T Consensus       301 ~S~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~n-l-~~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~  378 (536)
T 3fl7_A          301 HTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHY-L-TAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPES  378 (536)
T ss_dssp             SEECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSC-E-EEECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-C
T ss_pred             CCCCCCCCccEEEEeccccccCCCccccccccCCCcccc-e-EEEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCC
Confidence            344667899999999998876443 33334557777776 3 345788899999999987778789999999986321  


Q ss_pred             CceEE---------EEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCC
Q psy12425        134 PHWIC---------ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGD  204 (591)
Q Consensus       134 ~~~~~---------~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  204 (591)
                      ..|..         .........+.+.+|.+++.|.|+|.|.|..|.+..+..+..+...+   .+.+|..+.......+
T Consensus       379 ~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T---~~~~Ps~~~~~~~s~t  455 (536)
T 3fl7_A          379 GECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSI---NQTEPPKVRLEGRSTT  455 (536)
T ss_dssp             CCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEEC---CSCCCCEEEEEECCC-
T ss_pred             CcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEee---cccCCCCCceeeccCC
Confidence            12211         11124577899999999999999999999888743322223333333   3344555555777888


Q ss_pred             eEEEEEecCCCCCCcceEEEEEEeeecCCC-ccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCC
Q psy12425        205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSD-AWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS  277 (591)
Q Consensus       205 ~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~  277 (591)
                      ++.|+|.+|... +..+.+|.|.++..+.. .+..   .......++|.+|.+++.|.|+++|.|..|.+..+.
T Consensus       456 SV~LsW~pP~~~-ng~I~~Y~V~y~~~~~~~~~~~---v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~  525 (536)
T 3fl7_A          456 SLSVSWSIPPPQ-QSRVWKYEVTYRKKGDSNSYNV---RRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSK  525 (536)
T ss_dssp             CCEEEEECCTTT-TTTCSEEEEEEEEC--CCCCEE---EEESSSEEECCSCCSSCEEEEEEEEECC---CEECC
T ss_pred             eEEEEEECCcCC-CCcccEEEEEEEECCCCceEEE---EcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCC
Confidence            999999998543 45789999999877554 2222   234568899999999999999999999999876553

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.71  E-value=2.4e-16  Score=136.85  Aligned_cols=181  Identities=23%  Similarity=0.291  Sum_probs=136.7

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVN  167 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n  167 (591)
                      ++.+|.. +.+......++.|+|.+|.   + .+.+|.+.+.......+...........+.+.+|.+++.|.|+|.|.|
T Consensus         5 p~~~P~~-l~~~~~~~~si~l~W~~p~---g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   79 (234)
T 3f7q_A            5 DLGAPQN-PNAKAAGSRKIHFNWLPPS---G-KPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYG   79 (234)
T ss_dssp             CCCCCEE-EEEEECSSSCEEEEEECCS---S-CCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCCCcc-eEEEEcCCCEEEEEEECCC---C-ccceEEEEEEECCCCccceEEEcCCccEEEECCCCCCCEEEEEEEEEe
Confidence            3445554 5667778889999999873   3 788999999876554433223345778899999999999999999999


Q ss_pred             cCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc-----cEEEEee
Q psy12425        168 ENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA-----WQRVNVA  242 (591)
Q Consensus       168 ~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~-----~~~~~~~  242 (591)
                      ..|.+..+..   +........|.+|..+.+.....+++.|+|.+|...+ ..+.+|.|.+...+...     |......
T Consensus        80 ~~G~g~~s~~---~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~  155 (234)
T 3f7q_A           80 AQGEGPYSSL---VSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETN-GEITAYEVCYGLVNDDNRPIGPMKKVLVD  155 (234)
T ss_dssp             TTEECCCCCC---EEEECCCCCCCCCCCCEEEECSSSCEEEECCCCSCCS-SCCCEEEEEEEEBCTTSCBSSCCEECCCS
T ss_pred             CCCcCCCCCe---EEEEcCCCCCCCCCccEEEEecCCEEEEEEcCCCCCC-CceeEEEEEEEECCCCCCccCcceEEEec
Confidence            9988776643   3344445577778888888889999999999986544 47899999998765433     2333222


Q ss_pred             ecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCC
Q psy12425        243 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS  277 (591)
Q Consensus       243 ~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~  277 (591)
                      ......+.|.+|.++..|.|+++|.|..|.+..+.
T Consensus       156 ~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  190 (234)
T 3f7q_A          156 NPKNRMLLIENLRESQPYRYTVKARNGAGWGPERE  190 (234)
T ss_dssp             CTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEE
T ss_pred             CCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcC
Confidence            33446899999999999999999999999876543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.71  E-value=4.1e-16  Score=139.20  Aligned_cols=181  Identities=15%  Similarity=0.173  Sum_probs=122.7

Q ss_pred             ccccceeccccEEEEEEEcCC--CCCeeEEecCCc--cCC-----------------CCCceEEEE--eCCeEEEEEcce
Q psy12425        299 LRNANAIQNHNAQFQCTITGC--PKPTISWLKGSR--EIT-----------------PSARHHIFA--EGDTYTLIINSV  355 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~~~--~~~-----------------~~~~~~~~~--~~~~~~l~i~~~  355 (591)
                      +..+.+.+|+.+.|.|.+.+.  +.+.+.|++...  ...                 ...++.+..  .+...+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            456778899999999999875  567899987421  110                 012455543  344578999999


Q ss_pred             ecccceEEEEEEEeC---------CcceeeeeEEEEec---------------CCcccCCCCcccceeecCCCeEEEEEe
Q psy12425        356 YGVDADEYVCRAVNK---------GGVKSTKAELIIMT---------------APKFNVPPRFRDTAYFDKGENVVVKIP  411 (591)
Q Consensus       356 ~~~d~g~y~c~a~n~---------~g~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~~~~g~~~~l~c~  411 (591)
                      +.+|+|.|.|.+.|.         .........|.|..               ++.+..++   . ..+.+|+.++|.|.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p---~-~~v~~G~~v~L~C~  162 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPP---S-VSKGLRQTATLTCT  162 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCS---E-EEECTTCCEEEEEE
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCC---c-EEEecCCCEEEEEE
Confidence            999999999999986         12223455677765               33333333   2 56789999999999


Q ss_pred             eec-cC-CCeEEEeeC--CeEee------------eccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCc---cce
Q psy12425        412 FTG-YP-KPKITWYRD--NEVIE------------SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM---DSA  472 (591)
Q Consensus       412 ~~~-~p-~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~---~~~  472 (591)
                      +.+ .+ .+.+.|++.  +....            ...++.+........|+|.+++.+|+|.|.|.+.|..+.   -..
T Consensus       163 ~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~  242 (280)
T 3fku_X          163 GNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGG  242 (280)
T ss_dssp             CCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBC
T ss_pred             ecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECC
Confidence            988 44 479999873  22221            124555555566778999999999999999999997632   133


Q ss_pred             EEEEEecCCCC
Q psy12425        473 IVKIQISDRPD  483 (591)
Q Consensus       473 ~~~~~v~~~p~  483 (591)
                      ...|.|...|.
T Consensus       243 ~t~l~V~~~~~  253 (280)
T 3fku_X          243 GTKLTVLGQPK  253 (280)
T ss_dssp             CCEEEEC----
T ss_pred             CEEEEECCCCC
Confidence            44566655443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.71  E-value=2.3e-16  Score=135.18  Aligned_cols=73  Identities=18%  Similarity=0.165  Sum_probs=59.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECC--EEe----------e--cCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--RVV----------Q--SDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--~~~----------~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|+++.|.|.+.+.|.+.|.|+|++  ..+          .  ...++.+...+...+|.|.+++.+|+|.|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence            67899999999999999999988999999853  211          1  125666666667789999999999999999


Q ss_pred             EEEEcCC
Q psy12425         68 VNLSNSS   74 (591)
Q Consensus        68 c~~~n~~   74 (591)
                      |.+.|..
T Consensus        88 C~~~~~~   94 (213)
T 3d9a_L           88 CQQSNSW   94 (213)
T ss_dssp             EEECSSS
T ss_pred             EeeecCC
Confidence            9997653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.71  E-value=4.1e-17  Score=151.11  Aligned_cols=81  Identities=20%  Similarity=0.232  Sum_probs=65.2

Q ss_pred             ccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeC-------CeEEEEEcceecccceEEEEEEEeCCcceeeee
Q psy12425        306 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEG-------DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA  378 (591)
Q Consensus       306 ~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~  378 (591)
                      +|+.+.|.|.+.|.|.|.+.|++++..+............       ...+|.|.++..+|+|.|+|.|.|..|.....+
T Consensus       260 ~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~  339 (347)
T 2ifg_A          260 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI  339 (347)
T ss_dssp             ESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEE
Confidence            3456789999999999999999999988765554432211       245799999999999999999999999998888


Q ss_pred             EEEEecCC
Q psy12425        379 ELIIMTAP  386 (591)
Q Consensus       379 ~l~v~~~p  386 (591)
                      .+.|..+|
T Consensus       340 ~l~V~~~P  347 (347)
T 2ifg_A          340 MAAFMDNP  347 (347)
T ss_dssp             EECSCCCC
T ss_pred             EEEecCCC
Confidence            88887654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.71  E-value=1.2e-15  Score=133.17  Aligned_cols=180  Identities=19%  Similarity=0.281  Sum_probs=120.1

Q ss_pred             EEeeccccceeccccEEEEEEEcCC--CCCeeEEecCC--ccC--------------C---CCCceEEEEeC--CeEEEE
Q psy12425        295 IIVPLRNANAIQNHNAQFQCTITGC--PKPTISWLKGS--REI--------------T---PSARHHIFAEG--DTYTLI  351 (591)
Q Consensus       295 ~~~~~~~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~~--~~~--------------~---~~~~~~~~~~~--~~~~l~  351 (591)
                      +...+..+.+.+|+.+.|.|.+.+.  +.+.+.|++..  ...              .   ...++.+..+.  ...+|.
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (242)
T 1hxm_B            4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (242)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence            3344456678999999999999875  67889999843  211              0   23455555433  467899


Q ss_pred             EcceecccceEEEEEEEeCCc-c------eeeeeEEEEecC-------CcccCCCCcccceeecCCCeEEEEEeeecc-C
Q psy12425        352 INSVYGVDADEYVCRAVNKGG-V------KSTKAELIIMTA-------PKFNVPPRFRDTAYFDKGENVVVKIPFTGY-P  416 (591)
Q Consensus       352 i~~~~~~d~g~y~c~a~n~~g-~------~~~~~~l~v~~~-------p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p  416 (591)
                      |.+++.+|+|.|.|.+.+... .      ......|.|...       |......  .....+..|+.+.|.|.+.+. |
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~--p~~~~~~~g~~v~L~C~~~g~~P  161 (242)
T 1hxm_B           84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFL--PSIAETKLQKAGTYLCLLEKFFP  161 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCC--CCGGGGGSSSCEEEEEEEEEESS
T ss_pred             ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEEC--CChhhcccCCCceEEEEEeeEEC
Confidence            999999999999999998631 1      123467777763       2222111  122234679999999999986 6


Q ss_pred             C-CeEEEeeCCe-Eeeeccc-eEEEecC---CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        417 K-PKITWYRDNE-VIESGGH-FHVETSE---RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       417 ~-~~v~W~~~~~-~~~~~~~-~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      . +.+.|++++. .+..... .....++   ....|.|..... + |.|+|.|.|..+.......+.+
T Consensus       162 ~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          162 DVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             CCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            4 7999999986 4432110 0111111   135688877664 4 9999999999998766666665

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.71  E-value=1.1e-15  Score=130.48  Aligned_cols=182  Identities=19%  Similarity=0.269  Sum_probs=132.8

Q ss_pred             CCCCCCcceEEecCceEEEEecCCCCC---CCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEE
Q psy12425         90 GPPIGPLDVSEITKHTCTLHWNPPKYD---GGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAV  166 (591)
Q Consensus        90 ~~p~~~~~~~~~~~~~~~l~w~~p~~~---~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~  166 (591)
                      .+|.. +.+......++.|+|.+|...   ....+..|.+.++......+...........+.+.+|.+++.|.|+|+|.
T Consensus         6 ~~P~~-l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   84 (211)
T 3p4l_A            6 MPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVT   84 (211)
T ss_dssp             CCCEE-EEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEEEEESSSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCC-EEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEEeCCCceEEEecCcCCCCEEEEEEEEE
Confidence            34444 566777889999999987633   23578899999987665544433345667899999999999999999999


Q ss_pred             ccCCCCCCCCccCcccccCCCCCCC-CCCCCeEEee--cCCeEEEEEecCCCCCCcceEEEEEEeeecCCC---ccEEEE
Q psy12425        167 NENGMGPPLEGINPIKAKSPYDKPS-PPGIPVVTQV--GGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD---AWQRVN  240 (591)
Q Consensus       167 n~~g~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~--~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~---~~~~~~  240 (591)
                      |..|.+..+..   +........|. +|..+.+...  ...++.|+|.+|...+ ..+.+|.|.+...+..   .|....
T Consensus        85 n~~g~~~~S~~---~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~~  160 (211)
T 3p4l_A           85 KGRRSSTWSMT---AHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEAN-GKITGYIIYYSTDVNAEIHDWVIEP  160 (211)
T ss_dssp             ETTEECCCCCC---EEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCC-SCCCEEEEEEESCTTSCGGGSEEEE
T ss_pred             cCCCCCcccee---EeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCC-CCEEEEEEEEEECCCCCCCceEEEE
Confidence            99988776543   33333334454 6666666666  3679999999986544 4799999999876544   233222


Q ss_pred             eeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCC
Q psy12425        241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS  277 (591)
Q Consensus       241 ~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~  277 (591)
                       .......+.|.+|.++..|.|+++|.|..|.+..+.
T Consensus       161 -~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  196 (211)
T 3p4l_A          161 -VVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSE  196 (211)
T ss_dssp             -EESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCC
T ss_pred             -ecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCC
Confidence             234567899999999999999999999999887654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.71  E-value=2.3e-16  Score=139.60  Aligned_cols=171  Identities=13%  Similarity=0.216  Sum_probs=107.7

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCC--ccCC--------C---------CCceEEE--EeCCeEEEE
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGS--REIT--------P---------SARHHIF--AEGDTYTLI  351 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~~~--------~---------~~~~~~~--~~~~~~~l~  351 (591)
                      |.+...+..+.+.+|+.+.|.|.+.+.+.+.+.|++..  ....        .         ..+....  ......+|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            44445556677899999999999999999999998832  1100        0         0011111  122344799


Q ss_pred             EcceecccceEEEEEEEeCCc---ceeeeeEEEEecCC-----------------cccCCCCcccceeecCCCeEEEEEe
Q psy12425        352 INSVYGVDADEYVCRAVNKGG---VKSTKAELIIMTAP-----------------KFNVPPRFRDTAYFDKGENVVVKIP  411 (591)
Q Consensus       352 i~~~~~~d~g~y~c~a~n~~g---~~~~~~~l~v~~~p-----------------~~~~~~~~~~~~~~~~g~~~~l~c~  411 (591)
                      |.+++.+|+|.|.|.+.|..+   .......|.|...+                 .+...+   ....+..|+.+.|.|.
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p---~~~~v~~G~~v~L~C~  159 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQ---SSVSMPVRKAVTLNCL  159 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCC---CCEEEETTCCEEECCE
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeC---CEEEEcCCCCEEEEEE
Confidence            999999999999999999876   33445667776632                 222222   3456789999999999


Q ss_pred             eecc-CCCeEEEeeCCe--Eee------------eccceEEE--ecCCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        412 FTGY-PKPKITWYRDNE--VIE------------SGGHFHVE--TSERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       412 ~~~~-p~~~v~W~~~~~--~~~------------~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                      +.+. +.+.+.|++.+.  ...            ...++.+.  .......|+|.+++.+|+|.|.|.+.+.
T Consensus       160 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          160 YETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             EECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             CCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            8875 889999998531  110            12334433  2234567999999999999999999864

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.70  E-value=8e-16  Score=132.04  Aligned_cols=167  Identities=14%  Similarity=0.211  Sum_probs=115.8

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--ccC-----------------CCCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REI-----------------TPSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++..  ...                 ....++.+..+  ++..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            346688999999999998876  6789998843  110                 01245555543  346799999999


Q ss_pred             cccceEEEEEEEeCCcc---eeeeeEEEEecC----CcccCCCCcccceeecCCCeEEEEEeeecc-CC--CeEEEeeCC
Q psy12425        357 GVDADEYVCRAVNKGGV---KSTKAELIIMTA----PKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK--PKITWYRDN  426 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~---~~~~~~l~v~~~----p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~--~~v~W~~~~  426 (591)
                      .+|+|.|.|.+.+..+.   ......|.|...    |.+...+    ...+..|+.+.|.|.+.+. |.  +.+.|++++
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~----~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~  163 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT----LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSG  163 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC----CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCC
T ss_pred             hhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee----cccccCCCcEEEEEEEEeEECCCcEEEEEecCC
Confidence            99999999999997653   233457777643    2222211    1224679999999999987 76  799999998


Q ss_pred             eEeeec-cceEEEecCC---eeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        427 EVIESG-GHFHVETSER---HAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       427 ~~~~~~-~~~~~~~~~~---~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      ..+... .......++.   .+.|.|......|.|.|+|.|.|..|..
T Consensus       164 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~  211 (220)
T 2fbj_H          164 KDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV  211 (220)
T ss_dssp             SSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             EecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence            765211 1111111111   2358888888889999999999998874

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.70  E-value=1.7e-16  Score=136.06  Aligned_cols=178  Identities=20%  Similarity=0.240  Sum_probs=128.3

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEe-------------cCCeeEEEEecc-CCCcceeEEEEEEcCCC
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET-------------SERHAILTIRDA-SNVDTAPYRVVAENDLG  468 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-------------~~~~~~l~i~~~-~~~~~g~y~c~a~n~~g  468 (591)
                      +....|.|...+.....+.|........ ...|.+..             ......+.|.++ .+...|.|+|.|.|..|
T Consensus         9 ~~P~~l~~~~~~~~sv~l~W~~p~~~~~-~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~t~Y~~~V~A~n~~G   87 (215)
T 1bqu_A            9 EKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALG   87 (215)
T ss_dssp             CCCEEEEEEEETTSCCEEEEECCSCCSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTE
T ss_pred             CCCEeeEeEECCCCcEEEEcCCCCCCCC-CceEEEEEEEcCCCccccccccCCcceEEEcCCccccccEEEEEEEEeccc
Confidence            3445677777666677778865322110 11222221             123467899999 89999999999999999


Q ss_pred             ccc-eEEEEEec--CCCCCCCCCeeeee--cCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec----eeeeeEE
Q psy12425        469 MDS-AIVKIQIS--DRPDPPQFPTVEDI--GHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG----NTRFTTM  539 (591)
Q Consensus       469 ~~~-~~~~~~v~--~~p~~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~----~~~~~~~  539 (591)
                      ... ....+...  .+|.+|.++.+...  +.+++.|+|++|..+++ .+.+|+|+|+......|..+.    ......+
T Consensus        88 ~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~~-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~  166 (215)
T 1bqu_A           88 KVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSF  166 (215)
T ss_dssp             EEECCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGGT-SCEEEEEEEEETTCSSCEECCGGGGCSCCSEE
T ss_pred             CccCCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCCc-ceEEEEEEEccCCCCCceEeccccccCccceE
Confidence            874 23333322  36888988888765  67899999998876554 789999999988878888763    4566799


Q ss_pred             EEcCcccCceEEEEEEEEcCCcCCCCCCCcc--eEEeccccccCC
Q psy12425        540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSD--LITTYGELLSGM  582 (591)
Q Consensus       540 ~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~--~~~t~~~~p~~~  582 (591)
                      +|.+|.+++.|.|+|+|.|..|.|.+|..+.  .++|.+++|..+
T Consensus       167 ~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~~~P~~~  211 (215)
T 1bqu_A          167 TVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKE  211 (215)
T ss_dssp             EECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECCCHHHHH
T ss_pred             EeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccccCCcCC
Confidence            9999999999999999999999977665543  245666666543

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.70  E-value=1.2e-16  Score=136.95  Aligned_cols=177  Identities=15%  Similarity=0.203  Sum_probs=112.8

Q ss_pred             CCCeEEeeccccc--eeccccEEEEEEEcCC---CC-CeeEEecCCccCCCCCceEEE-EeCC----eEEEEEcceeccc
Q psy12425        291 KAPEIIVPLRNAN--AIQNHNAQFQCTITGC---PK-PTISWLKGSREITPSARHHIF-AEGD----TYTLIINSVYGVD  359 (591)
Q Consensus       291 ~~p~~~~~~~~~~--~~~g~~~~l~c~~~~~---p~-~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d  359 (591)
                      .+|.+...+....  +.+|+.+.|.|.+.+.   |. +.|.|++++..+......... ..++    ..+|.|.+++.+|
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence            4566655444444  7899999999999886   33 789999998776543211111 1111    2379999999999


Q ss_pred             ceEEEEEEEeCCcceeeeeEE----EEecCCcccCCCCcccceeecCCCeEEEEEeeec-cCCC-eEEEeeCCeEeeecc
Q psy12425        360 ADEYVCRAVNKGGVKSTKAEL----IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKP-KITWYRDNEVIESGG  433 (591)
Q Consensus       360 ~g~y~c~a~n~~g~~~~~~~l----~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~-~v~W~~~~~~~~~~~  433 (591)
                      +|.|+|.|.|..+.......+    .+..+|.+...+..   .....|+.+.|.|.+.| .|.+ .|.|+++|..+....
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~---~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  164 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPP---AEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK  164 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCC---GGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred             CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCC---hHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce
Confidence            999999999987654122222    23345544322211   11135899999999998 5765 999999998874322


Q ss_pred             ceEEE-ecCC----eeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        434 HFHVE-TSER----HAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       434 ~~~~~-~~~~----~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      ..... ..+.    ...|.|.....+|.|.|+|.|.|.....
T Consensus       165 ~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~  206 (218)
T 2rgs_A          165 DTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN  206 (218)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred             ecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence            21111 1111    1234455555556899999999987654

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.70  E-value=9.5e-16  Score=136.21  Aligned_cols=175  Identities=15%  Similarity=0.198  Sum_probs=119.5

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCC-----CCeeEEecCC--ccC------------CCCCceEEEEeCCeEEEEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCP-----KPTISWLKGS--REI------------TPSARHHIFAEGDTYTLII  352 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p-----~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i  352 (591)
                      .+.+...+..+.+.+|+.+.|.|.+.+.+     .+.+.|++..  ...            ....++.+...+...+|.|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            45555666677889999999999999887     4889999853  211            0134666666667789999


Q ss_pred             cceecccceEEEEEEEeCCcce-eeeeEEEEecCCccc---CCC-----------------CcccceeecCCCeEEEEEe
Q psy12425        353 NSVYGVDADEYVCRAVNKGGVK-STKAELIIMTAPKFN---VPP-----------------RFRDTAYFDKGENVVVKIP  411 (591)
Q Consensus       353 ~~~~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~~---~~~-----------------~~~~~~~~~~g~~~~l~c~  411 (591)
                      .+++.+|+|.|.|.+.|..+.. .....|.|...+...   .+|                 .......+.+|+.++|.|.
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~  174 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCV  174 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEE
T ss_pred             CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEE
Confidence            9999999999999999876532 234566666543210   000                 0012456789999999999


Q ss_pred             eeccCC--CeEEEeeC--CeEee-------------------eccceEEEec--CCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        412 FTGYPK--PKITWYRD--NEVIE-------------------SGGHFHVETS--ERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       412 ~~~~p~--~~v~W~~~--~~~~~-------------------~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                      +.+.+.  +.+.|+++  +....                   ...++.+..+  .....|.|.+++.+|+|.|.|.|.|.
T Consensus       175 ~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          175 TSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             EESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            998764  79999985  22211                   1234444432  23578999999999999999999874

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.70  E-value=2.6e-16  Score=135.49  Aligned_cols=172  Identities=13%  Similarity=0.204  Sum_probs=116.4

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--cc---C---C-------------CCCceEEEEe--CCeEEEEEcc
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--RE---I---T-------------PSARHHIFAE--GDTYTLIINS  354 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~---~---~-------------~~~~~~~~~~--~~~~~l~i~~  354 (591)
                      ....+.+|+.+.|.|.+.+.+  .+.+.|++++  ..   +   .             ...++.+..+  ++..+|.|.+
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence            455688999999999999876  6899998853  11   0   0             0245555543  3456899999


Q ss_pred             eecccceEEEEEEEeCCcce---eeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEeeC
Q psy12425        355 VYGVDADEYVCRAVNKGGVK---STKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWYRD  425 (591)
Q Consensus       355 ~~~~d~g~y~c~a~n~~g~~---~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~  425 (591)
                      ++..|+|.|.|.+.|..+..   .....|.|..    +|.+...+.   ...+..|+.+.|.|.+.|. |.| .+.|+++
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  164 (220)
T 1pz5_B           88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVP---GCSDTSGSSVTLGCLVKGYFPEPVTVKWNYG  164 (220)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECC---CSCCSCSSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             CCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEccc---ccccCCCCcEEEEEEEEEEeCCCeEEEEecC
Confidence            99999999999999976432   2346677763    233221111   1134679999999999987 888 9999998


Q ss_pred             CeEee--eccceEE-EecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        426 NEVIE--SGGHFHV-ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       426 ~~~~~--~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      +....  ....... ......+.|.|.....++ |.|+|.|.|..|.....+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          165 ALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             TCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             CcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            86311  0000000 000124678898888866 9999999999997555443

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.70  E-value=8e-18  Score=146.60  Aligned_cols=174  Identities=13%  Similarity=0.190  Sum_probs=98.9

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCc--cC------------CCCCceEEEEeCCeEEEEEcceecc
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--EI------------TPSARHHIFAEGDTYTLIINSVYGV  358 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~  358 (591)
                      +.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|+++..  ..            ....++.+...+...+|.|.+++.+
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  103 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSE  103 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CC
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHH
Confidence            444555567778999999999999988888899988532  11            0122343333444558999999999


Q ss_pred             cceEEEEEEEeCCcce-eeeeEEEEec---CCcccCCCCcccceeecCCCeEEEEEeeeccC-CC-eEEEeeCCeEeeec
Q psy12425        359 DADEYVCRAVNKGGVK-STKAELIIMT---APKFNVPPRFRDTAYFDKGENVVVKIPFTGYP-KP-KITWYRDNEVIESG  432 (591)
Q Consensus       359 d~g~y~c~a~n~~g~~-~~~~~l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~-~v~W~~~~~~~~~~  432 (591)
                      |+|.|.|.+.|..+.. .....+.|..   +|.+...+.   ...+..|+.+.|.|.+.|.+ .+ .+.|+++|..+..+
T Consensus       104 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  180 (233)
T 3bqu_C          104 DVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  180 (233)
T ss_dssp             CCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECC---CHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CC
T ss_pred             HCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCC---CHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCC
Confidence            9999999999876643 2234555554   333332111   11123589999999999854 43 79999999877544


Q ss_pred             cceE--EEecC-----CeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        433 GHFH--VETSE-----RHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       433 ~~~~--~~~~~-----~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      ....  .....     ....|.|.....+|.|.|+|.|.|....
T Consensus       181 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          181 VLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             ceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            1111  11111     1356889999899999999999998554

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.69  E-value=2e-15  Score=140.15  Aligned_cols=308  Identities=16%  Similarity=0.161  Sum_probs=139.1

Q ss_pred             CcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeec-CCeEEEEEecCCC-C-CCcceEEEEEEeeecC
Q psy12425        156 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVG-GDFVNLSWDKPLD-D-GGSRIQGYWIDKHEVG  232 (591)
Q Consensus       156 ~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~v~l~w~~~~~-~-~~~~~~~y~~~~~~~~  232 (591)
                      ...|.+.+.+.+..|.+.....         ...|.+|.++.+.... ..++.|+|.++.. + .+..+..|.+.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~---------~v~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~   77 (380)
T 3lb6_C            7 AVGCLYTFLISTTFGCTSSSDT---------EIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIG   77 (380)
T ss_dssp             ---------------------------------CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETT
T ss_pred             ehhhhhhheeecccccccCCcc---------cccCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCC
Confidence            4456677777776664422211         1246778888887666 5889999999865 2 2235788999999988


Q ss_pred             CCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcC----CCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccc
Q psy12425        233 SDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNE----AGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNH  308 (591)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~----~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  308 (591)
                      ...|......  ..  .....+.....|.|+++|.|.    .|.+.++..+..+....+.              ......
T Consensus        78 ~~~w~~~~~~--~~--~~~~~~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~e--------------g~P~~~  139 (380)
T 3lb6_C           78 SETWKTIITK--NL--HYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQ--------------GIPETX  139 (380)
T ss_dssp             CSSCEEEEES--SS--EEEEECCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCC--------------SCTTSS
T ss_pred             CCcceEEEec--cE--EEEEeecCCCceEEEEEeecCCcccCCccCccccchhhcccCCC--------------CCCCCC
Confidence            7889888664  22  233345558899999999965    5666555443333322110              011223


Q ss_pred             cEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcc
Q psy12425        309 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF  388 (591)
Q Consensus       309 ~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~  388 (591)
                      ...|.|.........+.|...... .....|.         |.......  .....|.-.             .      
T Consensus       140 P~nl~C~~~~~~~l~csW~p~~~~-~~~~~Y~---------l~y~~~~~--~~~~~C~~~-------------~------  188 (380)
T 3lb6_C          140 VQDMDCVYYNWQYLLCSWKPGIGV-LLDTNYN---------LFYWYEGL--DHALQCVDY-------------I------  188 (380)
T ss_dssp             CEEEEEEEETTTEEEEEEECC-------CCEE---------EEEECTTC--SSCEECSEE-------------E------
T ss_pred             CcEeEEEECCCcEEEEEEcCCCCC-CCCccEE---------EEEEECCC--CccccCCCc-------------c------
Confidence            346677766655566778643211 0001111         11100000  000001000             0      


Q ss_pred             cCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        389 NVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       389 ~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                                 ...|  ....|.                                  +...++.....|.+.+.|.|..|
T Consensus       189 -----------~~~g--~~~~C~----------------------------------~~~~~~~~~~~Y~i~V~a~n~~G  221 (380)
T 3lb6_C          189 -----------KADG--QNIGCR----------------------------------FPYLEASDYKDFYICVNGSSENK  221 (380)
T ss_dssp             -----------EC----CEEEEE----------------------------------CCCCTTCSSSCEEEEEEEC----
T ss_pred             -----------ccCC--ceEEEE----------------------------------eCCCcccceeEEEEEEEEEcCCe
Confidence                       0000  001121                                  11123344556778888988888


Q ss_pred             ccc-eEEEEEecC--CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcC-c
Q psy12425        469 MDS-AIVKIQISD--RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITG-L  544 (591)
Q Consensus       469 ~~~-~~~~~~v~~--~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~-l  544 (591)
                      ... ....+....  +|.||.++.+...+.+++.|+|++|....+..+.+|+++|+.. +..|......  ..+.|.+ |
T Consensus       222 ~~~s~~~~~~~~~~v~p~pP~~l~v~~~~~~~l~l~W~~P~~~~~~~~l~Yev~y~~~-~~~w~~~~~~--~~~~l~~~L  298 (380)
T 3lb6_C          222 PIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIRED-DTTLVTATVE--NETYTLKTT  298 (380)
T ss_dssp             -CCCEEEEECGGGSCCCCCCEEEEEC-------CEEEECCSSSCCSTTEEEEECC---------CCEES--SSCC-----
T ss_pred             eeccccEEEcHHHcccCCCCceEEEEEcCCCeEEEEECCCCCCCCcceEEEEEEEEeC-CCCceEeccc--ceEEEeCcc
Confidence            753 334454443  6899999988877778999999988654445778999999975 4566543222  3577888 9


Q ss_pred             ccCceEEEEEEEEcC-----CcC-CCCCCCcce
Q psy12425        545 SPGHQYEFRVYAENV-----YGR-SDPSTTSDL  571 (591)
Q Consensus       545 ~~~~~Y~~~v~A~n~-----~G~-~~~s~~~~~  571 (591)
                      .+++.|.|+|+|...     .|. |++|.+..+
T Consensus       299 ~p~t~Y~~qVRa~~~~~~~~~g~WSeWS~~~~~  331 (380)
T 3lb6_C          299 NETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCW  331 (380)
T ss_dssp             -------CCEEEEECTTTCSSCCCCCCCCC---
T ss_pred             CCCcEEEEEEEEEEcccCCCCCCCCCCCCCEEE
Confidence            999999999999843     232 555655433

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.69  E-value=1e-16  Score=130.73  Aligned_cols=152  Identities=17%  Similarity=0.242  Sum_probs=107.1

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecCCccCCC------------CCceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITP------------SARHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      .+.+..|+.+.|.|.+.+ |.+.|.|++++..+..            ..+..+  .....+|.|.+++..|+|.|+|.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL--DTVSGSLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE--CTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEE--eCCCCeEEECCCChhhCceEEEEEe
Confidence            355789999999999854 8889999997653321            012222  2223379999999999999999999


Q ss_pred             eCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEE
Q psy12425        369 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTI  448 (591)
Q Consensus       369 n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i  448 (591)
                      |..|  ...+.|.|..++..   |..    ..... ...|.|.+.+.|.|.+.|++++..+.....         ..+.+
T Consensus        81 n~~~--~~~~~L~V~~~~~~---p~i----~~~~~-~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~---------~~l~~  141 (171)
T 1ccz_A           81 NITD--TMKFFLYVLEMVSK---PMI----YWECS-NATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------KTMSY  141 (171)
T ss_dssp             TCCS--CEEEEEEEECCCCC---CEE----EEETT-TTEEEEECSSCSSCEEEEEETTEEEEEESS---------SEEEE
T ss_pred             CCCC--cEEEEEEEECcCCC---CEE----EEecC-CcEEEEEeCCCCCcEEEEEECCEECcCCcc---------eEEEE
Confidence            8877  56677888765321   111    11111 137999999999999999999988754322         23333


Q ss_pred             eccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        449 RDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       449 ~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      .+  .+|.|.|+|.|.|..|..+....+
T Consensus       142 ~~--~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          142 QW--TNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             EC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             ec--cCCCceEEEEEEcccCcccceeEE
Confidence            33  678899999999999987665544

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.69  E-value=1.6e-15  Score=136.51  Aligned_cols=161  Identities=17%  Similarity=0.149  Sum_probs=97.1

Q ss_pred             cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe--ecCcceEEE--cCCcCCcEEEEEEEEEccCCC
Q psy12425         96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST--TCHDTTFIV--QGLTEGQEYLFHVMAVNENGM  171 (591)
Q Consensus        96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~i--~~l~~~~~y~~~~~a~n~~g~  171 (591)
                      +.+... ...+.|+|.+|... ...+. |.++++..+...|.....  ......+.+  ..|.++..|.|||+|.| .|.
T Consensus        10 v~~~~~-n~~~iL~W~pp~~~-~~~v~-Y~V~y~~~~~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV~A~n-~~~   85 (306)
T 3s98_A           10 VEVDII-DDNFILRWNRSDES-VGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEK-ENT   85 (306)
T ss_dssp             CEEEEE-TTEEEEECC---------CE-EEEEEEESSCSSCEECTTCSSBSSSEEECCC---CTTSCEEEEEEEEC-SSC
T ss_pred             eEEEEE-CCeEEEEEcCCCCC-CCCeE-EEEEEEECCCCCcEECCCccCCCCCEEEccccccCCCCcEEEEEEEEe-CCc
Confidence            445443 55688999988743 34565 999999887778876421  233344444  45679999999999999 775


Q ss_pred             CCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCC-----CcceEEEEEEeeecCCCc-cEEEEeeecC
Q psy12425        172 GPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG-----GSRIQGYWIDKHEVGSDA-WQRVNVAICA  245 (591)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~-----~~~~~~y~~~~~~~~~~~-~~~~~~~~~~  245 (591)
                      +..+..........  ..+.+|. +.+.. ..+++.|+|.++...+     ...+.+|.+.+...+... |. ..   ..
T Consensus        86 S~~s~~~~f~~~~~--~~~~pP~-v~~~~-~~~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~~~~~~~~~-~~---~~  157 (306)
T 3s98_A           86 SSWYEVDSFTPFRK--AQIGPPE-VHLEA-EDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEER-IE---NI  157 (306)
T ss_dssp             EEEEECCCBCHHHH--CBCCCCE-EEEEE-CSSCEEEEEECC---CCCC-----CCEEEEEEEETTTCCCEE-EE---EE
T ss_pred             CCCEeeeeEechhh--CccCCCe-EEEEE-cCCEEEEEEECCCCCCcceeccCCcEEEEEEEEECCCCCeEE-Ee---cc
Confidence            54432222211110  1334443 44443 4468999999554321     236788999988776544 33 22   23


Q ss_pred             CceeeecCcccCCcEEEEEEEEc
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQN  268 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n  268 (591)
                      ...+.|.+|.++..|.++++|.+
T Consensus       158 ~~~~~l~~L~p~t~Y~~~V~A~~  180 (306)
T 3s98_A          158 YSRHKIYKLSPETTYCLKVKAAL  180 (306)
T ss_dssp             CTEEEECSCCTTCEEEEEEEEEE
T ss_pred             cceEEEccCCCCCeEEEEEEEEE
Confidence            57899999999999999999998

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.68  E-value=1.1e-15  Score=132.22  Aligned_cols=171  Identities=16%  Similarity=0.223  Sum_probs=114.4

Q ss_pred             cccceeccccEEEEEEEcCCCC----CeeEEecCC--ccC----------------CCCCceEEEEe--CCeEEEEEcce
Q psy12425        300 RNANAIQNHNAQFQCTITGCPK----PTISWLKGS--REI----------------TPSARHHIFAE--GDTYTLIINSV  355 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~----~~v~W~~~~--~~~----------------~~~~~~~~~~~--~~~~~l~i~~~  355 (591)
                      ..+.+.+|+.+.|.|.+.+.+.    +.+.|++..  ...                ....++.+..+  ....+|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV   87 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence            4567889999999999998875    899998742  211                01235555543  24579999999


Q ss_pred             ecccceEEEEEEEeCCc------c---eeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eE
Q psy12425        356 YGVDADEYVCRAVNKGG------V---KSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KI  420 (591)
Q Consensus       356 ~~~d~g~y~c~a~n~~g------~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v  420 (591)
                      +.+|+|.|.|.+.|..|      .   ......|.|..    +|.+...+.   ...+..|+.+.|.|.+.+. |.+ .+
T Consensus        88 ~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~---~~~~~~g~~~~l~C~~~g~~P~p~~v  164 (228)
T 3bae_H           88 DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAP---VCGDTTGSSVTLGCLVKGYFPEPVTL  164 (228)
T ss_dssp             CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC--------CCSEEEEEEEEEEEBSSCCEE
T ss_pred             CcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecc---cccccCCCCEEEEEEEccEeCCCEEE
Confidence            99999999999999765      1   12346777763    233321110   1124679999999999986 777 99


Q ss_pred             EEeeCCeEeeeccceEEEecC---CeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425        421 TWYRDNEVIESGGHFHVETSE---RHAILTIRDASNVDTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       421 ~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  474 (591)
                      .|++++..+.......+...+   ....|.|.....++ |.|+|.|.|..|......
T Consensus       165 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~  220 (228)
T 3bae_H          165 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDK  220 (228)
T ss_dssp             EEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEE
Confidence            999998753211111111111   24568899888866 999999999988754433

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.68  E-value=4.4e-16  Score=135.12  Aligned_cols=142  Identities=15%  Similarity=0.139  Sum_probs=110.5

Q ss_pred             CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEec---CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEE
Q psy12425        441 ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS---DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYI  517 (591)
Q Consensus       441 ~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~---~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~  517 (591)
                      .....+.|.+|.+...|.|++.|.|..|.+..+..+.+.   ..|.+|.++.+...+.+++.|+|.+|...+ +.+.+|.
T Consensus        55 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~-g~i~~Y~  133 (234)
T 3f7q_A           55 SKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETN-GEITAYE  133 (234)
T ss_dssp             ESSSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCCCCCCEEEECSSSCEEEECCCCSCCS-SCCCEEE
T ss_pred             CCccEEEECCCCCCCEEEEEEEEEeCCCcCCCCCeEEEEcCCCCCCCCCccEEEEecCCEEEEEEcCCCCCC-CceeEEE
Confidence            456789999999999999999999998877444333333   457788899999999999999999886544 4899999


Q ss_pred             EEeeeCCCCc-----eEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCC
Q psy12425        518 VEKREHPMSS-----WIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGME  583 (591)
Q Consensus       518 v~~~~~~~~~-----~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~  583 (591)
                      |.|+......     |...  .......++|.+|.+++.|.|+|+|.|..|.|++|.....++|.+.+|+.+|
T Consensus       134 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~~P~~~P  206 (234)
T 3f7q_A          134 VCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIP  206 (234)
T ss_dssp             EEEEEBCTTSCBSSCCEECCCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGSCCCCCCCC
T ss_pred             EEEEECCCCCCccCcceEEEecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecCCCCCCCCc
Confidence            9998765432     3333  2344578999999999999999999999999999875334466666665554

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.68  E-value=7.8e-15  Score=132.34  Aligned_cols=254  Identities=14%  Similarity=0.129  Sum_probs=161.3

Q ss_pred             CceEEEEecCCC-CCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcc
Q psy12425        103 KHTCTLHWNPPK-YDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI  181 (591)
Q Consensus       103 ~~~~~l~w~~p~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~  181 (591)
                      ..++.|.|.++. ...+..+.+|.|.+.......+. .  .  .....+.+|.+++.|.|+|.|.|..|.+..+..   .
T Consensus        22 ~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~~~-~--~--~~~~~~~~l~p~t~Y~~~V~A~n~~G~s~~s~~---~   93 (290)
T 3l5i_A           22 YRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN-Y--T--VNATKLTVNLTNDRYLATLTVRNLVGKSDAAVL---T   93 (290)
T ss_dssp             CEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCCEE-E--E--ESSSEEEEEECSSCEEEEEEEEESSCBCCCEEE---E
T ss_pred             CceEEEEEccCCchhcCCceEeEEEEEEeCCcCcee-E--e--cCCcEEEEEcCCceEEEEEEEEcCCCCCCCceE---E
Confidence            578999999743 23456889999999887654431 1  1  123456778899999999999999998866532   1


Q ss_pred             cccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCC-----ccEEEEeeecCCceeeecCccc
Q psy12425        182 KAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD-----AWQRVNVAICAPSQINIPNLIE  256 (591)
Q Consensus       182 ~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~  256 (591)
                      .......++.++..+.+... .+++.|+|.++..    .+.+|.+++...+..     .|....  ......+.+.+|.+
T Consensus        94 ~~~~~~~~~~p~~~~~~~~~-~~si~l~W~~p~~----~i~~Y~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~p  166 (290)
T 3l5i_A           94 IPACDFQATHPVMDLKAFPK-DNMLWVEWTTPRE----SVKKYILEWCVLSDKAPCITDWQQED--GTVHRTYLRGNLAE  166 (290)
T ss_dssp             ECCTTCCCCCCCEEEEEEEE-TTEEEEEEECCSS----CCCEEEEEEEEECSSSCCCCEEEEEE--TTCSEEECCSCCCT
T ss_pred             eecccccCCCccceeEEEeC-CCeEEEEEeCCCC----CCCcEEEEEEECCCCCCCCcCeEEcc--CCCcceEEecCcCC
Confidence            11111123444444555544 4699999998632    688999999876544     344442  23456788899999


Q ss_pred             CCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEc-----CCC--CCeeEEecC
Q psy12425        257 GRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTIT-----GCP--KPTISWLKG  329 (591)
Q Consensus       257 ~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~-----~~p--~~~v~W~~~  329 (591)
                      +..|.|++.|.|..|.+..  ...........+..+|.+..     .......+.|+|...     +.+  .-.|.|...
T Consensus       167 ~t~Y~~~V~A~n~~g~g~~--~~~~~~t~~~~P~~~p~~~~-----~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~  239 (290)
T 3l5i_A          167 SKCYLITVTPVYADGPGSP--ESIKAYLKQAPPSKGPTVRT-----KKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTI  239 (290)
T ss_dssp             TCEEEEEEEEEETTEECCC--EEEEEESSCCCCSSCCCEEE-----EEECSSCEEEEECCCCHHHHSSCCCEEEEEEEET
T ss_pred             ccEEEEEEEEEeCCccccc--EEEEeEccccCCCCCCeeeE-----eeccCCEEEEEEcCCChhccCCEEEEEEEEEEeC
Confidence            9999999999999887653  12222222222223343322     123456677877621     111  113444433


Q ss_pred             CccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEec
Q psy12425        330 SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT  384 (591)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~  384 (591)
                      +.     ........+....+.|.+|.+...|.|++.|.|..| ...+..+.+..
T Consensus       240 ~~-----~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~~~~~T  288 (290)
T 3l5i_A          240 IG-----NETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFTFTT  288 (290)
T ss_dssp             TS-----CCEEEEEETTCSEEEECSCCTTCEEEEEEEEEETTE-EEECCCEEEEC
T ss_pred             CC-----CeEEEEeCCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCceEeec
Confidence            21     112333455556899999999999999999999999 55554455443

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.68  E-value=9.2e-16  Score=132.27  Aligned_cols=165  Identities=13%  Similarity=0.208  Sum_probs=113.3

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--ccC-----------------CCCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REI-----------------TPSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ....+.+|+.+.|.|.+.+.+  .+.+.|++..  ...                 ....++.+..+  ....+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            345688999999999999876  6889998843  211                 01245555544  346799999999


Q ss_pred             cccceEEEEEEEeCCc-----c---eeeeeEEEEecC----CcccC-CCCcccceeecCCCeEEEEEeeecc-CCC-eEE
Q psy12425        357 GVDADEYVCRAVNKGG-----V---KSTKAELIIMTA----PKFNV-PPRFRDTAYFDKGENVVVKIPFTGY-PKP-KIT  421 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g-----~---~~~~~~l~v~~~----p~~~~-~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~  421 (591)
                      .+|+|.|.|.+.|..|     .   ......|.|...    |.+.. .+.    ..+..|+.+.|.|.+.|. |.+ .+.
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~----~~~~~g~~v~L~C~~~g~~P~p~~v~  163 (225)
T 1op3_H           88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPS----SKSTSGGTAALGCLVKDYFPEPVTVS  163 (225)
T ss_dssp             GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCC----TTCCCCCEEEEEEEEEEEBSSCCEEE
T ss_pred             hhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEeccc----ccccCCCcEEEEEEEEeEECCCeEEE
Confidence            9999999999999865     1   123467777652    33221 111    124579999999999986 776 999


Q ss_pred             EeeCCeEeeecc-ceEEEecC---CeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        422 WYRDNEVIESGG-HFHVETSE---RHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       422 W~~~~~~~~~~~-~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      |++++..+.... ......++   ....|.|.....+| |.|+|.|.|..+.
T Consensus       164 W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          164 WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (225)
T ss_dssp             CCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred             EecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence            999986532110 00111111   13468999998888 9999999997654

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.68  E-value=2e-16  Score=141.00  Aligned_cols=203  Identities=15%  Similarity=0.201  Sum_probs=115.0

Q ss_pred             ccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCC
Q psy12425        255 IEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT  334 (591)
Q Consensus       255 ~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~  334 (591)
                      ...+.+.|.|.|.+..|....+              ....+...+..+.+.+|+.+.|.|.+.+ +.+.+.|++......
T Consensus         4 ~~~~~~~y~~~~~~~~g~~~~~--------------~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~   68 (270)
T 3qib_D            4 ERADLIAYLKQATKGGGGSGGG--------------GGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNE   68 (270)
T ss_dssp             --------------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCC
T ss_pred             hhhhHHHHHHHHhccCCccccc--------------cceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCC
Confidence            3457789999998876643211              1233444455677899999999999866 678999988321100


Q ss_pred             --------CC---------C-ceEEEE-eCCeEEEEEcceecccceEEEEEEEeCCc----ceeeeeEEEEecCCcccCC
Q psy12425        335 --------PS---------A-RHHIFA-EGDTYTLIINSVYGVDADEYVCRAVNKGG----VKSTKAELIIMTAPKFNVP  391 (591)
Q Consensus       335 --------~~---------~-~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~a~n~~g----~~~~~~~l~v~~~p~~~~~  391 (591)
                              ..         . ++.+.. .....+|.|.+++.+|+|.|.|.+.+..+    .......+.|........+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~  148 (270)
T 3qib_D           69 FKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFP  148 (270)
T ss_dssp             EEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBC
T ss_pred             cEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccC
Confidence                    00         0 333332 23466899999999999999999997432    2234456777652221112


Q ss_pred             CCcc----cceeecCCCeEEEEEeeec-cCCC-eEEEeeCCeEeeeccceEE---E-----ecC---CeeEEEEeccCCC
Q psy12425        392 PRFR----DTAYFDKGENVVVKIPFTG-YPKP-KITWYRDNEVIESGGHFHV---E-----TSE---RHAILTIRDASNV  454 (591)
Q Consensus       392 ~~~~----~~~~~~~g~~~~l~c~~~~-~p~~-~v~W~~~~~~~~~~~~~~~---~-----~~~---~~~~l~i~~~~~~  454 (591)
                      |...    ....+..|+.+.|.|.+.+ .|.+ .+.|+++|..+..+.....   .     .++   -...|.|.....+
T Consensus       149 P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~  228 (270)
T 3qib_D          149 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQ  228 (270)
T ss_dssp             CEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHH
T ss_pred             CceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhc
Confidence            2110    1112345899999999998 6666 8999999998864322110   0     011   1245778877777


Q ss_pred             c-ceeEEEEEEcCCCccce
Q psy12425        455 D-TAPYRVVAENDLGMDSA  472 (591)
Q Consensus       455 ~-~g~y~c~a~n~~g~~~~  472 (591)
                      | .|.|+|.|.|.......
T Consensus       229 d~~g~YtC~v~~~~l~~~~  247 (270)
T 3qib_D          229 NPRNHFRCQVQFYGLSEND  247 (270)
T ss_dssp             STTCEEEEEEEECCBCTTS
T ss_pred             cCCCeEEEEEEecCCCCcc
Confidence            7 99999999998765543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.68  E-value=1.4e-15  Score=129.79  Aligned_cols=72  Identities=15%  Similarity=0.177  Sum_probs=58.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEEe------------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRVV------------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++++|.|.+.+.|.+.+.|+|+  |..+            ....++.+...+...+|.|.+++.+|+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            7789999999999999999988889999984  2221            1124666655666779999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+.|.
T Consensus        87 C~~~~~   92 (210)
T 1lk3_L           87 CQQSWN   92 (210)
T ss_dssp             EEECSS
T ss_pred             EEEEcC
Confidence            999765

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=2.6e-16  Score=117.93  Aligned_cols=101  Identities=27%  Similarity=0.384  Sum_probs=88.9

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec--eeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      .+|.+|.++.+...+.+++.|+|++|..+++..+.+|.|+++......|....  ....+.+++.+|.+++.|.|+|+|.
T Consensus         6 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   85 (110)
T 2yuw_A            6 SGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAV   85 (110)
T ss_dssp             CCSCCCEEEEEEEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCCccEEEeccCCeEEEEECCCCCCCCCCccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEEEE
Confidence            57889998999999999999999998877888899999999988888898873  3467899999999999999999999


Q ss_pred             cCCcCCCCCCCcceEEecccccc
Q psy12425        558 NVYGRSDPSTTSDLITTYGELLS  580 (591)
Q Consensus       558 n~~G~~~~s~~~~~~~t~~~~p~  580 (591)
                      |.+|.|++|..+..+++.+.+|+
T Consensus        86 n~~G~s~~S~~~~~v~~~~~~P~  108 (110)
T 2yuw_A           86 NAAGASEPKYYSQPILVKESGPS  108 (110)
T ss_dssp             ETTEECCCEECSSCEECCCCCCC
T ss_pred             cCCcCCCCcCCCCCEEecCCCCC
Confidence            99999999988877787766554

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.68  E-value=3.5e-16  Score=132.82  Aligned_cols=170  Identities=11%  Similarity=0.160  Sum_probs=109.3

Q ss_pred             eccccc-eeccccEEEEEEEcCCC----CCeeEEecCCccCCCCCc-eEEEEeCC----eEEEEEcceecccceEEEEEE
Q psy12425        298 PLRNAN-AIQNHNAQFQCTITGCP----KPTISWLKGSREITPSAR-HHIFAEGD----TYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       298 ~~~~~~-~~~g~~~~l~c~~~~~p----~~~v~W~~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      ++.... +..|+.+.|.|.+.+.+    .+.|.|++++..+..... ......++    ...|.|.+++.+|+|.|+|.|
T Consensus         8 ~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   87 (207)
T 2vol_A            8 PPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRV   87 (207)
T ss_dssp             CCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred             CcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEE
Confidence            334334 78999999999998874    348999998876543210 00011111    236999999999999999999


Q ss_pred             EeCCcceeeeeEE----EEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCCeEeeeccceEEE-ec
Q psy12425        368 VNKGGVKSTKAEL----IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDNEVIESGGHFHVE-TS  440 (591)
Q Consensus       368 ~n~~g~~~~~~~l----~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~-~~  440 (591)
                      .|..+.......+    .+..+|.+...+....   ...|+.+.|.|.+.|. |. +.+.|+++|..+......... ..
T Consensus        88 ~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~---~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~  164 (207)
T 2vol_A           88 NSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKE---QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDT  164 (207)
T ss_dssp             ECTTCSSCEEEEECCCCCCCBCCEEEEECCCTG---GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECT
T ss_pred             EccCCCCceEEEeccCCCCCcCCeEEEeCCCHH---HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECC
Confidence            9988754222222    3344555433222111   2358999999999985 54 389999999987533221111 11


Q ss_pred             CC----eeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        441 ER----HAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       441 ~~----~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      +.    ...|.|.....+|.|.|+|.|.|.....
T Consensus       165 ~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~~  198 (207)
T 2vol_A          165 DGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHN  198 (207)
T ss_dssp             TSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSGG
T ss_pred             CCCEEEEEEEEECHHHcCCCCEEEEEEECCCCCC
Confidence            11    2345566665667999999999986543

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.68  E-value=1.8e-15  Score=129.66  Aligned_cols=73  Identities=12%  Similarity=0.125  Sum_probs=59.1

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEEC--CEEee------------cCCceeEEEeCCeEEEEEcccCCCCceEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRVVQ------------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTV   68 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c   68 (591)
                      ..+.+.+|++++|.|.+.+.|.+.+.|+|.  +....            ...++.+.......+|.|.+++.+|+|.|.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   87 (213)
T 3mj8_L            8 PLVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYC   87 (213)
T ss_dssp             SEEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CcEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEE
Confidence            388999999999999999999999999992  22110            2346666666777899999999999999999


Q ss_pred             EEEcCCe
Q psy12425         69 NLSNSSG   75 (591)
Q Consensus        69 ~~~n~~g   75 (591)
                      .|.|..|
T Consensus        88 ~~~~~~~   94 (213)
T 3mj8_L           88 QSWDGTN   94 (213)
T ss_dssp             EEEETTT
T ss_pred             EeccCCc
Confidence            9987644

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.67  E-value=3.9e-16  Score=116.88  Aligned_cols=101  Identities=28%  Similarity=0.343  Sum_probs=86.8

Q ss_pred             CCCCCCCCCee-eeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEc
Q psy12425        480 DRPDPPQFPTV-EDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAEN  558 (591)
Q Consensus       480 ~~p~~p~~~~~-~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n  558 (591)
                      .+|.+|..+.+ ...+.+++.|+|++|..+++..+.+|.|+++......|..+.......++|.+|.+++.|.|+|+|.|
T Consensus         7 ~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n   86 (110)
T 2crz_A            7 GPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAAN   86 (110)
T ss_dssp             CCCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEEESCSEEEEESCCTTCEEEECCEEEC
T ss_pred             CCCCCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceEEEEeCCcEEEEECCcCCCCEEEEEEEEEc
Confidence            57899999998 56788999999998887888899999999998777889888777788999999999999999999999


Q ss_pred             CCcCCCCCCCcceEEeccccccC
Q psy12425        559 VYGRSDPSTTSDLITTYGELLSG  581 (591)
Q Consensus       559 ~~G~~~~s~~~~~~~t~~~~p~~  581 (591)
                      ..|.|.+|..+.+ +|...+|..
T Consensus        87 ~~G~g~~S~~~~~-~T~~~~P~~  108 (110)
T 2crz_A           87 KMGFGPFSEKCDI-TTAPGSGPS  108 (110)
T ss_dssp             SSCBCCCCCCEEE-ECCCSCCCC
T ss_pred             CCccCCCCCcccc-ccCCCCCCC
Confidence            9999999988655 555545443

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.67  E-value=1.7e-16  Score=121.61  Aligned_cols=114  Identities=25%  Similarity=0.515  Sum_probs=97.4

Q ss_pred             CCccceEEEEEecCCCCCCCCC--eeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe---ceeeeeEEEE
Q psy12425        467 LGMDSAIVKIQISDRPDPPQFP--TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV---GNTRFTTMAI  541 (591)
Q Consensus       467 ~g~~~~~~~~~v~~~p~~p~~~--~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~---~~~~~~~~~i  541 (591)
                      .|..+.++.+.+..+|.+|.++  .+...+.+++.|+|.+| .+++.++.+|+|+++... ..|...   .......++|
T Consensus         3 ~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~v   80 (121)
T 1wf5_A            3 SGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENN-APWTVLLASVDPKATSVTV   80 (121)
T ss_dssp             CCCCCCCCCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCC-CCCSSCEEEEEEEEECTT-CCCEEEESSCCTTCCEEEE
T ss_pred             CCcccceEEEEEeeCCccCCCcceeeEeccCCEEEEEEcCC-CCCCCcceEEEEEEEcCC-CCceEeEcccCCCccEEEE
Confidence            5777788888999999999999  88888899999999987 567779999999998765 778765   2445678999


Q ss_pred             cCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccCC
Q psy12425        542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGM  582 (591)
Q Consensus       542 ~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~  582 (591)
                      .+|.|++.|.|+|+|.|..|.|.+|..+..++|++.+|..+
T Consensus        81 ~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~~t~~~~P~~~  121 (121)
T 1wf5_A           81 KGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGPSSG  121 (121)
T ss_dssp             ESCCTTCEEEEEEEEEESSCEEEECCCCSCEECCCCSSCCC
T ss_pred             CCcCCCCEEEEEEEEEcCCccCCCcCCcceeEcCCCCCCCC
Confidence            99999999999999999999999999876778887777653

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.67  E-value=4.7e-15  Score=127.54  Aligned_cols=171  Identities=15%  Similarity=0.206  Sum_probs=115.6

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--ccC-----------------CCCCceEEEEeC--CeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REI-----------------TPSARHHIFAEG--DTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~-----------------~~~~~~~~~~~~--~~~~l~i~~~~  356 (591)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++..  ...                 ....++.+..+.  ...+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            456788999999999998875  4789999843  111                 012355555442  46799999999


Q ss_pred             cccceEEEEEEEeCCc------ceeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEee
Q psy12425        357 GVDADEYVCRAVNKGG------VKSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWYR  424 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~  424 (591)
                      .+|+|.|.|.+.+..|      .......|.|..    +|.+...+   ....+..|+.+.|.|.+.+. |.+ .+.|++
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~---~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  164 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLV---SCENSNPSSTVAVGCLAQDFLPDSITFSWKY  164 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEE---CTTCCCSSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             HHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEec---CCcccCCCCcEEEEEEEEEEeCCCeEEEeEc
Confidence            9999999999998753      112345777763    23322111   01124679999999999987 777 999999


Q ss_pred             -CCeEeeeccceE-EEecC---CeeEEEEeccCC--CcceeEEEEEEcCCCccceE
Q psy12425        425 -DNEVIESGGHFH-VETSE---RHAILTIRDASN--VDTAPYRVVAENDLGMDSAI  473 (591)
Q Consensus       425 -~~~~~~~~~~~~-~~~~~---~~~~l~i~~~~~--~~~g~y~c~a~n~~g~~~~~  473 (591)
                       +|..+.....+. ....+   ..+.|+|.....  +|.|.|+|.|.|..|.....
T Consensus       165 ~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~  220 (223)
T 1dee_B          165 KNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD  220 (223)
T ss_dssp             TTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred             cCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence             887764310000 00011   135678877776  78999999999998876443

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=9.2e-16  Score=116.68  Aligned_cols=88  Identities=17%  Similarity=0.325  Sum_probs=79.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      +..+.+.+|+++.|.|.+.|.|.|.+.|+|+|..+. ..++.+...+...+|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~  109 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATI  109 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEE
T ss_pred             CCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEE
Confidence            467899999999999999999999999999999997 4567777777778999999999999999999999999999999


Q ss_pred             EEEEecCCC
Q psy12425         82 TINITGLPG   90 (591)
Q Consensus        82 ~l~v~~~p~   90 (591)
                      .|.|...|.
T Consensus       110 ~l~V~~~P~  118 (118)
T 2e7c_A          110 RIRVVEKAG  118 (118)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEcCCC
Confidence            999998763

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=4.7e-16  Score=113.41  Aligned_cols=85  Identities=22%  Similarity=0.236  Sum_probs=76.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+  .|.+.+.|+|||..+..+.++++...+....|.|.+++.+|+|.|+|.|.|.  ..+.++
T Consensus        14 ~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a   89 (100)
T 2yuz_A           14 LTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPA   89 (100)
T ss_dssp             CCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEE
T ss_pred             CCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEE
Confidence            567899999999999999  8889999999999999989999888888889999999999999999999998  556778


Q ss_pred             EEEEecCCC
Q psy12425         82 TINITGLPG   90 (591)
Q Consensus        82 ~l~v~~~p~   90 (591)
                      .|.|..+|.
T Consensus        90 ~L~V~~~P~   98 (100)
T 2yuz_A           90 KVHVISGPS   98 (100)
T ss_dssp             EEEEECCSC
T ss_pred             EEEEeCCCC
Confidence            899987764

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.67  E-value=3.7e-16  Score=120.61  Aligned_cols=116  Identities=29%  Similarity=0.315  Sum_probs=95.8

Q ss_pred             ceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCC--CCceEEece--eeeeEEEEcCccc
Q psy12425        471 SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP--MSSWIRVGN--TRFTTMAITGLSP  546 (591)
Q Consensus       471 ~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~--~~~~~~~~~--~~~~~~~i~~l~~  546 (591)
                      +..+.+.+.++|.+|.++.+...+.+++.|+|.+| .+++..+.+|.|+|+...  ...|.....  ...+. .+.+|.|
T Consensus         6 s~~~~~~v~~~P~~P~~~~~~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~~~-~i~~L~p   83 (127)
T 1uey_A            6 SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT-AQLNLSP   83 (127)
T ss_dssp             CCCCCCCCCCSCCCCEEEEEECCSSSCEEEEEECC-CCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCE-EEECCCT
T ss_pred             cEEEEEEeecCCcCCCCcEEEEccCCEEEEEEECC-CCCCCCceEEEEEEEECCCCCCccEEEeeeCCCceE-EEecCCC
Confidence            55667788899999999999999999999999976 467779999999998654  467876532  22333 5779999


Q ss_pred             CceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCCCCcee
Q psy12425        547 GHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPISL  588 (591)
Q Consensus       547 ~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~~~~  588 (591)
                      ++.|.|+|+|.|..|.|.+|..+..++|.+.+|..+|..+..
T Consensus        84 ~t~Y~frV~A~n~~G~s~~S~~~~~~~T~~~~P~~~P~~v~~  125 (127)
T 1uey_A           84 YVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPS  125 (127)
T ss_dssp             TCEECCEEEEEESSCBCCCCSCCCCEECCCSSCSSCSSCCCC
T ss_pred             CCEEEEEEEEEeCCccCCccccccceEcCCCCCCCCCceeEe
Confidence            999999999999999999999876788998899888877754

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.67  E-value=2.1e-16  Score=117.84  Aligned_cols=100  Identities=21%  Similarity=0.296  Sum_probs=84.8

Q ss_pred             EEEecCCCCCCCCCeeeeecCCeeEEEeeccccCC---Ccc-eeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceE
Q psy12425        475 KIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDG---GSN-ITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQY  550 (591)
Q Consensus       475 ~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~---~~~-~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y  550 (591)
                      .+.+..+|.+|..+.+..++.++++|+|++|.+++   +.. |..|.|+........|..+.....+.+++.+|.|++.|
T Consensus         9 ~~~~~~pp~~P~~p~v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~~~~~v~~~~~t~~~v~gL~p~t~Y   88 (120)
T 1wfu_A            9 EPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLY   88 (120)
T ss_dssp             CCTTCCCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEE
T ss_pred             EEEeeCCCCCCCCceeceEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCCceEEEecCCccEEEECCCCCCCEE
Confidence            45666788899888888899999999999998776   666 99999996555668898886666678999999999999


Q ss_pred             EEEEEEEcCCcCCCCCCCcceEEe
Q psy12425        551 EFRVYAENVYGRSDPSTTSDLITT  574 (591)
Q Consensus       551 ~~~v~A~n~~G~~~~s~~~~~~~t  574 (591)
                      .|||+|.|..|.|++|..+.+.|.
T Consensus        89 ~frV~A~n~~G~s~~S~~~~~~T~  112 (120)
T 1wfu_A           89 KFRLKVTSPSGEYEYSPVVSVATT  112 (120)
T ss_dssp             EEEEEEECSSSCEEECCCEEEECC
T ss_pred             EEEEEEECCCCCCCCCccEeeEcC
Confidence            999999999999999998765443

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.67  E-value=5.3e-16  Score=147.67  Aligned_cols=214  Identities=15%  Similarity=0.137  Sum_probs=140.9

Q ss_pred             ceecccceEEEEEEEeCCcceeeee-EEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCC----C--eEEEeeCC
Q psy12425        354 SVYGVDADEYVCRAVNKGGVKSTKA-ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK----P--KITWYRDN  426 (591)
Q Consensus       354 ~~~~~d~g~y~c~a~n~~g~~~~~~-~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~----~--~v~W~~~~  426 (591)
                      +....+.|.|.|.+.|..+...... ......+|.   +|...  ........+.|.+.......    .  .|.|...+
T Consensus       301 ~S~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPs---aP~nl--~~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~  375 (536)
T 3fl7_A          301 HTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPS---APHYL--TAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCW  375 (536)
T ss_dssp             SEECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCC---CBSCE--EEECCTTSEEEEECCBSCCCSCSCCEEEEEEEEEC
T ss_pred             CCCCCCCCccEEEEeccccccCCCccccccccCCC---cccce--EEEecCCEEEEEEeCCcCCCCCceeEEEEEEEecc
Confidence            3456678999999999888664321 111122222   22211  11234566777776533211    1  34454321


Q ss_pred             eEee----eccceEE---EecCCeeEEEEeccCCCcceeEEEEEEcCCCc---cceEEEEEecCCCCCCCCCeeeeecCC
Q psy12425        427 EVIE----SGGHFHV---ETSERHAILTIRDASNVDTAPYRVVAENDLGM---DSAIVKIQISDRPDPPQFPTVEDIGHD  496 (591)
Q Consensus       427 ~~~~----~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~---~~~~~~~~v~~~p~~p~~~~~~~~~~~  496 (591)
                      ....    .......   ........++|.+|.+...|.|++.|.|..|.   ...+..+.+...|.+|..+.+...+.+
T Consensus       376 ~~~~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~Ps~~~~~~~s~t  455 (536)
T 3fl7_A          376 PESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTT  455 (536)
T ss_dssp             C-CCCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCCCEEEEEECCC-
T ss_pred             CCCCcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeecccCCCCCceeeccCC
Confidence            1100    0011111   11234678999999999999999999999997   446778888888889998888888899


Q ss_pred             eeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEE
Q psy12425        497 SLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT  573 (591)
Q Consensus       497 ~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~  573 (591)
                      ++.|+|++|. +.++.+.+|+|.|+...............+.++|.+|.|++.|.|+|+|.|.+|.|++|....+.|
T Consensus       456 SV~LsW~pP~-~~ng~I~~Y~V~y~~~~~~~~~~~v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~T  531 (536)
T 3fl7_A          456 SLSVSWSIPP-PQQSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT  531 (536)
T ss_dssp             CCEEEEECCT-TTTTTCSEEEEEEEEC--CCCCEEEEESSSEEECCSCCSSCEEEEEEEEECC---CEECCCEEEEC
T ss_pred             eEEEEEECCc-CCCCcccEEEEEEEECCCCceEEEEcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEEe
Confidence            9999999885 445589999999987765422233455667999999999999999999999999999998876544

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.67  E-value=1.3e-15  Score=112.94  Aligned_cols=87  Identities=23%  Similarity=0.344  Sum_probs=80.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.+.|+|++..+....++.+...+...+|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   94 (103)
T 3qp3_A           15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYA   94 (103)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEE
Confidence            56788999999999999999999999999999999888888888877888999999999999999999999999999999


Q ss_pred             EEEEecC
Q psy12425         82 TINITGL   88 (591)
Q Consensus        82 ~l~v~~~   88 (591)
                      .|.|...
T Consensus        95 ~l~V~~~  101 (103)
T 3qp3_A           95 TLDVTGG  101 (103)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9988754

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.66  E-value=9.9e-17  Score=119.09  Aligned_cols=97  Identities=39%  Similarity=0.672  Sum_probs=86.0

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec--eeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      .+|.+|..+.+..++.+++.|+|.+|..++|.++.+|.|+++..+...|..+.  ......+++.+|.+++.|.|||+|.
T Consensus         9 ~~p~~P~~P~v~~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   88 (112)
T 1bpv_A            9 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAK   88 (112)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEE
T ss_pred             CCCCCCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeecccCccCEEEECCCCCCCEEEEEEEEE
Confidence            67899999999999999999999998888888999999999988778898763  3456789999999999999999999


Q ss_pred             cCCcC-CCCCCCcceEEecc
Q psy12425        558 NVYGR-SDPSTTSDLITTYG  576 (591)
Q Consensus       558 n~~G~-~~~s~~~~~~~t~~  576 (591)
                      |..|. |++|..+..+++.+
T Consensus        89 N~~G~~s~~S~~~~~~t~~~  108 (112)
T 1bpv_A           89 NAAGAISPPSEPSDAITCRD  108 (112)
T ss_dssp             CTTSCEEEEEEEEEEECSCH
T ss_pred             ECCCCCCCCCCCCCCEEeCC
Confidence            99997 99998877776664

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.66  E-value=2.7e-15  Score=134.18  Aligned_cols=246  Identities=13%  Similarity=0.016  Sum_probs=142.6

Q ss_pred             eecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425          7 IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT   86 (591)
Q Consensus         7 v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~   86 (591)
                      +..|++|+|.|.+... . .|.|.+||.....       .  ...+|.|.+++..|+|.|+|.+   .|.......+.|.
T Consensus        18 ~~~G~~v~l~C~~~~~-~-~i~W~~~~~~~~~-------~--~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~v~   83 (306)
T 3d85_D           18 DAPGEMVVLTCDTPEE-D-GITWTLDQSSEVL-------G--SGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLH   83 (306)
T ss_dssp             SCCCEEEEEECSSSCC-S-SCEEEETTCCCCC-------E--ESSEEEEEECSGGGCEEEEEEE---TTEEEEEEEEEEE
T ss_pred             CccCCcEEEECCCCCC-C-cCEEEECCccccC-------C--CCCEEEEEecCcCCCceEEEee---CCcccceEEEEEE
Confidence            3479999999998743 3 8999999884321       1  2238999999999999999999   3455444444443


Q ss_pred             c-------------CCCCCCCCcceEEe--cC-ceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe-ecCcce--
Q psy12425         87 G-------------LPGPPIGPLDVSEI--TK-HTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST-TCHDTT--  147 (591)
Q Consensus        87 ~-------------~p~~p~~~~~~~~~--~~-~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~--  147 (591)
                      .             .+.+|.. ..+.-.  .. ..++++|.+...  ......|...+.. ....|..+.. ......  
T Consensus        84 ~~~~~~~~t~i~~~~~~pp~~-~~lsC~~~~~~~~~~C~W~pg~~--~~l~~~~~~~r~~-~~~~~~~C~~~~~~~~~c~  159 (306)
T 3d85_D           84 KKEDGIWSTDILKDQKEPKNK-TFLRCEAKNYSGRFTCWWLTTIS--TDLTFSVKSSRGS-SDPQGVTCGAATLSAERVR  159 (306)
T ss_dssp             EEETTEECCCSSCCCC---CC-CCCEEEBSSSSSEEEEEEEESCC--SSEEEEEEEEECS-SSCEEEEECCCEEEEEEEC
T ss_pred             eccCCcceeeeecccCCCCCC-CcceEEcCCcccCcEEEecCCCC--CceeEEEEEEecC-CCCcceECCCCCCCcccee
Confidence            2             2333332 234332  22 389999997653  2223345443321 1222333221 000011  


Q ss_pred             -------EE----EcCCcC----CcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecC-CeEEEEEe
Q psy12425        148 -------FI----VQGLTE----GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGG-DFVNLSWD  211 (591)
Q Consensus       148 -------~~----i~~l~~----~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~v~l~w~  211 (591)
                             +.    ...+-+    ...|.|+|.|.|..|.......+...    ....|.+|..+.+..... ..+.|+|.
T Consensus       160 v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~----~iVkPdPP~~l~~~~~~~~~~l~vsW~  235 (306)
T 3d85_D          160 GDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIR----DIIKPDPPKNLQLKPLKNSRQVEVSWE  235 (306)
T ss_dssp             --CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHH----HHBCCCCCEEEEEEEC----CEEEEEE
T ss_pred             ecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEeh----hcEecCCCceEEEEEecCCCcEEEEEc
Confidence                   11    122222    24799999999998854333211111    123677887777776433 78999999


Q ss_pred             cCCCCCC---cceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCc
Q psy12425        212 KPLDDGG---SRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS  279 (591)
Q Consensus       212 ~~~~~~~---~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~  279 (591)
                      +|...+.   .....|.|.++..+...|.....  ....++.+.   .+..|.++++|.+..|.+.+|..+
T Consensus       236 ~P~~~~~p~~~~~L~Y~vryr~~~~~~~~~~~~--~~~ts~~l~---~~~~Y~vqVRa~~~~~~G~WSeWS  301 (306)
T 3d85_D          236 YPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVF--TDKTSATVI---CRKNASISVRAQDRYYSSSWSEWA  301 (306)
T ss_dssp             CCTTSCSCTTTSCEEEEEEEECC------CEEE--ESSSEEEEC---CCSSCEEEEEEEESSSCCCCCCCE
T ss_pred             CCCCCcCCCceeeEEEEEEEEECCCCccEEEee--ccccEEEEe---CCCeEEEEEEeccCCCCCCCCCCC
Confidence            9754321   23478999999877655654422  244566664   489999999999988877777654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.66  E-value=3.1e-16  Score=109.41  Aligned_cols=80  Identities=18%  Similarity=0.321  Sum_probs=70.5

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      .++.+.+|+++.|.|.+.+ |.|.|.|+|||+.|..+.++++...+...+|.|.+++.+|+|.|+|.|.|.    ..++.
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~----~~~a~   78 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD----SRIFL   78 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT----CEEEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE----EEEEE
Confidence            4789999999999999965 888999999999999999999988888899999999999999999998654    45567


Q ss_pred             EEEec
Q psy12425         83 INITG   87 (591)
Q Consensus        83 l~v~~   87 (591)
                      |.|..
T Consensus        79 l~V~e   83 (84)
T 2lu7_A           79 VSVEE   83 (84)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            77754

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.66  E-value=4.1e-16  Score=116.97  Aligned_cols=101  Identities=29%  Similarity=0.428  Sum_probs=87.7

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec--eeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      .+|.+|.++++..++.+++.|+|.+|..+++.++.+|.|+++......|....  ......+++.+|.+++.|.|+|+|.
T Consensus         7 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   86 (111)
T 1x5y_A            7 GPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV   86 (111)
T ss_dssp             SCCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEE
T ss_pred             CCCcCCCCCEEEeccCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEccccCCcccEEEECCCCCCCEEEEEEEEE
Confidence            57888999999999999999999998877777799999999988878898763  2456789999999999999999999


Q ss_pred             cCCcCCCCCCCcceEEecccccc
Q psy12425        558 NVYGRSDPSTTSDLITTYGELLS  580 (591)
Q Consensus       558 n~~G~~~~s~~~~~~~t~~~~p~  580 (591)
                      |.+|.|.+|..+..+++.+.+|+
T Consensus        87 n~~G~s~~S~~~~~v~~~~~~P~  109 (111)
T 1x5y_A           87 NIAGRSEPATLLQPVTIRESGPS  109 (111)
T ss_dssp             ETTEECCCCCCSSCBCCCCCCCC
T ss_pred             cCCcCCCCccCCCCEEecCCCCC
Confidence            99999999998877777765554

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.66  E-value=6.1e-16  Score=112.80  Aligned_cols=93  Identities=28%  Similarity=0.383  Sum_probs=83.4

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCC--ceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      .||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....  ++.+...+...+|.|.++..+|+|.|+|.|.
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            46888888888899999999999999999999999999999887654  5677777888899999999999999999999


Q ss_pred             eCCcceeeeeEEEEe
Q psy12425        369 NKGGVKSTKAELIIM  383 (591)
Q Consensus       369 n~~g~~~~~~~l~v~  383 (591)
                      |..|.....+.|.|.
T Consensus        84 N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           84 NEFGSDSATVNIHIR   98 (100)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEEE
Confidence            999999888888875

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.66  E-value=2.2e-15  Score=110.04  Aligned_cols=87  Identities=22%  Similarity=0.290  Sum_probs=80.1

Q ss_pred             CceeeeecCCeEEEEEEeccC-CCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD-QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |.++.+.+|+++.|.|.+.|. |.+.+.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   87 (97)
T 2bk8_A            8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSY   87 (97)
T ss_dssp             CCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEE
Confidence            678999999999999999996 9999999999999988888888777777899999999999999999999999999998


Q ss_pred             EEEEEecC
Q psy12425         81 FTINITGL   88 (591)
Q Consensus        81 ~~l~v~~~   88 (591)
                      +.|.|.+.
T Consensus        88 ~~l~V~~~   95 (97)
T 2bk8_A           88 AELFVKGV   95 (97)
T ss_dssp             EEEEETTT
T ss_pred             EEEEEEec
Confidence            99988753

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.66  E-value=1.5e-15  Score=130.16  Aligned_cols=192  Identities=18%  Similarity=0.130  Sum_probs=136.1

Q ss_pred             cCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCC-cCCcEEEEEEEE
Q psy12425         87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGL-TEGQEYLFHVMA  165 (591)
Q Consensus        87 ~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~~~~y~~~~~a  165 (591)
                      .+|.+|.+ +.+......++.|+|.++...++  ...|.+.++......+...........+.+.+| .+++.|.|+|.|
T Consensus         6 ~pP~~P~~-l~~~~~~~~sv~l~W~~p~~~~~--~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~t~Y~~~V~A   82 (215)
T 1bqu_A            6 LPPEKPKN-LSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA   82 (215)
T ss_dssp             CCCCCCEE-EEEEEETTSCCEEEEECCSCCSS--CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEE
T ss_pred             CCCCCCEe-eEeEECCCCcEEEEcCCCCCCCC--CceEEEEEEEcCCCccccccccCCcceEEEcCCccccccEEEEEEE
Confidence            45555555 45566666899999999885543  368999987654322222222345678999999 899999999999


Q ss_pred             EccCCCCCCCCccCcccccCCCCCCCCCCCCeEEee--cCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEee-
Q psy12425        166 VNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQV--GGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA-  242 (591)
Q Consensus       166 ~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-  242 (591)
                      .|..|.+..... ...  ......|.+|..+.+...  ..+++.|+|..|...+ ..+.+|.|+++..+...|..+... 
T Consensus        83 ~n~~G~~~s~~~-~~~--~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~-~~i~~Y~v~y~~~~~~~~~~~~~~~  158 (215)
T 1bqu_A           83 ENALGKVTSDHI-NFD--PVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKS-VIILKYNIQYRTKDASTWSQIPPED  158 (215)
T ss_dssp             EETTEEEECCCE-EEC--GGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGG-TSCEEEEEEEEETTCSSCEECCGGG
T ss_pred             EecccCccCCcE-Eec--ccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCC-cceEEEEEEEccCCCCCceEecccc
Confidence            999987652211 111  111135666766666544  5689999999886544 368999999998877788765431 


Q ss_pred             -ecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEc
Q psy12425        243 -ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK  285 (591)
Q Consensus       243 -~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~  285 (591)
                       ......++|.+|.++..|.|+++|.|..|.+.++..+..+.+.
T Consensus       159 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~  202 (215)
T 1bqu_A          159 TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI  202 (215)
T ss_dssp             GCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEE
T ss_pred             ccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCccccc
Confidence             3356789999999999999999999999988766665554443

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.66  E-value=7.2e-16  Score=126.97  Aligned_cols=151  Identities=19%  Similarity=0.266  Sum_probs=106.1

Q ss_pred             ccceeccccEEEEEEEcC-CCCCeeEEecC-CccCC------------CC--CceEEEEeCCeEEEEEcceecccceEEE
Q psy12425        301 NANAIQNHNAQFQCTITG-CPKPTISWLKG-SREIT------------PS--ARHHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~-~~~~~------------~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      .+.+.+|+++.|.|.+.+ .+.+.|.|+++ +..+.            ..  .++.+  +....+|.|.+++..|+|.|+
T Consensus         8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y~   85 (180)
T 2dru_A            8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDYY   85 (180)
T ss_dssp             EEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEEE
Confidence            456789999999999854 44689999984 22110            11  23333  223347999999999999999


Q ss_pred             EEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEee-eccCCCeEEEeeCCeEeeeccceEEEecCCe
Q psy12425        365 CRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVIESGGHFHVETSERH  443 (591)
Q Consensus       365 c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  443 (591)
                      |.+.+.. .......|.|..++..   |.    . ...+..+.|.|.+ .+ |.|.+.|++++..+..         ...
T Consensus        86 C~v~~~~-~~~~~~~L~V~~~~~~---P~----i-~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~---------~~~  146 (180)
T 2dru_A           86 MRMLHET-EDQWKITMEVYEMVSK---PM----I-YWECSNATLTCEVLEG-TDVELKLYQGKEHLRS---------LRQ  146 (180)
T ss_dssp             EEEESSS-EEEEEEEEEEECCCCC---CE----E-EEEGGGTEEEEECSSC-TTCEEEEEETTEEEEE---------ESS
T ss_pred             EEEEcCC-eEEEEEEEEEECCCCC---CE----E-EecCCCEEEEEEeCCC-CCCEEEEEECCeECcC---------CCC
Confidence            9998876 5566677888764321   11    1 1234569999999 56 9999999999987741         123


Q ss_pred             eEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425        444 AILTIRDASNVDTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       444 ~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  474 (591)
                      ..|.+..  .+|.|.|+|.|.|..|..+...
T Consensus       147 ~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~  175 (180)
T 2dru_A          147 KTMSYQW--TNLRAPFKCKAVNRVSQESEME  175 (180)
T ss_dssp             SEEEEEC--SCCSSCEEEEEEETTEEEEEEE
T ss_pred             CEEEEEE--hhcCccEEEEEecCcCccccce
Confidence            4555533  7899999999999998765544

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.66  E-value=3.5e-15  Score=131.12  Aligned_cols=177  Identities=16%  Similarity=0.202  Sum_probs=116.0

Q ss_pred             cccceeccccEEEEEEEcCC--CCCeeEEecCCc--c---C--------------CCCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGC--PKPTISWLKGSR--E---I--------------TPSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~~~--~---~--------------~~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ..+.+.+|+.+.|.|.+.+.  +...+.|++...  .   +              ....++.+..+  ....+|.|.+++
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (253)
T 3liz_H            8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLK   87 (253)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            45678899999999999763  356899987321  1   0              11235555543  356789999999


Q ss_pred             cccceEEEEEEEeCC----cceeeeeEEEEe----cCCcccCCCCcccceeecCCCeEEEEEeeec-cCCC-eEEEeeCC
Q psy12425        357 GVDADEYVCRAVNKG----GVKSTKAELIIM----TAPKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKP-KITWYRDN  426 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~----g~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~-~v~W~~~~  426 (591)
                      .+|+|.|.|.+.+..    +.......|.|.    .+|.+...+   ....+..|+.+.|.|.+.+ .|.+ .+.|++++
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~---~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~  164 (253)
T 3liz_H           88 SEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLA---PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (253)
T ss_dssp             GGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEEC---C------CCEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             hhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEec---CCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCC
Confidence            999999999998862    223344567775    233332111   1123456999999999998 6766 89999998


Q ss_pred             eEeeeccceEEEecC---CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        427 EVIESGGHFHVETSE---RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       427 ~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      ..+...........+   ..+.|.|.....+| |.|+|.|.|..+.......+.+..
T Consensus       165 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~~  220 (253)
T 3liz_H          165 LSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPRD  220 (253)
T ss_dssp             BCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC-
T ss_pred             eecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCcc
Confidence            733111000000101   13678999999999 999999999998777777776653

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.66  E-value=7.5e-15  Score=127.00  Aligned_cols=178  Identities=14%  Similarity=0.214  Sum_probs=114.1

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--ccC----------------CCCCceEEEEe--CCeEEEEEcceec
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REI----------------TPSARHHIFAE--GDTYTLIINSVYG  357 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~----------------~~~~~~~~~~~--~~~~~l~i~~~~~  357 (591)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++..  ...                ....++.+..+  +...+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (232)
T 1dn0_B            8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (232)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence            456688999999999998765  6789998843  211                01245665543  3467999999999


Q ss_pred             ccceEEEEEEEeCC--cc----eeeeeEEEEecC----CcccCCCCcccceeecCC-CeEEEEEeeecc-CCC-eEEEee
Q psy12425        358 VDADEYVCRAVNKG--GV----KSTKAELIIMTA----PKFNVPPRFRDTAYFDKG-ENVVVKIPFTGY-PKP-KITWYR  424 (591)
Q Consensus       358 ~d~g~y~c~a~n~~--g~----~~~~~~l~v~~~----p~~~~~~~~~~~~~~~~g-~~~~l~c~~~~~-p~~-~v~W~~  424 (591)
                      +|+|.|.|.+.+..  +.    ......|.|...    |.+....   ....+..| +.+.|.|.+.+. |.+ .+.|++
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~---p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~  164 (232)
T 1dn0_B           88 ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLV---SCENSPSDTSSVAVGCLAQDFLPDSITFSWKY  164 (232)
T ss_dssp             GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEE---CC------CCSEEEEEEEEEEBSSCCEEEEEE
T ss_pred             ccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEec---cccccCCCCCcEEEEEEEEEEeCCCeEEEEEc
Confidence            99999999998422  21    223457777652    2222100   01123467 899999999886 776 999999


Q ss_pred             -CCeEeeeccce-EEEecC---CeeEEEEeccCC--CcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        425 -DNEVIESGGHF-HVETSE---RHAILTIRDASN--VDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       425 -~~~~~~~~~~~-~~~~~~---~~~~l~i~~~~~--~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                       +|..+.....+ .....+   ..+.|.|.....  +|.|.|+|.|.|..|.......+.+..
T Consensus       165 ~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~  227 (232)
T 1dn0_B          165 KNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA  227 (232)
T ss_dssp             TTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred             CCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence             88876431000 000111   135688888876  789999999999998876666555443

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.66  E-value=6.8e-15  Score=124.34  Aligned_cols=172  Identities=18%  Similarity=0.373  Sum_probs=124.1

Q ss_pred             cceEEec--CceEEEEecCCCCCCCcceeeEEEEEEecCC-CceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCC
Q psy12425         96 LDVSEIT--KHTCTLHWNPPKYDGGLKVTHYVVERRDISM-PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMG  172 (591)
Q Consensus        96 ~~~~~~~--~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~  172 (591)
                      +.+....  ..++.|+|.+|.   +..+..|.|.++.... ..|...........+.+.+|.+++.|.|+|.|.|..|.+
T Consensus         6 l~v~~v~~~~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~~   82 (201)
T 2ha1_A            6 VFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQ   82 (201)
T ss_dssp             EECCSCSCCSSCEEEEEECCS---STTCCEEEEEEEETTCSSCCEEEEECTTCCEEEECSCCTTEEEEEEEEEECTTSCE
T ss_pred             EEEEecCCCCCEEEEEEeCCC---CCCceEEEEEEEECCCCCceEEEecCCCccEEEecCCCCCCEEEEEEEEEeccccc
Confidence            3444555  789999999884   5688999999987654 567766666667899999999999999999999998887


Q ss_pred             CCCCc-------cCcccccCCCCCCCC-C----CCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEE
Q psy12425        173 PPLEG-------INPIKAKSPYDKPSP-P----GIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN  240 (591)
Q Consensus       173 ~~~~~-------~~~~~~~~~~~~p~~-~----~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~  240 (591)
                      .....       ............|.+ |    ..+.+.....+++.|+|.+|    ...+.+|.|.++......|....
T Consensus        83 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p----~~~i~~Y~v~~~~~~~~~~~~~~  158 (201)
T 2ha1_A           83 EVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYL  158 (201)
T ss_dssp             EEEEEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCS----CTTEEEEEEEEEETTTCCCCEEE
T ss_pred             CceeEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCC----CCCccEEEEEEEECCCCCceeEE
Confidence            54210       011111111011111 1    34567777888999999987    23789999999876544454433


Q ss_pred             eeecCCceeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425        241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSL  274 (591)
Q Consensus       241 ~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~  274 (591)
                      ........+.|.+|.++..|.|++.|.|..|.+.
T Consensus       159 ~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~  192 (201)
T 2ha1_A          159 DLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQS  192 (201)
T ss_dssp             EEETTCCEEEECSCCTTCEEEEEEEEEETTSCEE
T ss_pred             EcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcc
Confidence            3344568899999999999999999999998765

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.66  E-value=7.5e-15  Score=126.72  Aligned_cols=83  Identities=14%  Similarity=0.219  Sum_probs=55.0

Q ss_pred             ccccEEEEEEEcCCCCCeeEEecC-CccCCCCCceEEE--EeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        306 QNHNAQFQCTITGCPKPTISWLKG-SREITPSARHHIF--AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       306 ~g~~~~l~c~~~~~p~~~v~W~~~-~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      .|+.+.|.|.+.|.|.+.+.|+++ +..+.........  .++......+..+...|.|.|+|.|.|..|.....+.|.|
T Consensus       130 ~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v  209 (222)
T 3sbw_C          130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI  209 (222)
T ss_dssp             TTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEe
Confidence            455678889988888899999997 4444332222111  2222222333456779999999999999999999999988


Q ss_pred             ecCCcc
Q psy12425        383 MTAPKF  388 (591)
Q Consensus       383 ~~~p~~  388 (591)
                      ..+|..
T Consensus       210 ~~~p~~  215 (222)
T 3sbw_C          210 PELPLA  215 (222)
T ss_dssp             CCC---
T ss_pred             cCCccc
Confidence            766643

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.65  E-value=9.4e-16  Score=117.07  Aligned_cols=104  Identities=30%  Similarity=0.454  Sum_probs=88.4

Q ss_pred             EEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCC-CCceEEec---eeeeeEEEEcCcccCceEE
Q psy12425        476 IQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP-MSSWIRVG---NTRFTTMAITGLSPGHQYE  551 (591)
Q Consensus       476 ~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~-~~~~~~~~---~~~~~~~~i~~l~~~~~Y~  551 (591)
                      .....+|.+|.++.+..++.+++.|+|.+ ..+++.++.+|.|+++... ...|....   ......++|.+|.+++.|.
T Consensus        12 ~~~~~~P~~P~~~~~~~~~~~sv~l~W~p-~~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~p~t~Y~   90 (121)
T 1x4z_A           12 HGRLSPPEAPDRPTISTASETSVYVTWIP-RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYK   90 (121)
T ss_dssp             SSSCCCCCCCCCCEEEECCSSEEEEECCC-CCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEE
T ss_pred             cCcCCCCccCCCCEEEEccCCEEEEEEEC-CCCCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECCCCCCCEEE
Confidence            34457899999999999999999999995 4577788999999999876 57887663   3356799999999999999


Q ss_pred             EEEEEEcCCcCCCCCCCcceEEecccccc
Q psy12425        552 FRVYAENVYGRSDPSTTSDLITTYGELLS  580 (591)
Q Consensus       552 ~~v~A~n~~G~~~~s~~~~~~~t~~~~p~  580 (591)
                      |+|+|.|.+|.|++|..+..+++.+++|+
T Consensus        91 frV~A~n~~G~s~~S~~~~~v~~~~~~P~  119 (121)
T 1x4z_A           91 FRVRALNMLGESEPSAPSRPYVVSGSGPS  119 (121)
T ss_dssp             EEEEEEETTEECCCCCCCCCEECCSSCCC
T ss_pred             EEEEEEcCCCcCCCcCCCCCEEcCCCCCC
Confidence            99999999999999999888888776654

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.65  E-value=2.8e-13  Score=123.13  Aligned_cols=263  Identities=14%  Similarity=0.158  Sum_probs=148.8

Q ss_pred             CCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEc-C
Q psy12425        191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN-E  269 (591)
Q Consensus       191 ~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n-~  269 (591)
                      .+|..+.+.......+.|+|.+|.........+|.+.+..    .|....    ....+.+..+.++..|.++++|.. .
T Consensus         5 ~pP~nl~~~~~~~~~v~l~W~pP~~~~~~~~~~Y~v~~~~----~~~~~~----~~~~~~~~~~~~~~~y~~~V~a~~~~   76 (314)
T 3bpo_C            5 PPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGD----KQDKKI----APETRRSIEVPLNERICLQVGSQCST   76 (314)
T ss_dssp             CCCEEEEEEEETTTEEEEEEECCSSCCCSSCCCEEECCC------CCCEE----ESSSEEEEECCCSSCEEEEEEECC--
T ss_pred             CCCcceEEEeCCceEEEEEEcCCCCCCCCceEEEEEEecc----cCceEe----ccccEEEEEEcCCCcEEEEEEEEecC
Confidence            5677788887788899999999865533456678887654    222111    123456677888999999999954 3


Q ss_pred             CCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEE
Q psy12425        270 AGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT  349 (591)
Q Consensus       270 ~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  349 (591)
                      .|.+..+.. ....+..              ...........|.|.........+.|...... .....|.+        
T Consensus        77 ~~~g~~s~~-~~~~~~~--------------~~~~pp~~P~~l~c~~~~~~~~~c~W~~~~~~-~~~~~Y~l--------  132 (314)
T 3bpo_C           77 NESEKPSIL-VEKCISP--------------PEGDPESAVTELQCIWHNLSYMKCSWLPGRNT-SPDTNYTL--------  132 (314)
T ss_dssp             -------CC-EEEEECC--------------CCC-CCSSCEEEEEEEETTTEEEEEEECCC----CCCCEEE--------
T ss_pred             CCCCCCCcC-eeeeeec--------------CCCCCCCCCEeceEEECCCCeEEEEECCCCCC-CCCccEEE--------
Confidence            444433222 1111110              00111223456777776665667778653211 00111111        


Q ss_pred             EEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEe
Q psy12425        350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI  429 (591)
Q Consensus       350 l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~  429 (591)
                                    .|..  . +..                               -...|..                 
T Consensus       133 --------------~y~~--~-~~~-------------------------------~~~~C~~-----------------  147 (314)
T 3bpo_C          133 --------------YYWH--R-SLE-------------------------------KIHQCEN-----------------  147 (314)
T ss_dssp             --------------EEEE--S-SCS-------------------------------SCEECCC-----------------
T ss_pred             --------------EEEe--C-CCC-------------------------------ccccCcC-----------------
Confidence                          1110  0 000                               0001100                 


Q ss_pred             eeccceEEEecCCeeEEEEeccC----CCcceeEEEEEEcCCCccceE-EEEEec--CCCCCCCCCeeeeecCCeeEEEe
Q psy12425        430 ESGGHFHVETSERHAILTIRDAS----NVDTAPYRVVAENDLGMDSAI-VKIQIS--DRPDPPQFPTVEDIGHDSLALVW  502 (591)
Q Consensus       430 ~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~c~a~n~~g~~~~~-~~~~v~--~~p~~p~~~~~~~~~~~~v~l~W  502 (591)
                           +.  .......+.+..+.    ....|.+++.|.|..|....+ ..+.+.  ..|.+|.++.+. ...+++.|+|
T Consensus       148 -----~~--~~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~~~~~~~~~~v~P~pP~~l~~~-~~~~~l~lsW  219 (314)
T 3bpo_C          148 -----IF--REGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQW  219 (314)
T ss_dssp             -----EE--EETTEEEEEEECCC--------CCEEEEEEETTSCSCCEEEEECSSSSEECCCCEEEEEE-EETTEEEEEE
T ss_pred             -----ee--cCCCeEEEEECCCCccccceeEEEEEEEEEcCCCceecccEEEehhheEeeCCCCEEEEE-EcCCcEEEEE
Confidence                 00  00122333343333    245788999999998876433 334333  358999999887 6788999999


Q ss_pred             eccccCCCcceeeEEEEeeeCCCCceEEec--------------eeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        503 RAPIWDGGSNITNYIVEKREHPMSSWIRVG--------------NTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       503 ~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~--------------~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      ++|.. ....+..|+|.|+......|....              ......+.|.+|.|++.|.|+|+|.+.
T Consensus       220 ~~P~~-~~~~~l~Yev~y~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qVra~~~  289 (314)
T 3bpo_C          220 ENPQN-FISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTN  289 (314)
T ss_dssp             ECCTT-CCGGGEEEEEEEEC--CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEEEEEEC
T ss_pred             eCCCc-cCCceEEEEEEEEECCCCcceEEecccccccccccccccCCceEEEEccCCCCCEEEEEEEeeec
Confidence            98863 233468999999988777886421              145678999999999999999999986

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.65  E-value=3.1e-16  Score=120.06  Aligned_cols=103  Identities=28%  Similarity=0.451  Sum_probs=87.6

Q ss_pred             cCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeee---CCCCceEEec----eeeeeEEEEcCcccCceEE
Q psy12425        479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKRE---HPMSSWIRVG----NTRFTTMAITGLSPGHQYE  551 (591)
Q Consensus       479 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~---~~~~~~~~~~----~~~~~~~~i~~l~~~~~Y~  551 (591)
                      .++|.+|.++.+..++.+++.|+|.++. +++.+|.+|.|+++.   .....|..+.    ......+++.+|.|++.|.
T Consensus        15 ~~~P~~P~~l~~~~~~~~sv~l~W~p~~-~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~L~p~t~Y~   93 (124)
T 1wis_A           15 PELPGPPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYS   93 (124)
T ss_dssp             CCCCCCCEEEEEESCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEEC
T ss_pred             CCCCccCCCCEEEEecCCEEEEEEECCC-CCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeCCCCCCCEEE
Confidence            4678999999999999999999998664 677889999999987   3567887653    3456799999999999999


Q ss_pred             EEEEEEcCCcCCCCCCCcceEEeccccccCC
Q psy12425        552 FRVYAENVYGRSDPSTTSDLITTYGELLSGM  582 (591)
Q Consensus       552 ~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~  582 (591)
                      |||+|.|.+|.|++|..+..++|.+++|..+
T Consensus        94 frV~A~N~~G~s~~S~~~~~~~T~~~~P~~~  124 (124)
T 1wis_A           94 FRMRQVNIVGTSPPSQPSRKIQTLQSGPSSG  124 (124)
T ss_dssp             CCCEEECSSCBCCCCCCCCCEECCCSSCCCC
T ss_pred             EEEEEEECCccCCCcCCccceEcCCCCCCCC
Confidence            9999999999999999887788888777643

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.65  E-value=8.6e-16  Score=131.93  Aligned_cols=168  Identities=13%  Similarity=0.171  Sum_probs=117.6

Q ss_pred             CceeeeecCCeEEEEEEeccCC----CceEEEEE----------------CCEEeec-----CCceeEEE---eCCeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ----PMEVSLTK----------------NGRVVQS-----DDRFKFTV---LDDYIII   53 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~----------------~~~~~~~-----~~~~~~~~---~~~~~~l   53 (591)
                      |..+.+.+|+++.|.|.+.+.+    .+.+.|+|                ++..+..     ..|..+..   .....+|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            4578999999999999998876    46999998                5554432     23333321   1245689


Q ss_pred             EEcccCCCCceEEEEEEEcCCeeeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCC
Q psy12425         54 FIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM  133 (591)
Q Consensus        54 ~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~  133 (591)
                      .|.+++.+|+|.|+|.+.|..|.....+.|.|...|..+..+.......+..+.|.|....   +.+...+.+.+.....
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~---g~p~~~v~W~~~~~~~  163 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKE---GSLPLQFEWQKLSDSQ  163 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSB---CCSSCEEEEEECSTTC
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCC---CCCCCEEEEEECCCCC
Confidence            9999999999999999999999888889999998887665443334556788999998532   3333334443321111


Q ss_pred             CceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCC
Q psy12425        134 PHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMG  172 (591)
Q Consensus       134 ~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~  172 (591)
                      ..............+.|.++...+.+.|+|.|.|..|..
T Consensus       164 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~  202 (214)
T 3jz7_A          164 TMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD  202 (214)
T ss_dssp             CCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             ccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE
Confidence            100000012235589999999999999999999988764

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.64  E-value=7.2e-16  Score=130.80  Aligned_cols=164  Identities=12%  Similarity=0.051  Sum_probs=108.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCC-----ceEEEEE-CCEEeecCCceeEEEe---CCeEEEEEcccCCCCceEEEEEEEc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQP-----MEVSLTK-NGRVVQSDDRFKFTVL---DDYIIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~-----~~v~W~~-~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      +.++.+.+|+++.|.|.+.+.|.     +.+.|+| ++.......+..+...   .+..+|.|.+++.+|+|.|+|.+.|
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   88 (202)
T 3bp6_B            9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVIC   88 (202)
T ss_dssp             CSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEe
Confidence            35789999999999999998876     8999999 5554444455544322   1457999999999999999999999


Q ss_pred             CCeeeEEEEEEEEecCCCCCCCCcce-EEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEee--cCcceEE
Q psy12425         73 SSGSVSGTFTINITGLPGPPIGPLDV-SEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT--CHDTTFI  149 (591)
Q Consensus        73 ~~g~~~~~~~l~v~~~p~~p~~~~~~-~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~--~~~~~~~  149 (591)
                      ..|.....+.|.|...+..|..  .+ ....+..+.|.|....    .+...+.  |...+..........  .....+.
T Consensus        89 ~~~~~~~~~~l~V~~~~~~p~~--~~~~~~~g~~v~l~C~~~g----~P~p~v~--W~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
T 3bp6_B           89 GAAWDYKYLTVKVKASYMRIDT--RILEVPGTGEVQLTCQARG----YPLAEVS--WQNVSVPANTSHIRTPEGLYQVTS  160 (202)
T ss_dssp             TTEEEEEEEEEEEEBCCCCEEE--EEEECTTTCCEEEEEEEEE----BSCCEEE--ETTCCSCCEEEEEECTTSCEEEEE
T ss_pred             CCCcceEEEEEEecCCCCcccE--EEEecCCCCeEEEEEEccc----cCCceEE--EEeCCCCccCceeeCCCCCEEEEE
Confidence            9998888899999987655543  22 3345777888886411    1211222  211111111111111  1113344


Q ss_pred             EcCCcCCcEEEEEEEEEccCCCCC
Q psy12425        150 VQGLTEGQEYLFHVMAVNENGMGP  173 (591)
Q Consensus       150 i~~l~~~~~y~~~~~a~n~~g~~~  173 (591)
                      +..+...+.+.|+|.|.|..|...
T Consensus       161 i~~v~~~d~G~Y~C~a~N~~g~~~  184 (202)
T 3bp6_B          161 VLRLKPQPSRNFSCMFWNAHMKEL  184 (202)
T ss_dssp             EEEECCCTTCCEEEEEEETTTTEE
T ss_pred             EEEEEcCCCCEEEEEEEcCCcccc
Confidence            567778889999999999988643

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.64  E-value=1.5e-15  Score=133.26  Aligned_cols=174  Identities=13%  Similarity=0.207  Sum_probs=115.4

Q ss_pred             EEeeccccceeccccEEEEEEEcCCCCCeeEEecC--------------CccCC-C---CCceEEEEe-CCeEEEEEcce
Q psy12425        295 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--------------SREIT-P---SARHHIFAE-GDTYTLIINSV  355 (591)
Q Consensus       295 ~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--------------~~~~~-~---~~~~~~~~~-~~~~~l~i~~~  355 (591)
                      +...+..+.+.+|+.+.|.| ..+.+.+.+.|++.              +.... .   ..++.+..+ ....+|.|.++
T Consensus         5 v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v   83 (245)
T 4ei6_B            5 VLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPT   83 (245)
T ss_dssp             CEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSC
T ss_pred             eEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCC
Confidence            44455667789999999999 77788899999882              11110 1   145555442 34668999999


Q ss_pred             ecccceEEEEEEEeCC----cceeeeeEEEEec------CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEe
Q psy12425        356 YGVDADEYVCRAVNKG----GVKSTKAELIIMT------APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWY  423 (591)
Q Consensus       356 ~~~d~g~y~c~a~n~~----g~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~  423 (591)
                      +.+|+|.|.|.+.+..    +.......+.|..      +|.+....  .....+..|+.+.|.|.+.|. |.+ .+.|+
T Consensus        84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~--~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  161 (245)
T 4ei6_B           84 ALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFE--PSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (245)
T ss_dssp             CGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEEC--CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeC--CCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence            9999999999999642    2234455677764      23222111  011224558999999999984 444 89999


Q ss_pred             eCCeEeeeccceEEEe-------cCC----eeEEEEeccCCCc-ceeEEEEEEcCCCccc
Q psy12425        424 RDNEVIESGGHFHVET-------SER----HAILTIRDASNVD-TAPYRVVAENDLGMDS  471 (591)
Q Consensus       424 ~~~~~~~~~~~~~~~~-------~~~----~~~l~i~~~~~~~-~g~y~c~a~n~~g~~~  471 (591)
                      ++|..+..........       .+.    ...|.|.....+| .|.|+|.|.|......
T Consensus       162 ~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~  221 (245)
T 4ei6_B          162 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  221 (245)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence            9999886433221100       111    2457888887777 8999999999765544

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.64  E-value=6.4e-15  Score=129.42  Aligned_cols=166  Identities=14%  Similarity=0.201  Sum_probs=111.6

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--ccCC-----------------CCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REIT-----------------PSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|+++.  ..+.                 ...++.+..+  ....+|.|.+++
T Consensus        14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   93 (261)
T 2xqy_G           14 GAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLT   93 (261)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCC
Confidence            455688999999999999876  6889999853  2110                 0235555543  346789999999


Q ss_pred             cccceEEEEEEEeCCcc---eeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEeeCCe
Q psy12425        357 GVDADEYVCRAVNKGGV---KSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWYRDNE  427 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~~~  427 (591)
                      .+|+|.|.|.+.|..+.   ......|.|..    +|.+...+.   ...+..|+.+.|.|.+.+. |.+ .|.|++++.
T Consensus        94 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p---~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~  170 (261)
T 2xqy_G           94 SEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAP---VCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  170 (261)
T ss_dssp             GGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECC---CCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             cccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCC---CccccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence            99999999999986431   12345677764    233321111   1124679999999999875 766 999999987


Q ss_pred             EeeeccceEEEecC---CeeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        428 VIESGGHFHVETSE---RHAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       428 ~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      .+.......+...+   ....|.|.....+| |.|+|.|.|....
T Consensus       171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          171 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             cCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            64211111111111   24678999888888 9999999997554

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.64  E-value=3.5e-15  Score=130.32  Aligned_cols=173  Identities=12%  Similarity=0.189  Sum_probs=114.6

Q ss_pred             EeeccccceeccccEEEEEEEcCCCCCeeEEecCCcc--------------C---CCCCceEEEEe-CCeEEEEEcceec
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE--------------I---TPSARHHIFAE-GDTYTLIINSVYG  357 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~--------------~---~~~~~~~~~~~-~~~~~l~i~~~~~  357 (591)
                      ...+..+.+.+|+.+.|.|.+.+ +.+.+.|++....              .   ....++.+..+ ....+|.|.+++.
T Consensus         6 ~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~   84 (240)
T 3q5y_A            6 VQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALEL   84 (240)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             ccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCCh
Confidence            34445677899999999999876 7789999982210              0   11235555442 3467899999999


Q ss_pred             ccceEEEEEEEeCCc---ceeeeeEEEEec------CCcccCCCCcccceeecCCCeEEEEEeeec-cCCC-eEEEeeCC
Q psy12425        358 VDADEYVCRAVNKGG---VKSTKAELIIMT------APKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKP-KITWYRDN  426 (591)
Q Consensus       358 ~d~g~y~c~a~n~~g---~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~-~v~W~~~~  426 (591)
                      +|+|.|.|.+.+..+   .......+.|..      +|.+...+  .....+..|+.+.|.|.+.+ .|.+ .+.|+++|
T Consensus        85 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~--~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g  162 (240)
T 3q5y_A           85 EDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFE--PSKAEIANKQKATLVCLARGFFPDHVELSWWVNG  162 (240)
T ss_dssp             GGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEEC--CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             hHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeC--CchhhcccCCceEEEEEEeeEECCCeEEEEEECC
Confidence            999999999984322   223445666663      22222111  01123456899999999998 5656 79999999


Q ss_pred             eEeeeccceE---EEecCC----eeEEEEeccCCCc-ceeEEEEEEcCCCccc
Q psy12425        427 EVIESGGHFH---VETSER----HAILTIRDASNVD-TAPYRVVAENDLGMDS  471 (591)
Q Consensus       427 ~~~~~~~~~~---~~~~~~----~~~l~i~~~~~~~-~g~y~c~a~n~~g~~~  471 (591)
                      ..+.......   ....+.    .+.|.|.....+| .|.|+|.|.|......
T Consensus       163 ~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~  215 (240)
T 3q5y_A          163 KEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE  215 (240)
T ss_dssp             EEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             EECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCc
Confidence            9886433211   111122    2458888888888 7799999999866544

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.64  E-value=1.3e-14  Score=124.82  Aligned_cols=166  Identities=14%  Similarity=0.231  Sum_probs=111.7

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCCcc--C------C-------------CCCceEEEEe--CCeEEEEEcc
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGSRE--I------T-------------PSARHHIFAE--GDTYTLIINS  354 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~~~--~------~-------------~~~~~~~~~~--~~~~~l~i~~  354 (591)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++....  .      .             ...++.+..+  ....+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (221)
T 3m8o_H            8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS   87 (221)
T ss_dssp             SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence            345688999999999998743  678999873211  0      0             1245555543  3566899999


Q ss_pred             eecccceEEEEEEEeCC--cceeeeeEEEEec----CCccc-CCCCcccceeecCCCeEEEEEeeec-cCC--CeEEEee
Q psy12425        355 VYGVDADEYVCRAVNKG--GVKSTKAELIIMT----APKFN-VPPRFRDTAYFDKGENVVVKIPFTG-YPK--PKITWYR  424 (591)
Q Consensus       355 ~~~~d~g~y~c~a~n~~--g~~~~~~~l~v~~----~p~~~-~~~~~~~~~~~~~g~~~~l~c~~~~-~p~--~~v~W~~  424 (591)
                      ++.+|+|.|.|.+.+..  ........|.|..    +|.+. ..+    ... ..|+.+.|.|.+.+ .|.  +.+.|++
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~----~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~  162 (221)
T 3m8o_H           88 LKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSL----CST-QPDGNVVIACLVQGFFPQEPLSVTWSE  162 (221)
T ss_dssp             CCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEEC----CSC-CCTTEEEEEEEEEEEBSSCSEEEEESC
T ss_pred             CCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecC----ccc-ccCCCEEEEEEEEeeECCCCEEEEEEE
Confidence            99999999999999874  2223445666653    22221 111    111 57999999999998 675  4899999


Q ss_pred             CCeEeeeccceEEE-ecC----CeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        425 DNEVIESGGHFHVE-TSE----RHAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       425 ~~~~~~~~~~~~~~-~~~----~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      +|..+......... ..+    ..+.|.|.....+|.|.|+|.|.|..+..
T Consensus       163 ~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          163 SGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             CSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             CCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            98766321111111 111    12468999999999999999999987654

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.64  E-value=2.9e-15  Score=113.06  Aligned_cols=91  Identities=26%  Similarity=0.421  Sum_probs=80.0

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeec-CCceeEEEeCC-eEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQS-DDRFKFTVLDD-YIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~-~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.+.|+|++..+.. ..++.+...+. ..+|.|.+++.+|+|.|+|.|.|..|....
T Consensus        22 p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  101 (116)
T 2kkq_A           22 PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTC  101 (116)
T ss_dssp             CCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEE
T ss_pred             CCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEE
Confidence            6788999999999999999999999999999999875 46666655443 458999999999999999999999999999


Q ss_pred             EEEEEEecCCCCC
Q psy12425         80 TFTINITGLPGPP   92 (591)
Q Consensus        80 ~~~l~v~~~p~~p   92 (591)
                      .+.|.|...|.++
T Consensus       102 ~~~l~V~~~p~~~  114 (116)
T 2kkq_A          102 NTRLDVTARPNQT  114 (116)
T ss_dssp             EEEEEEECCSCCC
T ss_pred             EEEEEEeCCCCCC
Confidence            9999999887654

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.64  E-value=5.8e-16  Score=136.22  Aligned_cols=259  Identities=12%  Similarity=0.085  Sum_probs=94.0

Q ss_pred             eEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC
Q psy12425        197 VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS  276 (591)
Q Consensus       197 ~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s  276 (591)
                      .+....|++++|+|.... +.. ...++........      ..........+.+.++..+  +.|+|++... |.  ..
T Consensus         8 ~~~V~~G~sv~l~Cs~~c-~~p-~~~~~~t~l~~~~------~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~-~~--~~   74 (291)
T 1mq8_A            8 KVILPRGGSVLVTCSTSC-DQP-KLLGIETPLPKKE------LLLPGNNRKVYELSNVQED--SQPMCYSNCP-DG--QS   74 (291)
T ss_dssp             EEEECTTCEEEEEEEECC-SSC-SEEEEECSSCCCC------CCCSCSSEEEEEEESCCSC--CCCEEEEECS-SC--EE
T ss_pred             ccEEcCCCeEEEEEeCCC-CCC-ccceEEecCCCcc------cccCCCceEEEEEEecccC--CeEEEEEEcC-Cc--cE
Confidence            345678999999999853 222 2222221111000      0000011234677777754  4699998543 32  22


Q ss_pred             CCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCC-C--eeEEecCCccCCCCCceEEEEeCCeEEEEEc
Q psy12425        277 SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK-P--TISWLKGSREITPSARHHIFAEGDTYTLIIN  353 (591)
Q Consensus       277 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~-~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~  353 (591)
                      .....+.+..+  +..+.+.  +....+.+|+.++|+|.+.+..+ .  .|.|++++..+.....   .......+|.+.
T Consensus        75 ~~~v~l~V~~~--P~~v~I~--~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~  147 (291)
T 1mq8_A           75 TAKTFLTVYWT--PERVELA--PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA---VGEPAEVTTTVL  147 (291)
T ss_dssp             EEECEEEECBC--CSCCCBC--CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECC
T ss_pred             EEEEEEEEecC--CCCCEEe--cCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC---CCCCceEEEEee
Confidence            23344555422  2233332  23345788999999999988544 3  5899999876642210   011123356666


Q ss_pred             ceecccceEEEEEEEeCCcc--------eeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCC---eEEE
Q psy12425        354 SVYGVDADEYVCRAVNKGGV--------KSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKP---KITW  422 (591)
Q Consensus       354 ~~~~~d~g~y~c~a~n~~g~--------~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~---~v~W  422 (591)
                      ....++.+.|+|+|.|..+.        .+....|.|.++|........  ...+.+|+.+.|.|.+.|.+++   .+.|
T Consensus       148 ~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~--p~~l~eG~~v~l~C~~~g~~P~~~~~v~w  225 (291)
T 1mq8_A          148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS--PRVLEVDTQGTVVCSLDGLFPVSEAQVHL  225 (291)
T ss_dssp             CSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------------------------
T ss_pred             eeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecC--CcCccCCCeEEEEEEcCCCCCCcccEEEE
Confidence            66667777999999997663        245567888887643221111  1246789999999999998654   6999


Q ss_pred             eeCCeEeeeccceEEEecCCeeEEEEecc---CC--CcceeEEEEEEcCCCccceEEEEEecCCCC
Q psy12425        423 YRDNEVIESGGHFHVETSERHAILTIRDA---SN--VDTAPYRVVAENDLGMDSAIVKIQISDRPD  483 (591)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~--~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~  483 (591)
                      +++|+.+....    ...++  .+++..+   ..  ++.|.|+|.|.|..........+.|.+.|.
T Consensus       226 ~~~g~~l~~~~----~~~g~--~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~  285 (291)
T 1mq8_A          226 ALGDQRLNPTV----TYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA  285 (291)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             EECCEecCcee----eecCC--eEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCC
Confidence            99998876421    11122  2222222   23  457888899987655556666777766543

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.64  E-value=3.4e-15  Score=109.73  Aligned_cols=86  Identities=21%  Similarity=0.334  Sum_probs=79.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|+|..+....++.+...+...+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus        13 ~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~   92 (99)
T 3puc_A           13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC   92 (99)
T ss_dssp             CCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            56789999999999999999999999999999999888888888877888999999999999999999999999998888


Q ss_pred             EEEEec
Q psy12425         82 TINITG   87 (591)
Q Consensus        82 ~l~v~~   87 (591)
                      .|.|..
T Consensus        93 ~l~V~~   98 (99)
T 3puc_A           93 KLTIKA   98 (99)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            888863

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.64  E-value=5.4e-15  Score=126.29  Aligned_cols=181  Identities=13%  Similarity=0.051  Sum_probs=113.1

Q ss_pred             eEEeecC--CeEEEEEecCCCCCCcceEEEEE--EeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCC
Q psy12425        197 VVTQVGG--DFVNLSWDKPLDDGGSRIQGYWI--DKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGL  272 (591)
Q Consensus       197 ~~~~~~~--~~v~l~w~~~~~~~~~~~~~y~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~  272 (591)
                      .+....|  ..++|.|.... + ...+.+|.-  ...........    .......|.|.++...|.|.|+|.|.|..+.
T Consensus        16 ~v~v~eG~~~~v~L~C~~~~-p-~~~v~w~~~~~~g~~~~~~~~~----~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~   89 (213)
T 2x1w_L           16 VVYITENKNKTVVIPCLGSI-S-NLNVSLCARYPEKRFVPDGNRI----SWDSKKGFTIPSYMISYAGMVFCEAKINDES   89 (213)
T ss_dssp             EEEECCSTTCEEEECCCBSS-T-TCCEEEEEETTTEEECCCSSSC----EEETTTEEEEEGGGTTTCSEEEEEEC----C
T ss_pred             EEEEecCCCccEEEeeccCC-C-CcEEEEEhhcCCCccccCCCcc----cccCCccEEEccCChhcCceEEEEEEECCee
Confidence            4455668  89999998753 2 233444332  11111111101    1123467999999999999999999985332


Q ss_pred             CCCCCCcceEEEcCCCccCCCeEEeeccc-cceeccccEEEEEEEcCCCC--CeeEEecCCccCCCCCc-eEEEE-----
Q psy12425        273 SLPSSASNSVQIKDPMAAKAPEIIVPLRN-ANAIQNHNAQFQCTITGCPK--PTISWLKGSREITPSAR-HHIFA-----  343 (591)
Q Consensus       273 ~~~s~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~c~~~~~p~--~~v~W~~~~~~~~~~~~-~~~~~-----  343 (591)
                       . .+....+.+..   ..+|.+...+.. +.+.+|+.+.|.|.+.|.|.  +.+.|++++..+..... .....     
T Consensus        90 -~-~s~~~~l~v~~---~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~  164 (213)
T 2x1w_L           90 -Y-QSIMYIVVVVG---YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS  164 (213)
T ss_dssp             -E-ECCCEEEEECB---CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSC
T ss_pred             -E-EEEEEEEEEeC---CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCc
Confidence             1 12224444431   234445444433 47899999999999998553  57999998876543211 00000     


Q ss_pred             --eCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEecCCcc
Q psy12425        344 --EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF  388 (591)
Q Consensus       344 --~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~  388 (591)
                        .....+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+
T Consensus       165 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE  211 (213)
T ss_dssp             SCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred             cceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence              111347999999999999999999999999999999999887764

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.64  E-value=3.9e-15  Score=109.39  Aligned_cols=86  Identities=19%  Similarity=0.288  Sum_probs=76.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEE-EeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFT-VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|+|..+....++.+. ..++..+|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~   91 (99)
T 1g1c_A           12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH   91 (99)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEE
Confidence            56788999999999999999999999999999999887766544 35666799999999999999999999999999998


Q ss_pred             EEEEEec
Q psy12425         81 FTINITG   87 (591)
Q Consensus        81 ~~l~v~~   87 (591)
                      +.|.|..
T Consensus        92 ~~l~V~~   98 (99)
T 1g1c_A           92 AFLLVQA   98 (99)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            8888864

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.64  E-value=2.5e-15  Score=110.65  Aligned_cols=87  Identities=29%  Similarity=0.395  Sum_probs=76.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|+|..+....+..+.. .+...+|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus        12 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (100)
T 2kdg_A           12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT   91 (100)
T ss_dssp             CCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEE
Confidence            678899999999999999999999999999999998776554443 4445799999999999999999999999999999


Q ss_pred             EEEEEecC
Q psy12425         81 FTINITGL   88 (591)
Q Consensus        81 ~~l~v~~~   88 (591)
                      +.|.|...
T Consensus        92 ~~l~V~~~   99 (100)
T 2kdg_A           92 VQLDVLAK   99 (100)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEec
Confidence            99998764

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.64  E-value=2.5e-14  Score=119.21  Aligned_cols=172  Identities=22%  Similarity=0.314  Sum_probs=126.9

Q ss_pred             EecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEE
Q psy12425         85 ITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVM  164 (591)
Q Consensus        85 v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~  164 (591)
                      +...|.+|.. +.+......++.|+|.+|.   + .+.+|.+.+.... ..+...........+.+.+|.+++.|.|+|.
T Consensus         3 ~~t~p~~P~~-l~~~~~~~~sv~l~W~~p~---~-~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   76 (186)
T 1qr4_A            3 AGTDLDNPKD-LEVSDPTETTLSLRWRRPV---A-KFDRYRLTYVSPS-GKKNEMEIPVDSTSFILRGLDAGTEYTISLV   76 (186)
T ss_dssp             -----CCCEE-EEEESCCSSEEEEEEECCS---S-CCSEEEEEEECTT-CCEEEEEECTTCSEEEEESCCSSCEEEEEEE
T ss_pred             ccCCCcCCCc-eEEEecCCCEEEEEEeCCC---C-CccEEEEEEEeCC-CCeeEEECCCCCCEEEECCCCCCCEEEEEEE
Confidence            3455677766 5677778899999999875   2 6789999998543 3444444455678899999999999999999


Q ss_pred             EEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeec
Q psy12425        165 AVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC  244 (591)
Q Consensus       165 a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~  244 (591)
                      |.|..|.+....    +....   .|.+|..+.+.....+++.|+|.++.    ..+.+|.|.++..+...+..... ..
T Consensus        77 a~~~~~~s~~~~----~~~~t---~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~-~~  144 (186)
T 1qr4_A           77 AEKGRHKSKPTT----IKGST---VVGSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTV-DG  144 (186)
T ss_dssp             EESSSCBCCCEE----EEEEC---CCCCCSCEEEESCCSSCEEEEECCCS----SCCSEEEEEEEETTCCCCEEEEE-ET
T ss_pred             EEcCCccCCCEE----EEEEC---CCCCCCccEEEEeCCCEEEEEEECCC----CcccEEEEEEEeCCCCCceEEEc-CC
Confidence            999766554321    11122   46677788888888999999999863    35889999998876544444433 24


Q ss_pred             CCceeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425        245 APSQINIPNLIEGRQYEFRVYAQNEAGLSL  274 (591)
Q Consensus       245 ~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~  274 (591)
                      ....+.|.+|.++..|.|++.|.|..|.+.
T Consensus       145 ~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~  174 (186)
T 1qr4_A          145 SKTRTKLVKLVPGVDYNVNIISVKGFEESE  174 (186)
T ss_dssp             TCCEEEECSCCSSCEEEEEEEEEETTEECC
T ss_pred             CcCEEEEcCCCCCCEEEEEEEEEcCCCcCc
Confidence            668899999999999999999999877654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.64  E-value=3.4e-15  Score=106.91  Aligned_cols=81  Identities=7%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.+ +.+.+.|+|||..|..+.++++...+...+|.|.+++.+|+|.|+|.|.|.    ..+.
T Consensus        12 ~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~~sa   86 (93)
T 1waa_A           12 LYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT----KSAA   86 (93)
T ss_dssp             CCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE----EEEE
T ss_pred             CcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC----cEEE
Confidence            56889999999999999986 457899999999999888999888888889999999999999999999874    3456


Q ss_pred             EEEEec
Q psy12425         82 TINITG   87 (591)
Q Consensus        82 ~l~v~~   87 (591)
                      .|.|..
T Consensus        87 ~L~V~~   92 (93)
T 1waa_A           87 NLKVKE   92 (93)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            666653

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2.5e-16  Score=119.88  Aligned_cols=105  Identities=37%  Similarity=0.637  Sum_probs=92.7

Q ss_pred             CCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe-ceeeeeEEEEcCcc
Q psy12425        467 LGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMAITGLS  545 (591)
Q Consensus       467 ~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~l~  545 (591)
                      .|..+..+.+.+.++|.+|.++.+..++.+++.|+|++|..+++.++.+|.|+++......|..+ .......+++.+|.
T Consensus         3 ~G~~~~~~~v~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~v~~L~   82 (120)
T 2yux_A            3 SGSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATITELV   82 (120)
T ss_dssp             CCCCCCCCCCCCCCCCCCCSCEEEEEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTTCCCEEEESSCCSSCCEECCCC
T ss_pred             CCcccEEEEEEeecCCCcCCCCEEEEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCCCceEEeeecCCcCEEEECCCC
Confidence            46777888888899999999999999999999999999887777889999999998887889876 34567789999999


Q ss_pred             cCceEEEEEEEEcCCcCCCCCCCcce
Q psy12425        546 PGHQYEFRVYAENVYGRSDPSTTSDL  571 (591)
Q Consensus       546 ~~~~Y~~~v~A~n~~G~~~~s~~~~~  571 (591)
                      +++.|.|+|+|.|..|.|++|..+..
T Consensus        83 p~t~Y~frV~A~n~~G~s~~S~~s~~  108 (120)
T 2yux_A           83 IGNEYYFRVFSENMCGLSEDATMTKE  108 (120)
T ss_dssp             SSEEEEEEECCCSSSCSCSSCEECSS
T ss_pred             CCCEEEEEEEEeeCCcCCCCccCcCC
Confidence            99999999999999999999886544

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.63  E-value=1.4e-15  Score=131.56  Aligned_cols=163  Identities=9%  Similarity=0.101  Sum_probs=104.0

Q ss_pred             eeccccEEEEEEEcCC---CCC-eeEEecCCccCCCCCce-EEEEeC----CeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        304 AIQNHNAQFQCTITGC---PKP-TISWLKGSREITPSARH-HIFAEG----DTYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       304 ~~~g~~~~l~c~~~~~---p~~-~v~W~~~~~~~~~~~~~-~~~~~~----~~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      +.+|+.+.|.|.+.+.   |.+ .|.|++++..+...... .....+    ...+|.|.++..+|.|.|+|.|.|..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            6799999999999876   765 89999987655432110 011111    12379999999999999999999988764


Q ss_pred             eeeeEE----EEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCCeEeeeccceEEE-ecCC----e
Q psy12425        375 STKAEL----IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDNEVIESGGHFHVE-TSER----H  443 (591)
Q Consensus       375 ~~~~~l----~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~-~~~~----~  443 (591)
                      .....+    .+..+|.+...+...   ....|..+.|.|.+.|. |. ..|.|+++|..+......... ..+.    .
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~---~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~  185 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPK---EEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLY  185 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCG---GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE
T ss_pred             CcEEEEecCCCCCcCCEEEEECCCh---HHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEE
Confidence            322222    233344443222111   11347889999999984 54 489999999987532221111 1111    1


Q ss_pred             eEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        444 AILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       444 ~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                      ..|.|.....++.|.|+|.|.|....
T Consensus       186 s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          186 SKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEChhhcCCCCEEEEEEECCCCC
Confidence            23444444445689999999998654

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=114.02  Aligned_cols=92  Identities=20%  Similarity=0.268  Sum_probs=80.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeec-CCceeEEEe-CCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQS-DDRFKFTVL-DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|++..+.. ..++.+... +....|.|.+++.+|+|.|+|.|.|..|....
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~   94 (110)
T 2dm2_A           15 LKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISC   94 (110)
T ss_dssp             CCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEE
T ss_pred             CcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEE
Confidence            5678999999999999999999999999999999876 456666654 34468999999999999999999999999988


Q ss_pred             EEEEEEecCCCCCC
Q psy12425         80 TFTINITGLPGPPI   93 (591)
Q Consensus        80 ~~~l~v~~~p~~p~   93 (591)
                      .+.|.|...|.+|.
T Consensus        95 ~~~l~V~~~~~~P~  108 (110)
T 2dm2_A           95 TGRLMVQAVNSGPS  108 (110)
T ss_dssp             CCCEEEECCSCCSS
T ss_pred             EEEEEEECCCCCCC
Confidence            89999998887764

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.63  E-value=2.6e-15  Score=111.22  Aligned_cols=99  Identities=24%  Similarity=0.230  Sum_probs=81.7

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      .+|.+|..+.+..++.+++.|+|++|.. +|..|.+|+|+++... ..|........+.+.|.+|.+++.|.|+|+|.|.
T Consensus         6 ~~P~~P~~~~~~~~s~~sv~l~W~~p~~-~g~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~   83 (106)
T 1x4x_A            6 SGPDQCKPPQVTCRSATCAQVNWEVPLS-NGTDVTEYRLEWGGVE-GSMQICYCGPGLSYEIKGLSPATTYYCRVQALSV   83 (106)
T ss_dssp             CSCCCCCCCCCEEEETTEEEEECCCCSC-SSSCCCEEEEEEESST-TSCCEEEEESCSEEEEESCCSSCEEEEEEEEECS
T ss_pred             CCcCCCCCCEEEEcCCCEEEEEEcCCCC-CCCcceEEEEEEEcCC-CceEEEEeCCcceEEEcCCCCCCEEEEEEEEEcC
Confidence            5789999999999999999999998874 6678999999998665 3444444455678999999999999999999999


Q ss_pred             CcCCCCCCCcceEEeccccccC
Q psy12425        560 YGRSDPSTTSDLITTYGELLSG  581 (591)
Q Consensus       560 ~G~~~~s~~~~~~~t~~~~p~~  581 (591)
                      +|.|++|.... ++|.+.+|..
T Consensus        84 ~G~g~~S~~v~-~~T~~~~P~~  104 (106)
T 1x4x_A           84 VGAGPFSEVVA-CVTPPSSGPS  104 (106)
T ss_dssp             SCCCCBCCCEE-EECCCCCSCC
T ss_pred             CcCCCCcCCEE-EECCCCCcCC
Confidence            99999998764 4666656554

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.63  E-value=7e-14  Score=132.62  Aligned_cols=320  Identities=16%  Similarity=0.161  Sum_probs=168.3

Q ss_pred             cCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCC-----cceEEEE
Q psy12425        151 QGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGG-----SRIQGYW  225 (591)
Q Consensus       151 ~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~-----~~~~~y~  225 (591)
                      ..+.....|.|++.|.|..|........       ....|.+|..+.+.... +.+.|+|.+|.....     .....|.
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~v~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~  148 (419)
T 2gys_A           77 QSFVVTDVDYFSFQPDRPLGTRLTVTLT-------QHVQPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFE  148 (419)
T ss_dssp             SCCCTTCEEEEEEEESSCCCEEEEEEGG-------GSBCCCCCEEEEEEEET-TEEEEEEECCC-----CCSCGGGEEEE
T ss_pred             cceeeecccEEEEeCCccccccceEcHH-------HcccCCCCCceEEEecC-CeEEEEECCCccccccchhccCceEEE
Confidence            4455567899999997665542221111       12367778788777665 699999999754321     2467899


Q ss_pred             EEeeecCCCccEEEEeeecCCceeeec--CcccCCcEEEEEEEEcCC---CCCCCCCCcceEEEcCCCccCCCeEEeecc
Q psy12425        226 IDKHEVGSDAWQRVNVAICAPSQINIP--NLIEGRQYEFRVYAQNEA---GLSLPSSASNSVQIKDPMAAKAPEIIVPLR  300 (591)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~--~l~~~~~~~y~c~a~n~~---g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~  300 (591)
                      |.++..+ ..|............+.+.  +|.++..|.++++|.+..   +.+.++..+..+.+..+...          
T Consensus       149 v~yr~~~-~~w~~~~~~~~~~~~~~~~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~----------  217 (419)
T 2gys_A          149 VVYKRLQ-DSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGD----------  217 (419)
T ss_dssp             EEEEETT-SCSTTCEEEEESSSEEEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCC----------
T ss_pred             EEEccCC-CChhheeeecccceEEEechhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeeccccc----------
Confidence            9999876 6676554432234444555  899999999999999864   34566655555554422111          


Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCC--cceeeee
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG--GVKSTKA  378 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~--g~~~~~~  378 (591)
                           ....-.|.|...+.....+.|...+ .+.....+.                        .......  |....  
T Consensus       218 -----~~~p~~l~c~~~~~~~l~c~W~~~~-~~~~~~~y~------------------------l~y~~~~~~g~~~~--  265 (419)
T 2gys_A          218 -----EAQPQNLECFFDGAAVLSCSWEVRK-EVASSVSFG------------------------LFYKPSPDAGSAVL--  265 (419)
T ss_dssp             -----TTSCEEEEEEECSSSEEEEEEEEEH-HHHTTCCEE------------------------EEEECC-----CCC--
T ss_pred             -----cCCCceEEEEECCceEEEeEEECCC-CCCCceeEE------------------------EEEEecCccccccC--
Confidence                 1223456777665555567786531 111111111                        1111000  00000  


Q ss_pred             EEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCccee
Q psy12425        379 ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAP  458 (591)
Q Consensus       379 ~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~  458 (591)
                                       .         -.-.|...-         ..+    ....+.    .....+.+.++.....|.
T Consensus       266 -----------------~---------~~~~C~~~~---------~~~----~~~~~~----~~~c~~~~~~l~~~~~y~  302 (419)
T 2gys_A          266 -----------------L---------REEECSPVL---------REG----LGSLHT----RHHCQIPVPDPATHGQYI  302 (419)
T ss_dssp             -----------------C---------CCEECCCEE---------EEC----CTTTEE----EEEEEEECSCTTTCCEEE
T ss_pred             -----------------c---------ccccCCCcc---------ccc----CCCcce----eEEeEEECccCCccCEEE
Confidence                             0         000110000         000    000000    012234444454444555


Q ss_pred             EEEEEEcCCCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEE---eceee
Q psy12425        459 YRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR---VGNTR  535 (591)
Q Consensus       459 y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~---~~~~~  535 (591)
                      +++.|.+..|....    ...-.|.|| .+.+.. ..+++.|+|++|....+..+..|+|.|+..+ ..|..   .....
T Consensus       303 i~V~a~~~~~~~~~----~~~v~p~PP-~l~v~~-~~~~l~l~W~~P~~~~~~~~l~Yev~y~~~~-~~w~~~~~~~~~~  375 (419)
T 2gys_A          303 VSVQPRRAEKHIKS----SVNIQMAPP-SLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDT-ATWKDSKTETLQN  375 (419)
T ss_dssp             EEEEECCCCEEEEG----GGSBCCCCC-EEEEC----CCCEEEEEC--------CEEEEEEEECSS-SCSTTSCEEEEES
T ss_pred             EEEEEccCCccccc----eEEEEECCC-CeEEEE-eCCeEEEEECCCcccccccceEEEEEEEcCC-CCcceeecccccc
Confidence            55555443331100    001136666 355544 4789999999885322235789999998765 34531   11114


Q ss_pred             eeEEEEcCcccCceEEEEEEEEcCCc--CCCCCCCcce
Q psy12425        536 FTTMAITGLSPGHQYEFRVYAENVYG--RSDPSTTSDL  571 (591)
Q Consensus       536 ~~~~~i~~l~~~~~Y~~~v~A~n~~G--~~~~s~~~~~  571 (591)
                      .+.+.|.+|.|++.|.|+|+|.+..|  .|.+|+.+..
T Consensus       376 ~~~~~l~~L~p~t~Y~~qVRa~~~~g~~~G~wS~WS~~  413 (419)
T 2gys_A          376 AHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEA  413 (419)
T ss_dssp             CSEEECCCCCSSCCCEEEEEEEECCTTCCBCCCCCCCC
T ss_pred             ccEEEeccCCCCCeEEEEEEEEEcCCCCCCccCCCCCC
Confidence            57899999999999999999999874  4555555443

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.63  E-value=2.1e-14  Score=121.24  Aligned_cols=166  Identities=20%  Similarity=0.308  Sum_probs=125.7

Q ss_pred             cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCce-EEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCC
Q psy12425         96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW-ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP  174 (591)
Q Consensus        96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~  174 (591)
                      +.+......++.|+|.+|.   +..+..|.+.+...+...+ ...........+.+.+|.+++.|.|+|.|.|..|.+..
T Consensus        29 l~~~~~~~~sv~lsW~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~  105 (203)
T 2gee_A           29 LSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTP  105 (203)
T ss_dssp             EEEECCTTTCEEEEEECCS---SSSCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEESSSCBCCC
T ss_pred             cEEEecCCCEEEEEecCCC---CCCccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEEEEEEEeCCCcccc
Confidence            5666777899999999887   4478899999987765543 33333567789999999999999999999998877655


Q ss_pred             CCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCC-ccEEEEeeecCCceeeecC
Q psy12425        175 LEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSD-AWQRVNVAICAPSQINIPN  253 (591)
Q Consensus       175 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~  253 (591)
                      ...   ..   ...+| +|..+.+.....+++.|+|.+|.   +..+.+|.|.++..... .+.... .......+.|.+
T Consensus       106 ~~~---~t---~~~~p-~P~~l~~~~~~~~sv~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~  174 (203)
T 2gee_A          106 TTL---TQ---QTAVP-PPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELS-ISPSDNAVVLTN  174 (203)
T ss_dssp             EEE---EE---ECCCC-CCEEEEEEEEETTEEEEEEECCS---SCCCSEEEEEEEETTCGGGCEEEE-ECTTCCEEEECS
T ss_pred             Eee---ee---cCCCc-CCCceEEEEcCCCEEEEEEcCCC---CCCccEEEEEEEECCCCCccEEEE-cCCCcCEEEECC
Confidence            422   11   12233 66777778888999999999973   23788999999875443 344332 234668999999


Q ss_pred             cccCCcEEEEEEEEcCCCCCCC
Q psy12425        254 LIEGRQYEFRVYAQNEAGLSLP  275 (591)
Q Consensus       254 l~~~~~~~y~c~a~n~~g~~~~  275 (591)
                      |.++..|.|+++|.|..|.+.+
T Consensus       175 L~p~t~Y~~~V~A~~~~g~s~p  196 (203)
T 2gee_A          175 LLPGTEYVVSVSSVYEQHESTP  196 (203)
T ss_dssp             CCTTCEEEEEEEEEETTEECCC
T ss_pred             CCCCCEEEEEEEEecCCCcCCC
Confidence            9999999999999998887653

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.63  E-value=6.8e-15  Score=128.28  Aligned_cols=212  Identities=8%  Similarity=0.026  Sum_probs=108.8

Q ss_pred             EeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc--cEEEEe--eecCCceeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425        199 TQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA--WQRVNV--AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSL  274 (591)
Q Consensus       199 ~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~--~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~  274 (591)
                      ....|+.++|.|....  .. .  .|.+.  ..+...  +.....  .......|.|.+++..|.|.|+|.+.+..+...
T Consensus        17 ~V~~G~~VtL~C~~~~--~~-~--~~~W~--k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~   89 (257)
T 1b6u_A           17 LVKSEETVILQCWSDV--RF-Q--HFLLH--REGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQ   89 (257)
T ss_dssp             EEESSCCEEEEEEESS--CC-S--EEEEE--EESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTS
T ss_pred             EecCCCCEEEEEecCC--CC-c--EEEEE--ECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCcc
Confidence            4457889999999742  11 1  22221  112111  111100  011246799999999999999999987533211


Q ss_pred             CC--CCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEe-CCeEEEE
Q psy12425        275 PS--SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE-GDTYTLI  351 (591)
Q Consensus       275 ~s--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~  351 (591)
                      .+  +....+.+..  ...+|.+...+. ..+.+|+.++|.|.+.+.+ +.+.|+|++..+........... .....|.
T Consensus        90 ~s~~S~~~~L~V~~--~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~  165 (257)
T 1b6u_A           90 LSAPSDPLDIVITG--LYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFP  165 (257)
T ss_dssp             CCCCCCCEEEEEEC--SSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEE
T ss_pred             ccccCCCEEEeccc--CCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCceeEEEE
Confidence            12  2334444443  234677765544 4688999999999998764 68999999876643222111111 1245799


Q ss_pred             EcceecccceEEEEEEEeCCc-----ceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCC
Q psy12425        352 INSVYGVDADEYVCRAVNKGG-----VKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN  426 (591)
Q Consensus       352 i~~~~~~d~g~y~c~a~n~~g-----~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~  426 (591)
                      |.+++  |+|.|+|.|.+...     ..+....|.|..+|....++.  .......|..+.|.|.+ |.+.+.+.|...+
T Consensus       166 I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~--~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~  240 (257)
T 1b6u_A          166 LGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSP--TEPSSETGNPRHLHAAA-EQKLISEEDLNLD  240 (257)
T ss_dssp             EEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC----------------------------------------
T ss_pred             ecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCC--cccCccCCCeEEEEEEE-cchHHHHHHhhhh
Confidence            99998  99999999997643     224557788888776552221  12234568889999765 6677788887644

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.63  E-value=6.2e-15  Score=127.35  Aligned_cols=174  Identities=10%  Similarity=0.191  Sum_probs=113.4

Q ss_pred             CCeEE-eeccccceeccccEEEEEEEcCC-CC-C-eeEEecCCccC-CCCCceEEEEeCC----eEEEEEcceecccceE
Q psy12425        292 APEII-VPLRNANAIQNHNAQFQCTITGC-PK-P-TISWLKGSREI-TPSARHHIFAEGD----TYTLIINSVYGVDADE  362 (591)
Q Consensus       292 ~p~~~-~~~~~~~~~~g~~~~l~c~~~~~-p~-~-~v~W~~~~~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~  362 (591)
                      +|.+. ..+....+..|+.+.|.|.+.+. |. + .+.|+++|..+ ...........++    ...|.|.++..+|.|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~   91 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER   91 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence            45443 45556667899999999999884 63 4 99999998877 3222211111112    2369999999999999


Q ss_pred             EEEEEEeCCcceeeeeEEEEe------cCCcccCCCCcccceeecCCCeEEEEEeeecc-C-CCeEEEeeCCeEeeeccc
Q psy12425        363 YVCRAVNKGGVKSTKAELIIM------TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-P-KPKITWYRDNEVIESGGH  434 (591)
Q Consensus       363 y~c~a~n~~g~~~~~~~l~v~------~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p-~~~v~W~~~~~~~~~~~~  434 (591)
                      |+|.|.|..+..  ...+.|.      .+|.+...+....  .+ .+..+.|.|.+.|. | .+.|.|+++|..+.....
T Consensus        92 Y~C~~~~~~~~~--~~~~~v~~~~~~~~~P~v~v~~~~~~--~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~  166 (231)
T 2w59_A           92 FTCTVQHEELPL--PLSKSVYRNTGPTTPPLIYPFAPHPE--EL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEF  166 (231)
T ss_dssp             EEEEEECTTCSS--CEEEEECCCCSCCBCCEEEEECCCGG--GG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGC
T ss_pred             EEEEEEcCCCCC--ceEEEEecCCCCCcCCEEEEeCCCHH--Hh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCccc
Confidence            999999987653  2333343      2343322111111  11 24579999999985 4 379999999998865431


Q ss_pred             eE---EEe--------cC-C----eeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        435 FH---VET--------SE-R----HAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       435 ~~---~~~--------~~-~----~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      ..   ...        .+ .    .+.|.|.....+|.|.|+|.|.|.....
T Consensus       167 ~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          167 VTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             EECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             ccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence            11   111        11 1    2567788777788999999999986543

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.62  E-value=1.4e-14  Score=122.15  Aligned_cols=161  Identities=9%  Similarity=-0.021  Sum_probs=105.7

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECC-EEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNG-RVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      .+.+.+|+++.|.|.+.|.|.+.+.|+++. ..+  .  ......+....|.|.+++.+|+|.|.|.|.|..|..+..+.
T Consensus        10 ~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~   85 (202)
T 1vca_A           10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--N--GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (202)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--S--SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             cEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--c--ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEE
Confidence            345569999999999999999999999842 211  1  12233445568999999999999999999999998888899


Q ss_pred             EEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe---------ecCcceEEEcCC
Q psy12425         83 INITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST---------TCHDTTFIVQGL  153 (591)
Q Consensus        83 l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~l  153 (591)
                      |.|...|..+..........+..++|.|....   +.+.....+.|...+. .......         ......+.+...
T Consensus        86 l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~---~~p~~~~~i~W~k~~~-~l~~~~~~~~~~~~~~~~~~~~l~i~~~  161 (202)
T 1vca_A           86 VEIYSFPKDPEIHLSGPLEAGKPITVKCSVAD---VYPFDRLEIDLLKGDH-LMKSQEFLEDADRKSLETKSLEVTFTPV  161 (202)
T ss_dssp             EEEEBCCSCCEEEESSCEETTSCEEEEEEEEE---EBSGGGEEEEEEETTE-EEEEEECCSCCSSCCCEEEEEEEEECCC
T ss_pred             EEEEeCCCCCEeCCceEEcCCCCEEEEEEECC---cCCCCCeEEEEEeCCe-ECcccccccccCcCcceEEEEEEEEEee
Confidence            99998876554322234556778888887432   1111011122211111 0000000         011234567777


Q ss_pred             cCCcEEEEEEEEEccCCCC
Q psy12425        154 TEGQEYLFHVMAVNENGMG  172 (591)
Q Consensus       154 ~~~~~y~~~~~a~n~~g~~  172 (591)
                      ..++...|+|.|.|..|..
T Consensus       162 ~~d~~g~ytC~A~n~~~~~  180 (202)
T 1vca_A          162 IEDIGKVLVCRAKLHIDEM  180 (202)
T ss_dssp             GGGTTCEEEEEEEECSCCC
T ss_pred             eccCCCeEEEEEEccccCC
Confidence            7788889999999987754

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.62  E-value=1.7e-15  Score=134.77  Aligned_cols=178  Identities=13%  Similarity=0.201  Sum_probs=116.1

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecC--CccC------------CC----CCceEEEE-eCCeEEEEEc
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREI------------TP----SARHHIFA-EGDTYTLIIN  353 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~------------~~----~~~~~~~~-~~~~~~l~i~  353 (591)
                      +.+...+..+.+.+|+.+.|.|.+. .+.+.+.|++.  +...            ..    ..++.+.. .+...+|.|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            3444445567789999999999987 57789999982  2211            00    14555543 2336789999


Q ss_pred             ceecccceEEEEEEEeC--CcceeeeeEEEEecCCcccCCCCc----ccceeecCCCeEEEEEeeeccCCC--eEEEeeC
Q psy12425        354 SVYGVDADEYVCRAVNK--GGVKSTKAELIIMTAPKFNVPPRF----RDTAYFDKGENVVVKIPFTGYPKP--KITWYRD  425 (591)
Q Consensus       354 ~~~~~d~g~y~c~a~n~--~g~~~~~~~l~v~~~p~~~~~~~~----~~~~~~~~g~~~~l~c~~~~~p~~--~v~W~~~  425 (591)
                      +++.+|+|.|+|.+.|.  .+.......+.|...+....+|..    .....+..|+.+.|.|.+.+.+++  .+.|+++
T Consensus       106 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~  185 (268)
T 3pl6_D          106 RTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  185 (268)
T ss_dssp             SCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEES
T ss_pred             CCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEEC
Confidence            99999999999999984  333344556777652211111111    011234458999999999986654  8999999


Q ss_pred             CeEeeeccceEEE--------ecC---CeeEEEEeccCCCc-ceeEEEEEEcCCCccc
Q psy12425        426 NEVIESGGHFHVE--------TSE---RHAILTIRDASNVD-TAPYRVVAENDLGMDS  471 (591)
Q Consensus       426 ~~~~~~~~~~~~~--------~~~---~~~~l~i~~~~~~~-~g~y~c~a~n~~g~~~  471 (591)
                      |..+.........        .++   -...|.|.....+| .|.|+|.|.|......
T Consensus       186 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~  243 (268)
T 3pl6_D          186 GKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  243 (268)
T ss_dssp             SSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             CEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCC
Confidence            9888543221100        011   12456777777776 9999999999866543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.62  E-value=4.9e-14  Score=117.45  Aligned_cols=164  Identities=12%  Similarity=0.172  Sum_probs=113.8

Q ss_pred             EEeecCCeEEEEEecCCCCCCc-ceEEEEEEeeecCCCccEEEEe--eecCCceeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425        198 VTQVGGDFVNLSWDKPLDDGGS-RIQGYWIDKHEVGSDAWQRVNV--AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSL  274 (591)
Q Consensus       198 ~~~~~~~~v~l~w~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~  274 (591)
                      .....|..++|.|.....+... .+.+|.     .+    ..+..  .......|.|.  +..|.|.|+|.|.|..    
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k-----~~----~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~~----   72 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLK-----GG----VVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPEP----   72 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEES-----SS----EEEECTTCCCSEEEEEEC--GGGCCEEEEEEEESTT----
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEe-----CC----EEeecccccCCcEEEEEe--chhhCeEEEEEEECCc----
Confidence            3446688899999864322211 222221     11    01110  01112355555  6889999999999821    


Q ss_pred             CCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCC-CCeeEEec---CCc-cCCC--CCceEEEEeCCe
Q psy12425        275 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP-KPTISWLK---GSR-EITP--SARHHIFAEGDT  347 (591)
Q Consensus       275 ~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~---~~~-~~~~--~~~~~~~~~~~~  347 (591)
                        .....+.+.     .+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++   ++. .+..  ..++.+..++..
T Consensus        73 --~~~~~l~V~-----~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (184)
T 3b5h_A           73 --MGTANIQLH-----GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGR  145 (184)
T ss_dssp             --SCEEEEEEC-----CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTE
T ss_pred             --CcEEEEEEe-----cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCe
Confidence              134455554     467776666667788999999999999999 79999999   444 3332  256777777778


Q ss_pred             EEEEEccee-cccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        348 YTLIINSVY-GVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       348 ~~l~i~~~~-~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      ..|.|.++. ..|.|.|+|.|.|..|.....+.|.|.
T Consensus       146 ~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          146 SELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             EEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            899999999 999999999999999998888887775

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.62  E-value=6.8e-15  Score=109.65  Aligned_cols=84  Identities=15%  Similarity=0.129  Sum_probs=73.1

Q ss_pred             cCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeC-------CeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          9 EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLD-------DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      .+..+.|.|.+.|.|.|.|+|+|||+.|..+.+..+....       ...+|.|.+++..|+|.|+|.|.|..|....++
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            4678999999999999999999999999888776544322       246899999999999999999999999999999


Q ss_pred             EEEEecCCCCC
Q psy12425         82 TINITGLPGPP   92 (591)
Q Consensus        82 ~l~v~~~p~~p   92 (591)
                      .|.|...|...
T Consensus        94 ~l~v~~~P~~~  104 (126)
T 1he7_A           94 MAAFMDNPFEF  104 (126)
T ss_dssp             EECCCSCTTSC
T ss_pred             EEEEEcCCCCC
Confidence            99999888653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.62  E-value=3.2e-15  Score=108.14  Aligned_cols=83  Identities=14%  Similarity=0.310  Sum_probs=72.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECC--EEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--RVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |..+.+.+|+.+.|.|.+.|.|.|.+.|+|++  ..+...  ..+........|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus         9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   86 (93)
T 1wit_A            9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE--LLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEA   86 (93)
T ss_dssp             CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT--SEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc--EEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEE
Confidence            56788999999999999999999999999999  877554  34445566689999999999999999999999999888


Q ss_pred             EEEEEEe
Q psy12425         80 TFTINIT   86 (591)
Q Consensus        80 ~~~l~v~   86 (591)
                      .+.|.|.
T Consensus        87 ~~~l~V~   93 (93)
T 1wit_A           87 IFEVIVQ   93 (93)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            8888773

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.62  E-value=2.2e-15  Score=132.98  Aligned_cols=126  Identities=15%  Similarity=0.206  Sum_probs=86.2

Q ss_pred             CCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcC-CCC-C
Q psy12425        245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITG-CPK-P  322 (591)
Q Consensus       245 ~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~p~-~  322 (591)
                      ....|.|.+++..|.|.|+|.|.|..+....  ....+.+..  ...+|.+...........|+.+.|.|.+.| .|. +
T Consensus       111 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~--~~~~l~V~~--~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~  186 (254)
T 2c1o_A          111 TDFTLKISRVEAEDLGIYYCVQGSHFPPTFG--AGTKLELKR--ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDI  186 (254)
T ss_dssp             TEEEEEESSCCGGGCSEEEEEECSSSSCEEB--CCEEEEECC--CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCC
T ss_pred             CEEEEEECcCCcccCEEEEEEEEcCcceEec--CCEEEEECC--CCCCCeeEeecCChhhccCCcEEEEEEEecccCCCc
Confidence            3458999999999999999999987542211  122344432  124677766544444456889999999988 444 4


Q ss_pred             eeEEecCCccCCCCC--ceEEEEeCC-----eEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        323 TISWLKGSREITPSA--RHHIFAEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       323 ~v~W~~~~~~~~~~~--~~~~~~~~~-----~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      .+.|++++..+....  ......++.     ...|.|.++..+|+|.|+|.|.|.....
T Consensus       187 ~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          187 NVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             EEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             EEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            699999998776541  111111111     3479999999999999999999976543

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.62  E-value=1.9e-14  Score=123.01  Aligned_cols=169  Identities=15%  Similarity=0.211  Sum_probs=109.2

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCC--ccC----------------CCCCceEEEEe--CCeEEEEEcceec
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGS--REI----------------TPSARHHIFAE--GDTYTLIINSVYG  357 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~--~~~----------------~~~~~~~~~~~--~~~~~l~i~~~~~  357 (591)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|+++.  ...                ....++.+..+  +...+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (215)
T ss_dssp             CCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCG
T ss_pred             CCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCc
Confidence            456688999999999998864  5789998853  211                01235555543  3457999999999


Q ss_pred             ccceEEEEEEEeCCcc---eeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEeeCCeE
Q psy12425        358 VDADEYVCRAVNKGGV---KSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWYRDNEV  428 (591)
Q Consensus       358 ~d~g~y~c~a~n~~g~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~~~~  428 (591)
                      +|+|.|.|.+.|..+.   ......|.|..    +|.+...+.   ...+..|+.+.|.|.+.+. |.| .+.|++++..
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  164 (215)
T 1c5d_H           88 EDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAP---GCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALS  164 (215)
T ss_dssp             GGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECC---CSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTC
T ss_pred             ccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccC---ChhhccCCcEEEEEEEeeeEcCCcEEEEccCCcc
Confidence            9999999999987532   22346777763    233321111   1124679999999999987 877 9999999865


Q ss_pred             eeeccceEEEecCCeeEE--EEeccCCCcceeEEEEEEcCCCccceE
Q psy12425        429 IESGGHFHVETSERHAIL--TIRDASNVDTAPYRVVAENDLGMDSAI  473 (591)
Q Consensus       429 ~~~~~~~~~~~~~~~~~l--~i~~~~~~~~g~y~c~a~n~~g~~~~~  473 (591)
                      +.......... +....+  .|.....++ |.|+|.|.|..|.....
T Consensus       165 ~~~~~~~~~~~-~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~  209 (215)
T 1c5d_H          165 SDVHTFPAVLQ-SGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVD  209 (215)
T ss_dssp             CSCCBCCCEEE-TTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred             CceEecCcccC-CCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEE
Confidence            43111111111 111111  233333356 99999999998875443

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.62  E-value=4.1e-15  Score=111.14  Aligned_cols=101  Identities=24%  Similarity=0.345  Sum_probs=83.6

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-CceEEeceeeeeEEEEcCcccCceEEEEEEEEc
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-SSWIRVGNTRFTTMAITGLSPGHQYEFRVYAEN  558 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n  558 (591)
                      .+|.+|..+.+..++.+++.|+|.+|..+++..+.+|.|+++.... ..|..........+++.+|.+++.|.|+|+|.|
T Consensus         6 ~~P~~P~~p~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n   85 (109)
T 1x5x_A            6 SGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYN   85 (109)
T ss_dssp             CCCCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEEC
T ss_pred             CCCcCCCCCEEEEccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeEeCCccEEEECCCCCCCEEEEEEEEEe
Confidence            5688888889999999999999999887777789999999987664 366665555578999999999999999999999


Q ss_pred             CCcCCCCCCCcceEEeccccccC
Q psy12425        559 VYGRSDPSTTSDLITTYGELLSG  581 (591)
Q Consensus       559 ~~G~~~~s~~~~~~~t~~~~p~~  581 (591)
                      ..|.|.+|..+.+ +|.+.+|..
T Consensus        86 ~~G~s~~S~~~~~-~T~~~~P~~  107 (109)
T 1x5x_A           86 SEGKSNPSEVVEF-TTCPDSGPS  107 (109)
T ss_dssp             SSCEEEECCCEEE-ECCCCCCCC
T ss_pred             CCCCcCCccCEEe-EeCCCCCCC
Confidence            9999999987654 555545543

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.61  E-value=3.6e-15  Score=125.61  Aligned_cols=159  Identities=13%  Similarity=0.102  Sum_probs=106.9

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCee--eEEEEEE
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGS--VSGTFTI   83 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~--~~~~~~l   83 (591)
                      .|.+|++++|.|.+.+ +.+.+.|+|+|..+....+ ..........|.|.+++.+|+|.|+|.|.|..|.  .+..+.|
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l   92 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLEL   92 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEE-CCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEE
T ss_pred             cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccc-ccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEE
Confidence            7899999999999987 7789999999987654211 1111235578999999999999999999999883  3556888


Q ss_pred             EEecCCCCCCCC--cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCC--c-eEEEEeecCcceEEEcCCcCCcE
Q psy12425         84 NITGLPGPPIGP--LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP--H-WICISTTCHDTTFIVQGLTEGQE  158 (591)
Q Consensus        84 ~v~~~p~~p~~~--~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~--~-~~~~~~~~~~~~~~i~~l~~~~~  158 (591)
                      .|...+.+|...  .......+..++|.|....     ....|.+.+......  . ............+.|.++...+.
T Consensus        93 ~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~-----~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  167 (196)
T 3p2t_A           93 VMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRS-----PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHG  167 (196)
T ss_dssp             EEECSSCCCEEEEESCSEECTTCCEEEEEEEEE-----EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGC
T ss_pred             EecCCCCCCEEEeCCcceecCCCeEEEEEecCC-----CCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCC
Confidence            887654444311  0113346788999997432     112333332211110  0 11111223456799999999999


Q ss_pred             EEEEEEEEccCCC
Q psy12425        159 YLFHVMAVNENGM  171 (591)
Q Consensus       159 y~~~~~a~n~~g~  171 (591)
                      +.|+|.|.|..+.
T Consensus       168 G~Y~C~a~n~~~~  180 (196)
T 3p2t_A          168 GTYRCFSSHGFSH  180 (196)
T ss_dssp             EEEEEEEECGGGT
T ss_pred             CeEEEEEEcCCCC
Confidence            9999999998763

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.61  E-value=5.9e-15  Score=128.94  Aligned_cols=166  Identities=14%  Similarity=0.204  Sum_probs=98.8

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecCCc--cCC-----------------CCCceEEEEe--CCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKGSR--EIT-----------------PSARHHIFAE--GDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~~--~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~  356 (591)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++...  ...                 ...++.+..+  ....+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (257)
T 3bn9_D            8 GGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR   87 (257)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence            345688999999999998876  67899988531  110                 1235555544  356799999999


Q ss_pred             cccceEEEEEEEeCCcc-------------eeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeecc-CCC
Q psy12425        357 GVDADEYVCRAVNKGGV-------------KSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP  418 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~-------------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~  418 (591)
                      .+|+|.|.|.+.+..|.             ......|.|..    +|.+.....   ...+..|+.+.|.|.+.+. |.+
T Consensus        88 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p---~~~~~~g~~v~L~C~~~g~~P~p  164 (257)
T 3bn9_D           88 AEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEP  164 (257)
T ss_dssp             GGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC--------------CCCEEEEEBSSC
T ss_pred             hhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecC---cccccCCCcEEEEEEEeeEECCC
Confidence            99999999999997651             12335777764    233332111   1124578999999999986 777


Q ss_pred             -eEEEeeCCeEeeeccceEEEecCC----eeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        419 -KITWYRDNEVIESGGHFHVETSER----HAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       419 -~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                       .|.|++++..+.......+...+.    ...|.|.....++ |.|+|.|.|....
T Consensus       165 i~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~  219 (257)
T 3bn9_D          165 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  219 (257)
T ss_dssp             CEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred             cEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence             999999987642111101111111    3457777777777 9999999997544

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.61  E-value=6.1e-15  Score=108.33  Aligned_cols=86  Identities=23%  Similarity=0.270  Sum_probs=74.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCc-eeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDR-FKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|++..+....+ +.+...+...+|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~   91 (99)
T 1u2h_A           12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCE   91 (99)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEE
Confidence            5678999999999999999999999999999999876643 344445556789999999999999999999999999888


Q ss_pred             EEEEEec
Q psy12425         81 FTINITG   87 (591)
Q Consensus        81 ~~l~v~~   87 (591)
                      +.|.|..
T Consensus        92 ~~l~V~~   98 (99)
T 1u2h_A           92 ARLEVRG   98 (99)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            8888864

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.61  E-value=1.4e-14  Score=109.42  Aligned_cols=101  Identities=18%  Similarity=0.235  Sum_probs=90.6

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+.......+|.|.++...|+|.|+|.|.|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence            57888888888889999999999999999999999999999998888888877666789999999999999999999999


Q ss_pred             CcceeeeeEEEEecCCcccCC
Q psy12425        371 GGVKSTKAELIIMTAPKFNVP  391 (591)
Q Consensus       371 ~g~~~~~~~l~v~~~p~~~~~  391 (591)
                      .|.....+.|.|...|..+..
T Consensus        86 ~g~~~~~~~l~V~~~p~~P~~  106 (114)
T 2cqv_A           86 LGSRQAQVNLTVVDKPDPPAG  106 (114)
T ss_dssp             SCEEECCEEEEEECSCSCCCC
T ss_pred             CCcEEEEEEEEEECCCCCCCC
Confidence            999989999999987765543

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.61  E-value=4.1e-15  Score=113.41  Aligned_cols=97  Identities=29%  Similarity=0.465  Sum_probs=82.9

Q ss_pred             cCCCCCCCCCeee-eecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-CceEEeceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        479 SDRPDPPQFPTVE-DIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-SSWIRVGNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       479 ~~~p~~p~~~~~~-~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      .+.|.+|..+.+. ..+.+++.|+|++|..+++..+.+|.|+++.... ..|..+.....+.+++.+|.+++.|.|+|+|
T Consensus        15 ~~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   94 (120)
T 2crm_A           15 PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYC   94 (120)
T ss_dssp             CCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEEE
T ss_pred             CCCCCCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCEEEEeccccEEEECCCCCCCEEEEEEEE
Confidence            4678888888887 7889999999999887777889999999988765 5888876666789999999999999999999


Q ss_pred             EcCCcCCCCCCCcceEEecc
Q psy12425        557 ENVYGRSDPSTTSDLITTYG  576 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~~~t~~  576 (591)
                      .|.+|.|++|..+.+ +|.+
T Consensus        95 ~n~~G~s~~S~~~~~-~T~~  113 (120)
T 2crm_A           95 ISDGGQSAVSESLLV-QTPA  113 (120)
T ss_dssp             EETTEECCCCCCCCC-CCCC
T ss_pred             EcCCccCCCcccEEE-EcCC
Confidence            999999999987654 4443

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.61  E-value=9e-15  Score=108.03  Aligned_cols=86  Identities=19%  Similarity=0.266  Sum_probs=75.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCC--ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |.++.+.+|+++.|.|.+.+ |.+.+.|+|+|..+....  ++++...+....|.|.+++.+|+|.|+|.|.|    ...
T Consensus        14 ~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~   88 (103)
T 1x44_A           14 LEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQS   88 (103)
T ss_dssp             CCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEE
T ss_pred             CCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----CcE
Confidence            56789999999999999987 779999999999998887  66888777778999999999999999999987    466


Q ss_pred             EEEEEEecCCCCC
Q psy12425         80 TFTINITGLPGPP   92 (591)
Q Consensus        80 ~~~l~v~~~p~~p   92 (591)
                      .+.|.|...|.++
T Consensus        89 ~~~l~V~~~p~p~  101 (103)
T 1x44_A           89 SAKLSVDLKSGPS  101 (103)
T ss_dssp             EEEEEEECCCSCC
T ss_pred             EEEEEEeCCCCCC
Confidence            7888888877654

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.61  E-value=2.1e-14  Score=128.29  Aligned_cols=180  Identities=13%  Similarity=0.190  Sum_probs=118.2

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCc--cC--------------C---CCCceEEEEe-CCeEEEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--EI--------------T---PSARHHIFAE-GDTYTLI  351 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~--------------~---~~~~~~~~~~-~~~~~l~  351 (591)
                      .+.+...+..+.+.+|+.+.|.|.+.+.+.+.+.|+++..  ..              .   ...++.+..+ +...+|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            3445555667789999999999999888889999998531  10              0   1235555542 4567899


Q ss_pred             EcceecccceEEEEEEEeCCc------ceeeeeEEEEecCCcccCCCCcc----cceeecCCCeEEEEEeeecc-CC-Ce
Q psy12425        352 INSVYGVDADEYVCRAVNKGG------VKSTKAELIIMTAPKFNVPPRFR----DTAYFDKGENVVVKIPFTGY-PK-PK  419 (591)
Q Consensus       352 i~~~~~~d~g~y~c~a~n~~g------~~~~~~~l~v~~~p~~~~~~~~~----~~~~~~~g~~~~l~c~~~~~-p~-~~  419 (591)
                      |.+++.+|+|.|+|.+.|..+      .......|.|........+|...    ....+..|+.+.|.|.+.+. |. +.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            999999999999999999432      11233567776532211122111    11123468999999999987 43 69


Q ss_pred             EEEeeCCeEeeeccceE---EE----ecCC----eeEEEEeccCCC-cceeEEEEEEcCCCccc
Q psy12425        420 ITWYRDNEVIESGGHFH---VE----TSER----HAILTIRDASNV-DTAPYRVVAENDLGMDS  471 (591)
Q Consensus       420 v~W~~~~~~~~~~~~~~---~~----~~~~----~~~l~i~~~~~~-~~g~y~c~a~n~~g~~~  471 (591)
                      |.|+++|..+..+....   ..    ..+.    ...|.|...... +.+.|+|.|.|......
T Consensus       184 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~  247 (279)
T 2wbj_D          184 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  247 (279)
T ss_dssp             EEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence            99999998876432211   00    0111    234777776665 46789999999876554

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.61  E-value=6.8e-15  Score=111.85  Aligned_cols=101  Identities=32%  Similarity=0.405  Sum_probs=85.6

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-CceEEeceeeeeEEEEcCcccCceEEEEEEEEc
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-SSWIRVGNTRFTTMAITGLSPGHQYEFRVYAEN  558 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n  558 (591)
                      .+|.+|.++.+...+.+++.|+|.+|. +++..+.+|.|+++.... ..|..........+++.+|.+++.|.|+|+|.|
T Consensus        16 ~~P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n   94 (118)
T 1x3d_A           16 CEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARN   94 (118)
T ss_dssp             SCCCCCCCCEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEECCEEE
T ss_pred             CCCcCCCCcEEeccCCCEEEEEECCCC-CCCCcceEEEEEEecCCCCCCeEEeeccCCcEEEeCCCCCCCEEEEEEEEEE
Confidence            578899999999999999999999886 566789999999987665 678777666668999999999999999999999


Q ss_pred             CCcCCCCCCCcceEEeccccccCC
Q psy12425        559 VYGRSDPSTTSDLITTYGELLSGM  582 (591)
Q Consensus       559 ~~G~~~~s~~~~~~~t~~~~p~~~  582 (591)
                      ..|.|.+|..+.+ +|.+.+|..|
T Consensus        95 ~~G~s~~S~~~~~-~T~~~~P~~P  117 (118)
T 1x3d_A           95 DYGTSGFSEEVLY-YTSGCSGPSS  117 (118)
T ss_dssp             SSCBCCCCCCEEE-ECSCCCCCCC
T ss_pred             CCCCCCCccCEEE-EcCCCCCccC
Confidence            9999999998764 5665555543

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.60  E-value=2.1e-15  Score=114.66  Aligned_cols=106  Identities=34%  Similarity=0.523  Sum_probs=89.1

Q ss_pred             EEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCC-CCceEEe-ceeeeeEEEEcCcccCceEEE
Q psy12425        475 KIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP-MSSWIRV-GNTRFTTMAITGLSPGHQYEF  552 (591)
Q Consensus       475 ~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~-~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~  552 (591)
                      ......+|.+|.++.+...+.+++.|+|.+|. +++..+.+|.|+++... ...|..+ .......+++.+|.+++.|.|
T Consensus         9 ~~~~~~~P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~f   87 (117)
T 1uem_A            9 NYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLF   87 (117)
T ss_dssp             CCCSCCSCBCCCCCEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEE
T ss_pred             cCCCCCCccCCCCCEEEEecCCEEEEEEeCCC-CCCcCceEEEEEEEECCCCCceeEcccccCcCEEEECCCCCCCEEEE
Confidence            34456789999999999999999999999887 66778999999998764 5677765 344667999999999999999


Q ss_pred             EEEEEcCCcCCCCCCCcceEEeccccccC
Q psy12425        553 RVYAENVYGRSDPSTTSDLITTYGELLSG  581 (591)
Q Consensus       553 ~v~A~n~~G~~~~s~~~~~~~t~~~~p~~  581 (591)
                      +|+|.|..|.|.+|..+..++|.+++|..
T Consensus        88 rV~A~n~~G~s~~S~~~~~v~t~~~~P~~  116 (117)
T 1uem_A           88 MVRAINPQGLSDPSPMSDPVRTQDSGPSS  116 (117)
T ss_dssp             EEEEEETTEEEEECCCCCCEECCCSSCCC
T ss_pred             EEEEECCCccCCCcCCCccEEccCCCCCC
Confidence            99999999999999988767887766653

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.60  E-value=7.1e-16  Score=112.33  Aligned_cols=97  Identities=24%  Similarity=0.269  Sum_probs=79.7

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec---eeeeeEEEEcCcccCceEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG---NTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      .+|++|.++.+.. ..+++.|+|++|. +++++|++|.|+|+. ....|....   ....+.+.+.+|.+++.|.|||.|
T Consensus         6 ep~~pP~~l~v~~-~~~sv~L~W~pP~-~~~~~I~gY~vey~~-~~~~W~~~~~~~~~~~t~~~v~~L~pg~~Y~FRV~A   82 (108)
T 1v5j_A            6 SGLSPPRGLVAVR-TPRGVLLHWDPPE-LVPKRLDGYVLEGRQ-GSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVA   82 (108)
T ss_dssp             CCCCCCEEEEEEE-CSSSEEEEEECCS-CCSSCCCBEEEEEEE-TTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEE
T ss_pred             CCCCCCcceEEEE-eCCEEEEEECCCC-CCCCCCcEEEEEEEe-CCCCcEEeeeecCCCcCEEEeCCCCCCCEEEEEEEE
Confidence            5678888888876 5678999999987 477799999999998 556787653   346689999999999999999999


Q ss_pred             EcCCcCCCCCCCcceEEeccccc
Q psy12425        557 ENVYGRSDPSTTSDLITTYGELL  579 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~~~t~~~~p  579 (591)
                      .|.+|.|++|....+.|.....|
T Consensus        83 ~n~~G~s~pS~~~~v~T~~~~~~  105 (108)
T 1v5j_A           83 FAGSFVSDPSNTANVSTSGLSGP  105 (108)
T ss_dssp             EETTEEEEECSCCCCCCSSCSSC
T ss_pred             EcCCCCcCCCCCEEEEeCCcccC
Confidence            99999999999877655544444

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.60  E-value=8.6e-16  Score=113.82  Aligned_cols=85  Identities=24%  Similarity=0.421  Sum_probs=78.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|+|..+....++.+...+...+|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus        21 p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  100 (106)
T 1nct_A           21 PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEF  100 (106)
T ss_dssp             CCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEE
T ss_pred             CCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEE
Confidence            67899999999999999999999999999999999888888887777778999999999999999999999999988888


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .|.|.
T Consensus       101 ~l~V~  105 (106)
T 1nct_A          101 TLTIQ  105 (106)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            88875

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.60  E-value=8.3e-15  Score=109.37  Aligned_cols=92  Identities=11%  Similarity=0.143  Sum_probs=73.4

Q ss_pred             CceeeeecCCeEEEEEEeccC---CCceEEEEECCEE-ee--cCCceeEEEeC------CeEEEEEcccCCCCceEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD---QPMEVSLTKNGRV-VQ--SDDRFKFTVLD------DYIIIFIKEIRKEDAGDYTVN   69 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~---p~~~v~W~~~~~~-~~--~~~~~~~~~~~------~~~~l~i~~~~~~d~g~Y~c~   69 (591)
                      |+++.|.+|++++|.|.+.|.   |.|.|.|||+... +.  ...++.+....      ...+|.|.+++++|+|.|+|.
T Consensus        14 P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Ce   93 (126)
T 2dav_A           14 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCE   93 (126)
T ss_dssp             CCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEE
T ss_pred             CCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEE
Confidence            788999999999999999875   8999999997521 11  12444443211      147899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEec-CCCCCC
Q psy12425         70 LSNSSGSVSGTFTINITG-LPGPPI   93 (591)
Q Consensus        70 ~~n~~g~~~~~~~l~v~~-~p~~p~   93 (591)
                      |.|..|..+..+.|.|.. ++..|.
T Consensus        94 vsn~~g~~~~~~~L~V~~~~~~~p~  118 (126)
T 2dav_A           94 VTYKDKFDSCSFDLEVHESTGTTPN  118 (126)
T ss_dssp             EECSSCEEEECCEEEEECCCCSCCC
T ss_pred             EEeCCCcEEEEEEEEEEecCCCCCe
Confidence            999999999999999999 555554

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.4e-15  Score=114.33  Aligned_cols=92  Identities=23%  Similarity=0.334  Sum_probs=81.0

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEe-CCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL-DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|++..+....+..+... +...+|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   95 (110)
T 2dm3_A           16 PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFS   95 (110)
T ss_dssp             CCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEEC
T ss_pred             CCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEE
Confidence            6788999999999999999999999999999998877765554443 335799999999999999999999999999999


Q ss_pred             EEEEEecCCCCCC
Q psy12425         81 FTINITGLPGPPI   93 (591)
Q Consensus        81 ~~l~v~~~p~~p~   93 (591)
                      +.|.|...|.+|.
T Consensus        96 ~~l~V~~~p~~P~  108 (110)
T 2dm3_A           96 LELVVAAKESGPS  108 (110)
T ss_dssp             CEEEEECCCCSSS
T ss_pred             EEEEEeCCCCCCC
Confidence            9999999888775

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.60  E-value=1.5e-15  Score=129.78  Aligned_cols=164  Identities=20%  Similarity=0.241  Sum_probs=116.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEe----------ec--CCceeEEEeCCeEEEEEcccCCCCceEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV----------QS--DDRFKFTVLDDYIIIFIKEIRKEDAGDYTVN   69 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~----------~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~   69 (591)
                      |..+.+.+|+++.|.|.+.+.|.+.+.|+|++..+          ..  ..++.+  .+  ..|.|.+++.+|+|.|+|.
T Consensus        11 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~--~~L~i~~~~~~d~G~Y~C~   86 (209)
T 1nbq_A           11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF--LP--TGITFKSVTREDTGTYTCM   86 (209)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE--ET--TEEECSCCCTTSCSEEEEE
T ss_pred             CCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEe--ec--cEEEEeeCCHHHCcEEEEE
Confidence            56788999999999999999999999999987652          11  223332  22  5899999999999999999


Q ss_pred             EEcCCe--eeEEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCce---------EE
Q psy12425         70 LSNSSG--SVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW---------IC  138 (591)
Q Consensus        70 ~~n~~g--~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~---------~~  138 (591)
                      +.|..|  ..+..+.|.|...|..+..+.......+..+.|.|....   +.+...+.+.+....-...         ..
T Consensus        87 ~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~---~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  163 (209)
T 1nbq_A           87 VSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQD---GSPPSEYTWFKDGIVMPTNPKSTRAFSNSS  163 (209)
T ss_dssp             EEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCS---CBSCCEEEEEETTCCCCSCSSSSSSCTTCC
T ss_pred             EecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCC---CCCCceeEEEECCeeCCCccccceeeeccc
Confidence            999865  345678889988888777655555667889999998522   2232233333221100000         00


Q ss_pred             EEeecCcceEEEcCCcCCcEEEEEEEEEccCCCC
Q psy12425        139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMG  172 (591)
Q Consensus       139 ~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~  172 (591)
                      .........+.|.++...+.+.|+|.|.|..|..
T Consensus       164 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          164 YVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             CCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             eEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence            0001245689999999999999999999998875

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.60  E-value=5.2e-15  Score=125.67  Aligned_cols=163  Identities=12%  Similarity=0.173  Sum_probs=97.4

Q ss_pred             eccccEEEEEEEcCCC----CCeeEEecCCccCCCCCc-eEEEEeCCeE----EEEEcceecccceEEEEEEEeCCccee
Q psy12425        305 IQNHNAQFQCTITGCP----KPTISWLKGSREITPSAR-HHIFAEGDTY----TLIINSVYGVDADEYVCRAVNKGGVKS  375 (591)
Q Consensus       305 ~~g~~~~l~c~~~~~p----~~~v~W~~~~~~~~~~~~-~~~~~~~~~~----~l~i~~~~~~d~g~y~c~a~n~~g~~~  375 (591)
                      ..|+.+.|.|.+.|.+    .+.|.|++++..+..... ......++.+    .|.|......|+|.|+|.|.|..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            6899999999998865    359999999876654321 1111122221    122333333449999999999877643


Q ss_pred             eeeEE----EEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCCeEeeeccceEEEec-CC----ee
Q psy12425        376 TKAEL----IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDNEVIESGGHFHVETS-ER----HA  444 (591)
Q Consensus       376 ~~~~l----~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~-~~----~~  444 (591)
                      ....+    .+..+|.+...+..  ... ..+..+.|.|.+.|. |. +.|.|+++|..+........... +.    ..
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~--~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s  172 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPS--RDE-LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYS  172 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCC--GGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEE
T ss_pred             eEEEeccCCCCCcCCEEEEECCC--hHH-hcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEE
Confidence            33233    22334444322211  111 245669999999985 54 49999999988753222111111 11    12


Q ss_pred             EEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        445 ILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       445 ~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      .|.|......|.|.|+|.|.|.....
T Consensus       173 ~l~i~~~~~~~~g~YtC~a~n~~l~~  198 (207)
T 1l6x_A          173 KLTVDKSRWQQGNVFSCSVMHEALHN  198 (207)
T ss_dssp             EEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             EEEECHHHcCCCCEEEEEEEcCCcCC
Confidence            34455555567899999999986543

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.60  E-value=2.7e-14  Score=121.75  Aligned_cols=132  Identities=17%  Similarity=0.207  Sum_probs=103.6

Q ss_pred             CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecC---CCC-CCCCCeeeee--cCCeeEEEeeccccCCCccee
Q psy12425        441 ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD---RPD-PPQFPTVEDI--GHDSLALVWRAPIWDGGSNIT  514 (591)
Q Consensus       441 ~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~---~p~-~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~~~  514 (591)
                      .....+.|.+|.+...|.|++.|.|..|.+..+..+.+..   .|. +|.++.+...  +.+++.|+|++|...+ +.+.
T Consensus        61 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~-g~i~  139 (211)
T 3p4l_A           61 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEAN-GKIT  139 (211)
T ss_dssp             ESSSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCC-SCCC
T ss_pred             CCceEEEecCcCCCCEEEEEEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCC-CCEE
Confidence            3466899999999999999999999998775444344443   344 7777777776  4789999999886444 4899


Q ss_pred             eEEEEeeeCCCC---ceEE-eceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEE
Q psy12425        515 NYIVEKREHPMS---SWIR-VGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT  573 (591)
Q Consensus       515 ~y~v~~~~~~~~---~~~~-~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~  573 (591)
                      +|.|+++.....   .|.. ......+.++|.+|.+++.|.|+|+|.|..|.|++|.++.+.+
T Consensus       140 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~  202 (211)
T 3p4l_A          140 GYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT  202 (211)
T ss_dssp             EEEEEEESCTTSCGGGSEEEEEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEEC
T ss_pred             EEEEEEEECCCCCCCceEEEEecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccC
Confidence            999999876543   3332 2445667999999999999999999999999999999865543

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=99.60  E-value=4.7e-15  Score=112.89  Aligned_cols=95  Identities=25%  Similarity=0.337  Sum_probs=77.5

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe-----ceeeeeEEEEcCcccCceEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-----GNTRFTTMAITGLSPGHQYEFRV  554 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~Y~~~v  554 (591)
                      +.|.+|.++.+...+.+ +.|+|++|..++|.+|.+|.|+|+......|...     .....+.++|.+|.+++.|.|+|
T Consensus         6 ~~P~~P~~~~~~~~~~t-v~l~W~~P~~~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV   84 (122)
T 2e3v_A            6 SGPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL   84 (122)
T ss_dssp             CCCCCCEEEEEEECSSC-EEEEEECCCCC--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTCEEEEEE
T ss_pred             cCCcCCCccEEEecCCc-EEEEECCCCcCCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCCEEEEEE
Confidence            57888988888887777 9999999987788779999999998887778322     12345789999999999999999


Q ss_pred             EEEcCCcCCCCCCCcceEEecc
Q psy12425        555 YAENVYGRSDPSTTSDLITTYG  576 (591)
Q Consensus       555 ~A~n~~G~~~~s~~~~~~~t~~  576 (591)
                      +|.|.+|.|++|....+ ++.+
T Consensus        85 ~A~n~~G~g~~S~~~~~-~t~~  105 (122)
T 2e3v_A           85 AALNGKGLGEISAASEF-KTQP  105 (122)
T ss_dssp             EEEETTEECCCCCCEEE-ECCC
T ss_pred             EEEeCCccCCCcccccc-cccC
Confidence            99999999999998766 4443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.59  E-value=1.3e-14  Score=122.51  Aligned_cols=147  Identities=14%  Similarity=0.068  Sum_probs=103.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCce-EEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPME-VSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.+.|.+. +.|+|+|..+....          ..|.|.+++.+|+|.|+|.+.|.  ..+..
T Consensus        14 p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~   81 (204)
T 3sgj_C           14 PQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQLS--TLSDP   81 (204)
T ss_dssp             SCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETTS--BCCCC
T ss_pred             CCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCCC--ccccc
Confidence            4557899999999999999987765 99999999886543          48999999999999999999874  34556


Q ss_pred             EEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEE
Q psy12425         81 FTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYL  160 (591)
Q Consensus        81 ~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  160 (591)
                      +.|.|...|.....+ ......+..+.|.|....   +.+...+.+.+  .+.    .+........+.|.++...+.+.
T Consensus        82 ~~l~V~~~p~~~~~~-~~~v~~G~~v~L~C~~~~---~~p~~~v~W~k--~g~----~~~~~~~~~~L~i~~v~~~D~G~  151 (204)
T 3sgj_C           82 VQLEVHIGWLLLQAP-RWVFKEEDPIHLRCHSWK---NTALHKVTYLQ--NGK----GRKYFHHNSDFYIPKATLKDSGS  151 (204)
T ss_dssp             EEEEEECSSEEEECS-CSEEETTCCEEEEEEEGG---GCCCEEEEEEE--TTE----EEEEEEECCCEEESSCCGGGCEE
T ss_pred             EEEEEecCceEecCC-ceeEeCCCcEEEEEEecC---CCCCceEEEEE--CCc----EeecccCCceEEECcCCcccCEE
Confidence            777777655322222 234446888999997532   11222233221  111    11112345689999999999999


Q ss_pred             EEEEEEccCC
Q psy12425        161 FHVMAVNENG  170 (591)
Q Consensus       161 ~~~~a~n~~g  170 (591)
                      |+|.|.|..+
T Consensus       152 Y~C~a~n~~~  161 (204)
T 3sgj_C          152 YFCRGLVGSK  161 (204)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEeCCC
Confidence            9999999533

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.59  E-value=1.2e-12  Score=108.32  Aligned_cols=242  Identities=14%  Similarity=0.163  Sum_probs=152.7

Q ss_pred             EEeeccccceeccccEEEEEEEc-CCC---CCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        295 IIVPLRNANAIQNHNAQFQCTIT-GCP---KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       295 ~~~~~~~~~~~~g~~~~l~c~~~-~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      +...|....+..|+.++|+|.+. |.|   ...++|+|++..+..          ....|.+..+...++|.|+|.+.+.
T Consensus         5 Vs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG----------aT~tLti~s~t~sdSG~YqCvVTDa   74 (304)
T 3shs_A            5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN----------NTATLTVADATSENAGSYKVTVQDT   74 (304)
T ss_dssp             EEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC----------CSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC----------CcceEEeeeccccCCeEEEEEEEEC
Confidence            34445667789999999999985 456   458999999877543          2226889999999999999999999


Q ss_pred             CcceeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEee--ec-cC-----CCeEEEeeCCeEeeeccceEEEecCC
Q psy12425        371 GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF--TG-YP-----KPKITWYRDNEVIESGGHFHVETSER  442 (591)
Q Consensus       371 ~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~--~~-~p-----~~~v~W~~~~~~~~~~~~~~~~~~~~  442 (591)
                      .|....+..+.|...+.+......+....+..+..+.|.+.+  .| .|     ..+++|++++..+.           .
T Consensus        75 ~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Is-----------g  143 (304)
T 3shs_A           75 DTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID-----------T  143 (304)
T ss_dssp             TTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEE-----------S
T ss_pred             CCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEcc-----------C
Confidence            887765555555554332111111233345667888998887  43 34     46999999997653           3


Q ss_pred             eeEEEEeccCCCcceeEEEEEEcCCCcc--ceEEEEEecCCCCCCCCCee-eeecCCeeEEEeeccc----cCCCcc--e
Q psy12425        443 HAILTIRDASNVDTAPYRVVAENDLGMD--SAIVKIQISDRPDPPQFPTV-EDIGHDSLALVWRAPI----WDGGSN--I  513 (591)
Q Consensus       443 ~~~l~i~~~~~~~~g~y~c~a~n~~g~~--~~~~~~~v~~~p~~p~~~~~-~~~~~~~v~l~W~~p~----~~~~~~--~  513 (591)
                      ...|++..+...++|.|+|.+.|..|..  +..+.+.+.+.+-+-..+.- ....++.+.|..-...    +..|.+  .
T Consensus       144 Aq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (304)
T 3shs_A          144 TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLT  223 (304)
T ss_dssp             SSEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEE
T ss_pred             ccccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceE
Confidence            4467777888899999999999998754  55555666554433332222 2234556666554322    122222  3


Q ss_pred             eeEEEEeeeCCCCceEEece---e--------eeeEEEEcCcccCceEEEEEEEE
Q psy12425        514 TNYIVEKREHPMSSWIRVGN---T--------RFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       514 ~~y~v~~~~~~~~~~~~~~~---~--------~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      ..|.++.+..+...-..++.   .        ....+.-....-.+.-.|.|.|.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (304)
T 3shs_A          224 IKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK  278 (304)
T ss_dssp             EEEEEEEECTTCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEEEeecCccCchhhhhhhhhhhccceeCCCcceeecccccccchheeeHHH
Confidence            46777666555443333211   0        11123333445556778888874

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.59  E-value=4.7e-14  Score=124.07  Aligned_cols=242  Identities=11%  Similarity=0.039  Sum_probs=108.7

Q ss_pred             ccccceeccccEEEEEEEcCCCCCeeEEecC--CccC-CCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREI-TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS  375 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~  375 (591)
                      +.+..+.+|+.+.|+|.+.......+.|...  ...+ ..+.        ....+.+.++..+  +.|+|.+....-...
T Consensus         6 P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g~--------~~~~~~l~~v~~~--~~y~C~~~~~~~~~~   75 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGN--------NRKVYELSNVQED--SQPMCYSNCPDGQST   75 (291)
T ss_dssp             CSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSCS--------SEEEEEEESCCSC--CCCEEEEECSSCEEE
T ss_pred             CCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCCC--------ceEEEEEEecccC--CeEEEEEEcCCccEE
Confidence            3456789999999999997543334888642  1111 1111        1224778888743  569999975544456


Q ss_pred             eeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeeccCC-C--eEEEeeCCeEeeeccceEEEecCCeeEEEEeccC
Q psy12425        376 TKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK-P--KITWYRDNEVIESGGHFHVETSERHAILTIRDAS  452 (591)
Q Consensus       376 ~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~-~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  452 (591)
                      ..+.+.|..+|....-..  ....+..|+.++|.|.+.+..+ .  .|.|++++..+.....   ........|.+....
T Consensus        76 ~~v~l~V~~~P~~v~I~~--~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~~~~  150 (291)
T 1mq8_A           76 AKTFLTVYWTPERVELAP--LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRR  150 (291)
T ss_dssp             EECEEEECBCCSCCCBCC--CCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECCCSS
T ss_pred             EEEEEEEecCCCCCEEec--CCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC---CCCCceEEEEeeeee
Confidence            677888888776532211  1133678999999999987544 3  5899999988764321   111223456667677


Q ss_pred             CCcceeEEEEEEcCCCc--------cceEEEEEecCCCCCCCCCee--eeecCCeeEEEeeccccCCCcceeeEEEEeee
Q psy12425        453 NVDTAPYRVVAENDLGM--------DSAIVKIQISDRPDPPQFPTV--EDIGHDSLALVWRAPIWDGGSNITNYIVEKRE  522 (591)
Q Consensus       453 ~~~~g~y~c~a~n~~g~--------~~~~~~~~v~~~p~~p~~~~~--~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~  522 (591)
                      .++.+.|+|+|.|..+.        .+....+.|..+|.....+..  .-..++.++|+|..   ++..+.....+.|..
T Consensus       151 ~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~---~g~~P~~~~~v~w~~  227 (291)
T 1mq8_A          151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL---DGLFPVSEAQVHLAL  227 (291)
T ss_dssp             SCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----------------------------------------------
T ss_pred             ccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEc---CCCCCCcccEEEEEE
Confidence            77778999999998663        255567777776533221111  11246788999985   232233333444443


Q ss_pred             CCCCceEE-eceeeeeEEEEcCc----c-cCceEEEEEEEEcCC
Q psy12425        523 HPMSSWIR-VGNTRFTTMAITGL----S-PGHQYEFRVYAENVY  560 (591)
Q Consensus       523 ~~~~~~~~-~~~~~~~~~~i~~l----~-~~~~Y~~~v~A~n~~  560 (591)
                      .+...-.. ...++  .+.+..+    . ....|+++|.|.|..
T Consensus       228 ~g~~l~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~C~~~~~~  269 (291)
T 1mq8_A          228 GDQRLNPTVTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGN  269 (291)
T ss_dssp             --------------------------------------------
T ss_pred             CCEecCceeeecCC--eEEEEEecceeEcCCCCEEEEEEEEeCC
Confidence            32211101 11111  2223222    2 356899999998733

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1e-14  Score=108.14  Aligned_cols=84  Identities=13%  Similarity=0.225  Sum_probs=75.2

Q ss_pred             eeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425          5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN   84 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~   84 (591)
                      +.+.+|+++.|.|.+.+.|.+ +.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.|.|..    ..+.|.
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~----~~~~l~   94 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVS----AFFGVT   94 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCC----CCEEEE
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCce----EEEEEE
Confidence            789999999999999999888 999999999988888888888888899999999999999999999873    367888


Q ss_pred             EecCCCCCC
Q psy12425         85 ITGLPGPPI   93 (591)
Q Consensus        85 v~~~p~~p~   93 (591)
                      |..+|.+|.
T Consensus        95 V~~~P~pp~  103 (104)
T 2e6p_A           95 VQDPSGPSS  103 (104)
T ss_dssp             EECCCCSSC
T ss_pred             EcCCCCCcC
Confidence            888887664

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.58  E-value=1.2e-13  Score=121.61  Aligned_cols=141  Identities=14%  Similarity=0.147  Sum_probs=97.9

Q ss_pred             ceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCC----------CccCCCeEEeeccccceeccccEEEEEEE
Q psy12425        247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP----------MAAKAPEIIVPLRNANAIQNHNAQFQCTI  316 (591)
Q Consensus       247 ~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~----------~~~~~p~~~~~~~~~~~~~g~~~~l~c~~  316 (591)
                      ..|.|.+++..|+|.|.|.+.|..+...  .....+.+...          ....+|.+...+....+.+|+.+.|.|.+
T Consensus        80 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  157 (253)
T 3uzq_A           80 AYLHLSSLTSGDTAVYYCSRGWEGFAYW--GQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRA  157 (253)
T ss_dssp             EEEEECSCCGGGCEEEEEEECSSSCCEE--CCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEE
T ss_pred             EEEEeCCCCcccCEEEEEEEeeCCccEE--CCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEe
Confidence            4599999999999999999998544321  12344555431          12235677777777889999999999999


Q ss_pred             cCCCCC----eeEEecCC--ccCC------------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eee
Q psy12425        317 TGCPKP----TISWLKGS--REIT------------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STK  377 (591)
Q Consensus       317 ~~~p~~----~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~  377 (591)
                      .+.+.+    .+.|+++.  ....            ...++.....+...+|.|.+++.+|+|.|+|.|.|..+.. ...
T Consensus       158 ~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~g  237 (253)
T 3uzq_A          158 SENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGG  237 (253)
T ss_dssp             SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCC
T ss_pred             cCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCC
Confidence            998886    89999842  2111            1245555566677789999999999999999999976544 344


Q ss_pred             eEEEEecCCccc
Q psy12425        378 AELIIMTAPKFN  389 (591)
Q Consensus       378 ~~l~v~~~p~~~  389 (591)
                      ..|.|...+.+.
T Consensus       238 t~l~v~~~~~~~  249 (253)
T 3uzq_A          238 TKLEIKRPLEHH  249 (253)
T ss_dssp             EEEEECCC----
T ss_pred             EEEEEcCCCCCc
Confidence            667776655443

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.58  E-value=1.2e-13  Score=115.11  Aligned_cols=125  Identities=20%  Similarity=0.221  Sum_probs=102.1

Q ss_pred             EecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEE
Q psy12425        438 ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYI  517 (591)
Q Consensus       438 ~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~  517 (591)
                      ........+.|.+|.+...|.|++.|.|..|. +....+.+...|.+|.++.+...+.+++.|+|.+|.    +.+.+|.
T Consensus        52 ~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~~~-s~~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~  126 (186)
T 1qr4_A           52 EIPVDSTSFILRGLDAGTEYTISLVAEKGRHK-SKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPR----SRVDSYR  126 (186)
T ss_dssp             EECTTCSEEEEESCCSSCEEEEEEEEESSSCB-CCCEEEEEECCCCCCSCEEEESCCSSCEEEEECCCS----SCCSEEE
T ss_pred             ECCCCCCEEEECCCCCCCEEEEEEEEEcCCcc-CCCEEEEEECCCCCCCccEEEEeCCCEEEEEEECCC----CcccEEE
Confidence            33445678999999999999999999997554 445667777789999999999999999999999863    3689999


Q ss_pred             EEeeeCCCCceEEe-ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCC
Q psy12425        518 VEKREHPMSSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST  567 (591)
Q Consensus       518 v~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~  567 (591)
                      |.|+......+... .......+.|.+|.|++.|.|+|+|.|..|.|++..
T Consensus       127 v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~  177 (186)
T 1qr4_A          127 VSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPIS  177 (186)
T ss_dssp             EEEEETTCCCCEEEEEETTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE
T ss_pred             EEEEeCCCCCceEEEcCCCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCEE
Confidence            99987765444333 445668999999999999999999999999887643

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=9e-15  Score=108.93  Aligned_cols=102  Identities=28%  Similarity=0.367  Sum_probs=85.1

Q ss_pred             ecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCC-ceEEeceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS-SWIRVGNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       478 v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      +.++|.+|.++.+...+.+++.|+|.++   ++..+.+|.|+|+..... .|..+.......+.|.+|.+++.|.|+|+|
T Consensus         4 ~~~~P~~P~~~~~~~~~~~sv~l~W~~~---~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   80 (106)
T 2dju_A            4 GSSGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLA   80 (106)
T ss_dssp             CCCSCCCCEEEEEEEEETTEEEEEEECC---CSSCCSEEEEEEEETTCCSCCCCBCCCCSSEEEEESCCTTCEEEEEEEE
T ss_pred             CCcCCcCCCCcEEEeccCCEEEEEEcCC---CCCCceEEEEEEEECCCCCCeEEccCCCccEEEEeCCCCCcEEEEEEEE
Confidence            3467899999999988999999999976   345799999999876543 676666566778999999999999999999


Q ss_pred             EcCCcCCCCCCCcceEEeccccccCCC
Q psy12425        557 ENVYGRSDPSTTSDLITTYGELLSGME  583 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~~~t~~~~p~~~~  583 (591)
                      .|..|.|.+|..+. ++|.+.+|..||
T Consensus        81 ~n~~G~~~~S~~~~-~~T~~~~P~~Pp  106 (106)
T 2dju_A           81 VNSIGRGPPSEAVR-ARTGEQSGPSSG  106 (106)
T ss_dssp             ECSSCBCCCCCCEE-EECCCSSCCCCC
T ss_pred             EeCCccCCCcccEE-eEcCCCCCCCCC
Confidence            99999999998765 477777777664

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.58  E-value=4.8e-15  Score=105.20  Aligned_cols=68  Identities=10%  Similarity=0.108  Sum_probs=61.9

Q ss_pred             eeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      +.+.+|+++.|.|.+.+ |.+.+.|+|||+.|..+.++++...+...+|.|.+++.+|+|.|+|.|.|.
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            45578999999999965 888999999999999999999998888899999999999999999999765

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.58  E-value=4.2e-14  Score=122.11  Aligned_cols=175  Identities=17%  Similarity=0.193  Sum_probs=111.8

Q ss_pred             ccccceeccccEEEEEEEcCC--CCCeeEEecCC--ccCC----------------CCCceEEEEeC--CeEEEEEccee
Q psy12425        299 LRNANAIQNHNAQFQCTITGC--PKPTISWLKGS--REIT----------------PSARHHIFAEG--DTYTLIINSVY  356 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~~--~~~~----------------~~~~~~~~~~~--~~~~l~i~~~~  356 (591)
                      +..+.+.+|+.+.|.|.+.+.  +.+.+.|++..  ....                ...++.+..+.  ...+|.|.+++
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (230)
T 1ypz_F            8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (230)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCC
Confidence            345668899999999999875  56789998742  1110                12344444332  46789999999


Q ss_pred             cccceEEEEEEEeC--Cc--ceeeeeEEEEec---------CCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEE
Q psy12425        357 GVDADEYVCRAVNK--GG--VKSTKAELIIMT---------APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKIT  421 (591)
Q Consensus       357 ~~d~g~y~c~a~n~--~g--~~~~~~~l~v~~---------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~  421 (591)
                      .+|+|.|.|.+.+.  ..  .......|.|..         +|...+.+  .....+..|..+.|.|.+.+. |. +.|.
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~--p~~~~v~~g~~~~L~C~~~g~~P~~~~v~  165 (230)
T 1ypz_F           88 EEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL--PSVAETNLHKTGTYLCLLEAFFPDVIRVY  165 (230)
T ss_dssp             GGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC--CCHHHHHHHSCEEEEEEEEEESSCCCEEE
T ss_pred             hhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC--CCchhhccCCcceEEEEEeeecCCCeEEE
Confidence            99999999999885  11  112345677762         12211110  111223468899999999986 75 5999


Q ss_pred             Eee-CCeEeeeccceEEEecCC----eeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        422 WYR-DNEVIESGGHFHVETSER----HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       422 W~~-~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      |++ +|..+.......+...+.    .+.|+|..... + |.|+|.|.|..+.......+.
T Consensus       166 W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~~~~~~~  224 (230)
T 1ypz_F          166 WKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGGADQAIF  224 (230)
T ss_dssp             EECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTTSCEEEE
T ss_pred             EEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCceeEeee
Confidence            999 777654221111111111    35688877775 4 999999999987654444443

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.58  E-value=1.1e-13  Score=120.33  Aligned_cols=170  Identities=14%  Similarity=0.232  Sum_probs=107.8

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecCCcc--C---------------CCCCceEEEE-eCCeEEEEEcceecc
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE--I---------------TPSARHHIFA-EGDTYTLIINSVYGV  358 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~--~---------------~~~~~~~~~~-~~~~~~l~i~~~~~~  358 (591)
                      ..+..+.+.+|+.+.|.|.+. .+.+.+.|+++...  .               ....++.+.. .+...+|.|.+++.+
T Consensus         4 q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~   82 (238)
T 1bec_A            4 QSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPS   82 (238)
T ss_dssp             EECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGG
T ss_pred             cCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcc
Confidence            344566789999999999995 45789999985321  0               0123444443 244678999999999


Q ss_pred             cceEEEEEEEeCCc---c--eeeeeEEEEecC------CcccCCCCcccceeecCCCeEEEEEeeecc-CCC-eEEEeeC
Q psy12425        359 DADEYVCRAVNKGG---V--KSTKAELIIMTA------PKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKP-KITWYRD  425 (591)
Q Consensus       359 d~g~y~c~a~n~~g---~--~~~~~~l~v~~~------p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~-~v~W~~~  425 (591)
                      |+|.|.|.+.|..+   .  ......|.|...      |.+...+.  ....+..|+.+.|.|.+.|. |.+ .+.|+++
T Consensus        83 D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~--~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  160 (238)
T 1bec_A           83 QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEP--SKAEIANKQKATLVCLARGFFPDHVELSWWVN  160 (238)
T ss_dssp             GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECC--CSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred             cCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECC--ChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence            99999999998742   1  123356777653      33321110  11224578999999999986 654 9999999


Q ss_pred             CeEeeeccceE---EEecCCe----eEEEEeccCCC-cceeEEEEEEcCCCc
Q psy12425        426 NEVIESGGHFH---VETSERH----AILTIRDASNV-DTAPYRVVAENDLGM  469 (591)
Q Consensus       426 ~~~~~~~~~~~---~~~~~~~----~~l~i~~~~~~-~~g~y~c~a~n~~g~  469 (591)
                      |..+..+....   ....+..    ..|.|...... +.+.|+|.|.|....
T Consensus       161 g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  212 (238)
T 1bec_A          161 GKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLS  212 (238)
T ss_dssp             TEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCC
T ss_pred             CEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCC
Confidence            98876443211   1111221    22333333322 367899999998543

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.58  E-value=1.7e-14  Score=121.34  Aligned_cols=159  Identities=14%  Similarity=0.160  Sum_probs=100.0

Q ss_pred             eeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee--EEEEE
Q psy12425          5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV--SGTFT   82 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~--~~~~~   82 (591)
                      ..|.+|++++|.|.+.+.|. .+.|+|+|..+....+ ..........|.|.+++.+|+|.|+|.|.|..|..  +..+.
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~   91 (196)
T 2d3v_A           14 SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLE   91 (196)
T ss_dssp             SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEE
T ss_pred             CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEE
Confidence            37899999999999988765 9999999987643211 01113355789999999999999999999987754  34578


Q ss_pred             EEEecCCCCCCCC--cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEE-e---ecCcceEEEcCCcCC
Q psy12425         83 INITGLPGPPIGP--LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIS-T---TCHDTTFIVQGLTEG  156 (591)
Q Consensus        83 l~v~~~p~~p~~~--~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~-~---~~~~~~~~i~~l~~~  156 (591)
                      |.|...+..|...  .......+..++|.|.....    + ..+.+.+............ .   ......|.|.++...
T Consensus        92 l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~----p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  166 (196)
T 2d3v_A           92 LVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLR----F-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPS  166 (196)
T ss_dssp             EEEECSSCCCEEEC-----------CEEEEEESSC----C-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTT
T ss_pred             EEecCCCCCCeEEccCCccccCCCcEEEEEEcCCC----C-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcc
Confidence            8887744333310  11234467789999975432    2 2233332221111111100 0   112368999999999


Q ss_pred             cEEEEEEEEEccCC
Q psy12425        157 QEYLFHVMAVNENG  170 (591)
Q Consensus       157 ~~y~~~~~a~n~~g  170 (591)
                      +.+.|+|.|.|..+
T Consensus       167 D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          167 HRWMLRCYGSRRHI  180 (196)
T ss_dssp             BCEEEEEEEEETTE
T ss_pred             cCeeEEEEEEccCC
Confidence            99999999998754

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=4e-15  Score=114.44  Aligned_cols=116  Identities=26%  Similarity=0.323  Sum_probs=93.3

Q ss_pred             EEEEEEcCCCccceEEEEEec---CCCC-CCCCCeeeeecCCeeEEEeeccccC-CCcceeeEEEEeeeCCCCceEEece
Q psy12425        459 YRVVAENDLGMDSAIVKIQIS---DRPD-PPQFPTVEDIGHDSLALVWRAPIWD-GGSNITNYIVEKREHPMSSWIRVGN  533 (591)
Q Consensus       459 y~c~a~n~~g~~~~~~~~~v~---~~p~-~p~~~~~~~~~~~~v~l~W~~p~~~-~~~~~~~y~v~~~~~~~~~~~~~~~  533 (591)
                      ++|.|.|..|.+..+..+.+.   ..|. +|.++.+...+.+++.|+|++|..+ .++.+.+|.|+|+......|.....
T Consensus         2 ~~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~   81 (124)
T 2ed9_A            2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLE   81 (124)
T ss_dssp             CSCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCCEEEEC
T ss_pred             CeEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcceEEec
Confidence            457788999987555444443   3455 7888999988999999999988653 4558999999999887777766656


Q ss_pred             eeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEec
Q psy12425        534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       534 ~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~  575 (591)
                      .....+.|.+|.|++.|.|+|+|.|..|.|++|....+ +|.
T Consensus        82 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~-~T~  122 (124)
T 2ed9_A           82 PNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTA-ETP  122 (124)
T ss_dssp             SSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEE-ECC
T ss_pred             CCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEE-ECC
Confidence            66789999999999999999999999999999988654 443

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=5.6e-15  Score=109.18  Aligned_cols=93  Identities=27%  Similarity=0.373  Sum_probs=77.6

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEE----e-ceeeeeEEEEcCcccCceEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR----V-GNTRFTTMAITGLSPGHQYEFRV  554 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~----~-~~~~~~~~~i~~l~~~~~Y~~~v  554 (591)
                      +.|++|..+.+...+.. +.|+|++|..++|.+|.+|+|+|+......|..    + .....+.++|.+|.|++.|.|+|
T Consensus         5 ~~P~~P~~~~~~~~~~~-v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV   83 (105)
T 2haz_A            5 DTPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL   83 (105)
T ss_dssp             CCCCCCEEEEEEECSSC-EEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEE
T ss_pred             CCCcCCCCCEEEEcCCc-EEEEEcCCcccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCEEEEEE
Confidence            57888888888887777 999999998778877999999999887776742    2 12255789999999999999999


Q ss_pred             EEEcCCcCCCCCCCcceEE
Q psy12425        555 YAENVYGRSDPSTTSDLIT  573 (591)
Q Consensus       555 ~A~n~~G~~~~s~~~~~~~  573 (591)
                      +|.|.+|.|++|....+.|
T Consensus        84 ~A~n~~G~g~~S~~~~~~T  102 (105)
T 2haz_A           84 AALNGKGLGEISAASEFKT  102 (105)
T ss_dssp             EEEETTEECCCCCCEEEEC
T ss_pred             EEEcCCccCCCcCCEeeEE
Confidence            9999999999999876533

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=6.7e-15  Score=108.37  Aligned_cols=87  Identities=18%  Similarity=0.326  Sum_probs=75.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCC-ceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQP-MEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |.++.+.+|+++.|.|.+.+.|. +.+.|+|||..+..+.++++...+...+|.|.+++.+|+|.|+|.|.|    ...+
T Consensus        15 ~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~   90 (104)
T 2eny_A           15 LKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG----LTSK   90 (104)
T ss_dssp             CCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT----EEEE
T ss_pred             CCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC----eeEE
Confidence            56789999999999999998774 489999999999888899888888888999999999999999999854    4567


Q ss_pred             EEEEEecCCCCC
Q psy12425         81 FTINITGLPGPP   92 (591)
Q Consensus        81 ~~l~v~~~p~~p   92 (591)
                      +.|.|..+|..+
T Consensus        91 a~L~V~~~p~~~  102 (104)
T 2eny_A           91 ASLIVRERSGPS  102 (104)
T ss_dssp             ECEEEECCCSSC
T ss_pred             EEEEEeCCCcCC
Confidence            889998877544

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=8.9e-15  Score=108.19  Aligned_cols=87  Identities=13%  Similarity=0.313  Sum_probs=77.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.+ |.+.+.|+|++..+....++.+...+....|.|.+++.+|+|.|+|.|.|    ....+
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~   89 (103)
T 2edf_A           15 LEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA----SKSTA   89 (103)
T ss_dssp             CCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS----CEEEE
T ss_pred             CCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc----CCcEE
Confidence            56789999999999999997 78899999999999888888888888888999999999999999999998    36778


Q ss_pred             EEEEecCCCCCC
Q psy12425         82 TINITGLPGPPI   93 (591)
Q Consensus        82 ~l~v~~~p~~p~   93 (591)
                      .|.|...|.+|.
T Consensus        90 ~l~V~~~p~~~~  101 (103)
T 2edf_A           90 SLHVEEKASGPS  101 (103)
T ss_dssp             EEEECCCSSSSC
T ss_pred             EEEEeCCCCCCC
Confidence            899988877654

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.57  E-value=1.3e-14  Score=145.01  Aligned_cols=165  Identities=15%  Similarity=0.219  Sum_probs=117.1

Q ss_pred             cceeccccEEEEEEE-cCCCCCeeEEecCCccCCC------------CCceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        302 ANAIQNHNAQFQCTI-TGCPKPTISWLKGSREITP------------SARHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      ..+..|+.+.|.|.+ .+.|.+.+.|++++..+..            ..+..+..++   +|.|.+++.+|+|.|+|.+.
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D~G~Y~C~~~  452 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG---SLFLPAVGIQDEGIFRCQAM  452 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS---CEEESSCCGGGCEEEEEEEE
T ss_pred             cceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc---eEEEeccccccCeEEEEEEE
Confidence            457789999999999 8899999999997653211            1233333333   79999999999999999999


Q ss_pred             eCCcce-eeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeec-cCCCeEEEeeCCeEeeecc-ceEEE----e--
Q psy12425        369 NKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTG-YPKPKITWYRDNEVIESGG-HFHVE----T--  439 (591)
Q Consensus       369 n~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~~~-~~~~~----~--  439 (591)
                      |..|.. ...+.|.|..+|..+.... ........+..+.|.|.+.+ .|.|.+.|+++|..+.... .+.+.    .  
T Consensus       453 n~~~~~~~~~~~l~V~~~~~~p~i~~-~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~  531 (581)
T 3o3u_N          453 NRNGKETKSNYRVRVYQIPGKPEIVD-SASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHP  531 (581)
T ss_dssp             CTTSCEEEEEEEEEEEBCCCCCEEES-CCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECT
T ss_pred             cCCCceeEEEEEEEEEcCCCCCEEEc-CCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcC
Confidence            999887 6778888887554321111 01112233445567999988 5999999999999886432 22221    1  


Q ss_pred             cC----CeeEEEEeccC-CCcceeEEEEEEcCCCcc
Q psy12425        440 SE----RHAILTIRDAS-NVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       440 ~~----~~~~l~i~~~~-~~~~g~y~c~a~n~~g~~  470 (591)
                      ..    -.+.|.|..+. .++.+.|+|.|.|..+..
T Consensus       532 ~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          532 ETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             TTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             CCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence            11    13679999988 556899999999997654

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.57  E-value=1.9e-14  Score=107.43  Aligned_cols=93  Identities=28%  Similarity=0.432  Sum_probs=70.9

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeC-CCCceEEece-------------eeeeEEEEcCcc
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH-PMSSWIRVGN-------------TRFTTMAITGLS  545 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~-~~~~~~~~~~-------------~~~~~~~i~~l~  545 (591)
                      .+|++|.   +..++.+++.|+|.+|.++| .+|++|.|+++.. ....|.....             ...+.+++.+|.
T Consensus         4 ~pP~~P~---v~~~~~~sv~L~W~~P~~~G-~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~   79 (115)
T 2ic2_A            4 YPPTPPN---VTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLK   79 (115)
T ss_dssp             CCCCCCE---EEECC---EEEEEEEECCSS-CCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCC
T ss_pred             CCCCcCE---eEEEeCCEEEEEEcCCCCCC-CCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCCCC
Confidence            4566665   77889999999999887555 7999999999987 4577876532             345689999999


Q ss_pred             cCceEEEEEEEEcCCcCCCCCCCcceEEecc
Q psy12425        546 PGHQYEFRVYAENVYGRSDPSTTSDLITTYG  576 (591)
Q Consensus       546 ~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~  576 (591)
                      |++.|.|||+|.|.+|.|.+|..+..+.+..
T Consensus        80 p~t~Y~FRV~A~N~~G~~~pS~~S~~~~~~~  110 (115)
T 2ic2_A           80 PQHTYRFRILAVYSNNDNKESNTSAKFYLQP  110 (115)
T ss_dssp             SSEEEEEEEEEEETTSCEEECCCCCCEEECC
T ss_pred             CCCEEEEEEEEEeCCCCCCCCCCCCCEEeCC
Confidence            9999999999999999988888777666553

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.57  E-value=5.2e-14  Score=115.95  Aligned_cols=147  Identities=14%  Similarity=0.039  Sum_probs=102.0

Q ss_pred             CceeeeecCCeEEEEEEeccCCCce-EEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPME-VSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.+.|.+. +.|+|+|..+...          ...|.|.+++.+|+|.|+|.+.|..+  +..
T Consensus        14 p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~----------~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~   81 (175)
T 1fnl_A           14 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNLSTL--SDP   81 (175)
T ss_dssp             SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSSSCC--CCC
T ss_pred             CCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC----------ceEEEEeCCCcccCEEEEEEeeCCcc--ccc
Confidence            4567899999999999999987766 8999999987642          33899999999999999999998654  445


Q ss_pred             EEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEE
Q psy12425         81 FTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYL  160 (591)
Q Consensus        81 ~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  160 (591)
                      +.|.|...+.....+ ......+..+.|.|....   +.+...+.+.+  .+.    .+........+.|.++...+.+.
T Consensus        82 ~~l~V~~~~~~~~~~-~~~~~~g~~~~l~C~~~~---~~~~~~~~W~k--~g~----~~~~~~~~~~L~i~~v~~~d~G~  151 (175)
T 1fnl_A           82 VQLEVHIGWLLLQAP-RWVFKEEDPIHLRCHSWK---NTALHKVTYLQ--NGK----DRKYFHHNSDFHIPKATLKDSGS  151 (175)
T ss_dssp             EEEEEECSSEEEECS-CSEEETTCCEEEEEEECT---TCCCEEEEEEE--TTE----EEEEEEECCCEEESSCCGGGCEE
T ss_pred             EEEEEeCCCceeeCC-CceecCCCCEEEEEEcCC---CCCceEEEEEE--CCe----EccCCCCCCEEEEcccChhhCeE
Confidence            666666432211111 233456788999997533   11222233322  111    11122346789999999999999


Q ss_pred             EEEEEEccCC
Q psy12425        161 FHVMAVNENG  170 (591)
Q Consensus       161 ~~~~a~n~~g  170 (591)
                      |+|.|.|..|
T Consensus       152 Y~C~a~n~~~  161 (175)
T 1fnl_A          152 YFCRGLVGSK  161 (175)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEcCCC
Confidence            9999998654

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.57  E-value=5.3e-14  Score=119.94  Aligned_cols=173  Identities=11%  Similarity=0.020  Sum_probs=108.6

Q ss_pred             EeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCc--eeeecCcccCCcEEEEEEEEcCCCCCCCC
Q psy12425        199 TQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS--QINIPNLIEGRQYEFRVYAQNEAGLSLPS  276 (591)
Q Consensus       199 ~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~l~~~~~~~y~c~a~n~~g~~~~s  276 (591)
                      ....|..++|.|....  ....+.+|. +........ ... .......  .|.|.++...|.|.|+|.|.|..|....+
T Consensus        19 ~v~~G~~vtL~C~~~~--~~~~~~W~k-~g~~~~~~~-~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s   93 (218)
T 1uct_A           19 VIPLDGSVKIQCQAIR--EAYLTQLMI-IKNSTYREI-GRR-LKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYS   93 (218)
T ss_dssp             EEETTCCEEEEECCCT--TCSEEEEEE-EETTEEEEC-SEE-CC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEEC
T ss_pred             ccCCCCCEEEEEEcCC--CCCEEEEEE-CCCcccccc-ccc-CCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeec
Confidence            4567899999998753  111222221 111000000 000 0011234  89999999999999999999976533222


Q ss_pred             CCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEccee
Q psy12425        277 SASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY  356 (591)
Q Consensus       277 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  356 (591)
                       ....+.+..  ...+|.+...+ ...+.+|+.+.|.|.+.+.+.+.+.|++++..+...    .........|.|.+++
T Consensus        94 -~~~~l~V~~--~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~----~~~~~~~~~L~I~~v~  165 (218)
T 1uct_A           94 -DTLELVVTG--LYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLGPVD  165 (218)
T ss_dssp             -CCEEEEEEC--SSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSSEEEECCSCC
T ss_pred             -CCEEEEEcC--cccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc----ccCCCccCEEEEccCC
Confidence             334444442  12456665544 456789999999998778888899999998876541    1123345689999999


Q ss_pred             cccceEEEEEEEeCCcc-----eeeeeEEEEec
Q psy12425        357 GVDADEYVCRAVNKGGV-----KSTKAELIIMT  384 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~-----~~~~~~l~v~~  384 (591)
                      .+|+|.|+|.|.|....     .+....|.|..
T Consensus       166 ~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          166 LNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             GGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             cccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            99999999999986421     23445565554

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.57  E-value=3.2e-14  Score=113.78  Aligned_cols=92  Identities=18%  Similarity=0.193  Sum_probs=78.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeC-CeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLD-DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|++..+....++.+.... ....|.|.+++..|+|.|+|.|.|..|.....
T Consensus        48 ~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  127 (154)
T 1fhg_A           48 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT  127 (154)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEE
Confidence            56789999999999999999999999999999999888887776543 35799999999999999999999999999999


Q ss_pred             EEEEEecCCCCCC
Q psy12425         81 FTINITGLPGPPI   93 (591)
Q Consensus        81 ~~l~v~~~p~~p~   93 (591)
                      +.|.|...|....
T Consensus       128 ~~l~V~~~p~~~~  140 (154)
T 1fhg_A          128 AELLVETMGKEGE  140 (154)
T ss_dssp             EEEEEECC-----
T ss_pred             EEEEEeCcCcCCC
Confidence            9999998776544

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.57  E-value=5.6e-14  Score=116.70  Aligned_cols=151  Identities=14%  Similarity=0.094  Sum_probs=103.8

Q ss_pred             EeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCC
Q psy12425        199 TQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA  278 (591)
Q Consensus       199 ~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~  278 (591)
                      ....|+.++|.|.... + ...+.+     ...+..       .......|.|.++...|.|.|+|.|.|..|....+ .
T Consensus        18 ~v~~G~~v~L~C~~~~-~-~~~~~W-----~k~g~~-------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s-~   82 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPP-G-VDLYRL-----EKLSSS-------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPS-D   82 (184)
T ss_dssp             EEETTCCEEEEEECST-T-CSEEEE-----EETTTC-------CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCC-C
T ss_pred             cccCCCcEEEEEeCCC-C-CCEEEE-----EECCcc-------ccCcccEEEECcCChhhCceEEEEEEcCCCccCCC-C
Confidence            4567889999999743 1 111221     122221       12356789999999999999999999977643222 3


Q ss_pred             cceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecc
Q psy12425        279 SNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV  358 (591)
Q Consensus       279 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  358 (591)
                      ...+.+..  ...+|.+...+ ...+.+|+.+.|.|.+.+.+ +.+.|++++..+.......    .....|.|.++..+
T Consensus        83 ~~~l~V~~--~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~----~~~~~L~i~~v~~~  154 (184)
T 2gi7_A           83 QLELVATG--VFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPER----WYRASFPIITVTAA  154 (184)
T ss_dssp             CEEEEEES--SSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCE----EEEESSSEEEETTC
T ss_pred             CEEEEecC--cCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCC----CceEEEEEccCCcc
Confidence            34444432  12456666555 45678999999999987765 5999999988775422211    12236899999999


Q ss_pred             cceEEEEEEEeCCc
Q psy12425        359 DADEYVCRAVNKGG  372 (591)
Q Consensus       359 d~g~y~c~a~n~~g  372 (591)
                      |+|.|+|.|.|..+
T Consensus       155 D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          155 HSGTYRCYSFSSRD  168 (184)
T ss_dssp             CSEEEEEEEECTTS
T ss_pred             CCeEEEEEEEeCCC
Confidence            99999999999765

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.57  E-value=2.6e-14  Score=105.03  Aligned_cols=83  Identities=16%  Similarity=0.214  Sum_probs=70.4

Q ss_pred             ecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEE--EeC---CeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425          8 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFT--VLD---DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         8 ~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~---~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      ..|+.+.|.|.+.|.|.|.++|+|+|+.+..+.+....  ..+   ...+|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            45888999999999999999999999999877654332  211   1246999999999999999999999999999999


Q ss_pred             EEEecCCC
Q psy12425         83 INITGLPG   90 (591)
Q Consensus        83 l~v~~~p~   90 (591)
                      |.|...|.
T Consensus        94 l~V~~~P~  101 (103)
T 1wwb_X           94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEECCCCC
Confidence            99988775

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.57  E-value=4.1e-13  Score=118.01  Aligned_cols=134  Identities=14%  Similarity=0.125  Sum_probs=97.0

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCC--CCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCC-
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLS--LPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-  322 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~--~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-  322 (591)
                      ...|.|.+++..|.|.|.|.+.|..|..  ........+.+.     .+|.+...+....+.+|+.+.|.|.+.+.|.+ 
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~-----~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~  152 (256)
T 1nqb_A           78 TAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS-----SDIELTQTPLSLPVSLGDQASISCRSSQSIVHS  152 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC-----CCCCEEEECSEEEECTTCCEEEEEEESSCCBCT
T ss_pred             EEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeec-----ccccEEecCcEEEEecCCcEEEEeEecCccccc
Confidence            3589999999999999999999986631  111123445554     34566666667778999999999999998875 


Q ss_pred             ----eeEEec--CCccCC------------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeeeEEEEe
Q psy12425        323 ----TISWLK--GSREIT------------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAELIIM  383 (591)
Q Consensus       323 ----~v~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~l~v~  383 (591)
                          .+.|++  ++..+.            ...++.....+...+|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus       153 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          153 NGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             TSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence                999999  454331            1345555556667799999999999999999999854432 334556664


Q ss_pred             c
Q psy12425        384 T  384 (591)
Q Consensus       384 ~  384 (591)
                      .
T Consensus       233 ~  233 (256)
T 1nqb_A          233 R  233 (256)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.6e-14  Score=105.30  Aligned_cols=93  Identities=18%  Similarity=0.332  Sum_probs=83.6

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+.+..+.+|+.+.|.|.+  .|.+.+.|++++..+..+.++.+..++..++|.|.++..+|+|.|+|.|.|.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            56788888888999999999999999  8889999999999999889999988888889999999999999999999997


Q ss_pred             CcceeeeeEEEEecCCc
Q psy12425        371 GGVKSTKAELIIMTAPK  387 (591)
Q Consensus       371 ~g~~~~~~~l~v~~~p~  387 (591)
                        ..+.++.|.|..+|.
T Consensus        84 --~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           84 --NVTLPAKVHVISGPS   98 (100)
T ss_dssp             --CCCEEEEEEEECCSC
T ss_pred             --CeeEEEEEEEeCCCC
Confidence              556778888887764

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.56  E-value=1e-13  Score=130.03  Aligned_cols=258  Identities=16%  Similarity=0.137  Sum_probs=171.0

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCC--CceEEEEEEEcCCeeeE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE--DAGDYTVNLSNSSGSVS   78 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--d~g~Y~c~~~n~~g~~~   78 (591)
                      +|.+..|.+|.++++.|.+...   -....     +................++|.++...  ....|.|....    ..
T Consensus       204 fP~~~vv~~GS~vt~~Ci~~~~---~~~~~-----l~~~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~~----~~  271 (483)
T 3e0g_A          204 FPQDKVILVGSDITFCCVSQEK---VLSAL-----IGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTED----NI  271 (483)
T ss_dssp             ESCSEEEETTCCEEEEECCSSC---EEEEE-----SSSCCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEESS----CE
T ss_pred             eccCCEEeCCCCEEEEEEeCcc---cccee-----cCcccceeEEecCCEEEEEEeCCCCccCccceEEEecCC----cc
Confidence            4888899999999999998632   12222     22222222233455678888888763  23469998521    34


Q ss_pred             EEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCC--CcceeeEEEEEEecCCCceEEEEe----ecCcceEEEcC
Q psy12425         79 GTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDG--GLKVTHYVVERRDISMPHWICIST----TCHDTTFIVQG  152 (591)
Q Consensus        79 ~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~--~~~~~~y~~~~~~~~~~~~~~~~~----~~~~~~~~i~~  152 (591)
                      ..+.+.+..+|++|.+ +........+++++|.++...+  |...+.|.+.++..+.  ...+..    ......+.+..
T Consensus       272 ~g~~l~vg~PP~~P~n-lsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y~~~g~--~~~C~~~~~~~~~~~~C~~~~  348 (483)
T 3e0g_A          272 FGTVIFAGYPPDTPQQ-LNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGK--YVRLKRAEAPTNESYQLLFQM  348 (483)
T ss_dssp             EEEEEEEECCCCCCEE-EEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEETTTCC--EEEECCCSSCSCSCEEEEEEC
T ss_pred             cceEEECcCCCCCCCc-cEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEEEECCC--CccccCCcccCCCEEEEEEcc
Confidence            5567888888888776 4555555678999999877443  3457889998864322  222221    11345688889


Q ss_pred             CcCCcEEEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecC
Q psy12425        153 LTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG  232 (591)
Q Consensus       153 l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~  232 (591)
                      +.+...|.|+|.|.|..|..... .  .+.. .....|.+|..+.+.......+.|+|..|... +.....|.+.++..+
T Consensus       349 l~~~t~Y~f~V~A~N~lG~~~S~-~--~~~~-~~~VkP~PP~nl~v~~~~stsl~LsW~~P~~~-~~~~L~YeVrYr~~~  423 (483)
T 3e0g_A          349 LPNQEIYNFTLNAHNPLGRSQST-I--LVNI-TEKVYPHTPTSFKVKDINSTAVKLSWHLPGNF-AKINFLCEIEIKKSN  423 (483)
T ss_dssp             CTTCCCEEEEEEEECSSCEEEEE-E--EECG-GGGBCCCCCEEEEECCSSSSSCCEEEECCSCC-TTSBCCCEEEEECSS
T ss_pred             CCCCcEEEEEEEEEeCCCCcccc-e--EEEe-ccccCCCCCeeeEEEEecCCeEEEEECCCCCC-CCceEEEEEEEEECC
Confidence            99999999999999999876532 1  1111 12346777877777766778899999998543 335678999999876


Q ss_pred             CCc-cEEEEeee--cCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCc
Q psy12425        233 SDA-WQRVNVAI--CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS  279 (591)
Q Consensus       233 ~~~-~~~~~~~~--~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~  279 (591)
                      ... |.......  .....+.+.+|.++..|.++++|. ..|.+.++..+
T Consensus       424 ~~~~~~~vsv~~~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS  472 (483)
T 3e0g_A          424 SVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCS-TETFWKWSKWS  472 (483)
T ss_dssp             SCCCEEECCCBCCSSSBCCCCCCSCCSSSSCEEEEECC-CSSCCCCCCCC
T ss_pred             CCCceEEEEEeccCCceeEEEEeccCCCcEEEEEEEEe-eCCCCCcCCCC
Confidence            543 54322211  122357899999999999999999 56664444443

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.56  E-value=1.9e-13  Score=120.52  Aligned_cols=141  Identities=15%  Similarity=0.160  Sum_probs=96.6

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCC------CCCCcceEEEcCCCc----------cCCCeEEeeccccceecccc
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSL------PSSASNSVQIKDPMA----------AKAPEIIVPLRNANAIQNHN  309 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~------~s~~~~~~~~~~~~~----------~~~p~~~~~~~~~~~~~g~~  309 (591)
                      ...|.|.+++..|.|.|.|.|.|..|...      .......+.+.....          ..++.+...+....+.+|+.
T Consensus        77 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~  156 (257)
T 1f3r_B           77 QVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDR  156 (257)
T ss_dssp             EEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCC
T ss_pred             EEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCC
Confidence            35899999999999999999999865210      011233455543210          01233444455667889999


Q ss_pred             EEEEEEEcCCCCCeeEEec--CCccCC------------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425        310 AQFQCTITGCPKPTISWLK--GSREIT------------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS  375 (591)
Q Consensus       310 ~~l~c~~~~~p~~~v~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~  375 (591)
                      +.|.|.+.+.+.+.+.|++  ++..+.            ...++.+...+...+|.|.++..+|+|.|+|.|.|......
T Consensus       157 v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g  236 (257)
T 1f3r_B          157 VTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFG  236 (257)
T ss_dssp             EEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEEC
T ss_pred             EEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeEC
Confidence            9999999999989999999  444331            13455555556677999999999999999999999752223


Q ss_pred             eeeEEEEecCC
Q psy12425        376 TKAELIIMTAP  386 (591)
Q Consensus       376 ~~~~l~v~~~p  386 (591)
                      ....|.|...+
T Consensus       237 ~gt~l~V~~~~  247 (257)
T 1f3r_B          237 AGTKLELKAAE  247 (257)
T ss_dssp             CCCEECCSSSC
T ss_pred             CCEEEEEeCCC
Confidence            34455554433

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.56  E-value=3.4e-13  Score=127.64  Aligned_cols=135  Identities=17%  Similarity=0.100  Sum_probs=91.0

Q ss_pred             eeEEEEeccCCCcceeEEEEEEcC--CCcc--ceEEEEEec-C-CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeE
Q psy12425        443 HAILTIRDASNVDTAPYRVVAEND--LGMD--SAIVKIQIS-D-RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNY  516 (591)
Q Consensus       443 ~~~l~i~~~~~~~~g~y~c~a~n~--~g~~--~~~~~~~v~-~-~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y  516 (591)
                      ...+.|.+|.+...|.+++.|.|.  .|.+  +....+... + ++.+|.++.+...+ .++.|+|++|.     ...+|
T Consensus       162 ~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~-~~~~l~W~pp~-----~~~~Y  235 (414)
T 3se4_A          162 YSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDYTY-----ANMTF  235 (414)
T ss_dssp             CSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEET-TEEEEEEECSS-----SSCEE
T ss_pred             CcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEec-CCeEEEECCCC-----CCeEE
Confidence            456889999999999999999994  4443  333333332 2 33567777777654 67999999863     23499


Q ss_pred             EEEeeeC--------CCCceEEe---ceeeeeEEEEc-CcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccCCCC
Q psy12425        517 IVEKREH--------PMSSWIRV---GNTRFTTMAIT-GLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSGMEA  584 (591)
Q Consensus       517 ~v~~~~~--------~~~~~~~~---~~~~~~~~~i~-~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~  584 (591)
                      .|+|+..        ....|..+   .+.....+.+. +|.+++.|.|+|+|.|..|.|++|.... +.+....+++||.
T Consensus       236 ~v~y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~-~~t~~~~~~~pP~  314 (414)
T 3se4_A          236 QVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIK-FDTEIQAFLLPPV  314 (414)
T ss_dssp             EEEEEESGGGSCCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEE-EETTCC-------
T ss_pred             EEEEEehhccccccccccCceECCCccCCCCCEEcCCcccccCccEEEEEEEecCCCccccccccc-ccchhccccCCCe
Confidence            9999863        24567654   23444566675 6999999999999999999999987654 4566556666654

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.6e-14  Score=110.18  Aligned_cols=101  Identities=21%  Similarity=0.217  Sum_probs=82.6

Q ss_pred             ecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEE
Q psy12425        478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVY  555 (591)
Q Consensus       478 v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~  555 (591)
                      ...+|.+|.++.+...+.+++.|+|++|.. ++..+.+|.|+|+......|...  .......+.|.+|.+++.|.|+|+
T Consensus        14 ~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   92 (119)
T 2ed7_A           14 SSVLPSAPRDVVPVLVSSRFVRLSWRPPAE-AKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVV   92 (119)
T ss_dssp             SSSSCCCCSCCEEEEECSSCEEEECCCCSC-CSSCEEEEEEEEEESSCCCCEEEECCCTTCCEEEECSCCSSSEEEECCE
T ss_pred             CCCCCcCCcceEEEecCCCEEEEEEeCCCC-CCCcEEEEEEEEEeCCCCcceeeEeecCCceEEEeCCCCCCCEEEEEEE
Confidence            346789999999999999999999998864 45589999999998776666544  234567999999999999999999


Q ss_pred             EEcCCcCCCCCCCcceEEeccccc
Q psy12425        556 AENVYGRSDPSTTSDLITTYGELL  579 (591)
Q Consensus       556 A~n~~G~~~~s~~~~~~~t~~~~p  579 (591)
                      |.|..|.|.+|....+.|.+..+|
T Consensus        93 A~n~~G~g~~S~~~~~~T~~~~pP  116 (119)
T 2ed7_A           93 AYNEWGPGESSQPIKVATQPESGP  116 (119)
T ss_dssp             EEESSCBCSCCCCEEEECCCCSCC
T ss_pred             EEcCCccCCCcCCEEEEeCCCCCC
Confidence            999999999999876655444443

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3.4e-14  Score=107.95  Aligned_cols=99  Identities=24%  Similarity=0.554  Sum_probs=83.7

Q ss_pred             cCCcccCCCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEE
Q psy12425        384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA  463 (591)
Q Consensus       384 ~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a  463 (591)
                      .+|.+..+........+..|+.+.|.|.+.|.|.|.+.|++++..+. ..++.+...+....|.|.++...|+|.|+|.|
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   98 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSV   98 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence            45555544334456778899999999999999999999999999886 45666666677888999999999999999999


Q ss_pred             EcCCCccceEEEEEecCCCC
Q psy12425        464 ENDLGMDSAIVKIQISDRPD  483 (591)
Q Consensus       464 ~n~~g~~~~~~~~~v~~~p~  483 (591)
                      .|..|..+..+.|.|.++|+
T Consensus        99 ~N~~G~~~~~~~l~V~~~P~  118 (118)
T 2e7c_A           99 QIENMKDTATIRIRVVEKAG  118 (118)
T ss_dssp             ECSSCEECCEEEEEEECCCC
T ss_pred             EeCCCeEEEEEEEEEEcCCC
Confidence            99999999999999988763

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.56  E-value=4.5e-14  Score=104.45  Aligned_cols=95  Identities=22%  Similarity=0.308  Sum_probs=86.5

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+...+...+|.|.++..+|+|.|+|.|.|.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   86 (103)
T 3qp3_A            7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNY   86 (103)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeC
Confidence            46788888888889999999999999999999999999999998888888888888889999999999999999999999


Q ss_pred             CcceeeeeEEEEecC
Q psy12425        371 GGVKSTKAELIIMTA  385 (591)
Q Consensus       371 ~g~~~~~~~l~v~~~  385 (591)
                      .|.....+.|.|...
T Consensus        87 ~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           87 KGEASDYATLDVTGG  101 (103)
T ss_dssp             TEEEEEEEEEEEECC
T ss_pred             CCcEEEEEEEEEECC
Confidence            999988888888653

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=2.3e-14  Score=106.84  Aligned_cols=98  Identities=21%  Similarity=0.186  Sum_probs=78.4

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCC---CCceEEeceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP---MSSWIRVGNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      .+|.+|.++.+..++.+++.|+|++|...+ +.|.+|+|+|+...   ...|... ......+.|.+|.|++.|.|+|+|
T Consensus         6 ~~P~~p~~l~~~~~~~~sv~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A   83 (109)
T 2e7h_A            6 SGPPAVSDIRVTRSSPSSLSLAWAVPRAPS-GAVLDYEVKYHEKGAEGPSSVRFL-KTSENRAELRGLKRGASYLVQVRA   83 (109)
T ss_dssp             CSSCCCCCCEEEEEETTEEEEECCCCCCSS-SCCCEEEEEEEETTCCSTTTSEEE-EESSSEEEEESCCTTSCEEEEEEE
T ss_pred             CCCCCCCccEEEecCCCEEEEEeCCCCCCC-CcEeEEEEEEEECCCCCCceeEEE-ccCCCEEEECCCCCCCeEEEEEEE
Confidence            578889999999999999999999987444 47999999998765   2333333 344569999999999999999999


Q ss_pred             EcCCcCCCCCCCcceEEeccccc
Q psy12425        557 ENVYGRSDPSTTSDLITTYGELL  579 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~~~t~~~~p  579 (591)
                      .|.+|.|++|..+.+.|.+...|
T Consensus        84 ~n~~G~g~~S~~~~~~T~~~~~p  106 (109)
T 2e7h_A           84 RSEAGYGPFGQEHHSQTQLDSGP  106 (109)
T ss_dssp             ECSSCBCCCCSCEECCCCCCSSC
T ss_pred             EeCCccCCCCCCEEEEcCCCCCC
Confidence            99999999999876545444333

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.56  E-value=7.2e-14  Score=117.82  Aligned_cols=162  Identities=17%  Similarity=0.189  Sum_probs=101.6

Q ss_pred             EeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc-cE-EEEeeecCCceeeecCcccCCcEEEEEEEEcCC-CCCCC
Q psy12425        199 TQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA-WQ-RVNVAICAPSQINIPNLIEGRQYEFRVYAQNEA-GLSLP  275 (591)
Q Consensus       199 ~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~-g~~~~  275 (591)
                      ....|+.++|.|.....+.  .+.+|     ..+... .. ...........|.|.++...|.|.|+|.|.|.. |....
T Consensus        15 ~v~~G~~v~L~C~~~~~~~--~~~W~-----k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~   87 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ--EYRLY-----REKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSES   87 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC--CEEEE-----ESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCC
T ss_pred             cccCCCcEEEEEEecCCCc--EEEEE-----ECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccC
Confidence            4457889999999753322  22222     112111 00 000012345789999999999999999999977 53322


Q ss_pred             CCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCc-eEEEE-eCCeEEEEEc
Q psy12425        276 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR-HHIFA-EGDTYTLIIN  353 (591)
Q Consensus       276 s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~-~~~~~~l~i~  353 (591)
                      + ....+.+..  ...+|.+...+ ...+.+|+.+.|.|.+.+. .+.+.|++++..+..... +.... .+....|.|.
T Consensus        88 s-~~~~l~V~~--~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~  162 (198)
T 1ugn_A           88 S-DPLELVVTG--AYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVG  162 (198)
T ss_dssp             C-CCEEEEEEC--SSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEEC
T ss_pred             C-ccEEEEEcc--cccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEec
Confidence            2 334455542  12346655443 3568899999999999998 789999999887643321 11122 2235689999


Q ss_pred             ceecccceEEEEEEEeCCc
Q psy12425        354 SVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       354 ~~~~~d~g~y~c~a~n~~g  372 (591)
                      ++..+|+|.|+|.|.|..+
T Consensus       163 ~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          163 PVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             CCCTTSCEEEEEEEECTTS
T ss_pred             ccCcccCeEEEEEEEeCCC
Confidence            9999999999999999866

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.55  E-value=2.4e-14  Score=125.86  Aligned_cols=170  Identities=14%  Similarity=0.202  Sum_probs=109.5

Q ss_pred             ccccceeccccEEEEEEEcCCCCCeeEEecCCc--cC------CC---------CC-ceEEEEeCCeEEEEEcceecccc
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--EI------TP---------SA-RHHIFAEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~------~~---------~~-~~~~~~~~~~~~l~i~~~~~~d~  360 (591)
                      +..+.+.+|+.+.|.|.+.+.+.+.+.|++...  ..      ..         .. ++.+..++... |.|.+++.+|+
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~Ds   86 (253)
T 3to4_D            8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQG   86 (253)
T ss_dssp             CSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSSC
T ss_pred             CCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhhC
Confidence            345668899999999999988899999987321  10      00         01 33343333333 99999999999


Q ss_pred             eEEEEEEEeCCc------ceeeeeEEEEecCCcccCCCCcc----cceeecCCCeEEEEEeeec-cCCC-eEEEeeCCeE
Q psy12425        361 DEYVCRAVNKGG------VKSTKAELIIMTAPKFNVPPRFR----DTAYFDKGENVVVKIPFTG-YPKP-KITWYRDNEV  428 (591)
Q Consensus       361 g~y~c~a~n~~g------~~~~~~~l~v~~~p~~~~~~~~~----~~~~~~~g~~~~l~c~~~~-~p~~-~v~W~~~~~~  428 (591)
                      |.|.|.+.+..+      .......+.|........+|...    ....+..|..+.|.|.+.| .|.+ .+.|+++|..
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~  166 (253)
T 3to4_D           87 RTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  166 (253)
T ss_dssp             EEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             eEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEE
Confidence            999999987654      12334566676432222222211    1112234689999999998 5666 8999999998


Q ss_pred             eeeccceEEEe-------cCC----eeEEEEeccCCCc-ceeEEEEEEcCCCc
Q psy12425        429 IESGGHFHVET-------SER----HAILTIRDASNVD-TAPYRVVAENDLGM  469 (591)
Q Consensus       429 ~~~~~~~~~~~-------~~~----~~~l~i~~~~~~~-~g~y~c~a~n~~g~  469 (591)
                      +..........       .+.    .+.|.|.....+| .+.|+|.|.|..-.
T Consensus       167 l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~  219 (253)
T 3to4_D          167 VHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (253)
T ss_dssp             ECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             CCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence            85432211100       111    2467777777666 77999999997543

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.55  E-value=1.1e-14  Score=109.04  Aligned_cols=89  Identities=20%  Similarity=0.260  Sum_probs=66.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|++..+....++.+.  ....+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus        17 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   94 (108)
T 3kvq_A           17 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEA   94 (108)
T ss_dssp             CCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEE--TTTTEEEECSCCGGGCEEEEEEEC----CEEEEE
T ss_pred             CCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEe--CCCcEEEEeecCcccCEEEEEEEEeCCCceEEEE
Confidence            56788999999999999999999999999999988776665443  3345899999999999999999999999999999


Q ss_pred             EEEEecCCCCC
Q psy12425         82 TINITGLPGPP   92 (591)
Q Consensus        82 ~l~v~~~p~~p   92 (591)
                      .|.|...|..+
T Consensus        95 ~l~V~~~~~~~  105 (108)
T 3kvq_A           95 FFIIEGAQEKT  105 (108)
T ss_dssp             EEEEEC-----
T ss_pred             EEEEeCCCccc
Confidence            99999877654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.55  E-value=1.9e-14  Score=119.63  Aligned_cols=143  Identities=10%  Similarity=0.076  Sum_probs=99.4

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcc-cCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKE-IRKEDAGDYTVNLSNSSGSVSGTFTIN   84 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~Y~c~~~n~~g~~~~~~~l~   84 (591)
                      .+.+|+++.|.|.+.+ +. .|.|+|||..+....         ..+|.|.+ ++.+|+|.|+|.|.|..|.....+.+.
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~---------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSCC---------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC---------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            4578999999999987 43 499999999987641         12799999 999999999999999998866666666


Q ss_pred             EecCCCCCCC----------------C------cce---EEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEE
Q psy12425         85 ITGLPGPPIG----------------P------LDV---SEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICI  139 (591)
Q Consensus        85 v~~~p~~p~~----------------~------~~~---~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~  139 (591)
                      |...+.+...                +      ...   ....+..+.|.|..|.    ..+.||.-. ....       
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~p~----p~i~W~k~g-~~i~-------  146 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTD----KTIKWLKDG-SIIS-------  146 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSSSC----SCEEEEETT-EECC-------
T ss_pred             EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeCCC----CeEEEEECC-EECc-------
Confidence            5543322110                0      001   1126788999998743    233333211 1111       


Q ss_pred             EeecCcceEEEcCCcCCcEEEEEEEEEccCCC
Q psy12425        140 STTCHDTTFIVQGLTEGQEYLFHVMAVNENGM  171 (591)
Q Consensus       140 ~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~  171 (591)
                      ........+.|.++...+.+.|+|.|.|..|.
T Consensus       147 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          147 PLNATKNTWNLGNNAKDPRGTYQCQGAKETSN  178 (186)
T ss_dssp             CSSCCSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred             ccCCCcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence            01125677899999999999999999998774

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=9.5e-15  Score=106.82  Aligned_cols=86  Identities=17%  Similarity=0.263  Sum_probs=73.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.|.| +.+.|+|++..+....++.+.    ...|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   84 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSDTTYF   84 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEEEEEE
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceEEEEE
Confidence            5678899999999999999877 799999999988776665543    23899999999999999999999999988888


Q ss_pred             EEEEecCCCCC
Q psy12425         82 TINITGLPGPP   92 (591)
Q Consensus        82 ~l~v~~~p~~p   92 (591)
                      .|.|...|..+
T Consensus        85 ~l~V~~~~~s~   95 (99)
T 2cr3_A           85 SVNVSDALPSG   95 (99)
T ss_dssp             EECBCSCCSCC
T ss_pred             EEEEecCCCCc
Confidence            88888766543

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=106.05  Aligned_cols=85  Identities=24%  Similarity=0.267  Sum_probs=72.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|++..+... .++.+  ..+ .+|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        15 p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~--~~~-~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   91 (100)
T 2edj_A           15 PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI--QEQ-GTLQIKNLRISDTGTYTCVATSSSGETSWS   91 (100)
T ss_dssp             CCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE--CTT-CCEEEESCCTTTCCEEEEEEECSSCCCBCC
T ss_pred             cCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE--cCC-CEEEEccCCcccCEEEEEEEEcCCCCEEEE
Confidence            66788999999999999999999999999999988743 33332  222 379999999999999999999999999888


Q ss_pred             EEEEEecCC
Q psy12425         81 FTINITGLP   89 (591)
Q Consensus        81 ~~l~v~~~p   89 (591)
                      +.|.|.+.|
T Consensus        92 ~~l~V~~~~  100 (100)
T 2edj_A           92 AVLDVTESG  100 (100)
T ss_dssp             EEEEEESCC
T ss_pred             EEEEEecCC
Confidence            999998754

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.5e-14  Score=107.64  Aligned_cols=93  Identities=26%  Similarity=0.223  Sum_probs=74.1

Q ss_pred             CCCCC-CCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        482 PDPPQ-FPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       482 p~~p~-~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      |.+|. .+.+..++.+++.|+|++|..++ ..+.+|+|+++......|..+.....+.++|.+|.+++.|.|||+|.|..
T Consensus        10 P~~P~~~~~~~~~~~~sv~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~   88 (110)
T 2db8_A           10 PATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKT   88 (110)
T ss_dssp             CCCCBCCCCCCSCSSSEEEECCBCCTTCC-SCCSEEEEEECCSSSSCCEEEEEESCSCEEEECCCSSSCCEEEEEEECSS
T ss_pred             CCCccccceeeccCCCEEEEEECCCCCCC-CCccEEEEEEEeCCCCceEEEEeCCcCEEEECCCCCCCEEEEEEEEEeCC
Confidence            44443 33344467899999999887544 68999999998877678887766667899999999999999999999999


Q ss_pred             cCCCCCCCcceEEec
Q psy12425        561 GRSDPSTTSDLITTY  575 (591)
Q Consensus       561 G~~~~s~~~~~~~t~  575 (591)
                      |.|++|..+.+.|.+
T Consensus        89 G~s~~S~~~~~~T~~  103 (110)
T 2db8_A           89 GVSPYSKTLVLQTSE  103 (110)
T ss_dssp             CBCCCCSCEECCCCC
T ss_pred             cCCCCCCCEEEEcCC
Confidence            999999886553433

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.55  E-value=1.4e-14  Score=105.10  Aligned_cols=79  Identities=20%  Similarity=0.312  Sum_probs=69.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.|.| +.+.|+|+|..+..+.++.+.    ...|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   90 (95)
T 2ckn_A           16 VESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----GEEVEVRDSIPADSGLYACVTSSPSGSDTTYF   90 (95)
T ss_dssp             BCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----SSEEEESSCCGGGSEEEEEEEEETTEEEEEEE
T ss_pred             cceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----CCEEEECCCChHHCEEEEEEeccCCCcEEEEE
Confidence            5678899999999999999987 799999999998877665543    33899999999999999999999999988888


Q ss_pred             EEEE
Q psy12425         82 TINI   85 (591)
Q Consensus        82 ~l~v   85 (591)
                      .|.|
T Consensus        91 ~l~V   94 (95)
T 2ckn_A           91 SVNV   94 (95)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8876

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.54  E-value=5e-13  Score=117.24  Aligned_cols=137  Identities=10%  Similarity=0.132  Sum_probs=96.2

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCc----------cCCCeEEeeccccceeccccEEEEEE
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMA----------AKAPEIIVPLRNANAIQNHNAQFQCT  315 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~----------~~~p~~~~~~~~~~~~~g~~~~l~c~  315 (591)
                      ...|.|.+++..|.|.|+|.|.|..+.... .....+.+.....          ..++.+...+....+.+|+.+.|.|.
T Consensus        80 ~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  158 (247)
T 2ghw_B           80 TLYLQMNSLRAEDTAVYYCARDRSYYLDYW-GQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCR  158 (247)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEEE-CCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEE
T ss_pred             EEEEEECcCCHHHCEEEEEeeeccCCcccc-CCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEE
Confidence            357999999999999999999987322111 1223555553211          23455666666777899999999999


Q ss_pred             EcCCCCCeeEEec--CCccC------------CCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeeeEE
Q psy12425        316 ITGCPKPTISWLK--GSREI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL  380 (591)
Q Consensus       316 ~~~~p~~~v~W~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~l  380 (591)
                      +.+.|.+.+.|++  ++..+            ....++.+...+...+|.|.++..+|+|.|+|.|.|..+.. .....|
T Consensus       159 ~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l  238 (247)
T 2ghw_B          159 ASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKV  238 (247)
T ss_dssp             ESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEE
T ss_pred             eCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEE
Confidence            9999999999998  44433            11345555555567789999999999999999999864433 233455


Q ss_pred             EEe
Q psy12425        381 IIM  383 (591)
Q Consensus       381 ~v~  383 (591)
                      .|.
T Consensus       239 ~V~  241 (247)
T 2ghw_B          239 EVK  241 (247)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            554

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=106.82  Aligned_cols=87  Identities=18%  Similarity=0.281  Sum_probs=70.0

Q ss_pred             CceeeeecCCeEEEEEEeccC---CCceEEEEECCE-Eeec--CCceeEEEe-C-----CeEEEEEcccCCCCceEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD---QPMEVSLTKNGR-VVQS--DDRFKFTVL-D-----DYIIIFIKEIRKEDAGDYTVN   69 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~---p~~~v~W~~~~~-~~~~--~~~~~~~~~-~-----~~~~l~i~~~~~~d~g~Y~c~   69 (591)
                      |.++.|.+|++++|.|.+.|.   |.|.|.|||+.. .+..  ..++.+... .     ...+|.|.++++.|+|.|+|.
T Consensus        19 P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Ce   98 (118)
T 2edn_A           19 PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLE   98 (118)
T ss_dssp             CCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEE
T ss_pred             CCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEE
Confidence            788999999999999999875   789999999752 2222  234444321 1     147999999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEecC
Q psy12425         70 LSNSSGSVSGTFTINITGL   88 (591)
Q Consensus        70 ~~n~~g~~~~~~~l~v~~~   88 (591)
                      |.|..|..+..+.|.|..+
T Consensus        99 vsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           99 VKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             EECSSCEEEEEECCEEECC
T ss_pred             EEEcCCcEEEEEEEEEEcC
Confidence            9999999999999999763

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.54  E-value=3.6e-14  Score=105.79  Aligned_cols=95  Identities=22%  Similarity=0.267  Sum_probs=77.8

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCce-EEeceeeeeEEEEcCcccCceEEEEEEEEc
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW-IRVGNTRFTTMAITGLSPGHQYEFRVYAEN  558 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n  558 (591)
                      ..|.+|.++.+...+.+++.|+|++|...+ +.+.+|+|+|+......| ..........+.|.+|.|++.|.|+|+|.|
T Consensus         6 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n   84 (108)
T 2djs_A            6 SGPSTVPIMHQVSATMRSITLSWPQPEQPN-GIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRART   84 (108)
T ss_dssp             CCCCCCSCCEEEEECSSEEEEECCCCSCCS-SCEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEEEEEEEE
T ss_pred             CCCCCCcceEEEecCCCEEEEEECCCCCCC-CeEEEEEEEEEECCCCCcceeEEecCccEEEEcCCCCCCEEEEEEEEEe
Confidence            578899999999999999999999986444 479999999987765444 223345668999999999999999999999


Q ss_pred             CCcCCCCCCCcceEEec
Q psy12425        559 VYGRSDPSTTSDLITTY  575 (591)
Q Consensus       559 ~~G~~~~s~~~~~~~t~  575 (591)
                      ..|.|++|....+.|.+
T Consensus        85 ~~G~g~~S~~~~~~T~~  101 (108)
T 2djs_A           85 VAGYGKFSGKMCFQTLT  101 (108)
T ss_dssp             SSCEEEECCCEEEECCC
T ss_pred             CCEECCCCCCEEEEeCC
Confidence            99999999887654433

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.54  E-value=1.4e-13  Score=114.72  Aligned_cols=154  Identities=12%  Similarity=0.128  Sum_probs=104.4

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee--EEEEEE
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV--SGTFTI   83 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~--~~~~~l   83 (591)
                      .|.+|++|+|.|.+.+ +.+.+.|+|+|..+...... .........|.|.+++++|+|.|+|.+.|..+..  +..+.|
T Consensus        14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l   91 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL   91 (188)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred             cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc-cCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEE
Confidence            6899999999999975 45789999999877532110 0112345689999999999999999999876543  455788


Q ss_pred             EEecCCCCCC---CCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEE
Q psy12425         84 NITGLPGPPI---GPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYL  160 (591)
Q Consensus        84 ~v~~~p~~p~---~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  160 (591)
                      .|...+..|.   .+ ......+..++|.|....   . . ..|.+.+....  .............|.|.++...+.+.
T Consensus        92 ~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~---~-~-~~~~w~k~g~~--~~~~~~~~~~~~~L~I~~v~~~d~G~  163 (188)
T 1oll_A           92 VVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT---A-T-SMFLLLKEGRS--SHVQRGYGKVQAEFPLGPVTTAHRGT  163 (188)
T ss_dssp             EEESCSCCCEEEEES-CSEEETTCEEEEEEECSS---S-C-SEEEEEEESSS--CEEEEEECSSEEEEEEEECCGGGCEE
T ss_pred             EecccCCCCeEEECC-CCccccCCEEEEEEEcCC---C-C-CEEEEEECCcc--ccccccCCCceeEEEECCCCcCCCcE
Confidence            8876433332   11 223457889999998543   1 1 23444333211  11111223456789999999999999


Q ss_pred             EEEEEEccC
Q psy12425        161 FHVMAVNEN  169 (591)
Q Consensus       161 ~~~~a~n~~  169 (591)
                      |+|.|.|..
T Consensus       164 Y~C~a~n~~  172 (188)
T 1oll_A          164 YRCFGSYNN  172 (188)
T ss_dssp             EEEECEEET
T ss_pred             EEEEEEcCC
Confidence            999999864

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.54  E-value=8.7e-14  Score=122.58  Aligned_cols=125  Identities=10%  Similarity=0.152  Sum_probs=88.8

Q ss_pred             ceeeecCcccCCcEEEEEEEEcCCCCCCCC--CCcceEEEcCCCccCCCeEE-eeccccceeccccEEEEEEEcCCCCCe
Q psy12425        247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPS--SASNSVQIKDPMAAKAPEII-VPLRNANAIQNHNAQFQCTITGCPKPT  323 (591)
Q Consensus       247 ~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s--~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~c~~~~~p~~~  323 (591)
                      ..|.|.+++..|.|.|+|.+.|..+.....  .....+.+..+  +.+|.+. ..+....+.+|+.+.|.|.+.+.|.|.
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~--~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~  167 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH--TPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN  167 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT--SCCSCCEECCCSEEECCTTCCEEECCCEESCTTCE
T ss_pred             ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc--CCCCeEEEecCceEEecCCCcEEEEEEecCCCCCe
Confidence            589999999999999999999976643221  12344555432  2233333 333456677899999999999999999


Q ss_pred             eEEecCCccCCCCCce----------------------EEEEeCCeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        324 ISWLKGSREITPSARH----------------------HIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       324 v~W~~~~~~~~~~~~~----------------------~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      +.|++++..+......                      ..... ....|.|.++..+|+|.|+|.|.|..|..
T Consensus       168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          168 VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS-GARNLVIRAAKITDAGRVWCELATGQGEL  239 (250)
T ss_dssp             EEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE-TTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred             eEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC-CccEEEEecCCcccCEEEEEEecCCcccc
Confidence            9999998776542211                      11111 11379999999999999999999966644

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.54  E-value=2.6e-14  Score=123.06  Aligned_cols=195  Identities=11%  Similarity=0.144  Sum_probs=103.8

Q ss_pred             EEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeE-Eeeccccc-eeccccEEEEEEEcCCC----CCeeEEecCCccC
Q psy12425        260 YEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEI-IVPLRNAN-AIQNHNAQFQCTITGCP----KPTISWLKGSREI  333 (591)
Q Consensus       260 ~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~-~~~~~~~~-~~~g~~~~l~c~~~~~p----~~~v~W~~~~~~~  333 (591)
                      |.|.|...+..+..           .++....+|.+ +..+.... +..|+.+.|.|.+.|..    ...|.|+++|..+
T Consensus         1 ~~~~~~~~~~~~~c-----------~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l   69 (240)
T 4acp_A            1 GTKSCDKTHTCPPC-----------PAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV   69 (240)
T ss_dssp             ---------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEE
T ss_pred             CceeeeeeecCCCC-----------CccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCccc
Confidence            56778777765531           11111123444 44444444 55699999999999864    3479999999887


Q ss_pred             CCCCceEE-E-EeCC---eEEEEEcceecccceEEEEEEEeCCcceeeeeEEE----EecCCcccCCCCcccceeecCCC
Q psy12425        334 TPSARHHI-F-AEGD---TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI----IMTAPKFNVPPRFRDTAYFDKGE  404 (591)
Q Consensus       334 ~~~~~~~~-~-~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~----v~~~p~~~~~~~~~~~~~~~~g~  404 (591)
                      ........ . .++.   ...|.|.....+|.|.|+|.|.|..+.......+.    +..+|.+...+..   .....|.
T Consensus        70 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~---~~~~~g~  146 (240)
T 4acp_A           70 HNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS---RDELTKN  146 (240)
T ss_dssp             CCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCC---GGGGGSS
T ss_pred             CCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCC---hHHhcCC
Confidence            54321111 1 1121   12577777777789999999999877443322222    2334444322211   1112388


Q ss_pred             eEEEEEeeec-cCCC-eEEEeeCCeEeeeccceEEEecCC-----eeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        405 NVVVKIPFTG-YPKP-KITWYRDNEVIESGGHFHVETSER-----HAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       405 ~~~l~c~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      .+.|.|.+.+ .|.+ .+.|+++|..+............+     ...|.+......+.+.|+|.|.+..-
T Consensus       147 ~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          147 QVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            9999999998 4554 899999998864321111111111     24556665555678999999999843

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.54  E-value=9.2e-14  Score=103.45  Aligned_cols=85  Identities=15%  Similarity=0.151  Sum_probs=68.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCC---ceEEEEECCEEeec---CCceeEEEe------CCeEEEEEcccCCCCceEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQP---MEVSLTKNGRVVQS---DDRFKFTVL------DDYIIIFIKEIRKEDAGDYTVN   69 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~---~~v~W~~~~~~~~~---~~~~~~~~~------~~~~~l~i~~~~~~d~g~Y~c~   69 (591)
                      |..+.+.+|++++|.|.+.|.|.   +.|.|+|++.....   ..++.+...      ....+|.|.+++.+|+|.|+|.
T Consensus        11 p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   90 (108)
T 3cx2_A           11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCE   90 (108)
T ss_dssp             CCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEE
T ss_pred             CCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEE
Confidence            77899999999999999999988   99999998732221   234444321      1246899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEe
Q psy12425         70 LSNSSGSVSGTFTINIT   86 (591)
Q Consensus        70 ~~n~~g~~~~~~~l~v~   86 (591)
                      |.|..|..+..+.|.|.
T Consensus        91 a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           91 VSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             EECSSCEEEEEEEEEEE
T ss_pred             EecCCCceEEEEEEEEe
Confidence            99999999999999885

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.54  E-value=5.9e-14  Score=101.73  Aligned_cols=80  Identities=15%  Similarity=0.327  Sum_probs=70.7

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+ +.|.+.+.|+|+|..+..+.++.+...+...+|.|.+++.+|+|.|+|.|    |.....+
T Consensus        15 ~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~   89 (95)
T 2k1m_A           15 PRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKF   89 (95)
T ss_dssp             CCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEEEEE
T ss_pred             CCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCceEEE
Confidence            567899999999999999 78899999999999998888888888888889999999999999999999    4455567


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .|.|.
T Consensus        90 ~l~V~   94 (95)
T 2k1m_A           90 DLKVI   94 (95)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77664

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.54  E-value=4e-14  Score=105.51  Aligned_cols=99  Identities=22%  Similarity=0.243  Sum_probs=80.8

Q ss_pred             CCCCCCCCCeeee--ecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        480 DRPDPPQFPTVED--IGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       480 ~~p~~p~~~~~~~--~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      ..|.+|.++.+..  .+.+++.|+|++|. +.+..+.+|+|+|+......|.... ...+.+.|.+|.+++.|.|+|+|.
T Consensus         6 ~~P~~P~~l~~~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~l~~L~p~t~Y~~~V~A~   83 (108)
T 2dm4_A            6 SGPDAPRNLQLSLPREAEGVIVGHWAPPI-HTHGLIREYIVEYSRSGSKMWASQR-AASNFTEIKNLLVNTLYTVRVAAV   83 (108)
T ss_dssp             CCTTSCEEEEEECCTTCSSCEEEEEECCS-CCSSCEEEEEEEEEETTCSCCEEEE-ESSSEEEECSCCSSCEEEEEEEEE
T ss_pred             CCCcCCcCeEEEEeccCCCEEEEEEcCCC-CCCCcEEEEEEEEEECCCCCeEEec-CCccEEEeCCCCCCCEEEEEEEEE
Confidence            5688898887765  57889999999987 4555899999999988877787653 345699999999999999999999


Q ss_pred             cCCcCCCCCCCcceEEeccccccC
Q psy12425        558 NVYGRSDPSTTSDLITTYGELLSG  581 (591)
Q Consensus       558 n~~G~~~~s~~~~~~~t~~~~p~~  581 (591)
                      |..|.|++|....+ +|...+|+.
T Consensus        84 n~~G~g~~S~~~~~-~T~~~~P~~  106 (108)
T 2dm4_A           84 TSRGIGNWSDSKSI-TTIKGSGPS  106 (108)
T ss_dssp             ESSCEEEECCCEEE-ECCSCSSCC
T ss_pred             CCCceeCCCCCEEE-ECCCCCCCC
Confidence            99999999987654 565555543

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.54  E-value=6.9e-14  Score=102.56  Aligned_cols=80  Identities=21%  Similarity=0.360  Sum_probs=72.4

Q ss_pred             eeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425          5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN   84 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~   84 (591)
                      +.+.+|+++.|.|.+. .|.+.+.|+|+|..+..+.++++...+....|.|.+++.+|+|.|+|.|    |....++.|.
T Consensus        18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~   92 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELF   92 (100)
T ss_dssp             EEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEE
T ss_pred             cEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEE
Confidence            6789999999999998 7999999999999998888888888888889999999999999999999    5667778899


Q ss_pred             EecCC
Q psy12425         85 ITGLP   89 (591)
Q Consensus        85 v~~~p   89 (591)
                      |..+|
T Consensus        93 V~~~P   97 (100)
T 2yuv_A           93 VRSGP   97 (100)
T ss_dssp             ECCSC
T ss_pred             EecCC
Confidence            88765

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.53  E-value=2.4e-13  Score=118.11  Aligned_cols=174  Identities=12%  Similarity=0.192  Sum_probs=109.9

Q ss_pred             cccceeccccEEEEEEEcCCC----CCeeEEecCCccC--------C----------------CCCceEEEEe--CCeEE
Q psy12425        300 RNANAIQNHNAQFQCTITGCP----KPTISWLKGSREI--------T----------------PSARHHIFAE--GDTYT  349 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p----~~~v~W~~~~~~~--------~----------------~~~~~~~~~~--~~~~~  349 (591)
                      ..+.+.+|+.+.|.|.+.+.+    ...+.|++.....        .                ...++.+..+  ....+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   87 (239)
T 3tv3_H            8 GPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVF   87 (239)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEE
T ss_pred             CCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEE
Confidence            456688999999999998765    3489998732110        0                1134444433  34678


Q ss_pred             EEEcceecccceEEEEEEEeCCc-------------ceeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEee
Q psy12425        350 LIINSVYGVDADEYVCRAVNKGG-------------VKSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPF  412 (591)
Q Consensus       350 l~i~~~~~~d~g~y~c~a~n~~g-------------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~  412 (591)
                      |.|.+++.+|+|.|.|.+.+..+             .......+.|..    +|.+...+   ....+..|+.+.|.|.+
T Consensus        88 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~---~~~~~~~g~~v~l~C~~  164 (239)
T 3tv3_H           88 LKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLA---PSSKSTSGGTAALGCLV  164 (239)
T ss_dssp             EEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEEC---CCCCC--TTEEEEEEEE
T ss_pred             EEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEEC---CChhhccCCcEEEEEEE
Confidence            99999999999999999987632             112334566642    22222111   11223569999999999


Q ss_pred             ec-cCCC-eEEEeeCCeEeeeccceEEEecC----CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        413 TG-YPKP-KITWYRDNEVIESGGHFHVETSE----RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       413 ~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      .+ .|.+ .+.|++++..+...........+    ..+.|+|.....++ |.|+|.|.|..+.......+.
T Consensus       165 ~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  234 (239)
T 3tv3_H          165 KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  234 (239)
T ss_dssp             EEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             eeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEec
Confidence            88 4544 58899998643211111111111    13568888888888 999999999987655554444

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.53  E-value=1.8e-14  Score=110.01  Aligned_cols=99  Identities=21%  Similarity=0.255  Sum_probs=80.5

Q ss_pred             ecCCCCCCCCCeeeeecCCeeEEEeeccc-cCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEE
Q psy12425        478 ISDRPDPPQFPTVEDIGHDSLALVWRAPI-WDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRV  554 (591)
Q Consensus       478 v~~~p~~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v  554 (591)
                      ...+|.+|.++.+...+.+++.|+|++|. ..++ .+.+|+|+|+......|...  .......+.|.+|.|++.|.|+|
T Consensus        14 ~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   92 (120)
T 1x5f_A           14 TGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHG-DNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRV   92 (120)
T ss_dssp             CCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSC-CSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEE
T ss_pred             CCCCCCCCCCcEEEecCCCEEEEEECCCCCCCCC-cEEEEEEEEEECCCCCceEEEeccCCccEEEeCCCCCCCEEEEEE
Confidence            44678899999999999999999999887 4444 89999999998765555543  34457899999999999999999


Q ss_pred             EEEcCCcCCCCCCCcceEEeccc
Q psy12425        555 YAENVYGRSDPSTTSDLITTYGE  577 (591)
Q Consensus       555 ~A~n~~G~~~~s~~~~~~~t~~~  577 (591)
                      +|.|..|.|.+|....+.|.++.
T Consensus        93 ~A~n~~G~g~~S~~~~~~T~~~~  115 (120)
T 1x5f_A           93 MAQNKHGSGESSAPLRVETQPES  115 (120)
T ss_dssp             EEECSSCEEEECCCEEEECCCCC
T ss_pred             EEECCCccCCCCCCEEEEeCCCC
Confidence            99999999999988765443333

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.4e-14  Score=105.51  Aligned_cols=97  Identities=18%  Similarity=0.271  Sum_probs=80.8

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      +.|.+|.++++...+.+++.|+|++|...++ .+.+|+|+|+......|.... ...+.+.|.+|.|++.|.|+|+|.|.
T Consensus         6 ~~P~~P~~l~~~~~~~~si~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~   83 (106)
T 2ed8_A            6 SGPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIE-VDGLSYKLEGLKKFTEYSLRFLAYNR   83 (106)
T ss_dssp             CCCCCCEEEEEECSSTTEEEEEEECCSSCSS-CCCEEEEEEEETTTCCEEEEE-ECSSCEEEESCCTTCEEEEEEEEECS
T ss_pred             CCCcCCceeEEEecCCCEEEEEECCCCCCCC-CeeEEEEEEEECCCCceEEEe-CCccEEEECCCCCCCEEEEEEEEEeC
Confidence            5788999999999999999999998864444 899999999988777776553 34689999999999999999999999


Q ss_pred             CcCCCCCCCcceEEeccccc
Q psy12425        560 YGRSDPSTTSDLITTYGELL  579 (591)
Q Consensus       560 ~G~~~~s~~~~~~~t~~~~p  579 (591)
                      .|.|.+|....+ +|.+.+|
T Consensus        84 ~G~g~~S~~~~~-~T~~~~P  102 (106)
T 2ed8_A           84 YGPGVSTDDITV-VTLSDSG  102 (106)
T ss_dssp             SCEEEECCCEEE-ECCCCCC
T ss_pred             CccCCCcCCEEE-EcCCCCC
Confidence            999999987654 5554443

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.53  E-value=6e-13  Score=113.73  Aligned_cols=191  Identities=15%  Similarity=0.099  Sum_probs=128.4

Q ss_pred             CCCCCCCCcceEEe-cCceEEEEecCCCCCCCcceeeEEEEEEecCC------CceEEEEe--ecCcceEEEcCCcCCcE
Q psy12425         88 LPGPPIGPLDVSEI-TKHTCTLHWNPPKYDGGLKVTHYVVERRDISM------PHWICIST--TCHDTTFIVQGLTEGQE  158 (591)
Q Consensus        88 ~p~~p~~~~~~~~~-~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~------~~~~~~~~--~~~~~~~~i~~l~~~~~  158 (591)
                      +|.+|.. +..... ...+++++|.++.. ++.. ..|.+.++....      ..+..+..  ......+.+.+|.++..
T Consensus         4 pP~~P~~-l~c~~~~~~~~~~~~W~p~~~-~~~~-~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~   80 (215)
T 1cd9_B            4 PPASPSN-LSCLMHLTTNSLVCQWEPGPE-THLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQY   80 (215)
T ss_dssp             CCCCCEE-EEEEEETTTTEEEEEEECCSC-CSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSC
T ss_pred             CCCCCee-eeeecCCCcccEEEEecCCCC-CCCc-eeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccceE
Confidence            3444443 333444 46799999998764 3333 569998876532      22433332  12345667778999999


Q ss_pred             EEEEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEee------cCCeEEEEEecCCCCCCcceEEEEEEee-ec
Q psy12425        159 YLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQV------GGDFVNLSWDKPLDDGGSRIQGYWIDKH-EV  231 (591)
Q Consensus       159 y~~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------~~~~v~l~w~~~~~~~~~~~~~y~~~~~-~~  231 (591)
                      |.|+|.|.|..|.+..... .  ........|.+|..+.+...      ....+.|+|.+|.. .+..+..|.|.++ ..
T Consensus        81 Y~~~V~A~N~~G~~~s~~~-~--~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~-~~~~~l~Y~v~y~~~~  156 (215)
T 1cd9_B           81 MAIWVQAENMLGSSESPKL-C--LDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKP-SEYMEQECELRYQPQL  156 (215)
T ss_dssp             EEEEEEEEETTEEEECCCE-E--ECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGG-GTTSCEEEEEEEEESS
T ss_pred             EEEEEEEECCCCCccCccE-E--EchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCC-CCeEEEEEEEEEccCC
Confidence            9999999999887532211 1  11111235667766665554      56789999998864 3334579999999 67


Q ss_pred             CCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEc
Q psy12425        232 GSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK  285 (591)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~  285 (591)
                      +...|..+.........+.+.+|.++..|.++++|.+..|.+.++..+..+.+.
T Consensus       157 ~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~  210 (215)
T 1cd9_B          157 KGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR  210 (215)
T ss_dssp             TTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEEC
T ss_pred             CCCCcEEEecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCcccee
Confidence            777888765444456789999999999999999999988877776666555544

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.53  E-value=5.3e-14  Score=120.98  Aligned_cols=126  Identities=18%  Similarity=0.175  Sum_probs=84.7

Q ss_pred             CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecC-CCCCC--CCCeeeeecCCeeEEEeeccccCCCcceeeEEE
Q psy12425        442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD-RPDPP--QFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV  518 (591)
Q Consensus       442 ~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~-~p~~p--~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v  518 (591)
                      ....+++.+|.+...|.|++.|.|..|.+..+..+.+.. .+.+|  ..+.+...+.+++.|+|.+|..++| .|++|+|
T Consensus        44 ~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~~~~~~~~~sv~l~W~~P~~~~G-~i~~Y~v  122 (232)
T 4go6_B           44 DYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSG-KIIEYSV  122 (232)
T ss_dssp             -----CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEEEEEEEETTEEEEEEECCSCCSS-CCCEEEE
T ss_pred             CccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCeeeEEecCCCEEEEEEeCCCCCCC-ceeeEEE
Confidence            456789999999999999999999999875443333322 22222  2233445678899999999987766 8999999


Q ss_pred             EeeeCCCCc-------------eEEeceeee--eEE-------EEcCcccCceEEEEEEEEcCCcCCCCCCC
Q psy12425        519 EKREHPMSS-------------WIRVGNTRF--TTM-------AITGLSPGHQYEFRVYAENVYGRSDPSTT  568 (591)
Q Consensus       519 ~~~~~~~~~-------------~~~~~~~~~--~~~-------~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~  568 (591)
                      +++......             |..+.....  ..+       .+.+|.+++.|.|||+|.|.+|.|++|.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~t~Y~frV~A~N~~G~Gp~S~v  194 (232)
T 4go6_B          123 YLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQV  194 (232)
T ss_dssp             EEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEESSSEEEEEEEEEECSSCBCCCEEE
T ss_pred             EEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecCccCCceEEEEEEECCCcCCCCccc
Confidence            998765433             222211111  122       24578999999999999999999998864

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.53  E-value=9.5e-15  Score=151.41  Aligned_cols=225  Identities=16%  Similarity=0.194  Sum_probs=156.0

Q ss_pred             EEEEEcccCCCCceEEEEEE-EcCCee----eEEEEEEEEecCCCCCCCC--cceEEecCceEEEEecCCCCCCCcceee
Q psy12425         51 IIIFIKEIRKEDAGDYTVNL-SNSSGS----VSGTFTINITGLPGPPIGP--LDVSEITKHTCTLHWNPPKYDGGLKVTH  123 (591)
Q Consensus        51 ~~l~i~~~~~~d~g~Y~c~~-~n~~g~----~~~~~~l~v~~~p~~p~~~--~~~~~~~~~~~~l~w~~p~~~~~~~~~~  123 (591)
                      ..+.|.+|.+...|.|++.| .|..|.    ...+..+.+.+.+.+|..|  +.+......++.|+|.+|...+| .+.+
T Consensus       549 ~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG-~I~~  627 (897)
T 2dtg_E          549 PGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITH  627 (897)
T ss_dssp             CEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEECSSSCEEEEEECCCCSSS-SCSE
T ss_pred             cceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEeCCCCEEEEEEeCCCCCCC-CeeE
Confidence            57889999999999999999 888876    3333445555555455444  34556677899999999975555 5889


Q ss_pred             EEEEEEecCCC-----------------------------------------------------------------ceEE
Q psy12425        124 YVVERRDISMP-----------------------------------------------------------------HWIC  138 (591)
Q Consensus       124 y~~~~~~~~~~-----------------------------------------------------------------~~~~  138 (591)
                      |.|.++.....                                                                 .|..
T Consensus       628 Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W~~  707 (897)
T 2dtg_E          628 YLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFED  707 (897)
T ss_dssp             EECCEEEECCCCSCTTCSSSCSCCCCCC----------------------------------------------------
T ss_pred             EEEEEEECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhhhhhhhheeeeEEE
Confidence            99987653220                                                                 1110


Q ss_pred             E--------------------------------EeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCccCcccccCC
Q psy12425        139 I--------------------------------STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP  186 (591)
Q Consensus       139 ~--------------------------------~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~~~~~~~~~~  186 (591)
                      .                                ........+.+.+|.+++.|.|+|.|.|..|.+........+...+.
T Consensus       708 ~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~T~  787 (897)
T 2dtg_E          708 YLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTM  787 (897)
T ss_dssp             ----------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECC
T ss_pred             ccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEecc
Confidence            0                                00113368999999999999999999999997664221222333222


Q ss_pred             --CCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEe--eecCCceeeecCcccCCcEEE
Q psy12425        187 --YDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNV--AICAPSQINIPNLIEGRQYEF  262 (591)
Q Consensus       187 --~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~~~y  262 (591)
                        ..+|.+|..+.+.....+++.|+|.+|..+++ .+.+|.|+++..+...+.....  .......+++.+|.++ .|.|
T Consensus       788 ~~~~~p~~P~~l~~~~~~~~sv~LsW~~P~~~nG-~I~~Y~V~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~pg-tY~~  865 (897)
T 2dtg_E          788 PEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSV  865 (897)
T ss_dssp             CCCCCCCCCCCCCCCSSSSSCCCCCCCCCCSCSS-CEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECC
T ss_pred             CccCCCCCCcceEEEeCCCCEEEEEECCCCCCCC-CEEEEEEEEEECCCcceEEEEeeeeecccCcEEECCCCCC-cEEE
Confidence              24567777777777788899999999876554 5899999998766422111110  0124567899999999 6999


Q ss_pred             EEEEEcCCCCCCCCCC
Q psy12425        263 RVYAQNEAGLSLPSSA  278 (591)
Q Consensus       263 ~c~a~n~~g~~~~s~~  278 (591)
                      +++|.|..|.+.++..
T Consensus       866 rV~A~n~~G~G~~S~~  881 (897)
T 2dtg_E          866 RIRATSLAGNGSWTEP  881 (897)
T ss_dssp             CCCEEETTBCCCCCCC
T ss_pred             EEEEEeCCcccCCCCC
Confidence            9999999998876543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=1.1e-13  Score=101.63  Aligned_cols=94  Identities=28%  Similarity=0.490  Sum_probs=82.2

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEE-EeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+. ..+...+|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            4678888888888999999999999999999999999999998877766544 456677999999999999999999999


Q ss_pred             CCcceeeeeEEEEec
Q psy12425        370 KGGVKSTKAELIIMT  384 (591)
Q Consensus       370 ~~g~~~~~~~l~v~~  384 (591)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999988888888753

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=7.1e-14  Score=103.28  Aligned_cols=87  Identities=14%  Similarity=0.146  Sum_probs=77.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+ +.|.+.+.|+|++..+..+.++.+...+....|.|.+++.+|+|.|+|.    .|.....+
T Consensus        15 ~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~   89 (103)
T 2dku_A           15 LTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQSRA   89 (103)
T ss_dssp             CCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----CSSCBCCE
T ss_pred             CCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----eCCceEEE
Confidence            567899999999999995 8899999999999999888888888777788999999999999999998    56667778


Q ss_pred             EEEEecCCCCCC
Q psy12425         82 TINITGLPGPPI   93 (591)
Q Consensus        82 ~l~v~~~p~~p~   93 (591)
                      .|.|...|.+|.
T Consensus        90 ~l~V~~~p~~p~  101 (103)
T 2dku_A           90 QLLVQGRRSGPS  101 (103)
T ss_dssp             EEEEECSCCCCS
T ss_pred             EEEEeCccCCCC
Confidence            999998887764

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.53  E-value=1.2e-13  Score=101.37  Aligned_cols=93  Identities=26%  Similarity=0.449  Sum_probs=84.6

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+..++...+|.|.++..+|+|.|+|.|.|.
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            46778888888889999999999999999999999999999998888888888888889999999999999999999999


Q ss_pred             CcceeeeeEEEEe
Q psy12425        371 GGVKSTKAELIIM  383 (591)
Q Consensus       371 ~g~~~~~~~l~v~  383 (591)
                      .|.....+.|.|.
T Consensus        85 ~g~~~~~~~l~V~   97 (99)
T 3puc_A           85 AGSVSSSCKLTIK   97 (99)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCcEeEEEEEEEE
Confidence            9998888888775

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.53  E-value=1.3e-13  Score=98.57  Aligned_cols=89  Identities=19%  Similarity=0.268  Sum_probs=77.5

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ..+|.+...+.+..+.+|+.+.|.|.+.+ +.+.+.|+++|..+..+.++.+..++..++|.|.++..+|+|.|+|.|.|
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            35788888889999999999999999986 45789999999999888899988888889999999999999999999977


Q ss_pred             CCcceeeeeEEEEe
Q psy12425        370 KGGVKSTKAELIIM  383 (591)
Q Consensus       370 ~~g~~~~~~~l~v~  383 (591)
                      .    ..++.|.|.
T Consensus        82 ~----~~sa~L~V~   91 (93)
T 1waa_A           82 T----KSAANLKVK   91 (93)
T ss_dssp             E----EEEEEEEEE
T ss_pred             C----cEEEEEEEE
Confidence            4    345666664

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=3.2e-14  Score=104.31  Aligned_cols=81  Identities=21%  Similarity=0.235  Sum_probs=70.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|+|..+.....   .......+|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus        18 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   94 (99)
T 2yr3_A           18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSA   94 (99)
T ss_dssp             CCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC---EEETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEEC
T ss_pred             CCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce---EeeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEE
Confidence            6678899999999999999999999999999998865532   2234567999999999999999999999999988887


Q ss_pred             EEEE
Q psy12425         82 TINI   85 (591)
Q Consensus        82 ~l~v   85 (591)
                      .|.|
T Consensus        95 ~l~V   98 (99)
T 2yr3_A           95 WVTV   98 (99)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            7776

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.52  E-value=2.1e-14  Score=105.64  Aligned_cols=84  Identities=19%  Similarity=0.396  Sum_probs=70.8

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCcee-EEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFK-FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      ..+.+.+|+++.|.|.+.|.|.+.+.|+|+|..+....+.. +....+..+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   95 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   95 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEE
Confidence            56889999999999999999999999999999987654321 23333445899999999999999999999999988888


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .|.|.
T Consensus        96 ~l~Vv  100 (100)
T 3caf_A           96 HLDVV  100 (100)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88773

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.52  E-value=1.4e-13  Score=103.80  Aligned_cols=99  Identities=23%  Similarity=0.478  Sum_probs=85.8

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCC-CCceEEEEeC-CeEEEEEcceecccceEEEEEEE
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEG-DTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      .+|.+...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+..++ +..+|.|.++..+|+|.|+|.|.
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   93 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV   93 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEE
Confidence            578888888889999999999999999999999999999988875 4566666554 35589999999999999999999


Q ss_pred             eCCcceeeeeEEEEecCCccc
Q psy12425        369 NKGGVKSTKAELIIMTAPKFN  389 (591)
Q Consensus       369 n~~g~~~~~~~l~v~~~p~~~  389 (591)
                      |..|.....+.|.|..+|...
T Consensus        94 N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           94 NEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             ETTEEEEEEEEEEEECCSCCC
T ss_pred             cCCCeEEEEEEEEEeCCCCCC
Confidence            999999989999998877643

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.52  E-value=5.5e-14  Score=106.55  Aligned_cols=98  Identities=21%  Similarity=0.286  Sum_probs=80.6

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      .+|.+|.++.+...+.+++.|+|++|...+ ..+.+|.|+|+......|... ....+.+.|.+|.+++.|.|+|+|.|.
T Consensus        16 ~~P~~P~~l~~~~~~~~si~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~   93 (116)
T 1x5g_A           16 QLPGPAPNLRAYAASPTSITVTWETPVSGN-GEIQNYKLYYMEKGTDKEQDV-DVSSHSYTINGLKKYTEYSFRVVAYNK   93 (116)
T ss_dssp             SCCCCCSSCEEEEEETTEEEEECCCCSCCS-SCCSEEEEEEEETTCCCCCCE-EECSSEEEECSCCTTCEEEEEEEEECS
T ss_pred             CCCcCCCccEEEecCCCEEEEEEeCCCCCC-CcccEEEEEEEECCCCccEEE-ecCCceEEEcCCCCCCEEEEEEEEEcC
Confidence            478899999999999999999999886544 479999999998876666433 345679999999999999999999999


Q ss_pred             CcCCCCCCCcceEEecccccc
Q psy12425        560 YGRSDPSTTSDLITTYGELLS  580 (591)
Q Consensus       560 ~G~~~~s~~~~~~~t~~~~p~  580 (591)
                      .|.|.+|....+ +|.+.+|+
T Consensus        94 ~G~g~~S~~~~~-~T~~~~P~  113 (116)
T 1x5g_A           94 HGPGVSTPDVAV-RTLSDSGP  113 (116)
T ss_dssp             SCCCCBCCCCCE-ECCCSSCC
T ss_pred             CCcCCCCCCEEE-ECCCCCCC
Confidence            999999987654 55554443

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=4.7e-14  Score=107.26  Aligned_cols=87  Identities=21%  Similarity=0.260  Sum_probs=74.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeec-CCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQS-DDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.|.|.+.+.|+|+|..+.. ..++.+... .  +|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        15 p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~-~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (118)
T 2eo9_A           15 PVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN-G--VLQIRYAKLGDTGRYTCIASTPSGEATWS   91 (118)
T ss_dssp             CCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEET-T--EEEEESCCGGGCCCEEEEEECSSCEEEEE
T ss_pred             CCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccC-C--EEEEccCCcCCCEEEEEEEEcCCCcEEEE
Confidence            6778999999999999999999999999999998865 344444332 2  79999999999999999999999999888


Q ss_pred             EEEEEecCCCC
Q psy12425         81 FTINITGLPGP   91 (591)
Q Consensus        81 ~~l~v~~~p~~   91 (591)
                      +.|.|...+.+
T Consensus        92 ~~l~V~~~~~p  102 (118)
T 2eo9_A           92 AYIEVQEFGVP  102 (118)
T ss_dssp             CCEEEECCSCC
T ss_pred             EEEEEEeCCCC
Confidence            99999876544

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.52  E-value=3.2e-13  Score=114.02  Aligned_cols=120  Identities=9%  Similarity=0.118  Sum_probs=83.4

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCC--CCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCe
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLP--SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT  323 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~--s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~  323 (591)
                      ...|.|.+++..|.|.|+|.|.+..+....  .+....+.+...  ..+|.+...+. ..+.+|+.+.|.|.+.+ +.+.
T Consensus        62 ~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~--~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~  137 (201)
T 1nkr_A           62 KANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGL--YEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDM  137 (201)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECS--SCCCEEEEESC-SEECTTCEEEEEEEESS-CCSE
T ss_pred             eEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeecc--CCCCceecCCC-CccCCCCeEEEEEeCCC-CCce
Confidence            467999999999999999999875321111  123344455432  34677766554 46889999999999987 5678


Q ss_pred             eEEecCCccCCCCCceEEEEeCC-eEEEEEcceecccceEEEEEEEeCC
Q psy12425        324 ISWLKGSREITPSARHHIFAEGD-TYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       324 v~W~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      +.|++++..+...........+. ...|.|.+++  |+|.|+|.|.+..
T Consensus       138 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          138 YHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             EEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            99999987765322112212221 4579999998  9999999998753

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.52  E-value=1.1e-12  Score=115.54  Aligned_cols=141  Identities=13%  Similarity=0.171  Sum_probs=97.9

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCC-CCCCcceEEEcCC-----------CccCCCeEEeeccccceeccccEEEE
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSL-PSSASNSVQIKDP-----------MAAKAPEIIVPLRNANAIQNHNAQFQ  313 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~-~s~~~~~~~~~~~-----------~~~~~p~~~~~~~~~~~~~g~~~~l~  313 (591)
                      ...|.|.+++..|.|.|.|.+.|..+... .......+.+...           ....+|.+...+....+.+|+.+.|.
T Consensus        80 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~  159 (256)
T 3umt_A           80 TAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSIT  159 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEE
T ss_pred             EEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEE
Confidence            34599999999999999999988632110 1112344555431           11126677777777889999999999


Q ss_pred             EEEcCCCCCeeEEecCC--ccCC------------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeee
Q psy12425        314 CTITGCPKPTISWLKGS--REIT------------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKA  378 (591)
Q Consensus       314 c~~~~~p~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~  378 (591)
                      |.+.+.+.+.+.|++..  ....            ...++.....+...+|.|.+++.+|+|.|+|.|.|..+.. ....
T Consensus       160 C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt  239 (256)
T 3umt_A          160 CRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGT  239 (256)
T ss_dssp             EEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCE
T ss_pred             EEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCE
Confidence            99999998899999842  2111            1245666666777889999999999999999999865443 3346


Q ss_pred             EEEEecCC
Q psy12425        379 ELIIMTAP  386 (591)
Q Consensus       379 ~l~v~~~p  386 (591)
                      .|.|..++
T Consensus       240 ~L~V~~~~  247 (256)
T 3umt_A          240 KLEIKRAA  247 (256)
T ss_dssp             EEEEC---
T ss_pred             EEEEECCC
Confidence            66676544

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.52  E-value=9.9e-13  Score=110.95  Aligned_cols=125  Identities=18%  Similarity=0.242  Sum_probs=100.1

Q ss_pred             ecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEE
Q psy12425        439 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIV  518 (591)
Q Consensus       439 ~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v  518 (591)
                      .......+.|.+|.+...|.|++.|.|..|.+..........+| +|.++.+...+.+++.|+|++|.  + ..+.+|.|
T Consensus        72 ~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~t~~~~p-~P~~l~~~~~~~~sv~l~W~~p~--~-~~i~~Y~v  147 (203)
T 2gee_A           72 VDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVP-PPTDLRFTNIGPDTMRVTWAPPP--S-IDLTNFLV  147 (203)
T ss_dssp             EETTCCEEEECSCCTTCEEEEEEEEESSSCBCCCEEEEEECCCC-CCEEEEEEEEETTEEEEEEECCS--S-CCCSEEEE
T ss_pred             cCCCccEEEeCCCCCCCEEEEEEEEEeCCCccccEeeeecCCCc-CCCceEEEEcCCCEEEEEEcCCC--C-CCccEEEE
Confidence            34567789999999999999999999998876554433334444 88889998899999999999874  3 37899999


Q ss_pred             EeeeCCC-CceEEe-ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCC
Q psy12425        519 EKREHPM-SSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST  567 (591)
Q Consensus       519 ~~~~~~~-~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~  567 (591)
                      .|+.... ..|... .....+.+.|.+|.|++.|.|+|+|.|..|.|+++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~  198 (203)
T 2gee_A          148 RYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR  198 (203)
T ss_dssp             EEEETTCGGGCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             EEEECCCCCccEEEEcCCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCee
Confidence            9987543 334333 345668999999999999999999999999988754

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.3e-13  Score=101.17  Aligned_cols=85  Identities=13%  Similarity=0.255  Sum_probs=71.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCC----------ceeEEEeCCeEEEEEcccCCCCceEEEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD----------RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      +.++.|.+|+++.|.|.+.+  .+.+.|+|||++|..+.          ++++...+..++|.|.+++.+|+|.|+|...
T Consensus        15 l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~   92 (112)
T 2e6q_A           15 LEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSC   92 (112)
T ss_dssp             CCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEE
T ss_pred             CCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEE
Confidence            56889999999999999987  77899999999998887          7777777777899999999999999977544


Q ss_pred             cCCeeeEEEEEEEEecCCCC
Q psy12425         72 NSSGSVSGTFTINITGLPGP   91 (591)
Q Consensus        72 n~~g~~~~~~~l~v~~~p~~   91 (591)
                      +   ....++.|.|...|..
T Consensus        93 ~---~~~ssA~L~V~~~p~~  109 (112)
T 2e6q_A           93 P---GVQDSAALTIQESSGP  109 (112)
T ss_dssp             T---TEEEEEEEEEECSSCS
T ss_pred             C---CeeEEEEEEEeCCCcc
Confidence            3   2356789999887653

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.52  E-value=2.5e-13  Score=117.72  Aligned_cols=175  Identities=12%  Similarity=0.179  Sum_probs=107.8

Q ss_pred             cccceeccccEEEEEEEcCCC--CCee--EEecCCc--cC-------------------CCCCceEEEEe--CCeEEEEE
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTI--SWLKGSR--EI-------------------TPSARHHIFAE--GDTYTLII  352 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v--~W~~~~~--~~-------------------~~~~~~~~~~~--~~~~~l~i  352 (591)
                      ..+.+.+|+.+.|.|.+.+.+  ...+  .|++...  ..                   ....++.+..+  ....+|.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (232)
T 3qhz_H            8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM   87 (232)
T ss_dssp             CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred             CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence            345688999999999997642  2344  9987321  00                   01135555543  35678999


Q ss_pred             cceecccceEEEEEEEeCC--------cceeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEEEeeeccCC--C
Q psy12425        353 NSVYGVDADEYVCRAVNKG--------GVKSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK--P  418 (591)
Q Consensus       353 ~~~~~~d~g~y~c~a~n~~--------g~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~--~  418 (591)
                      .+++.+|+|.|.|.+.+..        ........+.|..    +|.+...+   ....+..|+.+.|.|.+.+.++  .
T Consensus        88 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~---~~~~~~~g~~v~L~C~~~~~~P~~~  164 (232)
T 3qhz_H           88 TNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLA---PSSKSTSGGTAALGCLVKDYFPEPV  164 (232)
T ss_dssp             CSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEEC---C-------CEEEEEEEEEEEBSSCC
T ss_pred             CcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEec---ccccccCCCcEEEEEEEeeEeCCCe
Confidence            9999999999999999763        1223345566652    23222111   1123456999999999987543  3


Q ss_pred             eEEEeeCCeEeeeccceEEEecC----CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEe
Q psy12425        419 KITWYRDNEVIESGGHFHVETSE----RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI  478 (591)
Q Consensus       419 ~v~W~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v  478 (591)
                      .+.|++++..+...........+    ..+.|.|......| |.|+|.|.|..+.......+.+
T Consensus       165 ~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          165 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             EEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            67899998643211111111111    13568888888888 9999999999877655555543

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.52  E-value=5.7e-13  Score=113.86  Aligned_cols=127  Identities=14%  Similarity=0.083  Sum_probs=97.2

Q ss_pred             eeEEEEeccCCCcceeEEEEEEcCCCccc-eEEEEEec--CCCCCCCCCeeeee------cCCeeEEEeeccccCCCcce
Q psy12425        443 HAILTIRDASNVDTAPYRVVAENDLGMDS-AIVKIQIS--DRPDPPQFPTVEDI------GHDSLALVWRAPIWDGGSNI  513 (591)
Q Consensus       443 ~~~l~i~~~~~~~~g~y~c~a~n~~g~~~-~~~~~~v~--~~p~~p~~~~~~~~------~~~~v~l~W~~p~~~~~~~~  513 (591)
                      ...+.+.++.+...|.+++.|.|..|... ....+...  .+|.+|.++.+...      ..+++.|+|++|.. ++..+
T Consensus        67 ~~~~~~~~L~~~~~Y~~~V~A~N~~G~~~s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~-~~~~~  145 (215)
T 1cd9_B           67 NCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKP-SEYME  145 (215)
T ss_dssp             EEEEEGGGCCTTSCEEEEEEEEETTEEEECCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGG-GTTSC
T ss_pred             EEEECCcccccceEEEEEEEEECCCCCccCccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCC-CCeEE
Confidence            45566678889999999999999999762 23344333  36889988887765      67889999998864 44455


Q ss_pred             eeEEEEee-eCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcc
Q psy12425        514 TNYIVEKR-EHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD  570 (591)
Q Consensus       514 ~~y~v~~~-~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~  570 (591)
                      .+|+|.|+ ......|..+  .......+.|.+|.|++.|.|+|+|.|..|.|.+|..+.
T Consensus       146 l~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~  205 (215)
T 1cd9_B          146 QECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSP  205 (215)
T ss_dssp             EEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCC
T ss_pred             EEEEEEEccCCCCCCcEEEecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCC
Confidence            89999999 6677788754  233457899999999999999999999988776555443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.52  E-value=8.4e-14  Score=120.28  Aligned_cols=129  Identities=16%  Similarity=0.191  Sum_probs=85.7

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcC-CCCCee
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITG-CPKPTI  324 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~~v  324 (591)
                      ...|.|.+++..|.|.|+|.|.|..|...     ..+.+..+     +..........+.+|..+.|.|.+.| .|.|.|
T Consensus        82 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~-----~~v~~~~~-----~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i  151 (226)
T 4f80_A           82 KAALRIHNVTASDSGKYLCYFQDGDFYEK-----ALVELKVA-----ALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQI  151 (226)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEE-----EEEEEEEE-----BCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEE
T ss_pred             eEEEEEeeCchHHCeeEEEEEECCCcEEE-----EEEEEeec-----cceecccceeeeccCCceeeEEEeccCCCCCEE
Confidence            35799999999999999999999776432     22333211     11111222345678999999999988 599999


Q ss_pred             EEecCCccCCCCCceEEEEe-CC-eEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEec
Q psy12425        325 SWLKGSREITPSARHHIFAE-GD-TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT  384 (591)
Q Consensus       325 ~W~~~~~~~~~~~~~~~~~~-~~-~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~  384 (591)
                      .|++++..+.......+..+ .+ ...+.+..++.+|.|.|+|.|.|..|.....+.|.|..
T Consensus       152 ~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          152 QWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             EEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             EEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            99986554433332222222 22 23445667888999999999999999988888877754

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.52  E-value=9.5e-15  Score=113.33  Aligned_cols=119  Identities=23%  Similarity=0.295  Sum_probs=89.3

Q ss_pred             EEEEcCCCccceEE-EEEe---cCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCC--ceE-Eece
Q psy12425        461 VVAENDLGMDSAIV-KIQI---SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS--SWI-RVGN  533 (591)
Q Consensus       461 c~a~n~~g~~~~~~-~~~v---~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~--~~~-~~~~  533 (591)
                      +.|.|..|.+..+. .+.+   ...|.+|.++.+...+.+++.|+|++|...++ .+.+|+|+|+.....  .|. ....
T Consensus         3 V~A~n~~G~g~~S~~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~   81 (130)
T 1wfo_A            3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLA   81 (130)
T ss_dssp             CCCCCCCCCCCCCCCCSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCS-CCCEEEEEEEESSCCCSCCCEEEEC
T ss_pred             eEEEecccCCCCCCCcEEEEcCCCCCCCCCceEEEecCCCEEEEEEcCCCCCCC-ceEEEEEEEEECCCCCceEEEEEeC
Confidence            45678887764332 1222   35688999999999999999999998874444 789999999876543  232 2344


Q ss_pred             eeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEeccccccC
Q psy12425        534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYGELLSG  581 (591)
Q Consensus       534 ~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~  581 (591)
                      .....+.|.+|.|++.|.|+|+|.|..|.|++|.... ++|...+|+.
T Consensus        82 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~-~~T~~~~pp~  128 (130)
T 1wfo_A           82 PSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALV-VTTEKRSGPS  128 (130)
T ss_dssp             TTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEE-ECCSSCCCCC
T ss_pred             CCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEE-EecCCCCCCC
Confidence            5567999999999999999999999999999988754 4565555544

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.52  E-value=3.7e-13  Score=117.28  Aligned_cols=175  Identities=15%  Similarity=0.210  Sum_probs=108.2

Q ss_pred             ccccceeccccEEEEEEEcC--CCCCeeEEecCCccC-------------------CCCCceEEEEe--CCeEEEEEcce
Q psy12425        299 LRNANAIQNHNAQFQCTITG--CPKPTISWLKGSREI-------------------TPSARHHIFAE--GDTYTLIINSV  355 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~--~p~~~v~W~~~~~~~-------------------~~~~~~~~~~~--~~~~~l~i~~~  355 (591)
                      +..+.+.+|+.+.|.|.+.+  .+...+.|++.....                   ....++.+..+  ....+|.|.++
T Consensus         6 ~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   85 (248)
T 3u2s_H            6 SGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSL   85 (248)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            34566889999999999976  345689998732110                   01245555443  35678999999


Q ss_pred             ecccceEEEEEEEeCC----------------------cceeeeeEEEEec----CCcccCCCCcccceeecCCCeEEEE
Q psy12425        356 YGVDADEYVCRAVNKG----------------------GVKSTKAELIIMT----APKFNVPPRFRDTAYFDKGENVVVK  409 (591)
Q Consensus       356 ~~~d~g~y~c~a~n~~----------------------g~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~  409 (591)
                      +.+|+|.|.|.+.+..                      ........+.|..    +|.+...+   ....+..|+.+.|.
T Consensus        86 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~---~~~~~~~g~~~~L~  162 (248)
T 3u2s_H           86 RVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLA---PSSKSTSGGTAALG  162 (248)
T ss_dssp             CGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEEC---CC------CEEEEE
T ss_pred             CHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeC---CCccccCCCcEEEE
Confidence            9999999999998742                      1122335566652    22222111   11223468999999


Q ss_pred             Eeeecc-C-CCeEEEeeCCeEeeeccceEEEecC----CeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        410 IPFTGY-P-KPKITWYRDNEVIESGGHFHVETSE----RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       410 c~~~~~-p-~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      |.+.+. | .+.+.|++++..+...........+    ..+.|+|.....++ |.|+|.|.|..+.......+.
T Consensus       163 C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  235 (248)
T 3u2s_H          163 CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  235 (248)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEc
Confidence            999874 4 4579999988643211111111111    13568888888888 999999999977655544443

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.51  E-value=1.6e-13  Score=99.11  Aligned_cols=89  Identities=21%  Similarity=0.403  Sum_probs=74.8

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCC--ccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGS--REITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++  ..+...  ..+........|.|.++..+|+|.|+|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE--LLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT--SEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc--EEEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            566766667788999999999999999999999999998  776544  3334455667899999999999999999999


Q ss_pred             CCcceeeeeEEEE
Q psy12425        370 KGGVKSTKAELII  382 (591)
Q Consensus       370 ~~g~~~~~~~l~v  382 (591)
                      ..|.....+.|.|
T Consensus        80 ~~G~~~~~~~l~V   92 (93)
T 1wit_A           80 ELGEDEAIFEVIV   92 (93)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEE
Confidence            9998887777766

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.51  E-value=5.3e-13  Score=117.55  Aligned_cols=164  Identities=13%  Similarity=0.148  Sum_probs=106.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECC--E---E----------eecCCceeEE--EeCCeEEEEEcccCCCCce
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--R---V----------VQSDDRFKFT--VLDDYIIIFIKEIRKEDAG   64 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--~---~----------~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g   64 (591)
                      |..+.+.+|++++|.|.+.+.|.+.+.|+|..  .   .          .....|+.+.  ......+|.|.+++++|+|
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG   89 (256)
T 3tf7_C           10 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSA   89 (256)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCS
T ss_pred             CceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCE
Confidence            67899999999999999999999999999832  1   1          1123455543  2345678999999999999


Q ss_pred             EEEEEEEcCCee----eEEEEEEEEecC-----------------CCCCC---CCcceEEecCceEEEEecCCCCCCCcc
Q psy12425         65 DYTVNLSNSSGS----VSGTFTINITGL-----------------PGPPI---GPLDVSEITKHTCTLHWNPPKYDGGLK  120 (591)
Q Consensus        65 ~Y~c~~~n~~g~----~~~~~~l~v~~~-----------------p~~p~---~~~~~~~~~~~~~~l~w~~p~~~~~~~  120 (591)
                      .|.|.+.|..+.    ....+.|.|...                 +.+|.   .|..+....+..++|.|.....  ...
T Consensus        90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~--~~~  167 (256)
T 3tf7_C           90 VYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS--HNY  167 (256)
T ss_dssp             EEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC--CSE
T ss_pred             EEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC--ceE
Confidence            999999987642    223356777651                 11221   2333445578899999975431  223


Q ss_pred             eeeEEEEEEecCCC--------------------ceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCC
Q psy12425        121 VTHYVVERRDISMP--------------------HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG  170 (591)
Q Consensus       121 ~~~y~~~~~~~~~~--------------------~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g  170 (591)
                      +.||+   ......                    .+...........+.|.++...+.+.|.|.|.|..|
T Consensus       168 v~W~k---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          168 MYWYR---QDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG  234 (256)
T ss_dssp             EEEEE---ECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred             EEEEE---ECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence            33332   111111                    011000122345799999999999999999998755

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.51  E-value=1.7e-14  Score=106.07  Aligned_cols=87  Identities=24%  Similarity=0.285  Sum_probs=71.1

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      .+|++|..+.+. .+.+++.|+|.+ .+|||++|++|.|+|+......|...  .......++|.+|.|++.|+|+|.|.
T Consensus         7 ~~P~pP~~~~~~-~~~~sv~L~W~p-~~dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~frV~A~   84 (114)
T 2kbg_A            7 REPSPPSIHGQP-SSGKSFKLSITK-QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAA   84 (114)
T ss_dssp             CCCCSCCEECCB-CSTTCEEEEECC-CCCSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECCCCTTCCEEEEEEEE
T ss_pred             CCccCCcccccc-cCCCEEEEEEEC-CCCCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcCCCCCCEEEEEEEEE
Confidence            367777665544 688999999995 46899999999999998766666433  34455789999999999999999999


Q ss_pred             cCCcCCCCCCC
Q psy12425        558 NVYGRSDPSTT  568 (591)
Q Consensus       558 n~~G~~~~s~~  568 (591)
                      |.+|.|.+|..
T Consensus        85 N~~G~s~pS~~   95 (114)
T 2kbg_A           85 NRLGYSEPTVY   95 (114)
T ss_dssp             CTTSCEEEEEE
T ss_pred             eCCcCcCCcCC
Confidence            99999998864

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.51  E-value=1.3e-13  Score=101.31  Aligned_cols=80  Identities=16%  Similarity=0.280  Sum_probs=67.7

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |+.+.+.+|+++.|.|.+ +.|.+.+.|+|+|..+..+ .++.+...+...+|.|.+++.+|+|.|+|.|.+    ...+
T Consensus        23 ~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~   97 (104)
T 1pd6_A           23 EPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCS   97 (104)
T ss_dssp             CSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT----EEEC
T ss_pred             CCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEECC----CcEE
Confidence            455889999999999999 7889999999999999887 788888778788999999999999999999943    3344


Q ss_pred             EEEEEe
Q psy12425         81 FTINIT   86 (591)
Q Consensus        81 ~~l~v~   86 (591)
                      ..|.|.
T Consensus        98 ~~l~V~  103 (104)
T 1pd6_A           98 TELFVK  103 (104)
T ss_dssp             CEEEEE
T ss_pred             EEEEEe
Confidence            555553

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.5e-14  Score=106.40  Aligned_cols=83  Identities=18%  Similarity=0.268  Sum_probs=70.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCC----ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD----RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      |.++.+.+|+++.|.|.+.+.| +.+.|+|||..+....    ++.+...+....|.|.+++.+|+|.|+|.|.|    .
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~   89 (101)
T 2edk_A           15 LEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG----G   89 (101)
T ss_dssp             CCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS----C
T ss_pred             CCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC----C
Confidence            5678899999999999999888 9999999999998776    66787777778999999999999999999987    2


Q ss_pred             EEEEEEEEecCC
Q psy12425         78 SGTFTINITGLP   89 (591)
Q Consensus        78 ~~~~~l~v~~~p   89 (591)
                      ...+.|.|..+|
T Consensus        90 ~~~~~l~V~~~P  101 (101)
T 2edk_A           90 QCEAELIVEEKQ  101 (101)
T ss_dssp             EECCBEEEECCC
T ss_pred             cEEEEEEEeCCC
Confidence            344667776544

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.51  E-value=6.3e-13  Score=115.01  Aligned_cols=155  Identities=12%  Similarity=0.112  Sum_probs=104.2

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee--EEEEEE
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV--SGTFTI   83 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~--~~~~~l   83 (591)
                      .|.+|++|+|.|.+.+ +...+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+.|..+..  +..+.|
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L   94 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL   94 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred             ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEE
Confidence            6899999999999974 4678999999987642111 00112245689999999999999999998875543  445788


Q ss_pred             EEecCCCCCCCC--cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEE
Q psy12425         84 NITGLPGPPIGP--LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLF  161 (591)
Q Consensus        84 ~v~~~p~~p~~~--~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~  161 (591)
                      .|......|...  .......+..++|.|....   .  ...|.+.+..  ...............|.|.++...+.+.|
T Consensus        95 ~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~---~--~~~~~w~k~g--~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y  167 (242)
T 1p6f_A           95 VVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDT---A--TSMFLLLKEG--RSSHVQRGYGKVQAEFPLGPVTTAHRGTY  167 (242)
T ss_dssp             EEECCSCCCEEEEESCSEEETTCEEEEEEECTT---S--CSEEEEEECS--SSCEEEEEECSSEEEEEEEECCGGGCEEE
T ss_pred             EeecccCCCceEccCCCccCCCCcEEEEEecCC---C--CCEEEEEECC--CccCccccCCCceEEEEeCCCccccCEEE
Confidence            887643333210  0123457889999998643   1  1234443322  11111122234567899999999999999


Q ss_pred             EEEEEccC
Q psy12425        162 HVMAVNEN  169 (591)
Q Consensus       162 ~~~a~n~~  169 (591)
                      +|.|.|..
T Consensus       168 ~C~a~n~~  175 (242)
T 1p6f_A          168 RCFGSYNN  175 (242)
T ss_dssp             EEEEEEET
T ss_pred             EEEEECCC
Confidence            99999864

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.51  E-value=2.1e-12  Score=115.43  Aligned_cols=137  Identities=12%  Similarity=0.195  Sum_probs=95.8

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCC--CCCCcceEEEcCCCc----------cCCCeEEeeccccceeccccEEEE
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSL--PSSASNSVQIKDPMA----------AKAPEIIVPLRNANAIQNHNAQFQ  313 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~--~s~~~~~~~~~~~~~----------~~~p~~~~~~~~~~~~~g~~~~l~  313 (591)
                      ...|.|.+++..|.|.|.|.+.|..|...  .......+.+.....          ..++.+...+....+.+|+.+.|.
T Consensus       104 ~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~  183 (282)
T 1qok_A          104 TAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTIT  183 (282)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEE
T ss_pred             eEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEE
Confidence            35799999999999999999999866211  011223455543211          124555666667778999999999


Q ss_pred             EEEcCCCCCeeEEec--CCccCC------------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeee
Q psy12425        314 CTITGCPKPTISWLK--GSREIT------------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKA  378 (591)
Q Consensus       314 c~~~~~p~~~v~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~  378 (591)
                      |.+.+.+ +.+.|++  ++..+.            ...++.+...+...+|.|.++..+|+|.|+|.|.|..+.. ....
T Consensus       184 C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt  262 (282)
T 1qok_A          184 CSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGT  262 (282)
T ss_dssp             EEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCE
T ss_pred             EEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCE
Confidence            9999998 8999999  454331            1345665556677899999999999999999998854322 3345


Q ss_pred             EEEEe
Q psy12425        379 ELIIM  383 (591)
Q Consensus       379 ~l~v~  383 (591)
                      .|.|.
T Consensus       263 ~l~V~  267 (282)
T 1qok_A          263 KLELK  267 (282)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            55554

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.51  E-value=5.6e-14  Score=104.37  Aligned_cols=83  Identities=20%  Similarity=0.285  Sum_probs=71.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.+.|.+ +.|+|+|..+....++.+...+....|.|.+++.+|+|.|+|.|.|.  ..+..+
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~~   91 (106)
T 2dlt_A           15 IADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY--ALSLSA   91 (106)
T ss_dssp             CCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS--CCCCCB
T ss_pred             CCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC--CceEEE
Confidence            567899999999999999988877 99999999998888888888888889999999999999999999998  334445


Q ss_pred             EEEEec
Q psy12425         82 TINITG   87 (591)
Q Consensus        82 ~l~v~~   87 (591)
                      .|.|..
T Consensus        92 ~l~V~~   97 (106)
T 2dlt_A           92 KLNFLE   97 (106)
T ss_dssp             CEEEEC
T ss_pred             EEEEEE
Confidence            555553

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.50  E-value=2.1e-13  Score=100.69  Aligned_cols=91  Identities=19%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEe--eccccCCCcceeeEEEEeeeC-CCCceEEeceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVW--RAPIWDGGSNITNYIVEKREH-PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W--~~p~~~~~~~~~~y~v~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      +.|.+|.++++..++.+++.|+|  .+|...+| . .+|.|.|+.. ....|... .   ..++|.+|.|++.|.|+|+|
T Consensus         8 ~~P~~p~~l~~~~~~~~sv~l~W~~~~P~~~ng-~-~~Y~v~y~~~~~~~~~~~~-~---~~~~i~~L~p~t~Y~f~V~A   81 (107)
T 1x5a_A            8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGG-N-LSYELHVLNQDEEWHQMVL-E---PRVLLTKLQPDTTYIVRVRT   81 (107)
T ss_dssp             CCCCCSCCCCEEEEETTEEEEECCCCCSSCCSS-C-CEEEEEEECSSCEEEEEES-S---SEEEEESCCSSCEEEEEEEE
T ss_pred             CCCCCCCceEEEecCCCEEEEEECCCCCCCCCC-c-eEEEEEEEeCCCCceEEEe-c---ceEEECCCCCCCEEEEEEEE
Confidence            57889999999999999999999  88876666 4 9999999865 22222222 1   12999999999999999999


Q ss_pred             EcCCcCCCCCCCcceEEecc
Q psy12425        557 ENVYGRSDPSTTSDLITTYG  576 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~~~t~~  576 (591)
                      .|.+|.|++|..+.+.|.++
T Consensus        82 ~~~~G~g~~S~~~~~~T~~~  101 (107)
T 1x5a_A           82 LTPLGPGPFSPDHEFRTSPP  101 (107)
T ss_dssp             ECSSSCCCCCCCEEEECCCC
T ss_pred             ECCCccCCCCCCEEEEECCC
Confidence            99999999999876544443

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.50  E-value=3e-13  Score=99.31  Aligned_cols=83  Identities=17%  Similarity=0.476  Sum_probs=69.8

Q ss_pred             cCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEE--ec---CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        401 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE--TS---ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       401 ~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~---~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      ..+..+.|.|.+.|.|.|.+.|+++|..+.........  ..   .....|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            45788999999999999999999999998766543222  11   12456999999999999999999999999999999


Q ss_pred             EEecCCCC
Q psy12425        476 IQISDRPD  483 (591)
Q Consensus       476 ~~v~~~p~  483 (591)
                      |.|..+|.
T Consensus        94 l~V~~~P~  101 (103)
T 1wwb_X           94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEECCCCC
Confidence            99988775

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.50  E-value=3.5e-13  Score=110.59  Aligned_cols=148  Identities=13%  Similarity=0.088  Sum_probs=102.9

Q ss_pred             CceeeeecCCeEEEEEEeccCC-CceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ-PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |..+.+.+|+++.|.|.+.+.| .+.+.|+|+|..+.....          .+.|.+++.+|+|.|+|.+.|..+  +..
T Consensus        11 p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~~~~--s~~   78 (170)
T 3ry4_A           11 PPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQTSL--SDP   78 (170)
T ss_dssp             SCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEETTSBC--CCC
T ss_pred             CCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEeCCCc--eEe
Confidence            4556799999999999999886 679999999998866532          356778999999999999997543  345


Q ss_pred             EEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEE
Q psy12425         81 FTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYL  160 (591)
Q Consensus        81 ~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  160 (591)
                      +.|.|...|.....+ ......+..+.|.|....   +.+...+.+.+  .+    ..+........+.|..+...+.+.
T Consensus        79 ~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~---~~p~~~~~W~~--~g----~~~~~~~~~~~L~i~~v~~~d~G~  148 (170)
T 3ry4_A           79 VHLTVLFEWLVLQTP-HLEFQEGETIMLRCHSWK---DKPLVKVTFFQ--NG----KSQKFSHLDPTFSIPQANHSHSGD  148 (170)
T ss_dssp             EEEEEECCSEEEECS-CSEECTTCCEEEEEEEGG---GCCEEEEEEEE--TT----EEEEEESSCCEEEESSCCGGGCEE
T ss_pred             EEEEEECCceEecCC-CceeecCCeEEEEEECCC---CCCCceEEEEE--CC----eEccccCCCCeEEEEeccccCCEE
Confidence            677777644221111 233446778999997532   22222333322  11    112223356789999999999999


Q ss_pred             EEEEEEccCCC
Q psy12425        161 FHVMAVNENGM  171 (591)
Q Consensus       161 ~~~~a~n~~g~  171 (591)
                      |+|.|.|..|.
T Consensus       149 Y~C~a~n~~g~  159 (170)
T 3ry4_A          149 YHCTGNIGYTL  159 (170)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEeCcCc
Confidence            99999998764

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.50  E-value=1.1e-13  Score=104.24  Aligned_cols=96  Identities=15%  Similarity=0.163  Sum_probs=76.1

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeecccc-CCCcceeeEEEEeeeCCCC---ceE-EeceeeeeEEEEcCcccCceEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIW-DGGSNITNYIVEKREHPMS---SWI-RVGNTRFTTMAITGLSPGHQYEFRV  554 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~~~~y~v~~~~~~~~---~~~-~~~~~~~~~~~i~~l~~~~~Y~~~v  554 (591)
                      .+|.+|.++.+..++.+++.|+|++|.. ..+..|.+|.|+|+.....   .|. .........++|.+|.|++.|.|+|
T Consensus         7 ~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   86 (114)
T 1x4y_A            7 GPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKM   86 (114)
T ss_dssp             SCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEE
T ss_pred             CCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCCcEeEEEcCCCCCCCEEEEEE
Confidence            4667888889999999999999998852 4556899999999866543   332 2233344689999999999999999


Q ss_pred             EEEcCCcCCCCCCCcceEEecc
Q psy12425        555 YAENVYGRSDPSTTSDLITTYG  576 (591)
Q Consensus       555 ~A~n~~G~~~~s~~~~~~~t~~  576 (591)
                      +|.|..|.|++|....+ +|.+
T Consensus        87 ~A~n~~G~g~~S~~v~~-~T~~  107 (114)
T 1x4y_A           87 QCFNEGGESEFSNVMIC-ETKA  107 (114)
T ss_dssp             EEECTTCCCCCCCCEEE-ECCC
T ss_pred             EEEcCCccCCCcCCEEE-EeCC
Confidence            99999999999998655 4444

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.50  E-value=2.3e-14  Score=108.51  Aligned_cols=100  Identities=21%  Similarity=0.257  Sum_probs=81.9

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      ..|.+|.++.+...+.+++.|+|++|.  ++ .+.+|+|+|+......|........+.+.|.+|.+++.|.|+|+|.|.
T Consensus        16 ~~P~~P~~l~~~~~~~~sv~l~W~~p~--~~-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   92 (115)
T 1x5z_A           16 GVPGQPLNFKAEPESETSILLSWTPPR--SD-TIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSP   92 (115)
T ss_dssp             CCCCCCEEEEEECSSSSEEEEEEECCS--CC-CCCEEEECBEESSSCCCBCCEECSSSEEEEECCCTTCEEEECEEEECS
T ss_pred             CCCCCCccCEeeeCCCCEEEEEEcCCC--CC-CccEEEEEEEeCCCCCceEEecCCCcEEEECCCCCCCeEEEEEEEECC
Confidence            467888888898889999999999875  23 789999999987766665444445589999999999999999999999


Q ss_pred             CcCCCCCCCcceEEeccccccCCC
Q psy12425        560 YGRSDPSTTSDLITTYGELLSGME  583 (591)
Q Consensus       560 ~G~~~~s~~~~~~~t~~~~p~~~~  583 (591)
                      .|.|.+|.... ++|...+|+.|+
T Consensus        93 ~G~g~~S~~~~-~~T~~~~P~~pp  115 (115)
T 1x5z_A           93 QGLGASTAEIS-ARTMQSSGPSSG  115 (115)
T ss_dssp             SCEEEECCCEE-EECCCCCCCCCC
T ss_pred             CcccCCCcCEE-EecCCCCCCCCC
Confidence            99999998765 466666666653

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=9.6e-14  Score=104.43  Aligned_cols=96  Identities=18%  Similarity=0.178  Sum_probs=76.2

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      ..|.+|.++++...+ +++.|+|++|...+ +.|.+|+|+|+......+........+.++|.+|.+++.|.|+|+|.|.
T Consensus        16 ~~P~~P~~l~~~~~~-~sv~l~W~~P~~~n-g~i~gY~i~y~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~   93 (116)
T 2edb_A           16 QVPDQPSSLHVRPQT-NCIIMSWTPPLNPN-IVVRGYIIGYGVGSPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNN   93 (116)
T ss_dssp             SCCCCCSCEEEEECS-SCEEEEECCCSCTT-BCCCEEEEEEEESSTTSEEEEEETTCCEEEECSCCSSSBEEEEEEEEET
T ss_pred             CCCCCCCCeEEEECC-CEEEEEEcCCCCCC-CceeEEEEEEEeCCCCeEEEEeCCCeeEEEeCCCCCCCEEEEEEEEEeC
Confidence            468899999999888 99999999987654 4799999999865444444445556689999999999999999999999


Q ss_pred             CcCCCCCCCcceEEeccccc
Q psy12425        560 YGRSDPSTTSDLITTYGELL  579 (591)
Q Consensus       560 ~G~~~~s~~~~~~~t~~~~p  579 (591)
                      +|.|+++..  .++|...+|
T Consensus        94 ~G~g~~~~~--~~~T~~~~P  111 (116)
T 2edb_A           94 AGEGVPLYE--SATTRSITS  111 (116)
T ss_dssp             TEECSCEEE--CCBCCCSSS
T ss_pred             CccCCCCcc--eeecccCCC
Confidence            999987653  234444343

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.50  E-value=8.2e-13  Score=114.70  Aligned_cols=121  Identities=14%  Similarity=0.281  Sum_probs=88.1

Q ss_pred             CCceeeecCcccCCcEEEEEEEEcCC-CCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccE-EEEEEE-cCCCC
Q psy12425        245 APSQINIPNLIEGRQYEFRVYAQNEA-GLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNA-QFQCTI-TGCPK  321 (591)
Q Consensus       245 ~~~~~~i~~l~~~~~~~y~c~a~n~~-g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~-~l~c~~-~~~p~  321 (591)
                      ....|.|.++...|.|.|+|.+.+.. |..   .....+.+..  .+..|.+...+....+.+|+.+ .|.|.+ .+.|.
T Consensus        75 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~---~~~~~l~V~~--~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~  149 (231)
T 2pet_A           75 SQGRLVLAEAQVGDERDYVCVVRAGAAGTA---EATARLNVFA--KPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA  149 (231)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEECGGGCEE---EEEEEEEEEB--CCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSC
T ss_pred             CCceEEEcccCcccCceEEEEEEecCCCce---EEEEEEEEEe--cCCCcEEecCCcceeecCCCceEEEEEEeECcccC
Confidence            34559999999999999999999876 322   2333444432  2344777766666777889888 999999 89999


Q ss_pred             CeeEEecCCccCCCCC----ceEEEEe-----CC----eEEEEEcceecccceEEEEEEEeC
Q psy12425        322 PTISWLKGSREITPSA----RHHIFAE-----GD----TYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       322 ~~v~W~~~~~~~~~~~----~~~~~~~-----~~----~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      +.+.|++++..+....    ++.+...     .+    ...|.|.....+|.|.|+|.|.|.
T Consensus       150 p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          150 PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            9999999998887655    4443321     11    146788766666799999999994

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.50  E-value=1.2e-13  Score=100.29  Aligned_cols=83  Identities=20%  Similarity=0.329  Sum_probs=71.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |..+.+.+|+++.|.|.+.+  .+.+.|+|+|..+....++.+.  +  ..|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~--~--~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   81 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI--G--EYLQIKGATPRDSGLYACTAARTVDSETWIF   81 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE--T--TEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe--C--CEEEECcCCcccCEEEEEEEccCCCcEEEEE
Confidence            67889999999999999986  5799999999999877665553  2  3799999999999999999999999988889


Q ss_pred             EEEEecCCC
Q psy12425         82 TINITGLPG   90 (591)
Q Consensus        82 ~l~v~~~p~   90 (591)
                      .|.|.+++.
T Consensus        82 ~l~V~~~~~   90 (95)
T 4hwu_A           82 MVNVTDAAE   90 (95)
T ss_dssp             EEEECCC--
T ss_pred             EEEEeCCcc
Confidence            999987543

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.50  E-value=9.9e-13  Score=111.12  Aligned_cols=163  Identities=12%  Similarity=0.147  Sum_probs=103.7

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEecCCc--cCC----------CCCceEEEEe---CCeEEEEEcceecccceE
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--EIT----------PSARHHIFAE---GDTYTLIINSVYGVDADE  362 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~~----------~~~~~~~~~~---~~~~~l~i~~~~~~d~g~  362 (591)
                      .+..+.+.+|+.+.|.|.+.+.+ +.+.|++...  ...          ...++.+..+   ....+|.|.+++.+|+|.
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~   85 (207)
T 1ypz_E            7 SPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGT   85 (207)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEE
T ss_pred             CCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEE
Confidence            34556788999999999998765 4899988532  110          1245555544   456799999999999999


Q ss_pred             EEEEEEeCCc---------c--eeeeeEEEEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCCeEe
Q psy12425        363 YVCRAVNKGG---------V--KSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDNEVI  429 (591)
Q Consensus       363 y~c~a~n~~g---------~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~  429 (591)
                      |.|.+.+..+         .  ......|.|...+....+|.    +.+..+ .+.|.|.+.+. |. +.+.|+++ ..+
T Consensus        86 Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~----v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l  159 (207)
T 1ypz_E           86 YFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPS----VFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKI  159 (207)
T ss_dssp             EEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCE----EEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEE
T ss_pred             EEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCe----EEEeCC-CCeEEEEEeeEeCCCeEEEEecC-Ccc
Confidence            9999998743         1  12345777765322222222    111111 26899999875 44 79999999 666


Q ss_pred             eeccceEEEecCCeeEEEEeccCC-CcceeEEEEEEcCCCc
Q psy12425        430 ESGGHFHVETSERHAILTIRDASN-VDTAPYRVVAENDLGM  469 (591)
Q Consensus       430 ~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~c~a~n~~g~  469 (591)
                      ...... +.... ...+.+..... ++.|.|+|.+.|..+.
T Consensus       160 ~~~~~~-~~~~~-~g~y~~~~~~~~~~~~~ytC~v~~~~~~  198 (207)
T 1ypz_E          160 VEFDPA-IVISP-SGKYSAVKLGQYGDSNSVTCSVQHNSET  198 (207)
T ss_dssp             EECCCE-EEECT-TSSEEEEECEEESSTTTCEEEEEETTEE
T ss_pred             cCCccc-eEEcC-CCcEEEEEeecccCCCcEEEEEEECCcc
Confidence            533221 11111 12333333333 6789999999998764

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.50  E-value=2.6e-13  Score=102.18  Aligned_cols=84  Identities=17%  Similarity=0.197  Sum_probs=74.0

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.+.  +.+.|+|++..+..+.++.+...+....|.|.+++.+|+|.|+|.|    |.....+
T Consensus        26 ~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~   99 (113)
T 2edh_A           26 LRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSA   99 (113)
T ss_dssp             CCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE----TTEEEEE
T ss_pred             CCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe----CCCCEEE
Confidence            567789999999999999775  6899999999998888998888888889999999999999999999    5667778


Q ss_pred             EEEEecCCCC
Q psy12425         82 TINITGLPGP   91 (591)
Q Consensus        82 ~l~v~~~p~~   91 (591)
                      .|.|...|..
T Consensus       100 ~l~V~~~p~~  109 (113)
T 2edh_A          100 MLTVRAMPSG  109 (113)
T ss_dssp             EEEECCCCCS
T ss_pred             EEEEeCCCCC
Confidence            8999877654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.49  E-value=1.5e-13  Score=112.89  Aligned_cols=150  Identities=15%  Similarity=0.167  Sum_probs=99.6

Q ss_pred             ceeeeecCCeEEEEEEecc--CCCceEEEEECCEEee----------cCCceeEEEeCCeEEEEEcccCCCCceEEEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAG--DQPMEVSLTKNGRVVQ----------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNL   70 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~   70 (591)
                      ..+.+.+|+++.|.|...+  .+.+.|.|+|++..+.          ...|+.+  ..+. +|.|.+++.+|+|.|+|.|
T Consensus         4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~--~~~g-sL~I~~v~~~D~G~Y~C~~   80 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI--LANG-DLKIKNLTRDDSGTYNVTV   80 (176)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE--CTTS-CEEESSCCGGGCEEEEEEE
T ss_pred             eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE--CCCC-cEEEcccccccCEEEEEEE
Confidence            3578899999999995433  5677999999997653          2344444  2333 4999999999999999999


Q ss_pred             EcCCeee--EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceE
Q psy12425         71 SNSSGSV--SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF  148 (591)
Q Consensus        71 ~n~~g~~--~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~  148 (591)
                      .|..|..  +..+.|.|...+..|..    . .....+.|.|......    ...+.+.+  .+  .  .+...   ..+
T Consensus        81 ~n~~g~~~~~~~~~l~V~~~~~~p~i----~-~~~~~v~L~C~~~g~p----~p~i~W~~--~g--~--~l~~~---~~~  142 (176)
T 1hng_A           81 YSTNGTRILNKALDLRILEMVSKPMI----Y-WECSNATLTCEVLEGT----DVELKLYQ--GK--E--HLRSL---RQK  142 (176)
T ss_dssp             EETTCCEEEEEEEEEEEECCCCCCEE----E-EETTTTEEEEECSSCS----SCEEEEEE--TT--E--EEEEE---SSS
T ss_pred             EeCCCCEEEEEEEEEEEeCCCCCCEE----E-ecCCcEEEEEEecCCC----CcEEEEEE--CC--E--ECCCC---CcE
Confidence            9999886  66688888876544331    1 2234588888643311    12222222  11  1  11111   124


Q ss_pred             EEcCCcCCcEEEEEEEEEccCCCCC
Q psy12425        149 IVQGLTEGQEYLFHVMAVNENGMGP  173 (591)
Q Consensus       149 ~i~~l~~~~~y~~~~~a~n~~g~~~  173 (591)
                      .+..+...+.+.|+|.|.|..|...
T Consensus       143 ~i~~~~~~d~G~Y~C~a~N~~g~~~  167 (176)
T 1hng_A          143 TMSYQWTNLRAPFKCKAVNRVSQES  167 (176)
T ss_dssp             EEEEECSCCSSCEEEEEEETTEEEE
T ss_pred             EEEEEEccCCeEEEEEEEecCCCce
Confidence            4456678899999999999888643

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.8e-13  Score=101.44  Aligned_cols=98  Identities=26%  Similarity=0.428  Sum_probs=84.0

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCC-CCceEEEEe-CCeEEEEEcceecccceEEEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAE-GDTYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+... .+...|.|.++..+|+|.|+|.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            3577777777788899999999999999999999999999988875 456666554 34568999999999999999999


Q ss_pred             EeCCcceeeeeEEEEecCCc
Q psy12425        368 VNKGGVKSTKAELIIMTAPK  387 (591)
Q Consensus       368 ~n~~g~~~~~~~l~v~~~p~  387 (591)
                      .|..|.....+.|.|..+|.
T Consensus        86 ~N~~g~~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAVNS  105 (110)
T ss_dssp             ECTTCCEEECCCEEEECCSC
T ss_pred             EECCCeEEEEEEEEEECCCC
Confidence            99999998889999987664

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.49  E-value=1.2e-13  Score=103.66  Aligned_cols=94  Identities=24%  Similarity=0.344  Sum_probs=76.0

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC--CceEEeceeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM--SSWIRVGNTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      ++|.+|.++.+...+.+++.|+|++|...+ +.+.+|+|+|+..+.  ..|.. .......+.|.+|.|++.|.|+|+|.
T Consensus         9 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~   86 (111)
T 1x5l_A            9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPN-GIILEYEIKYYEKDKEMQSYST-LKAVTTRATVSGLKPGTRYVFQVRAR   86 (111)
T ss_dssp             CCCCCCCCEECSCBCSSCEEEEECCCSCCC-SCCCEEEEEEEESSSCCSSCEE-EEESSSEEEECSCCTTCEEEECEEEE
T ss_pred             CCCCCCceEEEEEcCCCEEEEEECCCCCCC-CEEEEEEEEEEECCCCceeEEE-ecCCCCEEEEcCCCCCCEEEEEEEEE
Confidence            568888888888889999999999886444 479999999987653  23333 34456799999999999999999999


Q ss_pred             cCCcCCCCCCCcceEEec
Q psy12425        558 NVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       558 n~~G~~~~s~~~~~~~t~  575 (591)
                      |..|.|++|....+.|.+
T Consensus        87 n~~G~g~~S~~~~~~T~~  104 (111)
T 1x5l_A           87 TSAGCGRFSQAMEVETGK  104 (111)
T ss_dssp             ETTEECCCCCCEEEECCC
T ss_pred             eCCcCCCCcccEEEEcCC
Confidence            999999999987654443

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.49  E-value=3.2e-12  Score=112.60  Aligned_cols=126  Identities=14%  Similarity=0.173  Sum_probs=91.3

Q ss_pred             ceeeecCcccCCcEEEEEEEEcCCC---------CCCCCCCcceEEEcCCCcc----------CCCeEEeeccccceecc
Q psy12425        247 SQINIPNLIEGRQYEFRVYAQNEAG---------LSLPSSASNSVQIKDPMAA----------KAPEIIVPLRNANAIQN  307 (591)
Q Consensus       247 ~~~~i~~l~~~~~~~y~c~a~n~~g---------~~~~s~~~~~~~~~~~~~~----------~~p~~~~~~~~~~~~~g  307 (591)
                      ..|.|.+++..|.|.|.|.+.|...         ..........+.+......          .+|.+...+....+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            4699999999999999999988611         0111122344555533211          14567777778889999


Q ss_pred             ccEEEEEEEcCCCC-CeeEEecC--CccCC------------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425        308 HNAQFQCTITGCPK-PTISWLKG--SREIT------------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       308 ~~~~l~c~~~~~p~-~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      +.+.|.|.+.+.+. +.+.|++.  +....            ...++.+..++...+|.|.+++.+|+|.|+|.|.|..+
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            99999999999876 89999883  22211            23456666677778999999999999999999988543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.49  E-value=2.4e-12  Score=113.13  Aligned_cols=163  Identities=11%  Similarity=0.059  Sum_probs=105.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECC-----EEe---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG-----RVV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~-----~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++++|.|.+.+.|.+.+.|+|+.     ..+         ....++.+...+...+|.|.+++.+|+|.|.
T Consensus        11 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   90 (250)
T 3esu_F           11 TSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYF   90 (250)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEE
Confidence            67889999999999999999999999999953     111         1135666666667789999999999999999


Q ss_pred             EEEEcCCeee-EEEEEEEEecCCC-------------------CCCCCcceEEecCceEEEEecCCCCCC-CcceeeEEE
Q psy12425         68 VNLSNSSGSV-SGTFTINITGLPG-------------------PPIGPLDVSEITKHTCTLHWNPPKYDG-GLKVTHYVV  126 (591)
Q Consensus        68 c~~~n~~g~~-~~~~~l~v~~~p~-------------------~p~~~~~~~~~~~~~~~l~w~~p~~~~-~~~~~~y~~  126 (591)
                      |.+.|..+.. .....|.|...|.                   ....+.......+..++|.|....... ...+.||+ 
T Consensus        91 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k-  169 (250)
T 3esu_F           91 CQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVK-  169 (250)
T ss_dssp             EEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEE-
T ss_pred             EEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEE-
Confidence            9999876543 2335666665321                   111122344567888999998533110 11233332 


Q ss_pred             EEEecCC----------------------CceEEEEe-ecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425        127 ERRDISM----------------------PHWICIST-TCHDTTFIVQGLTEGQEYLFHVMAVN  167 (591)
Q Consensus       127 ~~~~~~~----------------------~~~~~~~~-~~~~~~~~i~~l~~~~~y~~~~~a~n  167 (591)
                        ...+.                      ..+..... ......+.|.++...+.+.|.|.+.+
T Consensus       170 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          170 --QRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             --ECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             --ECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence              21111                      11111111 12334699999999999999999986

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.49  E-value=6.6e-14  Score=107.15  Aligned_cols=87  Identities=18%  Similarity=0.213  Sum_probs=71.3

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      .|.+|.++++...+ +++.|+|++|...+ +.+.+|.|+|+......+........+.++|.+|.|++.|.|+|+|.|.+
T Consensus        27 ~P~~P~~l~~~~~~-~sv~l~W~~P~~~~-g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~  104 (126)
T 1x5i_A           27 VPEVPSSLHVRPLV-TSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNV  104 (126)
T ss_dssp             CCCSCSEEEEEEET-TEEEEEEECCSCTT-BCCCEEEEEECSSCGGGEEEECCTTCCEEEECSCCSSCEECCEEEEECSS
T ss_pred             CCCCCCeeEEEecC-CEEEEEEcCCCCCC-CCEeEEEEEEEcCCCCceEEEeCCCeeEEEEeCCCCCCEEEEEEEEEeCC
Confidence            68889999998887 99999999987544 47999999998533233333345566899999999999999999999999


Q ss_pred             cCCCCCCCc
Q psy12425        561 GRSDPSTTS  569 (591)
Q Consensus       561 G~~~~s~~~  569 (591)
                      |.|+++...
T Consensus       105 G~g~~s~~~  113 (126)
T 1x5i_A          105 GEGIPLYES  113 (126)
T ss_dssp             CBCCCCCCC
T ss_pred             ccCcceeeE
Confidence            999998753

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=4.4e-13  Score=101.02  Aligned_cols=84  Identities=20%  Similarity=0.256  Sum_probs=73.5

Q ss_pred             eeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEEE
Q psy12425          5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN   84 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~   84 (591)
                      +.+.+|+++.|.|.+. .|.+.+.|+|+|+.+..+.++.+...+...+|.|.+++.+|+|.|+|.|.|    ....+.|.
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~   97 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD----ESASFTVT   97 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS----CEEEEEEE
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec----CcEEEEEE
Confidence            6788999999999995 888999999999999888888888777778999999999999999999988    45678888


Q ss_pred             EecCCCCCC
Q psy12425         85 ITGLPGPPI   93 (591)
Q Consensus        85 v~~~p~~p~   93 (591)
                      |..+|....
T Consensus        98 V~~~p~~~~  106 (113)
T 2cpc_A           98 VTEPPVRII  106 (113)
T ss_dssp             EECCCCCCC
T ss_pred             EecCCchhc
Confidence            888775433

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.49  E-value=1e-13  Score=102.39  Aligned_cols=84  Identities=18%  Similarity=0.382  Sum_probs=74.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.+.|.+ +.|+|++..+..+.++.+...+...+|.|.+++.+|+|.|+|.    .|.....+
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~   89 (103)
T 2e7b_A           15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTSA   89 (103)
T ss_dssp             CCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----CSSCBCCB
T ss_pred             CccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----ECCcEEEE
Confidence            567899999999999999999888 9999999999888888888888888999999999999999998    45566678


Q ss_pred             EEEEecCCC
Q psy12425         82 TINITGLPG   90 (591)
Q Consensus        82 ~l~v~~~p~   90 (591)
                      .|.|...|.
T Consensus        90 ~l~V~~~p~   98 (103)
T 2e7b_A           90 TLTVTALPS   98 (103)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEeccc
Confidence            888887664

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.49  E-value=2.1e-13  Score=119.76  Aligned_cols=174  Identities=11%  Similarity=0.217  Sum_probs=110.5

Q ss_pred             EEeeccccceeccccEEEEEEEcCCCCCeeEEecCCcc--C---------------CCCCceEEEE-eCCeEEEEEccee
Q psy12425        295 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE--I---------------TPSARHHIFA-EGDTYTLIINSVY  356 (591)
Q Consensus       295 ~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~--~---------------~~~~~~~~~~-~~~~~~l~i~~~~  356 (591)
                      +...+..+.+.+|+.+.|.|.+. .+.+.+.|++....  .               ....++.+.. .....+|.|.+++
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   84 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   84 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence            34444567789999999999985 45789999885311  0               0123444432 1334589999999


Q ss_pred             cccceEEEEEEEeCC---cceeeeeEEEEec------CCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeC
Q psy12425        357 GVDADEYVCRAVNKG---GVKSTKAELIIMT------APKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRD  425 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~---g~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~  425 (591)
                      .+|+|.|.|.+.+..   ........|.|..      +|.+...+  .....+..|+.+.|.|.+.|. |. +.+.|+++
T Consensus        85 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~--~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  162 (252)
T 1oga_E           85 KNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFE--PSEAEISHTQKATLVCLATGFYPDHVELSWWVN  162 (252)
T ss_dssp             SCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEEC--CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             hhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEEC--CChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence            999999999999862   1112334566654      23222110  011123468999999999985 65 49999999


Q ss_pred             CeEeeeccceE---E---E-ecCC----eeEEEEeccCCC-cceeEEEEEEcCCCccc
Q psy12425        426 NEVIESGGHFH---V---E-TSER----HAILTIRDASNV-DTAPYRVVAENDLGMDS  471 (591)
Q Consensus       426 ~~~~~~~~~~~---~---~-~~~~----~~~l~i~~~~~~-~~g~y~c~a~n~~g~~~  471 (591)
                      |..+..+....   .   . ..+.    .+.|.|...... +.+.|+|.|.|......
T Consensus       163 g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          163 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             TEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            98876433211   0   0 0111    234677666543 57889999999876544

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.49  E-value=2.1e-12  Score=109.70  Aligned_cols=177  Identities=20%  Similarity=0.210  Sum_probs=124.1

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEee--cCcceEEE--cCCcCCcEEEEEE
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT--CHDTTFIV--QGLTEGQEYLFHV  163 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~--~~~~~~~i--~~l~~~~~y~~~~  163 (591)
                      +|++|.+ +........++.++|.++... +. ...|.+.++......|..+...  .....+.+  .+|.+...|.|+|
T Consensus         3 pP~~P~n-l~c~~~~~~~~~c~W~p~~~~-~~-~~~Y~l~y~~~~~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~V   79 (210)
T 3n06_B            3 PPGKPEI-FKCRSPNKETFTCWWRPGTDG-GL-PTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMV   79 (210)
T ss_dssp             CCCCCEE-EEEEBSSSSCEEEEEECCSSS-CC-CSEEEEEEEETTCCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEEE
T ss_pred             CCCCCeE-eEEEeCCCCeEEEEECCCCCC-CC-CceEEEEEEECCCCccccCCCCCCCCCeEEEeCCCCcccceeEEEEE
Confidence            4555554 455666778999999987743 33 4689999988766677765421  12234444  5688999999999


Q ss_pred             EEEccCCCCCCCCccCcccccCCCCCCCCCCCCeEEeec----CCeEEEEEecCCCCC---CcceEEEEEEeeecCCCcc
Q psy12425        164 MAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVG----GDFVNLSWDKPLDDG---GSRIQGYWIDKHEVGSDAW  236 (591)
Q Consensus       164 ~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~v~l~w~~~~~~~---~~~~~~y~~~~~~~~~~~~  236 (591)
                      .|.|..|.+......  +. ......|.+|..+.+....    ..++.|+|..|....   +.....|.|.++..+...|
T Consensus        80 ~A~N~~G~~~s~~~~--~~-~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~~~~  156 (210)
T 3n06_B           80 NATNQMGSSFSDELY--VD-VTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW  156 (210)
T ss_dssp             EEEETTEEEECCCEE--EC-GGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTCSSC
T ss_pred             EEEcCCCCeeCCcEE--Ec-hhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCCCCC
Confidence            999999876432211  11 1112356777766666543    478999999986543   2246899999998877778


Q ss_pred             EEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCC
Q psy12425        237 QRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGL  272 (591)
Q Consensus       237 ~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~  272 (591)
                      ....  ......+.|.+|.++..|.++++|.+..|.
T Consensus       157 ~~~~--~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~  190 (210)
T 3n06_B          157 EIHF--AGQQTEFKILSLHPGQKYLVQVRCKPDHGY  190 (210)
T ss_dssp             EEEE--EETCSEEEECCCCTTCEEEEEEEEEESSSC
T ss_pred             EEEe--ccCceEEEEeccCCCCEEEEEEEEecCCCc
Confidence            6542  235678999999999999999999997664

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=3.7e-13  Score=105.09  Aligned_cols=109  Identities=20%  Similarity=0.242  Sum_probs=85.2

Q ss_pred             CCC-CCCCCeeeeecCCeeEEEeeccc-cCCCcceeeEEEEeeeCCCCc--eEEec--eeeeeEEEEcCcccCceEEEEE
Q psy12425        481 RPD-PPQFPTVEDIGHDSLALVWRAPI-WDGGSNITNYIVEKREHPMSS--WIRVG--NTRFTTMAITGLSPGHQYEFRV  554 (591)
Q Consensus       481 ~p~-~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~~~~y~v~~~~~~~~~--~~~~~--~~~~~~~~i~~l~~~~~Y~~~v  554 (591)
                      .|. +|.++.+...+.+++.|+|++|. .+.++.+.+|+|.|+......  +....  ....+.++|.+|.+++.|.|+|
T Consensus        17 ~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   96 (134)
T 2edx_A           17 TPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWV   96 (134)
T ss_dssp             CCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEESCCTTCEEEEEE
T ss_pred             CCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccEEEeCCCCCCCEEEEEE
Confidence            454 77788888889999999999883 234457999999998765432  33332  4566899999999999999999


Q ss_pred             EEEcCCcCCCCCCCcceEEeccccccCCCCCceeee
Q psy12425        555 YAENVYGRSDPSTTSDLITTYGELLSGMEAPISLIT  590 (591)
Q Consensus       555 ~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~~~~~~  590 (591)
                      +|.|..|.|++|.... ++|...+|+.+|..+.+..
T Consensus        97 ~A~n~~G~g~~S~~~~-~~T~~~~P~~~P~~l~~~~  131 (134)
T 2edx_A           97 RAHTDVGPGPESSPVL-VRTDEDVPSGPPRKVESGP  131 (134)
T ss_dssp             EEEETTBCCCCCCCEE-EECCCCSSCCCCCCCCCCC
T ss_pred             EEEcCCCcCCCCCCEE-eecCCCCCCCCCceeEEEE
Confidence            9999999999998754 5777778878887776654

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.48  E-value=3.1e-13  Score=102.63  Aligned_cols=106  Identities=22%  Similarity=0.190  Sum_probs=85.3

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccC-CC-----cc--eeeEEEEeeeCC-CCceEEeceeeeeEEEEcCcccCceE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWD-GG-----SN--ITNYIVEKREHP-MSSWIRVGNTRFTTMAITGLSPGHQY  550 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~-~~-----~~--~~~y~v~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~Y  550 (591)
                      +.|++...+.+..++..++.|+|.+|... +|     ..  +..|.|.|.... ...+..+..+..+.++|.+|.|++.|
T Consensus        16 ~~~s~v~~p~v~~i~s~S~~LsW~~P~~~~~g~~~~~g~~~i~~Yev~~~~k~~~~~~~~~~~g~~ts~~v~~L~P~T~Y   95 (137)
T 1wk0_A           16 ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDY   95 (137)
T ss_dssp             HHTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESCSEEEECSCCTTCEE
T ss_pred             hccCCCCCcEEEEEccCEEEEEECCCCCccCccccccccCccEEEEEEEEecCCCCceEEEEecCccEEEEcCCCCCCEE
Confidence            45777888899999999999999988654 33     12  689999987653 35566666677789999999999999


Q ss_pred             EEEEEEEcCCcCCCCCCCcceEEeccccccCCCCCc
Q psy12425        551 EFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPI  586 (591)
Q Consensus       551 ~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~~  586 (591)
                      .|+|+|.|..|.|++|.... ++|.+..|..|.+|-
T Consensus        96 ~~rV~A~n~~G~G~~S~~~~-f~T~~~~P~~P~~p~  130 (137)
T 1wk0_A           96 HAKVQAEYNSIKGTPSEAEI-FTTLSCEPDIPNPPR  130 (137)
T ss_dssp             CEEEEEEETTEECCCCCCCC-EECCCSSSCCCSCSC
T ss_pred             EEEEEEEeCCCcCCCCCCEE-EECCCCCCCCCCCCE
Confidence            99999999999999999876 577777776666543

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.48  E-value=2e-13  Score=95.09  Aligned_cols=81  Identities=22%  Similarity=0.447  Sum_probs=70.2

Q ss_pred             cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      ..+.+.+|+.+.|.|.+.+ |.|.|.|++||..+..+.++.+...+....|.|.++..+|+|.|+|.|.    ..+..+.
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~----n~~~~a~   78 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAP----QDSRIFL   78 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECT----TTCEEEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEEC----CEEEEEE
Confidence            3466789999999999965 9999999999999999899998888888999999999999999999984    4567777


Q ss_pred             EEecCC
Q psy12425        476 IQISDR  481 (591)
Q Consensus       476 ~~v~~~  481 (591)
                      |.|..|
T Consensus        79 l~V~eP   84 (84)
T 2lu7_A           79 VSVEEP   84 (84)
T ss_dssp             EEECCC
T ss_pred             EEEECC
Confidence            877653

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.48  E-value=1.4e-13  Score=101.91  Aligned_cols=94  Identities=28%  Similarity=0.464  Sum_probs=84.3

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+...+...+|.|.++...|+|.|+|.|.|
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   91 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN   91 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence            35788888888899999999999999999999999999999998888888887777778999999999999999999999


Q ss_pred             CCcceeeeeEEEEe
Q psy12425        370 KGGVKSTKAELIIM  383 (591)
Q Consensus       370 ~~g~~~~~~~l~v~  383 (591)
                      ..|.....+.|.|.
T Consensus        92 ~~G~~~~~~~l~V~  105 (106)
T 1nct_A           92 SEGKQEAEFTLTIQ  105 (106)
T ss_dssp             SSCBCCEEEEEEEC
T ss_pred             CCCeEEEEEEEEEE
Confidence            99998877777764

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.48  E-value=4.4e-13  Score=99.93  Aligned_cols=83  Identities=22%  Similarity=0.415  Sum_probs=71.3

Q ss_pred             CCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEec-------CCeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425        402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS-------ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       402 ~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  474 (591)
                      .+..+.|.|.+.|.|.|.|+|++||..+....++.+...       .....|.|.++...|+|.|+|.|.|..|..+.++
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            567899999999999999999999999987665443321       1357899999999999999999999999999999


Q ss_pred             EEEecCCCCC
Q psy12425        475 KIQISDRPDP  484 (591)
Q Consensus       475 ~~~v~~~p~~  484 (591)
                      .+.+...|.+
T Consensus        94 ~l~v~~~P~~  103 (126)
T 1he7_A           94 MAAFMDNPFE  103 (126)
T ss_dssp             EECCCSCTTS
T ss_pred             EEEEEcCCCC
Confidence            9999988855

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.5e-13  Score=102.54  Aligned_cols=98  Identities=23%  Similarity=0.235  Sum_probs=77.5

Q ss_pred             CCCCCCCCCeeeee--cCCeeEEEeeccccCCCcceeeEEEEeeeCCC---CceEEe-ceeeeeEEEEcCcccCceEEEE
Q psy12425        480 DRPDPPQFPTVEDI--GHDSLALVWRAPIWDGGSNITNYIVEKREHPM---SSWIRV-GNTRFTTMAITGLSPGHQYEFR  553 (591)
Q Consensus       480 ~~p~~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~---~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~  553 (591)
                      .+|.+|.++.+...  +.+++.|+|.+|...++ .+.+|.|+|+....   ..|... .......+.|.+|.+++.|.|+
T Consensus         7 ~P~~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   85 (114)
T 2ede_A            7 GPTSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFR   85 (114)
T ss_dssp             CCCSCCEEEEEEECSSCSSCEEEEEECCSSCSS-CCSEEEEEEESCSSSCTTTSEEEEEETTCCEEEECSCCSSCEEEEE
T ss_pred             CCCCCCcceEEEEccCCCCEEEEEECCCCCCCC-ceeEEEEEEEeCCCCCccceEEEEECCCceEEEEcCCCCCCEEEEE
Confidence            35588998998877  77999999998865444 79999999987432   345433 3456679999999999999999


Q ss_pred             EEEEcCCcCCCCCCCcceEEeccccc
Q psy12425        554 VYAENVYGRSDPSTTSDLITTYGELL  579 (591)
Q Consensus       554 v~A~n~~G~~~~s~~~~~~~t~~~~p  579 (591)
                      |+|.|..|.|++|....+ +|.+..|
T Consensus        86 V~A~n~~G~g~~S~~~~~-~T~~~~p  110 (114)
T 2ede_A           86 IQARNSKGVGPLSDPILF-RTLKVSG  110 (114)
T ss_dssp             EEEECSSCBCCCCCCEEE-ECCCSSC
T ss_pred             EEEEeCCcCcCCcccEEE-EecCCCC
Confidence            999999999999998764 5554433

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.48  E-value=2.4e-12  Score=109.43  Aligned_cols=132  Identities=21%  Similarity=0.206  Sum_probs=100.7

Q ss_pred             eEEEEeccCCCcceeEEEEEEcCCCccc-eEEEEEec--CCCCCCCCCeeeeec----CCeeEEEeeccccCC---Ccce
Q psy12425        444 AILTIRDASNVDTAPYRVVAENDLGMDS-AIVKIQIS--DRPDPPQFPTVEDIG----HDSLALVWRAPIWDG---GSNI  513 (591)
Q Consensus       444 ~~l~i~~~~~~~~g~y~c~a~n~~g~~~-~~~~~~v~--~~p~~p~~~~~~~~~----~~~v~l~W~~p~~~~---~~~~  513 (591)
                      ..+.+.++.+...|.+++.|.|..|... ....+...  .+|.+|.++.+....    .+++.|+|++|....   |..+
T Consensus        62 c~~~~~~l~~~~~Y~~~V~A~N~~G~~~s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~  141 (210)
T 3n06_B           62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFT  141 (210)
T ss_dssp             EEECGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCC
T ss_pred             EEeCCCCcccceeEEEEEEEEcCCCCeeCCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEE
Confidence            3444456888889999999999999763 23334333  468899988887643    579999999876433   2246


Q ss_pred             eeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcC-CCCCCCcceEEecc
Q psy12425        514 TNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR-SDPSTTSDLITTYG  576 (591)
Q Consensus       514 ~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~-~~~s~~~~~~~t~~  576 (591)
                      .+|+|.|+......|..........+.|.+|.+++.|.|+|+|.|..|. |++|....+ +|++
T Consensus       142 ~~Y~v~y~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~-~Tp~  204 (210)
T 3n06_B          142 LLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFI-QIPS  204 (210)
T ss_dssp             EEEEEEEECTTCSSCEEEEEETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEE-ECCT
T ss_pred             EEEEEEEecCCCCCCEEEeccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeE-ECcC
Confidence            8999999988777887665555679999999999999999999999997 888887644 4443

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.48  E-value=8.1e-13  Score=115.24  Aligned_cols=166  Identities=13%  Similarity=0.063  Sum_probs=105.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECC--E---Eee---------cCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--R---VVQ---------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++++|.|.+.+.|.+.+.|+|+.  .   .+.         ...|+.+...+...+|.|.+++++|+|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (242)
T 2znx_A            8 PATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (242)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEE
Confidence            67899999999999999999989999999953  1   111         134666665566789999999999999999


Q ss_pred             EEEEcCCeee-EEEEEEEEecCCC----------CCC---CCcceEEecCceEEEEecCCCCC-CCcceeeEEEE-----
Q psy12425         68 VNLSNSSGSV-SGTFTINITGLPG----------PPI---GPLDVSEITKHTCTLHWNPPKYD-GGLKVTHYVVE-----  127 (591)
Q Consensus        68 c~~~n~~g~~-~~~~~l~v~~~p~----------~p~---~~~~~~~~~~~~~~l~w~~p~~~-~~~~~~~y~~~-----  127 (591)
                      |.+.|..+.. ...+.|.|...|.          ++.   .+.......+..++|.|...... ....+.||+-.     
T Consensus        88 C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~  167 (242)
T 2znx_A           88 CQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRL  167 (242)
T ss_dssp             EEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCE
T ss_pred             EeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCc
Confidence            9999886532 2346777776553          111   11122345678899999753211 01223344310     


Q ss_pred             -E---E-ec--------CCCceEEEEe-ecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425        128 -R---R-DI--------SMPHWICIST-TCHDTTFIVQGLTEGQEYLFHVMAVN  167 (591)
Q Consensus       128 -~---~-~~--------~~~~~~~~~~-~~~~~~~~i~~l~~~~~y~~~~~a~n  167 (591)
                       .   . ..        .......... ......+.|.++...+.+.|.|.|.|
T Consensus       168 ~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  221 (242)
T 2znx_A          168 EYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXD  221 (242)
T ss_dssp             EEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             EEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccC
Confidence             0   0 00        0111111110 12335799999999999999999986

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.48  E-value=2.8e-12  Score=111.73  Aligned_cols=126  Identities=10%  Similarity=0.138  Sum_probs=85.3

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCC--CCCcceEEEcCCCccC-------CCeEEeeccccceeccccEEEEEEE
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLP--SSASNSVQIKDPMAAK-------APEIIVPLRNANAIQNHNAQFQCTI  316 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~--s~~~~~~~~~~~~~~~-------~p~~~~~~~~~~~~~g~~~~l~c~~  316 (591)
                      ...|.|.+++..|.|.|+|.|.|..|....  ......+.+.......       .+.+...+....+.+|+.+.|.|.+
T Consensus        72 ~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  151 (238)
T 2p1y_A           72 NFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSY  151 (238)
T ss_dssp             BCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEEC
T ss_pred             eEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEE
Confidence            457999999999999999999987652111  1122344444211100       1155555667778999999999999


Q ss_pred             cCCCCCeeEEecCCccC--------------CCCCceEEEE--eCCeEEEEEcceecccceEEEEEEEeCC
Q psy12425        317 TGCPKPTISWLKGSREI--------------TPSARHHIFA--EGDTYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       317 ~~~p~~~v~W~~~~~~~--------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      .+.|.+.+.|++++...              ....++.+..  .+...+|.|.++..+|+|.|+|.|.|..
T Consensus       152 ~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          152 ENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             ecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            99999999999864211              0123444432  2345689999999999999999999974

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.48  E-value=6.6e-13  Score=114.17  Aligned_cols=129  Identities=13%  Similarity=0.219  Sum_probs=92.0

Q ss_pred             ceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEEcCCCccCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEE
Q psy12425        247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW  326 (591)
Q Consensus       247 ~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W  326 (591)
                      .+|.|.+++..|.|.|.|.+.+..+.....  ...+.+.    ..++..........+..+..+.+.|.+.+.|.|.|.|
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W  152 (218)
T 4frw_A           79 GSVLLRNAVQADEGEYECRVSTFPAGSFQA--RLRLRVL----VPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTW  152 (218)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEEETTEEEEE--EEEEEEE----BCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEE
T ss_pred             EEEEEeeccHHHCCceeEEEEeccCceeee--EEEEEEe----eeccceeeeeeeeeeeeccccceeeeccCCcCceEEE
Confidence            469999999999999999998865543221  1222222    1233333444455677899999999999999999999


Q ss_pred             ecCCccCCCCCceEEEEeCC---eEEEEEcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        327 LKGSREITPSARHHIFAEGD---TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      ++++..+.......  .++.   ...|.|.++...|.|.|+|.|.|..|.......+.|.
T Consensus       153 ~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          153 DTEVKGTTSSRSFK--HSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EESSCCEEEEEEEE--CSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             EECCcccccCceEe--cCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            99887664322211  1111   3379999999999999999999999988776666553

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.48  E-value=3.4e-14  Score=121.20  Aligned_cols=170  Identities=14%  Similarity=0.174  Sum_probs=104.9

Q ss_pred             EeeccccceeccccEEEEEEEcCCCC---CeeEEecCCccCCCCCce-EE-EEeC---CeEEEEEcceecccceEEEEEE
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGCPK---PTISWLKGSREITPSARH-HI-FAEG---DTYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~p~---~~v~W~~~~~~~~~~~~~-~~-~~~~---~~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      ...+....+.+|+.+.|.|.+.+.+.   +.|.| ++ ..+...... .. ..++   ...+|.|.++..+|.|.|+|.|
T Consensus         8 ~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~   85 (214)
T 1ow0_A            8 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA   85 (214)
T ss_dssp             EECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEE
T ss_pred             EECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEE
Confidence            34456677889999999999998754   68999 43 332211000 00 0011   2346888999999999999999


Q ss_pred             EeCCcceeeeeEEE---EecCCcccCCCCcccceeecCCCeEEEEEeeecc-CC-CeEEEeeCCeEeeeccceE---EEe
Q psy12425        368 VNKGGVKSTKAELI---IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PK-PKITWYRDNEVIESGGHFH---VET  439 (591)
Q Consensus       368 ~n~~g~~~~~~~l~---v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~-~~v~W~~~~~~~~~~~~~~---~~~  439 (591)
                      .|..+.......+.   +..+|.+...+.  ....+..|..+.|.|.+.|. |. +.|.|+++|..+.......   ...
T Consensus        86 ~~~~~~~~~~~~i~~~~~~~~P~v~~~~~--~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~  163 (214)
T 1ow0_A           86 AYPESKTPLTATLSKSGNTFRPEVHLLPP--PSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQE  163 (214)
T ss_dssp             CCSSCSSCEEEEEECCSSCCCCEEEEECC--CTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEEC
T ss_pred             ecCCCCCceeEeeccCCCCCCCEEEecCC--CHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCccc
Confidence            99876543333332   234454432211  11124678999999999985 43 4999999998876542111   111


Q ss_pred             ---cCC----eeEEEEeccCCCcceeEEEEEEcCCCc
Q psy12425        440 ---SER----HAILTIRDASNVDTAPYRVVAENDLGM  469 (591)
Q Consensus       440 ---~~~----~~~l~i~~~~~~~~g~y~c~a~n~~g~  469 (591)
                         .+.    ...|.+.....++.|.|+|.|.|....
T Consensus       164 ~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          164 PSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             SCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             ccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence               111    123344444334589999999998543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.47  E-value=1.1e-12  Score=116.90  Aligned_cols=168  Identities=10%  Similarity=0.046  Sum_probs=106.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCE-----Eee---------cCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGR-----VVQ---------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~-----~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++++|.|.+.+.|.+.+.|+|++.     .+.         ...|+.+...+...+|.|.+++.+|+|.|.
T Consensus        19 p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~   98 (276)
T 3auv_A           19 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY   98 (276)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEE
Confidence            678899999999999999999999999998641     221         134666666666789999999999999999


Q ss_pred             EEEEcCCeee-EEEEEEEEecCCC----------CCC----CCcceEEecCceEEEEecCCCCCC-CcceeeEEEE----
Q psy12425         68 VNLSNSSGSV-SGTFTINITGLPG----------PPI----GPLDVSEITKHTCTLHWNPPKYDG-GLKVTHYVVE----  127 (591)
Q Consensus        68 c~~~n~~g~~-~~~~~l~v~~~p~----------~p~----~~~~~~~~~~~~~~l~w~~p~~~~-~~~~~~y~~~----  127 (591)
                      |.+.|..+.. .....|.|...|.          .|.    .|.......+..++|.|....... ...+.||+-.    
T Consensus        99 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~  178 (276)
T 3auv_A           99 CQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKC  178 (276)
T ss_dssp             EEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCC
T ss_pred             EEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCC
Confidence            9999976542 3335677766542          111    112334556788999997532110 1233443310    


Q ss_pred             --E----Ee---------cCCCceEEEEe-ecCcceEEEcCCcCCcEEEEEEEEEccC
Q psy12425        128 --R----RD---------ISMPHWICIST-TCHDTTFIVQGLTEGQEYLFHVMAVNEN  169 (591)
Q Consensus       128 --~----~~---------~~~~~~~~~~~-~~~~~~~~i~~l~~~~~y~~~~~a~n~~  169 (591)
                        .    ..         .....+..... ......+.|.++...+.+.|.|.|.|..
T Consensus       179 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~  236 (276)
T 3auv_A          179 LEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF  236 (276)
T ss_dssp             EEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             cEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence              0    00         00111111111 1233479999999999999999999874

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.47  E-value=1.7e-13  Score=102.04  Aligned_cols=99  Identities=19%  Similarity=0.251  Sum_probs=79.4

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe-ceeeeeEEEEcCcccCceEEEEEEEEc
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAEN  558 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n  558 (591)
                      +.|.+|. +.+...+.+++.|+|++|. +.++.+.+|.|+|+......|... .....+.++|.+|.+++.|.|+|+|.|
T Consensus         6 ~~P~~p~-~~v~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   83 (107)
T 2dn7_A            6 SGPGRPT-MMISTTAMNTALLQWHPPK-ELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKN   83 (107)
T ss_dssp             CCCCCCE-EEEEECSTTEEEEEEECCS-SCSSCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEE
T ss_pred             CCCCCCc-EeEEecCCCEEEEEECCCC-CCCCceeEEEEEEEECCCCCCEEEEeCCCccEEEeCCCCCCCEEEEEEEEEc
Confidence            4677776 6777778999999999887 444579999999998877777665 344567999999999999999999999


Q ss_pred             CCcCCCCCCCcceEEeccccccCC
Q psy12425        559 VYGRSDPSTTSDLITTYGELLSGM  582 (591)
Q Consensus       559 ~~G~~~~s~~~~~~~t~~~~p~~~  582 (591)
                      ..|.|++|..  .+.|...+|..|
T Consensus        84 ~~G~g~~s~~--~~~T~~~~P~~p  105 (107)
T 2dn7_A           84 RAGLGEEFEK--EIRTPEDLSGPS  105 (107)
T ss_dssp             TTEEEEEEEE--EEECCCCCCCCC
T ss_pred             CCcccCCeee--EEeCCCCCCCCC
Confidence            9999999873  356665555544

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.47  E-value=6.1e-13  Score=99.48  Aligned_cols=87  Identities=14%  Similarity=0.248  Sum_probs=71.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCE-Eee-------cCCceeEEE-eCCeEEEEEcccCCCCceEEEEEEEc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGR-VVQ-------SDDRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~-~~~-------~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      |.++.+.+|+++.|.|.+.+.|.+.+.|+|++. .+.       ...++.+.. .....+|.|.+++.+|+|.|.|.+.|
T Consensus        13 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n   92 (108)
T 3m45_A           13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT   92 (108)
T ss_dssp             CCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc
Confidence            678999999999999999999999999999875 222       223555433 33467999999999999999999999


Q ss_pred             CCeeeEEEEEEEEecCC
Q psy12425         73 SSGSVSGTFTINITGLP   89 (591)
Q Consensus        73 ~~g~~~~~~~l~v~~~p   89 (591)
                       .|..+..+.|.|..+|
T Consensus        93 -~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           93 -MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             -SSCEEEEEEEEEECCC
T ss_pred             -CCCcEEEEEEEEEcCC
Confidence             8888888999998765

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.9e-13  Score=100.32  Aligned_cols=94  Identities=30%  Similarity=0.416  Sum_probs=79.3

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCC-CCceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      ..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+..++   +|.|.++..+|+|.|+|.|.
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~   82 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG---TLQIKNLRISDTGTYTCVAT   82 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTC---CEEEESCCTTTCCEEEEEEE
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCC---EEEEccCCcccCEEEEEEEE
Confidence            4678888888888899999999999999999999999999887763 3344443333   69999999999999999999


Q ss_pred             eCCcceeeeeEEEEecCC
Q psy12425        369 NKGGVKSTKAELIIMTAP  386 (591)
Q Consensus       369 n~~g~~~~~~~l~v~~~p  386 (591)
                      |..|.....+.|.|..+|
T Consensus        83 n~~g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           83 SSSGETSWSAVLDVTESG  100 (100)
T ss_dssp             CSSCCCBCCEEEEEESCC
T ss_pred             cCCCCEEEEEEEEEecCC
Confidence            999998888888887653

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.47  E-value=1.1e-12  Score=114.50  Aligned_cols=163  Identities=10%  Similarity=0.058  Sum_probs=108.5

Q ss_pred             CceeeeecCCeEEEEEEeccCC----CceEEEEECC--E---Eee---------cCCceeEEEeCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ----PMEVSLTKNG--R---VVQ---------SDDRFKFTVLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++++|.|.+.+.|    .+.+.|+|++  .   .+.         ...|+.+...++..+|.|.+++++|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (240)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence            6788999999999999999988    7899999952  2   111         13466666666778999999999999


Q ss_pred             eEEEEEEEcCCee-eEEEEEEEEecCCC--CCC----CCcceEEecCceEEEEecCCCCCC-CcceeeEEEEEEecCC--
Q psy12425         64 GDYTVNLSNSSGS-VSGTFTINITGLPG--PPI----GPLDVSEITKHTCTLHWNPPKYDG-GLKVTHYVVERRDISM--  133 (591)
Q Consensus        64 g~Y~c~~~n~~g~-~~~~~~l~v~~~p~--~p~----~~~~~~~~~~~~~~l~w~~p~~~~-~~~~~~y~~~~~~~~~--  133 (591)
                      |.|.|.|.|..+. ......|.|...+.  .|.    .+.......+..++|.|....... ...+.||+   ...+.  
T Consensus        88 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k---~~~g~~~  164 (240)
T 1moe_A           88 ATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVK---QRPEQGL  164 (240)
T ss_dssp             EEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEE---ECTTSCC
T ss_pred             EEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEE---ECCCCCc
Confidence            9999999998665 34456778876543  111    122334556788999997532110 12344433   11110  


Q ss_pred             --------------------CceEEEEe-ecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425        134 --------------------PHWICIST-TCHDTTFIVQGLTEGQEYLFHVMAVN  167 (591)
Q Consensus       134 --------------------~~~~~~~~-~~~~~~~~i~~l~~~~~y~~~~~a~n  167 (591)
                                          ........ ......+.|.++...+.+.|.|.|.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          165 EWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence                                11111110 12345799999999999999999985

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.47  E-value=2.3e-13  Score=113.75  Aligned_cols=158  Identities=10%  Similarity=0.082  Sum_probs=101.0

Q ss_pred             CceeeeecCCeEEEEEEecc-CCCceEEEEECCEEee---cCC-----------c--eeEEEeCCeEEEEEcccCCCCce
Q psy12425          2 PNALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQ---SDD-----------R--FKFTVLDDYIIIFIKEIRKEDAG   64 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~---~~~-----------~--~~~~~~~~~~~l~i~~~~~~d~g   64 (591)
                      |..+.+.+|++|+|.|.+.+ .+.+.|.|+|++..+.   ...           +  .++... ...+|+|.+++.+|+|
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G   83 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-QSYSLQLSNLKMEDTG   83 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-TTCCEEECSCCGGGCE
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-CCeEEEECCCCcccCc
Confidence            78899999999999999976 4567999999987552   110           0  022222 2458999999999999


Q ss_pred             EEEEEEEcCCeeeEEEEEEEEecCCCCCCCCcceE-EecCc-eEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEee
Q psy12425         65 DYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVS-EITKH-TCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT  142 (591)
Q Consensus        65 ~Y~c~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~-~~~~~-~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~  142 (591)
                      .|+|.+.+..|.....+.|.|...+..|....... ...+. .++|.|....   +.+...+.+..  .+.    .+   
T Consensus        84 ~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g---~~p~p~i~W~~--~g~----~l---  151 (193)
T 2if7_A           84 SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVED---ADDNVSFRWEA--LGN----TL---  151 (193)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEES---CCTTCEEEEEE--TTE----EE---
T ss_pred             eEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEec---CCCceEEEEEe--CCE----Ec---
Confidence            99999999988877788899987655443211111 11233 7899997532   11112233322  111    11   


Q ss_pred             cCcceEEEcCCcCC-cEEEEEEEEEccCCCC
Q psy12425        143 CHDTTFIVQGLTEG-QEYLFHVMAVNENGMG  172 (591)
Q Consensus       143 ~~~~~~~i~~l~~~-~~y~~~~~a~n~~g~~  172 (591)
                      .....+.+.....+ +.+.|+|.|.|..|..
T Consensus       152 ~~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          152 SSQPNLTVSWDPRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             ESSSEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred             CCCCeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence            12234555433333 6899999999987753

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.47  E-value=1.9e-13  Score=100.41  Aligned_cols=95  Identities=23%  Similarity=0.438  Sum_probs=79.7

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEE-EeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+......... ..++..+|.|.++...|+|.|+|.|.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            3566666677788899999999999999999999999999888776544333 445557899999999999999999999


Q ss_pred             CCcceeeeeEEEEecC
Q psy12425        370 KGGVKSTKAELIIMTA  385 (591)
Q Consensus       370 ~~g~~~~~~~l~v~~~  385 (591)
                      ..|.....+.|.|...
T Consensus        84 ~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           84 RAGEATFTVQLDVLAK   99 (100)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEec
Confidence            9999888888888654

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.4e-13  Score=104.58  Aligned_cols=88  Identities=26%  Similarity=0.407  Sum_probs=75.3

Q ss_pred             cCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       479 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      .+.|.+|.++.+...+.+++.|+|++|..+ | .+.+|+|+|+......|...  .......++|.+|.+++.|.|+|+|
T Consensus        15 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~-g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   92 (118)
T 2yrz_A           15 AGVPDTPTRLVFSALGPTSLRVSWQEPRCE-R-PLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRA   92 (118)
T ss_dssp             CSCCCCCCCCEECCCBTTEEEEECCCCCCS-S-CEEEEEEEEEBSSSCCEEEEEESCTTCCEEEEESCCTTCEEEEEEEE
T ss_pred             CCCCCCCCceEEEeCCCCEEEEEeCCCCCC-C-CccEEEEEEEECCCCceEEEEcCCCCcCEEEeCCCCCCCEEEEEEEE
Confidence            357889999999999999999999988654 3 89999999998776677655  3345689999999999999999999


Q ss_pred             EcCCcCCCCCCC
Q psy12425        557 ENVYGRSDPSTT  568 (591)
Q Consensus       557 ~n~~G~~~~s~~  568 (591)
                      .|..|.|++|..
T Consensus        93 ~n~~G~g~~S~~  104 (118)
T 2yrz_A           93 QSQEGWGREREG  104 (118)
T ss_dssp             EESSCEEEEEEE
T ss_pred             EcCCcCCCCcCC
Confidence            999999998864

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=5.2e-14  Score=106.20  Aligned_cols=86  Identities=10%  Similarity=0.199  Sum_probs=73.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEE-eCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.+.|+|||..+..+.++.+.. .+...+|.|.+++.+|+|.|+|.+    |.....
T Consensus        20 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~~~~~   95 (115)
T 2cr6_A           20 LEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRAS   95 (115)
T ss_dssp             CCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----TTEECC
T ss_pred             CccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----CCeeEE
Confidence            567899999999999999999999999999999998887777653 355678999999999999999993    556667


Q ss_pred             EEEEEecCCCC
Q psy12425         81 FTINITGLPGP   91 (591)
Q Consensus        81 ~~l~v~~~p~~   91 (591)
                      +.|.|...|..
T Consensus        96 ~~L~V~~~p~~  106 (115)
T 2cr6_A           96 AALRVTEKPSV  106 (115)
T ss_dssp             EEEEEECCSSC
T ss_pred             EEEEEECCCce
Confidence            88999887654

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.47  E-value=3.8e-13  Score=115.18  Aligned_cols=167  Identities=14%  Similarity=0.148  Sum_probs=106.1

Q ss_pred             CCceeeeecCCeEEEEEEeccC-------CCceEEEEECCEE------ee---------c--CCceeEEE--eCCeEEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGD-------QPMEVSLTKNGRV------VQ---------S--DDRFKFTV--LDDYIIIF   54 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~-------p~~~v~W~~~~~~------~~---------~--~~~~~~~~--~~~~~~l~   54 (591)
                      .|..+.+.+|+++.|.|.+.+.       +.+.+.|+|++..      +.         .  ..|+.+..  .....+|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            4788999999999999999754       5789999998752      11         1  13333321  12345899


Q ss_pred             EcccCCCCceEEEEEEEcCCeee----EEEEEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEe
Q psy12425         55 IKEIRKEDAGDYTVNLSNSSGSV----SGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRD  130 (591)
Q Consensus        55 i~~~~~~d~g~Y~c~~~n~~g~~----~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~  130 (591)
                      |.+++.+|+|.|.|.+.+..+..    ...+.|.|...+..|..........+..++|.|.......+.+...+.+....
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~  165 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA  165 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSCCEEEEESST
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCCceEEEeCCC
Confidence            99999999999999999876332    24688888887655542111122357789999986432111222233332221


Q ss_pred             cCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCC
Q psy12425        131 ISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGM  171 (591)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~  171 (591)
                      .....    ........+.|..+..++.+.|+|.|.|..+.
T Consensus       166 ~~~~~----~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~  202 (214)
T 2zg1_A          166 LSPLD----PETTRSSELTLTPRPEDHGTNLTCQMKRQGAQ  202 (214)
T ss_dssp             TSSSC----SSCCCSSEEEECCCTTCCSCEEEEEEECC---
T ss_pred             CccCC----CCceeEEEEEEecccHHcCcEEEEEEEeCCCC
Confidence            11000    01234567888888888889999999986543

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.47  E-value=9.4e-13  Score=95.91  Aligned_cols=88  Identities=23%  Similarity=0.412  Sum_probs=78.2

Q ss_pred             eeccccceeccccEEEEEEEcCC-CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGC-PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS  375 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~  375 (591)
                      ..+.+..+.+|+.+.|.|.+.+. |.+.+.|++++..+....++.+...++..+|.|.++...|+|.|+|.|.|..|...
T Consensus         6 ~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   85 (97)
T 2bk8_A            6 GQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDS   85 (97)
T ss_dssp             CCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             ccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEe
Confidence            34456778999999999999997 99999999999999888888887778888999999999999999999999999988


Q ss_pred             eeeEEEEec
Q psy12425        376 TKAELIIMT  384 (591)
Q Consensus       376 ~~~~l~v~~  384 (591)
                      ..+.|.|..
T Consensus        86 ~~~~l~V~~   94 (97)
T 2bk8_A           86 SYAELFVKG   94 (97)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEEEe
Confidence            888888753

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.47  E-value=5.8e-12  Score=111.11  Aligned_cols=140  Identities=14%  Similarity=0.188  Sum_probs=95.6

Q ss_pred             CceeeecCcccCCcEEEEEEEEcCCCCCCC-CCCcceEEEcCCC---------ccCCCeEEeeccccceeccccEEEEEE
Q psy12425        246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLP-SSASNSVQIKDPM---------AAKAPEIIVPLRNANAIQNHNAQFQCT  315 (591)
Q Consensus       246 ~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~-s~~~~~~~~~~~~---------~~~~p~~~~~~~~~~~~~g~~~~l~c~  315 (591)
                      ...|.|.+++..|.|.|.|.|.|..+.... ......+.+..+.         ...+|.+...+....+.+|+.+.|.|.
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  164 (257)
T 3gkz_A           85 QVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCS  164 (257)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEE
T ss_pred             eEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEE
Confidence            347999999999999999999986322111 1123445554321         012456666666778899999999999


Q ss_pred             EcCCCCC-eeEEecC--CccCC------------CCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeeeE
Q psy12425        316 ITGCPKP-TISWLKG--SREIT------------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAE  379 (591)
Q Consensus       316 ~~~~p~~-~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~~  379 (591)
                      +.+.+.+ .+.|++.  +....            ...++.+...+...+|.|.+++.+|+|.|+|.|.+..... .....
T Consensus       165 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~  244 (257)
T 3gkz_A          165 ASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTK  244 (257)
T ss_dssp             ESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred             EccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEE
Confidence            9998887 8999984  22211            1245555566677789999999999999999998754433 23345


Q ss_pred             EEEecC
Q psy12425        380 LIIMTA  385 (591)
Q Consensus       380 l~v~~~  385 (591)
                      |.|...
T Consensus       245 l~v~~~  250 (257)
T 3gkz_A          245 LEIKRA  250 (257)
T ss_dssp             EEECCC
T ss_pred             EEEEeC
Confidence            555543

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.46  E-value=3.4e-13  Score=98.90  Aligned_cols=93  Identities=29%  Similarity=0.478  Sum_probs=79.5

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCc-eEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..... +....++...+|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            467777777788899999999999999999999999999988876543 4444555667899999999999999999999


Q ss_pred             CCcceeeeeEEEEe
Q psy12425        370 KGGVKSTKAELIIM  383 (591)
Q Consensus       370 ~~g~~~~~~~l~v~  383 (591)
                      ..|.....+.|.|.
T Consensus        84 ~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           84 EYGARQCEARLEVR   97 (99)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCceeEEEEEEEE
Confidence            99998888888775

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.46  E-value=5.8e-13  Score=101.93  Aligned_cols=90  Identities=8%  Similarity=0.125  Sum_probs=71.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEee--------cCCceeEEE-eCCeEEEEEcccCCCCceEEEEEEEc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQ--------SDDRFKFTV-LDDYIIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      |..+.+.+|++++|.|.+.+.|.+.+.|++++..+.        ...++.+.. .....+|.|.+++.+|+|.|.|.+.|
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   87 (124)
T 3rbg_A            8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYS   87 (124)
T ss_dssp             EEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEc
Confidence            568899999999999999999999999998665322        344555542 33457999999999999999999999


Q ss_pred             CCeeeEEEEEEEEecCCCCC
Q psy12425         73 SSGSVSGTFTINITGLPGPP   92 (591)
Q Consensus        73 ~~g~~~~~~~l~v~~~p~~p   92 (591)
                      . |.....+.|.|...|..+
T Consensus        88 ~-g~~~~~~~l~V~~~P~~~  106 (124)
T 3rbg_A           88 D-SVSTKEVKVIVLATMKGE  106 (124)
T ss_dssp             S-SEEEEEEEEEEECC----
T ss_pred             C-CCCcEEEEEEEEeCCCCC
Confidence            9 888899999999877543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=4.3e-13  Score=100.54  Aligned_cols=98  Identities=24%  Similarity=0.491  Sum_probs=84.7

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEE-EeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......... ..+...+|.|.++..+|+|.|+|.|.|
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   87 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN   87 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence            5788888888889999999999999999999999999999888766655443 334457899999999999999999999


Q ss_pred             CCcceeeeeEEEEecCCcc
Q psy12425        370 KGGVKSTKAELIIMTAPKF  388 (591)
Q Consensus       370 ~~g~~~~~~~l~v~~~p~~  388 (591)
                      ..|.....+.|.|..+|..
T Consensus        88 ~~g~~~~~~~l~V~~~p~~  106 (110)
T 2dm3_A           88 RAGQNSFSLELVVAAKESG  106 (110)
T ss_dssp             SSCEEEECCEEEEECCCCS
T ss_pred             CCCEEEEEEEEEEeCCCCC
Confidence            9999988999999887653

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.46  E-value=3.5e-13  Score=95.55  Aligned_cols=78  Identities=21%  Similarity=0.391  Sum_probs=66.5

Q ss_pred             CCeEEeecccc--ceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        292 APEIIVPLRNA--NAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       292 ~p~~~~~~~~~--~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ||.+..+..+.  .+.+|+.+.|.|.+.+ |.+.+.|+++|..+..+.++.+..++..++|.|.++..+|+|.|+|.|.|
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc
Confidence            45555554443  3568999999999866 88899999999999999999999999999999999999999999999965


Q ss_pred             C
Q psy12425        370 K  370 (591)
Q Consensus       370 ~  370 (591)
                      .
T Consensus        83 ~   83 (91)
T 2lvc_A           83 E   83 (91)
T ss_dssp             C
T ss_pred             e
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	591
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	2e-25
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	5e-10
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	5e-10
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	9e-10
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	3e-09
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	6e-21
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	3e-20
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	4e-19
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-20
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	7e-20
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-17
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	8e-20
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	1e-18
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	7e-17
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	4e-19
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	1e-15
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	2e-15
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	5e-19
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	3e-18
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	6e-18
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	6e-19
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	3e-12
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	5e-12
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	1e-18
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	5e-18
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	2e-15
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	1e-17
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	3e-14
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	8e-14
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	1e-17
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	1e-14
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	1e-12
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	2e-17
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	5e-17
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	3e-15
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	2e-17
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	3e-15
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	1e-14
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	2e-17
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	2e-15
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	8e-14
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	4e-17
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	2e-12
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	8e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-17
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-16
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-11
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	2e-16
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	7e-16
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	7e-16
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	2e-16
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	1e-12
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	3e-12
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	4e-16
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	5e-16
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	2e-12
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	8e-16
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	2e-15
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	3e-14
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-15
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-12
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	7e-07
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	2e-15
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-14
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	2e-13
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	3e-15
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	3e-15
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	4e-14
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	3e-15
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	4e-15
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	1e-13
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	4e-15
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	3e-12
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	1e-09
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	4e-15
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-12
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	5e-12
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	4e-15
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	7e-10
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	2e-09
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	5e-15
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	2e-13
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	2e-11
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-15
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-09
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-14
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-11
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-08
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	3e-14
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	2e-12
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	7e-11
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	3e-14
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	1e-13
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	3e-09
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	5e-14
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-11
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-10
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	6e-14
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	3e-10
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	1e-09
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	6e-14
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	2e-10
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	3e-08
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	6e-14
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	9e-14
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	1e-11
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	1e-13
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	4e-13
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	4e-11
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	1e-13
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	4e-13
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	6e-12
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	2e-13
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	2e-10
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	2e-09
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	2e-13
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	6e-12
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	8e-11
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	2e-13
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	3e-13
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	2e-11
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	2e-13
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	3e-11
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	1e-08
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	3e-13
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	1e-11
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	1e-11
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	4e-13
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	3e-10
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	1e-08
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	4e-13
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	7e-12
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	3e-11
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	4e-13
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	5e-12
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	7e-10
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	5e-13
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	7e-12
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	2e-08
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	7e-13
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	4e-11
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	8e-09
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	1e-12
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	2e-12
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	3e-12
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	1e-12
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	5e-12
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	2e-09
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	1e-12
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	5e-09
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	7e-09
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	1e-12
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	1e-11
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	1e-10
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-12
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-05
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-12
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-11
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-11
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	3e-12
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	3e-11
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	3e-09
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	4e-12
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	4e-11
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	9e-11
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	6e-12
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	6e-10
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	5e-08
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	7e-12
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	7e-09
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	8e-12
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	6e-09
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	1e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-12
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-06
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	1e-11
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	5e-11
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	5e-09
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	1e-11
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	6e-11
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	6e-10
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	1e-11
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	5e-08
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	2e-11
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	8e-08
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	2e-07
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	2e-11
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	5e-11
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	2e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-11
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-05
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	4e-11
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	2e-10
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	6e-08
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	6e-11
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-06
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	6e-11
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	4e-10
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	4e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-11
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-04
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	1e-10
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	1e-10
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	5e-10
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-10
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	6e-06
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	1e-10
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	5e-10
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	1e-09
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-10
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	4e-08
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	4e-04
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	2e-10
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	4e-10
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	2e-09
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	2e-10
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	4e-10
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	5e-09
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	2e-10
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	7e-09
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	1e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-10
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.003
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-10
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	4e-10
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	7e-08
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	3e-10
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	3e-10
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	1e-08
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	4e-10
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	9e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	4e-10
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	4e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-10
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-09
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	7e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-10
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	0.001
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	7e-10
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-09
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	7e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	7e-04
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	1e-09
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	2e-09
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	3e-07
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	2e-09
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	2e-09
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	5e-09
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	2e-09
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	2e-09
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	4e-09
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	2e-09
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	2e-08
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	7e-07
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	2e-09
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	5e-09
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	2e-08
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-09
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	4e-09
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	9e-09
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	5e-08
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	6e-09
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	7e-09
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	7e-09
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	7e-09
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	5e-08
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	3e-07
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	7e-09
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	2e-08
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	6e-07
d1erna2	105	b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor	8e-09
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	9e-09
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-08
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.003
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	8e-05
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	3e-08
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	3e-07
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	1e-06
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	4e-08
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	3e-07
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	2e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	9e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	0.002
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	5e-08
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	2e-07
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	1e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-08
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	8e-08
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	9e-08
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	2e-05
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	4e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-04
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-07
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-07
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-06
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-06
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	4e-07
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	0.001
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	6e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	1e-06
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-06
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	8e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.001
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	9e-05
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	3e-06
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	2e-05
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	3e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-06
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	0.002
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	4e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	5e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	5e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.003
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	3e-05
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	5e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	1e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	0.003
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.001
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.001
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.002
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	0.002
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.004

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-25
 Identities = 26/201 (12%), Positives = 51/201 (25%), Gaps = 14/201 (6%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P  P+ P      +     L W PP    G  +THY+V     +    +     C     
Sbjct: 3   PSVPLDP-ISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDYCLKGL- 59

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK----AKSPYDKPSPPGIPVVTQVGGD 204
                   + +     + +           +  +     K+              +   D
Sbjct: 60  ----KLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFED 115

Query: 205 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV 264
           +++     P      R  G   +      +   R    +     + I  L     Y   +
Sbjct: 116 YLHNVVFVPRPSRKRRSLGDVGNAGN---NEEHRPFEKVVNKESLVISGLRHFTGYRIEL 172

Query: 265 YAQNEAGLSLPSSASNSVQIK 285
            A N+       S +  V  +
Sbjct: 173 QACNQDTPEERCSVAAYVSAR 193

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 5e-10
 Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 5/94 (5%)

Query: 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
            P  P  P         + L W+ P    G NIT+Y+V        S +           
Sbjct: 2   NPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFE----LDYCL 56

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                P   +     +E+    +           
Sbjct: 57  KGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGEC 90

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 5e-10
 Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 7/110 (6%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
            PS P  P+        + L W  P D  G  I  Y +       D+             
Sbjct: 2   NPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELD------Y 54

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVP 298
                 +  R +     +++    +      ++ +        +  +   
Sbjct: 55  CLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKEL 104

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 9e-10
 Identities = 20/165 (12%), Positives = 40/165 (24%), Gaps = 5/165 (3%)

Query: 411 PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILT-IRDASNVDTAPYRVVAENDLGM 469
             T Y    + W R  E  E     +     +    T      + D+  +      D   
Sbjct: 32  NITHY---LVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAG 88

Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI 529
           +        S      +  +      D L  V   P           +     +      
Sbjct: 89  ECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNE-EHRP 147

Query: 530 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                   ++ I+GL     Y   + A N     +  + +  ++ 
Sbjct: 148 FEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSA 192

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 3e-09
 Identities = 8/114 (7%), Positives = 24/114 (21%), Gaps = 2/114 (1%)

Query: 71  SNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRD 130
                +                +      +  +         P+     +    V    +
Sbjct: 82  EYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGN 141

Query: 131 ISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
                        +  + ++ GL     Y   + A N++           + A+
Sbjct: 142 NEEHRPFE--KVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSAR 193

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.7 bits (211), Expect = 6e-21
 Identities = 27/97 (27%), Positives = 37/97 (38%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
            S P    V  V      L W  P   G   I GY ++    GS+ W   N         
Sbjct: 2   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 61

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 286
            + +L  G +  FRV   N AG S P++    V I++
Sbjct: 62  TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRE 98

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.8 bits (206), Expect = 3e-20
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA- 540
              PQ  TVED+   +  L WR P   G   I  Y+VE        W+            
Sbjct: 2   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 61

Query: 541 -ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            +  L  G +  FRV   N+ GRS+P+T    +T 
Sbjct: 62  TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI 96

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.7 bits (198), Expect = 4e-19
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTT 147
              P   L V ++T  T TL W PP   G   +  Y+VE        W+           
Sbjct: 2   TSAP-QHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 60

Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
           F V+ L  G   LF V+ VN  G   P   + P+  +
Sbjct: 61  FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 97

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 2e-20
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           SSGS    + +  + LPGPP  P  V+++TK++ TL W P          + +       
Sbjct: 2   SSGSSGKNYDL--SDLPGPPSKP-QVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSV 58

Query: 133 MPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 192
              W  ++     T + V+GL     YLF V A+N  G+  P    +P++      + S 
Sbjct: 59  SNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT-----QDSG 113

Query: 193 P 193
           P
Sbjct: 114 P 114

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 7e-20
 Identities = 35/106 (33%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 470 DSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI 529
            S+     +SD P PP  P V D+  +S+ L W+             I    +   +SW 
Sbjct: 4   GSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQ 63

Query: 530 RVGNTRFTT-MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            V N   TT   + GL P   Y F V A N  G SDPS  SD + T
Sbjct: 64  TVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT 109

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (187), Expect = 2e-17
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 1/99 (1%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
           D P PP  P VT V  + V LSW +P   G      Y I+          +        +
Sbjct: 14  DLPGPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTT 72

Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 286
              +  L     Y F V A N  GLS PS  S+ V+ +D
Sbjct: 73  LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.9 bits (204), Expect = 8e-20
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW----IRVGNTRFT 537
           P+ P  PT+      S+ + W     +GG  I ++ VE ++                   
Sbjct: 11  PEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 69

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
           ++ ITGL  G  Y+FRV A N+ G S+PS  S      G
Sbjct: 70  SVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 108

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.4 bits (195), Expect = 1e-18
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 187 YDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP 246
              P  P  P ++      V ++W  P  +GG  IQ + ++  ++       +  +   P
Sbjct: 8   LSPPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPP 66

Query: 247 SQ--INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
           S+  + I  L +G  Y+FRV A N  G S PS+ S    + 
Sbjct: 67  SRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.4 bits (182), Expect = 7e-17
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW---ICISTTCHD 145
           P  P     +S  ++ +  + W P   +GG  +  + VE + +           +     
Sbjct: 11  PEAP-DRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR 68

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
            +  + GL +G  Y F V A+N  G   P     P    
Sbjct: 69  LSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 4e-19
 Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKH 229
           G G P     PI  ++  D P PP   +  +V    V L W  P    G  +      + 
Sbjct: 3   GDGSPSH--PPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRL 60

Query: 230 EVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
              +     V V   +  Q     L     Y FR+ AQ   G    + A  
Sbjct: 61  NTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALV 111

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 1e-15
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTM 539
           D P PP      ++   S+ L+W+ P    G  +   I  +     ++   V     +  
Sbjct: 19  DVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSAR 78

Query: 540 A--ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
               TGL P   Y FR+ A+   G  + +    + T
Sbjct: 79  QYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 114

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 2e-15
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC-HDTT 147
           PGPP+G +   E+   +  L W PP    G+ + + +  R + +  +   +         
Sbjct: 21  PGPPMG-ILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQ 79

Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
           +   GL     YLF + A    G G   E + 
Sbjct: 80  YTATGLKPESVYLFRITAQTRKGWGEAAEALV 111

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 5e-19
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 474 VKIQISDRPDPPQFPTVE--DIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV 531
             +++   P  P+ P      +   ++ L W  P +DG S +  YI+E  E+     + +
Sbjct: 3   AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLL 61

Query: 532 GNTRFTTMAIT--GLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            +      ++T  GL P   Y+FR+ A N  G+   S  ++ ++ 
Sbjct: 62  ASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL 106

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 3e-18
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 80  TFTINITGLPGPPIGP-LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC 138
           +  + +  LP  P  P   +S + +    L W  P +DG   +  Y++E  + + P  + 
Sbjct: 2   SAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVL 60

Query: 139 ISTTCHDTT-FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI 181
           +++     T   V+GL   + Y F + AVN+ G G   +    +
Sbjct: 61  LASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 104

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 6e-18
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 188 DKPSPPGIPVVT--QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
             P  P  PV T   V    +NL+W KP  DG S +  Y ++  E  +     +      
Sbjct: 9   QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPK 67

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 286
            + + +  L+  R Y+FR+ A N+ G    S  +  V + +
Sbjct: 68  ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 108

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 6e-19
 Identities = 26/135 (19%), Positives = 38/135 (28%), Gaps = 12/135 (8%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGG--------LKVTHY 124
           SSGS     T     L          S+I   T  L W+PP              ++  Y
Sbjct: 2   SSGSSGDEETKAFEALLSNI-VKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGY 60

Query: 125 VVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
            V                  +T   +  L    +Y   V A   +  G P E        
Sbjct: 61  EVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSE---AEIFT 117

Query: 185 SPYDKPSPPGIPVVT 199
           +   +P  P  P ++
Sbjct: 118 TLSCEPDIPNPPRIS 132

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 3e-12
 Identities = 18/105 (17%), Positives = 25/105 (23%), Gaps = 9/105 (8%)

Query: 478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRF- 536
                     P   DI   ++ L W  P            V +           G     
Sbjct: 14  FEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKY 73

Query: 537 --------TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
                   T + +  L P   Y  +V AE    +  PS      T
Sbjct: 74  KSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTT 118

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 5e-12
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 8/119 (6%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN------- 240
              S    PV + +    V L+W  P            + +                   
Sbjct: 16  ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKS 75

Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD-PMAAKAPEIIVP 298
           V +   + I + +L     Y  +V A+  +    PS A     +   P     P I  P
Sbjct: 76  VYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRISGP 134

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 1e-18
 Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 482 PDPPQFPTV-EDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
           P P   P +        + L W  P+ DGGS I+ Y VE           V         
Sbjct: 2   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT 61

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
           ++ L PG  Y FR+ A N  G    S   D+ T  G
Sbjct: 62  VSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 97

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 5e-18
 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           PGP + P            L W PP  DGG  ++ Y VE   I       +     +   
Sbjct: 2   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV-YQGSEVEC 60

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA 183
            V  L  G+ Y F + A N+ G GP  E  +   A
Sbjct: 61  TVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 95

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 2e-15
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 190 PSPPGIP-VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           P P   P +  +     + L W  PL DGGS I  Y ++   +  D  + V        +
Sbjct: 2   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSE--VE 59

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
             + +L+ G+ Y FR+ A N+ G    S   +
Sbjct: 60  CTVSSLLPGKTYSFRLRAANKMGFGPFSEKCD 91

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 1e-17
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 180 PIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRV 239
           P   ++  D P P G    +++    + +SW +P +  G  + GY I   E      +  
Sbjct: 1   PQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGI-LTGYRISWEEYNRTNTRVT 59

Query: 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           +       +  +  L     Y   V A    G    S+++
Sbjct: 60  HYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 99

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 3e-14
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFT 537
           D P P    +  +I   SL + W+ P    G  +T Y +   E+  ++            
Sbjct: 9   DVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTL 67

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
              +TGL+    Y   V A    G+   S ++
Sbjct: 68  EYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 99

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 8e-14
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
            +PGP  G L  SEI   +  + W  P    G+   + +           +         
Sbjct: 9   DVPGPV-GHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTL 67

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPP 174
            + V GLT    Y   V A+   G G  
Sbjct: 68  EYRVTGLTALTTYTIEVAAMTSKGQGQV 95

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (187), Expect = 1e-17
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           PG P+ P    +I  H+  + W+PPK +GG  +  YVVE  + S  +   +  +      
Sbjct: 11  PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREH 70

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
           +   L  G  Y   V  +++ G     E    +  ++P
Sbjct: 71  LCDRLNPGCFYRLRVYCISDGGQSAVSE---SLLVQTP 105

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 1e-14
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 480 DRPDPPQFPT-VEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS-WIRVGNTRFT 537
           D+P  P  P+    I   S  + W  P  +GG+ I  Y+VE  E    + W  + +    
Sbjct: 9   DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATR 68

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
                 L+PG  Y  RVY  +  G+S  S +  + T
Sbjct: 69  EHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 104

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 188 DKPSPPGIP-VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP 246
           DKP  P  P V  ++      ++WD P D+GG+ I  Y ++  E  +     +  +    
Sbjct: 9   DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATR 68

Query: 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
            +     L  G  Y  RVY  ++ G S     S S+ ++ P
Sbjct: 69  -EHLCDRLNPGCFYRLRVYCISDGGQSAV---SESLLVQTP 105

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (186), Expect = 2e-17
 Identities = 26/94 (27%), Positives = 38/94 (40%)

Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
           +    PS P   V + V   F+ L+W  P  D       Y +   + G    +  N +  
Sbjct: 6   TTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHP 65

Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
              Q+ I NL+    Y FRV AQN+ G    S+ 
Sbjct: 66  GEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAP 99

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 5e-17
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 2/94 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH--PMSSWIRVGNTRFTTM 539
           P  P+      +    + L WR P  D   +   Y V   +            +     +
Sbjct: 11  PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 70

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            I  L P   Y FRV A+N +G  + S    + T
Sbjct: 71  TIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET 104

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 3e-15
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 88  LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI-SMPHWICISTTCHDT 146
           LP  P   +  S ++     L W  P  D       Y V           +  ++   + 
Sbjct: 10  LPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEM 68

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPP 174
              +Q L     Y+F VMA N++G G  
Sbjct: 69  QVTIQNLMPATVYIFRVMAQNKHGSGES 96

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (186), Expect = 2e-17
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
             PPG PV   +    V L W KP   GG +I  Y ++K ++ +  W + N +    ++ 
Sbjct: 3   IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 62

Query: 250 NIPNLIEGRQYEFRVYAQNEAG-LSLPSSASNSVQIKDPMAA 290
            +  L E   YEFRV A+N AG +S PS  S+++  +D + A
Sbjct: 63  TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 104

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 3e-15
 Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
            DPP  P   +I   ++ L W  P + GG  IT+YIVEKR+ P   W++   +       
Sbjct: 3   IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 62

Query: 542 T--GLSPGHQYEFRVYAENVYGR-SDPSTTSDLITT 574
           T  GL+    YEFRV A+N  G  S PS  SD IT 
Sbjct: 63  TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC 98

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 1e-14
 Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT-T 147
             PP G      IT+HT TL W  P+Y GG K+T Y+VE+RD+    W+  + +      
Sbjct: 3   IDPP-GKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 61

Query: 148 FIVQGLTEGQEYLFHVMAVNENG-MGPPLEGINPIKAKSPYD 188
           F V GLTE   Y F V+A N  G + PP E  + I  +   +
Sbjct: 62  FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVE 103

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (185), Expect = 2e-17
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW-IRVGNTRFT 537
           S  PD P  P + +   +SL L W+AP    GS I N+++E  E   +    +       
Sbjct: 8   SCEPDIPNPPRIANRTKNSLTLQWKAPSD-NGSKIQNFVLEWDEGKGNGEFCQCYMGSQK 66

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
              IT LSP    +FR+ A N YG S  S      T+
Sbjct: 67  QFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 103

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 2e-15
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P  P  P  ++  TK++ TL W  P  +G  K+ ++V+E  +       C         F
Sbjct: 11  PDIP-NPPRIANRTKNSLTLQWKAPSDNGS-KIQNFVLEWDEGKGNGEFCQCYMGSQKQF 68

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLE 176
            +  L+      F + A N+ G     E
Sbjct: 69  KITKLSPAMGCKFRLSARNDYGTSGFSE 96

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 8e-14
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
              +P  P  P +     + + L W  P D+G       ++ + + G    +     + +
Sbjct: 7   LSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSK--IQNFVLEWDEGKGNGEFCQCYMGS 64

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
             Q  I  L      +FR+ A+N+ G S  S    
Sbjct: 65  QKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVL 99

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.5 bits (182), Expect = 4e-17
 Identities = 20/87 (22%), Positives = 29/87 (33%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT 542
           D P+   V      SL L W     +       Y     E      +  G    T   +T
Sbjct: 2   DAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLT 61

Query: 543 GLSPGHQYEFRVYAENVYGRSDPSTTS 569
            L PG +Y   + A     +S P+T +
Sbjct: 62  DLVPGTEYGVGISAVMNSKQSIPATMN 88

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 1/82 (1%)

Query: 96  LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTE 155
           L V   T  +  L W+  + +       Y     +               T   +  L  
Sbjct: 7   LRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVL-VPKGIGPTTKTTLTDLVP 65

Query: 156 GQEYLFHVMAVNENGMGPPLEG 177
           G EY   + AV  +    P   
Sbjct: 66  GTEYGVGISAVMNSKQSIPATM 87

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.8 bits (136), Expect = 8e-11
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
             P    V       ++L WD    +       Y     E        V   I   ++  
Sbjct: 2   DAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYH--EVLVPKGIGPTTKTT 59

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           + +L+ G +Y   + A   +  S+P++ +
Sbjct: 60  LTDLVPGTEYGVGISAVMNSKQSIPATMN 88

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (181), Expect = 7e-17
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
           P+II    +       + +    +TG    T +W+K  ++I  S    +    +   L I
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 394
            +        Y     NK G +  +  L ++  P    PP  
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD---PPAG 99

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 2e-16
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
           P+    P          GE+V +    TG      TW +  + I+   H  VE SE  + 
Sbjct: 1   PQIIQFPE---DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK 57

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 487
           LTI  A       Y ++ EN LG   A V + + D+PDPP  
Sbjct: 58  LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 99

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 1e-11
 Identities = 21/93 (22%), Positives = 39/93 (41%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
          P    +  G++ ++     G QP+  +  K  + +Q  +  K    ++   + I   R+E
Sbjct: 7  PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQE 66

Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGPPIG 94
            G YT+ + N  GS      + +   P PP G
Sbjct: 67 HCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 99

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 2e-16
 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 2/94 (2%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTM 539
             P P            S+ + W  P+   G  I NY +   E        V +    + 
Sbjct: 9   QLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDV-DVSSHSY 66

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            I GL    +Y FRV A N +G    +    + T
Sbjct: 67  TINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 100

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 7e-16
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 181 IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
           ++ +     P P             + ++W+ P+   G  IQ Y +   E G+D  Q V+
Sbjct: 2   VETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVD 60

Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
               +     I  L +  +Y FRV A N+ G  + + 
Sbjct: 61  ---VSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTP 94

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 7e-16
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
             LPGP    L     +  + T+ W  P    G ++ +Y +   +        +      
Sbjct: 8   VQLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDV--DVSS 63

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYD 188
            ++ + GL +  EY F V+A N++G G        +  ++  D
Sbjct: 64  HSYTINGLKKYTEYSFRVVAYNKHGPGVSTP---DVAVRTLSD 103

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 2e-16
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           PG P   + +S    +T  L W+PPK   G ++  Y ++           I     D  F
Sbjct: 1   PGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHF 57

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLE 176
            V GL +G  Y+F + A N  G+G   E
Sbjct: 58  TVTGLHKGTTYIFRLAAKNRAGLGEEFE 85

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 1e-12
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           P  P   +++    +   L W  P +  G  + GY +            ++         
Sbjct: 1   PGRP-TMMISTTAMNTALLQWHPPKELPGE-LLGYRLQYCRADEARPNTIDFGKDDQH-F 57

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            +  L +G  Y FR+ A+N AGL       
Sbjct: 58  TVTGLHKGTTYIFRLAAKNRAGLGEEFEKE 87

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 3e-12
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG-NTRFTTMA 540
           P  P    +     ++  L W  P    G  +  Y ++      +    +          
Sbjct: 1   PGRPT-MMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFT 58

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           +TGL  G  Y FR+ A+N  G  +     
Sbjct: 59  VTGLHKGTTYIFRLAAKNRAGLGEEFEKE 87

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 4e-16
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-------G 532
           + P PP    + +IG  S+ L +R     G ++I+ ++VE +   +              
Sbjct: 9   ELPGPPTNLGISNIGPRSVTLQFRPGYD-GKTSISRWLVEAQVGVVGEGEEWLLIHQLSN 67

Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                +M +  L+P   Y FR+   N+ G S PS  S  I T
Sbjct: 68  EPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 109

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 5e-16
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 181 IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
           I +  P + P PP    ++ +G   V L +     DG + I  + ++         +   
Sbjct: 2   ISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEWL 60

Query: 241 VAICAPSQIN-----IPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQ 283
           +     ++ +     +P+L     Y FR+   N  G S PS  S  +Q
Sbjct: 61  LIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 108

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 2e-12
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC------IS 140
            LPGPP     +S I   + TL + P        ++ ++VE +   +           +S
Sbjct: 9   ELPGPPTNL-GISNIGPRSVTLQFRPGYDGKT-SISRWLVEAQVGVVGEGEEWLLIHQLS 66

Query: 141 TTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
                 +  V  L     Y F +  VN  G  PP +    I+
Sbjct: 67  NEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 108

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 8e-16
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
             P      +      + + +L W  P+   G  +  Y ++  +         +     T
Sbjct: 2   AAPSQV-VVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTT 59

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPP 174
              V GL  G  Y+F V A    G G  
Sbjct: 60  RATVSGLKPGTRYVFQVRARTSAGCGRF 87

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 2e-15
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW-IRVGNTRFTTMA 540
           P        E  G  S++L+W+ P    G  I  Y ++  E               T   
Sbjct: 4   PSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRAT 62

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           ++GL PG +Y F+V A    G    S   ++ T
Sbjct: 63  VSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET 95

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 3e-14
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           PS   +    + G   V+L W +P    G  I  Y I  +E   +      +     ++ 
Sbjct: 4   PSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLK-AVTTRA 61

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
            +  L  G +Y F+V A+  AG    S A  
Sbjct: 62  TVSGLKPGTRYVFQVRARTSAGCGRFSQAME 92

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 292 APEIIVPLRNANAIQN----HNAQFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGD 346
           AP      +    +      +  +F+C   G P PT+ WLK  +E     R   +     
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 347 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
            ++LI+ SV   D   Y C   N+ G  +    L ++
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 2e-12
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 385 APKFNVPPRFRDTAY-FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET-SER 442
           AP +    +     +       V  + P  G P P + W ++ +  +            +
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 443 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           H  L +      D   Y  V EN+ G  +    + +
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 7e-07
 Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 7  IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFK-FTVLDDYIIIFIKEIRKEDAGD 65
          +P  +  K +    G+    +   KNG+  + + R   + V + +  + ++ +   D G+
Sbjct: 17 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 76

Query: 66 YTVNLSNSSGSVSGTFTINI 85
          YT  + N  GS++ T+ +++
Sbjct: 77 YTCVVENEYGSINHTYHLDV 96

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 2e-15
 Identities = 30/126 (23%), Positives = 43/126 (34%), Gaps = 3/126 (2%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGG-LKVTHYVVERRDI 131
           SSGS SG     +  +P PP   L++++    +  L W P   +   +       E    
Sbjct: 2   SSGS-SGPTPAPVYDVPNPP-FDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMH 59

Query: 132 SMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
               W   +      T     L+    Y F VMAVN  G   P E       K+     +
Sbjct: 60  KPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKN 119

Query: 192 PPGIPV 197
           P   P 
Sbjct: 120 PTSGPS 125

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 4e-14
 Identities = 27/106 (25%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 471 SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR 530
           S      + D P+PP    + D    S+ L W     +        I  +          
Sbjct: 6   SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWH 65

Query: 531 VGNTRF--TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                    T A   LSP   Y FRV A N  G+S PS  S+   T
Sbjct: 66  HQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT 111

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 2e-13
 Identities = 29/109 (26%), Positives = 36/109 (33%)

Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
             YD P+PP    +T      V LSW    D+     +     +  +           + 
Sbjct: 12  PVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVS 71

Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAP 293
                   NL     Y FRV A N  G SLPS AS     K     K P
Sbjct: 72  GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNP 120

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 3e-15
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
           P  P     E     S+ L W  P  D    I NY +  ++       R+     T+  +
Sbjct: 11  PGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIEPGTSYRL 67

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            GL P   Y FR+ A +  G    +      T
Sbjct: 68  QGLKPNSLYYFRLAARSPQGLGASTAEISART 99

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 3e-15
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
           TG+PG P+        ++ +  L W PP+ D    + +Y +  +D        I+     
Sbjct: 8   TGVPGQPLN-FKAEPESETSILLSWTPPRSDT---IANYELVYKDGEHGEEQRITIEP-G 62

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
           T++ +QGL     Y F + A +  G+G  
Sbjct: 63  TSYRLQGLKPNSLYYFRLAARSPQGLGAS 91

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 4e-14
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 181 IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVN 240
           I+  +    P  P            + LSW  P  D    I  Y +   +      QR+ 
Sbjct: 2   IQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDT---IANYELVYKDGEHGEEQRIT 58

Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
           +     +   +  L     Y FR+ A++  GL   ++
Sbjct: 59  IEPG--TSYRLQGLKPNSLYYFRLAARSPQGLGASTA 93

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 3e-15
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P  P     +++      +L W+ P      +   Y++E  + +  +         D  +
Sbjct: 1   PSMP-ASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAY 59

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPI 181
            V+ L    +Y F V+A N  G   P E +   
Sbjct: 60  TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFT 92

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (167), Expect = 4e-15
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA- 540
           P  P  P +   G   L+L W  P         +YI+E  E       +           
Sbjct: 1   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYT 60

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           +  L    +Y+F+V A N  G+S+PS   +  T
Sbjct: 61  VKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 93

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 1e-13
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 1/97 (1%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           PS P  PV+T+ G  +++L W KP          Y ++  E  S    +           
Sbjct: 1   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKY-DGEDLAY 59

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 286
            + NL    +Y+F+V A N  G S PS         D
Sbjct: 60  TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPD 96

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.7 bits (167), Expect = 4e-15
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT 542
           D P+   V D    +L+L WR P+    +    Y +                  T+  + 
Sbjct: 1   DNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIPVDSTSFILR 56

Query: 543 GLSPGHQYEFRVYAENVYGRSDPSTTS 569
           GL  G +Y   + AE    +S P+T  
Sbjct: 57  GLDAGTEYTISLVAEKGRHKSKPTTIK 83

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.3 bits (145), Expect = 3e-12
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 96  LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTE 155
           L+VS+ T+ T +L W  P          Y +     S      +      T+FI++GL  
Sbjct: 6   LEVSDPTETTLSLRWRRPVAK----FDRYRLTYVSPSGKKN-EMEIPVDSTSFILRGLDA 60

Query: 156 GQEYLFHVMAVNENGMGPPLEG 177
           G EY   ++A        P   
Sbjct: 61  GTEYTISLVAEKGRHKSKPTTI 82

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 6/88 (6%)

Query: 192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINI 251
            P    V+      ++L W +P+                V     +         +   +
Sbjct: 2   NPKDLEVSDPTETTLSLRWRRPVAKFDRYRL------TYVSPSGKKNEMEIPVDSTSFIL 55

Query: 252 PNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
             L  G +Y   + A+     S P++  
Sbjct: 56  RGLDAGTEYTISLVAEKGRHKSKPTTIK 83

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 4e-15
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 2/87 (2%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT 542
           D P+     D+  DS+ + W +P          Y   +           G        + 
Sbjct: 3   DRPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAE--LQ 60

Query: 543 GLSPGHQYEFRVYAENVYGRSDPSTTS 569
           GL PG +Y   V A +    S P   +
Sbjct: 61  GLRPGSEYTVSVVALHDDMESQPLIGT 87

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 1e-12
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 96  LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTE 155
           L  +++   +  + W  P+         Y          H +  +    + T  +QGL  
Sbjct: 8   LAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDG---IHELFPAPDGEEDTAELQGLRP 64

Query: 156 GQEYLFHVMAVNENGMGPPLEG 177
           G EY   V+A++++    PL G
Sbjct: 65  GSEYTVSVVALHDDMESQPLIG 86

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 5e-12
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 4/89 (4%)

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
             P     T V  D + ++W+ P          Y   +        +             
Sbjct: 3   DRPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPED----GIHELFPAPDGEEDTAE 58

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           +  L  G +Y   V A ++   S P   +
Sbjct: 59  LQGLRPGSEYTVSVVALHDDMESQPLIGT 87

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.8 bits (167), Expect = 4e-15
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT 542
           D P+   V      S++L+W          I +Y +        S         T+  +T
Sbjct: 2   DSPRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEVTVPRDRTSYTLT 57

Query: 543 GLSPGHQYEFRVYAENVYGRSDPSTTS 569
            L PG +Y   + AE    +S  ST  
Sbjct: 58  DLEPGAEYIISITAERGRQQSLESTVD 84

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.7 bits (128), Expect = 7e-10
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIV 150
            P   L V+  ++ + +L W          + HY +     S      ++     T++ +
Sbjct: 3   SPRD-LMVTASSETSISLIWTKASGP----IDHYRITFTP-SSGISSEVTVPRDRTSYTL 56

Query: 151 QGLTEGQEYLFHVMAVNENGMGPP 174
             L  G EY+  + A         
Sbjct: 57  TDLEPGAEYIISITAERGRQQSLE 80

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 6/89 (6%)

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
             P   +VT      ++L W K           +              V V     S   
Sbjct: 2   DSPRDLMVTASSETSISLIWTKASGPIDHYRITFTPSSGI-----SSEVTVPRDRTS-YT 55

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           + +L  G +Y   + A+     SL S+  
Sbjct: 56  LTDLEPGAEYIISITAERGRQQSLESTVD 84

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 5e-15
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMA 540
           D P          +SL + W+ P       IT YI++  +        V       T   
Sbjct: 2   DAPSNLRFLATTPNSLLVSWQPPRAR----ITGYIIKYEKPGSPPREVVPRPRPGVTEAT 57

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           ITGL PG +Y   V A     +S+P    
Sbjct: 58  ITGLEPGTEYTIYVIALKNNQKSEPLIGR 86

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 2e-13
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 96  LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW-ICISTTCHDTTFIVQGLT 154
           L     T ++  + W PP+      +T Y+++      P   +        T   + GL 
Sbjct: 7   LRFLATTPNSLLVSWQPPRAR----ITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLE 62

Query: 155 EGQEYLFHVMAVNENGMGPPLEG 177
            G EY  +V+A+  N    PL G
Sbjct: 63  PGTEYTIYVIALKNNQKSEPLIG 85

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 2e-11
 Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 4/91 (4%)

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
             P          + + +SW  P       I GY I   + GS   + V       ++  
Sbjct: 2   DAPSNLRFLATTPNSLLVSWQPPRAR----ITGYIIKYEKPGSPPREVVPRPRPGVTEAT 57

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
           I  L  G +Y   V A      S P      
Sbjct: 58  ITGLEPGTEYTIYVIALKNNQKSEPLIGRKK 88

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 6e-15
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 289 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH-IFAEGDT 347
           + +AP+I   +++    Q  +A F+  + G P P   W K   +I  S R +  + E + 
Sbjct: 1   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 60

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
             L+I  V G D+   + +A+N  G  S+ A L++
Sbjct: 61  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 4e-09
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 383 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 442
           M APK     +   +    +G +   ++   G P P+  WY++   IE     +    E 
Sbjct: 2   MEAPKIFERIQ---SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED 58

Query: 443 H-AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
           +   L IRD +  D+A   V A N  G  S+   + +  +
Sbjct: 59  NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFI-KEIRK 60
            +  + +G +   ++   G    E    KNG  ++  DR  +   +D +   + +++  
Sbjct: 11 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 70

Query: 61 EDAGDYTVNLSNSSGSVSGTFTINITG 87
          ED+    V   N +G  S    + +  
Sbjct: 71 EDSASIMVKAINIAGETSSHAFLLVQA 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 66.8 bits (162), Expect = 2e-14
 Identities = 28/94 (29%), Positives = 38/94 (40%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
           P  IV        +  +A F C +     P ++W K  RE+  S ++     G+ Y L I
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
           N V G D  EY  RA N  G K     L +    
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.0 bits (139), Expect = 3e-11
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
           P+F V P         +G++            P +TW++D+  ++    +    +     
Sbjct: 2   PRFIVKPY---GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 58

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDP 484
           LTI      D   Y V A+N  G    IV + ++   +P
Sbjct: 59  LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
          P    + EG +           P  V+  K+ R ++   ++      +   + I  ++ +
Sbjct: 8  PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGD 67

Query: 62 DAGDYTVNLSNSSGSVSGTFTINITGLPGP 91
          D G+YTV   NS G+      +N+T    P
Sbjct: 68 DKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 67.0 bits (162), Expect = 3e-14
 Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 15/105 (14%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW--------------I 529
           PP  P V  +  +S+ L W     + G  I  + V+ R                      
Sbjct: 2   PPTPPNVTRLSDESVMLRWM-VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 60

Query: 530 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                +  T ++T L P H Y FR+ A      +  S TS     
Sbjct: 61  NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 105

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.6 bits (148), Expect = 2e-12
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 13/106 (12%)

Query: 192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAW------------QRV 239
           PP  P VT++  + V L W     + G  I  + +    VG                 + 
Sbjct: 2   PPTPPNVTRLSDESVMLRW-MVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 60

Query: 240 NVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
           N  +      ++ +L     Y FR+ A      +  S+ S    ++
Sbjct: 61  NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 106

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.4 bits (137), Expect = 7e-11
 Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 13/96 (13%)

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS------------MPHWIC 138
           PP  P +V+ ++  +  L W  P+ DG   V   V  R                      
Sbjct: 2   PP-TPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 60

Query: 139 ISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
            S      T  V  L     Y F ++AV  N     
Sbjct: 61  NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 96

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.4 bits (161), Expect = 3e-14
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 90  GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFI 149
           G P G +  S+IT+++ T+ W PP+      V  Y V    I+      ++     T   
Sbjct: 2   GSPKG-ISFSDITENSATVSWTPPRSR----VDSYRVSYVPITGGTPNVVTVDGSKTRTK 56

Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEG 177
           +  L  G +Y  ++++V       P+ G
Sbjct: 57  LVKLVPGVDYNVNIISVKGFEESEPISG 84

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.9 bits (157), Expect = 1e-13
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITG 543
            P+  +  DI  +S  + W  P     S   +Y+      P    +    TR     +  
Sbjct: 3   SPKGISFSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTK---LVK 59

Query: 544 LSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           L PG  Y   + +   +  S+P +    + T
Sbjct: 60  LVPGVDYNVNIISVKGFEESEPISGI--LKT 88

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINI 251
            P     + +  +   +SW  P      R+  Y +    +       V V   + ++  +
Sbjct: 3   SPKGISFSDITENSATVSWTPPRS----RVDSYRVSYVPITGGTPNVVTVD-GSKTRTKL 57

Query: 252 PNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
             L+ G  Y   + +      S P S  
Sbjct: 58  VKLVPGVDYNVNIISVKGFEESEPISGI 85

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 5e-14
 Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 12/115 (10%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNP-PKYDGGLKVTHYVVERRDISMPHWI--------CI 139
           P    G + V+ +      +HW+P P       +  Y +                    +
Sbjct: 14  PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKIL 73

Query: 140 STTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
           +     T  ++ GL     Y  +V  VN  G GP           +P       G
Sbjct: 74  TFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASP---DRVFNTPEGSGPSSG 125

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 1e-11
 Identities = 19/105 (18%), Positives = 27/105 (25%), Gaps = 10/105 (9%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRA-PIWDGGSNITNYIVEKREHPMSSW---------IRV 531
              P    V  +      + W   P+     ++  Y +   +   SS          I  
Sbjct: 15  MVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILT 74

Query: 532 GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
                T   + GL P   Y   V   N  G    S      T  G
Sbjct: 75  FQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 9/105 (8%)

Query: 185 SPYDKPS-PPGIPVVTQVGGDFVNLSWD-KPLDDGGSRIQGYWIDKHEVGSDAWQ----- 237
           S  D P   PG   V  V      + WD  PL      +QGY I   +  S + +     
Sbjct: 9   SGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHI 68

Query: 238 --RVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
             ++     + +   +P L     Y   V   N  G    S    
Sbjct: 69  EKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRV 113

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 6e-14
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA 540
           R D P    V+D+   +  + W  P+ +       Y ++      ++     +    ++ 
Sbjct: 1   RLDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSI- 59

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
              L P  +YE  + +      S+P+  +
Sbjct: 60  -GNLKPDTEYEVSLISRRGDMSSNPAKET 87

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 3e-10
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           +   P    V  V      ++W KPL +       Y I          +         +Q
Sbjct: 1   RLDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTYGI----KDVPGDRTTIDLTEDENQ 56

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            +I NL    +YE  + ++     S P+  +
Sbjct: 57  YSIGNLKPDTEYEVSLISRRGDMSSNPAKET 87

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 1e-09
 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 4/89 (4%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
              P   ++V ++T  T  + W  P  +       Y              I  T  +  +
Sbjct: 2   LDAPSQ-IEVKDVTDTTALITWFKPLAEIDGIELTY---GIKDVPGDRTTIDLTEDENQY 57

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEG 177
            +  L    EY   +++   +    P + 
Sbjct: 58  SIGNLKPDTEYEVSLISRRGDMSSNPAKE 86

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 6e-14
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT 542
           + P+    +++   +  L W     +       Y++        +   +     T+  + 
Sbjct: 3   EAPRDLEAKEVTPRTALLTW----TEPPVRPAGYLLSFHTPGGQTQEILLPGGITSHQLL 58

Query: 543 GLSPGHQYEFRVYAENVYGRSDPSTTSDLITTYG 576
           GL P   Y  R+ A        P +TS   TT G
Sbjct: 59  GLFPSTSYNARLQAMWGQSLLPPVSTS--FTTGG 90

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 7/92 (7%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 146
           GL  P    L+  E+T  T  L W  P       +  +              I      T
Sbjct: 1   GLEAP--RDLEAKEVTPRTALLTWTEPPVRPAGYLLSFHTP-----GGQTQEILLPGGIT 53

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGI 178
           +  + GL     Y   + A+    + PP+   
Sbjct: 54  SHQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 85

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
             P      +V      L+W +P       +  +     +      Q + +     S   
Sbjct: 3   EAPRDLEAKEVTPRTALLTWTEPPVRPAGYLLSFHTPGGQ-----TQEILLPGGITS-HQ 56

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           +  L     Y  R+ A     L  P S S
Sbjct: 57  LLGLFPSTSYNARLQAMWGQSLLPPVSTS 85

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 6e-14
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT--RFTTMA 540
           D P      DI  +S  + W AP     + IT Y +       S   R         ++ 
Sbjct: 2   DSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPHSRNSIT 57

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           +T L+PG +Y   + A N    S      
Sbjct: 58  LTNLTPGTEYVVSIVALNGREESPLLIGQ 86

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 9e-14
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTTFI 149
            P G +D S+IT ++ T+HW  P+      +T Y +                     +  
Sbjct: 3   SPTG-IDFSDITANSFTVHWIAPRAT----ITGYRIRHHPEHFSGRPREDRVPHSRNSIT 57

Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEG 177
           +  LT G EY+  ++A+N     P L G
Sbjct: 58  LTNLTPGTEYVVSIVALNGREESPLLIG 85

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 1e-11
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
             P     + +  +   + W  P     + I GY I  H        R +    + + I 
Sbjct: 2   DSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPHSRNSIT 57

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 281
           + NL  G +Y   + A N    S       S
Sbjct: 58  LTNLTPGTEYVVSIVALNGREESPLLIGQQS 88

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 1e-13
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 8/121 (6%)

Query: 83  INITGLPGPPIGP---LDVSEITKHTCTLHWNP-PKYDGGLKVTHYVVERRDISMPHWI- 137
           + +  L   P      L +      +  +HW P        ++T Y +  R  S    + 
Sbjct: 2   VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVT 61

Query: 138 CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPV 197
               +    + +++GL  G EY F V A+  NG GP  +    + A++         +P 
Sbjct: 62  ETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATD---WLSAETFESDLDETRVPE 118

Query: 198 V 198
           V
Sbjct: 119 V 119

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 4e-13
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 3/118 (2%)

Query: 181 IKAKSPYDKPS-PPGIPVVTQVGGDFVNLSWD-KPLDDGGSRIQGYWIDKHEVGSDAWQR 238
           +  ++  D PS  P    +       + + W          +I GY I   +    +   
Sbjct: 2   VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVT 61

Query: 239 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPM-AAKAPEI 295
             +         I  L  G +Y FRV A    G    +   ++   +  +   + PE+
Sbjct: 62  ETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEV 119

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 4e-11
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 479 SDRPD-PPQFPTVEDIGHDSLALVWRA-PIWDGGSNITNYIVEKREHPMSSWIRVG--NT 534
           SD P   PQ  ++E     S+ + W+          IT Y +  R+    S +     + 
Sbjct: 8   SDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSG 67

Query: 535 RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
              +  I GL  G +Y FRV A  + G    +      T
Sbjct: 68  TQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAET 106

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 1e-13
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 7/99 (7%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWD-GGSNITNYIVEKREHPMSSWIRVGNTRF---- 536
             PP   T++ +   S+ + W+AP  +     I  Y +  RE+   S  +          
Sbjct: 9   DGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATG 68

Query: 537 --TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
                 +  L    QY   V A N  G    S+  +  T
Sbjct: 69  DSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT 107

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 4e-13
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 85  ITGLPGPPIGP---LDVSEITKHTCTLHWNPPKYD-GGLKVTHYVVERRDISMP-----H 135
           I+     P GP   + +  +T  +  + W  PK +     +  Y +  R+ S        
Sbjct: 1   ISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYS 60

Query: 136 WICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
            + +  T     + +  L +  +Y   V A N  G GP    IN
Sbjct: 61  IVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEIN 104

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 6e-12
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPL-DDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS- 247
             PP    +  V    + ++W  P  +     I+GY I   E    +  + ++     + 
Sbjct: 9   DGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATG 68

Query: 248 ---QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
                 + NL +  QY   V A N AG    SS  N
Sbjct: 69  DSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEIN 104

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 22/95 (23%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW----ICIST 141
           T LP PP    +          LHW P         T Y V      +  W     C  T
Sbjct: 2   TELPSPPSVWFE---AEFFHHILHWTPIPQQSES--TCYEVALLRYGIESWNSISQCSQT 56

Query: 142 TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLE 176
             +D T +   L     Y   V AV+ +       
Sbjct: 57  LSYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTV 91

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 9/100 (9%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTT 538
           ++ P PP      +       L W        S  T Y V    + + SW  +     T 
Sbjct: 2   TELPSPPSVWF--EAEFFHHILHWTPIPQQSES--TCYEVALLRYGIESWNSISQCSQTL 57

Query: 539 -----MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
                     L   + Y  RV A +    S  + T+   +
Sbjct: 58  SYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFS 97

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 7/95 (7%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP- 246
           + PSPP +    +       L W        S    Y +     G ++W  ++       
Sbjct: 3   ELPSPPSVWFEAE--FFHHILHWTPIPQQSESTC--YEVALLRYGIESWNSISQCSQTLS 58

Query: 247 --SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
                   +L     Y  RV A + +  S  +  +
Sbjct: 59  YDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTN 93

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.6 bits (156), Expect = 2e-13
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 8/101 (7%)

Query: 481 RPDPPQFPTVE----DIGHDSLALVWRAPI---WDGGSNITNYIVEKREHPMSSWIRVGN 533
            P+PP+  T+E          L + W  P       G     Y +  +      W     
Sbjct: 2   EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFT 61

Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGR-SDPSTTSDLIT 573
              T   +  L PG +Y  +   +  +G  S  S  S +  
Sbjct: 62  GHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVEM 102

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.4 bits (145), Expect = 6e-12
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 189 KPSPPGIPVVT----QVGGDFVNLSWDKPL---DDGGSRIQGYWIDKHEVGSDAWQRVNV 241
           +P PP    +     +    ++ + W  P       G     Y I      ++ W+    
Sbjct: 2   EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFT 61

Query: 242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQI 284
                +Q  + +L  G++Y  +   + + G     S  +SV++
Sbjct: 62  --GHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVEM 102

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.9 bits (136), Expect = 8e-11
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 89  PGPPIGP---LDVSEITKHTCTLHWNPPKY---DGGLKVTHYVVERRDISMPHWICISTT 142
           P PP      +   +  K    + W+PP       G     Y +  +         I  T
Sbjct: 3   PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEA-EEWEIHFT 61

Query: 143 CHDTTFIVQGLTEGQEYLFHVMAVNENG 170
            H T F V  L  GQ+YL       ++G
Sbjct: 62  GHQTQFKVFDLYPGQKYLVQTRCKPDHG 89

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (156), Expect = 2e-13
 Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 4/99 (4%)

Query: 89  PGPPIGPLDVSEITK--HTCTLHWNP-PKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
           P PP   + V+ + +     ++ W     ++       + +  R      +         
Sbjct: 2   PDPPAN-ITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ 60

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
              ++     G  ++  + A  E G G   E        
Sbjct: 61  HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGT 99

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 3e-13
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 481 RPDPPQFPTVEDI--GHDSLALVWRA-PIWDGGSNITNYIVEKREHPMSSWIRVGNTRFT 537
           +PDPP   TV  +      L++ W+    W+       + +  R     ++         
Sbjct: 1   QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ 60

Query: 538 TMA-ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
               I     G ++  ++ A+  +G+ + S  S     
Sbjct: 61  HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMG 98

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 189 KPSPPGIPVVTQVGG--DFVNLSWDK-PLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
           +P PP    VT V     +++++W      +       + +      S  +    V    
Sbjct: 1   QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ 60

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 282
                I +   G ++  ++ AQ E G    S  S   
Sbjct: 61  HH-CVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEA 96

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.2 bits (155), Expect = 2e-13
 Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 8/93 (8%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI-------SMPHWICIST 141
           P  P     +  +T ++    W P   +  L  +  +   R                   
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWEPG-PETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63

Query: 142 TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
             ++ +   + L   Q     V A N  G    
Sbjct: 64  RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSES 96

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (140), Expect = 3e-11
 Identities = 11/94 (11%), Positives = 22/94 (23%), Gaps = 8/94 (8%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR--------VGN 533
           P  P   +       +  +    P  +     +  +   R      +             
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64

Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST 567
               ++    L         V AEN+ G S+   
Sbjct: 65  QNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPK 98

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 190 PSPP-GIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS- 247
           P+ P  +  +  +  + +   W+ P  +                   +Q   +  C    
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWE-PGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63

Query: 248 -----QINIPNLIEGRQYEFRVYAQNEAGLSLPS 276
                 I   NL+  +     V A+N  G S   
Sbjct: 64  RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESP 97

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 3e-13
 Identities = 18/101 (17%), Positives = 26/101 (25%), Gaps = 6/101 (5%)

Query: 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW------IRVGNT 534
           +P  P   TV     D+L L W  P         +          +              
Sbjct: 1   KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 60

Query: 535 RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTY 575
               +A + L  G  Y  RV A      +  S  S     +
Sbjct: 61  PSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWH 101

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 1e-11
 Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 4/98 (4%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS- 247
           KP  PG   V     D + L+W  P               +    +      +       
Sbjct: 1   KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 60

Query: 248 ---QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 282
              +I    L  G  Y  RV A  +A  +  S  S S 
Sbjct: 61  PSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPST 98

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 18/99 (18%), Positives = 22/99 (22%), Gaps = 6/99 (6%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW-----ICISTTC 143
           P  P G L V      T  L W+ P         H        S           ++   
Sbjct: 2   PRAP-GNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 60

Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIK 182
                    L  G  Y   V A  +       E     K
Sbjct: 61  PSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTK 99

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.4 bits (153), Expect = 4e-13
 Identities = 15/103 (14%), Positives = 30/103 (29%)

Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
           P    +    P V       + LSW           +     + ++    W  V     +
Sbjct: 4   PPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSS 63

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPM 288
             Q  +  L +   Y  ++     +     S  S  +Q++  M
Sbjct: 64  KDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTM 106

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 2/101 (1%)

Query: 87  GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDI-SMPHWICISTTCHD 145
            L    IGP DV         L W P K    ++    +  +  +      +        
Sbjct: 6   MLQALDIGP-DVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSK 64

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
             F + GL +   Y   +  +  +  G        ++ +  
Sbjct: 65  DQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPT 105

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 11/95 (11%), Positives = 22/95 (23%), Gaps = 2/95 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR--VGNTRFTTM 539
                 P V       L L W+             +  + +   ++W       +     
Sbjct: 8   QALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQF 67

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            + GL     Y  ++           S  S  +  
Sbjct: 68  ELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQL 102

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 63.5 bits (153), Expect = 4e-13
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRF--- 536
           D P+ P+   +     D   + W     +  S I +Y ++       +       +    
Sbjct: 4   DVPNAPKLTGITC-QADKAEIHWEQQGDNR-SPILHYTIQFNTSFTPASWDAAYEKVPNT 61

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            +  +  +SP   Y FRV A N  G S PS  SD  TT
Sbjct: 62  DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTT 99

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 60.0 bits (144), Expect = 7e-12
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
           D P+ P +  +T    D   + W++   D  S I  Y I  +   + A           +
Sbjct: 4   DVPNAPKLTGIT-CQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61

Query: 248 Q-INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
               +  +     Y FRV A N+ G S PS+ S+S   +
Sbjct: 62  DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 58.1 bits (139), Expect = 3e-11
 Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 3/97 (3%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCH-DTT 147
           P  P               +HW     +    + + +      +   W           +
Sbjct: 6   PNAPKLT--GITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63

Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
             V  ++    Y F V+A N+ G  PP    +    +
Sbjct: 64  SFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 4e-13
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 481 RPDPPQFPTVEDI--GHDSLALVWRAPIW--DGGSNITNYIVEKREHPMSSWIRVGNTRF 536
           +PDPP+      +      L + W+ P    D  S    + +  R   +  W  V  +  
Sbjct: 7   KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNG 66

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           T   IT    G +Y  +V A++       S  S    
Sbjct: 67  TAHTITDAYAGKEYIIQVAAKDNEI-GTWSDWSVAAH 102

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 5e-12
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 189 KPSPPGIPVVTQVGG--DFVNLSWDKP--LDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
           KP PP   V   V      + ++W  P    D  S    +++    +  D WQ V   + 
Sbjct: 7   KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVE--LS 64

Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
             +   I +   G++Y  +V A++   +   S  S +    
Sbjct: 65  NGTAHTITDAYAGKEYIIQVAAKDN-EIGTWSDWSVAAHAT 104

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 7e-10
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 89  PGPPIGP-LDVSEITKHTCTLHWNPPK--YDGGLKVTHYVVERRDISMPHWICISTTCHD 145
           P PP                + W  P    D       + +  R + +  W  +    + 
Sbjct: 8   PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHV-ELSNG 66

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
           T   +     G+EY+  V A + N +G   +      A 
Sbjct: 67  TAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHAT 104

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.9 bits (154), Expect = 5e-13
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 9/125 (7%)

Query: 73  SSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 132
           SSGS SG     +      P  P  V ++T H+  L+W+  + +         +      
Sbjct: 2   SSGS-SGMEPHKVV-PLSKP-HPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEE 58

Query: 133 MPHWICISTTC---HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDK 189
               +         + T  +V+GL     Y F +   + +G          +   +  + 
Sbjct: 59  EDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSP---VVSVATTRES 115

Query: 190 PSPPG 194
               G
Sbjct: 116 GPSSG 120

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 7e-12
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE----KREHPMSSWIRVGNTRFT 537
              P  P V  + H S+ L W     +         +     + +  M S+  +     T
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYAT 75

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
              + GL P   Y+FR+   +  G  + S    + TT
Sbjct: 76  RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATT 112

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 2/100 (2%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGS--DAWQRVNVAICAPS 247
            S P  PVV +V    + L WD    +     Q  W+                +     +
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYAT 75

Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
           +  +  L     Y+FR+   + +G    S   +    ++ 
Sbjct: 76  RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 7e-13
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW-----ICIS 140
           +G   P +  L V+++T  +  L+W  P       +  + V       PH        + 
Sbjct: 1   SGSR-PRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELM 59

Query: 141 TTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEG 177
                 + +++ L  G  Y   +  +        ++G
Sbjct: 60  VPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQG 96

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 4e-11
 Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 6/97 (6%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM------SSWIRVG 532
           S         +V D+   SL L W AP     S +  + V                  + 
Sbjct: 1   SGSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMV 60

Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
                +  +  L  G  Y   +Y      ++D    +
Sbjct: 61  PGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 97

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 8e-09
 Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 4/94 (4%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDK----HEVGSDAWQRVNVAICA 245
                   VT V    + L+W+ P     S +  + +              QR  +    
Sbjct: 4   RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 63

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
                + +L  G  Y   +Y       +     +
Sbjct: 64  RHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 97

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 3/92 (3%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFT--TMAI 541
            P   T+E   + +  + W   I       T  +               N       ++ 
Sbjct: 3   TPTNVTIESY-NMNPIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISD 61

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
               P +    RV A      S  + + +   
Sbjct: 62  HVGDPSNSLWVRVKARVGQKESAYAKSEEFAV 93

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 2e-12
 Identities = 9/96 (9%), Positives = 22/96 (22%), Gaps = 1/96 (1%)

Query: 192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINI 251
            P    +     + + + W+  +            +     S+              I+ 
Sbjct: 3   TPTNVTIESYNMNPI-VYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISD 61

Query: 252 PNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
                      RV A+     S  + +      +D 
Sbjct: 62  HVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDG 97

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 3e-12
 Identities = 7/95 (7%), Positives = 15/95 (15%), Gaps = 2/95 (2%)

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT-TFI 149
           P    + +     +   ++W           T  V      +           H      
Sbjct: 2   PTPTNVTIESYNMN-PIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNIS 60

Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
                        V A          +       +
Sbjct: 61  DHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCR 95

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 1e-12
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITG 543
            P       +   SL+  W  P             +++  PM       ++  +++ ++G
Sbjct: 2   APTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDS--SSVVVSG 59

Query: 544 LSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           L    +YE  VYA      S P+     +TT
Sbjct: 60  LMVATKYEVSVYALKDTLTSRPAQGV--VTT 88

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 5e-12
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIV 150
           P    L  +++T  + +  W PP             + +         I+     ++ +V
Sbjct: 1   PAPTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKT---GPMKEINLAPDSSSVVV 57

Query: 151 QGLTEGQEYLFHVMAVNENGMGPPLEGI 178
            GL    +Y   V A+ +     P +G+
Sbjct: 58  SGLMVATKYEVSVYALKDTLTSRPAQGV 85

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 2e-09
 Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 4/88 (4%)

Query: 192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINI 251
            P     TQV    ++  W  P              +         +        S + +
Sbjct: 2   APTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEK----TGPMKEINLAPDSSSVVV 57

Query: 252 PNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
             L+   +YE  VYA  +   S P+   
Sbjct: 58  SGLMVATKYEVSVYALKDTLTSRPAQGV 85

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 1e-12
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 3/108 (2%)

Query: 89  PGPPIGP-LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIS--TTCHD 145
           P PP    +  SE       L W  P     + + + +  R   +          T    
Sbjct: 5   PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 64

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
           ++F VQ L    EY+F +  + E+G G   +        +  D+PS  
Sbjct: 65  SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKE 112

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 5e-09
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 481 RPDPPQFPTVE--DIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTR 535
           +P+PP   +V   +     L L W  P       +   I  + +   +          + 
Sbjct: 4   KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAST 63

Query: 536 FTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
            ++  +  L P  +Y FR+      G+   S  S+  + 
Sbjct: 64  RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 102

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 7e-09
 Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 5/111 (4%)

Query: 189 KPSPPGIPVVTQVGG--DFVNLSWDKPLDDGGS-RIQGYWIDKHEVGSDAWQRVNVAICA 245
           KP+PP    V         + L+W  P                 +  + +          
Sbjct: 4   KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAST 63

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA--KAPE 294
            S   + +L    +Y FR+    E G    S  S             K P 
Sbjct: 64  RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 114

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 1e-12
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTTFI 149
           PP   L  + I   T  + W PP       +T+++V    +     +  +S +  D   +
Sbjct: 2   PPPTDLRFTNIGPDTMRVTWAPPPSI---DLTNFLVRYSPVKNEEDVAELSISPSDNAVV 58

Query: 150 VQGLTEGQEYLFHVMAVNENGMGPPLEG 177
           +  L  G EY+  V +V E     PL G
Sbjct: 59  LTNLLPGTEYVVSVSSVYEQHESTPLRG 86

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 1e-11
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA--I 541
           PP      +IG D++ + W  P      ++TN++V          +   +   +  A  +
Sbjct: 3   PPTDLRFTNIGPDTMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVL 59

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           T L PG +Y   V +      S P    
Sbjct: 60  TNLLPGTEYVVSVSSVYEQHESTPLRGR 87

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 1e-10
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINI 251
           PP     T +G D + ++W  P       +  + +    V ++          + + + +
Sbjct: 3   PPTDLRFTNIGPDTMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVL 59

Query: 252 PNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            NL+ G +Y   V +  E   S P    
Sbjct: 60  TNLLPGTEYVVSVSSVYEQHESTPLRGR 87

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
            P     + +   ++   A+F C + G P P + W K    +  S    I  + +    +
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 352 IN-SVYGVDADEYVCRAVNKGGVKSTKAELIIMT 384
               V G D  +Y C+AVN  G  +  AEL++ T
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 378 AELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV 437
           AE      P F             +G          GYP P++ W++D+  ++   HF +
Sbjct: 1   AEEKPHVKPYFTKTIL---DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI 57

Query: 438 ETSER-HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           +  E  +  LTI +    D A Y   A N LG  +   ++ +
Sbjct: 58  DYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFI-KEIRK 60
             + + EG   +      G    EV   K+   V+    F+    ++        E+  
Sbjct: 15 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG 74

Query: 61 EDAGDYTVNLSNSSGSVSGTFTINI 85
          +D   YT    NS G  + T  + +
Sbjct: 75 DDDAKYTCKAVNSLGEATCTAELLV 99

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 3e-12
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 96  LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTCHDTTFIVQGLT 154
           L+V   T  +  + W+ P       V +Y +   +      +   +     +T  + GL 
Sbjct: 3   LEVVAATPTSLLISWDAPAVT----VRYYRITYGETGGNSPVQEFTVPGSKSTATISGLK 58

Query: 155 EGQEYLFHVMAVNENGMGPP 174
            G +Y   V AV   G  P 
Sbjct: 59  PGVDYTITVYAVTGRGDSPA 78

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 198 VTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEG 257
           V       + +SWD P       ++ Y I   E G ++  +      + S   I  L  G
Sbjct: 5   VVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPG 60

Query: 258 RQYEFRVYAQNEAGLSLPSSASNSVQIK 285
             Y   VYA    G S  SS   S+  +
Sbjct: 61  VDYTITVYAVTGRGDSPASSKPISINYR 88

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 2e-11
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 489 TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT--RFTTMAITGLSP 546
            V      SL + W AP       +  Y +   E   +S ++        +T  I+GL P
Sbjct: 4   EVVAATPTSLLISWDAPAV----TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKP 59

Query: 547 GHQYEFRVYAENVYGRSDPSTTSDLITTYGEL 578
           G  Y   VYA    G S  S+    I    E+
Sbjct: 60  GVDYTITVYAVTGRGDSPASSKPISINYRTEI 91

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 3e-12
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT 542
            PP+   V D    ++ + WR           + +    + P+   I+     +T     
Sbjct: 3   SPPRRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTIT--- 59

Query: 543 GLSPGHQYEFRVYAENVYGRSDPSTTS 569
           GL PG  Y+  +Y  N   RS P    
Sbjct: 60  GLQPGTDYKIYLYTLNDNARSSPVVID 86

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 3e-11
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 91  PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIV 150
            P     V++ T+ T T+ W          +T + V+    +    I  +      ++ +
Sbjct: 3   SPPRRARVTDATETTITISWRTKTET----ITGFQVDAVPANGQTPIQRTIKPDVRSYTI 58

Query: 151 QGLTEGQEYLFHVMAVNENGMGPPLE 176
            GL  G +Y  ++  +N+N    P+ 
Sbjct: 59  TGLQPGTDYKIYLYTLNDNARSSPVV 84

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 3e-09
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
           SPP    VT      + +SW    +     I G+ +D          +  +     S   
Sbjct: 3   SPPRRARVTDATETTITISWRTKTET----ITGFQVDAVPANGQTPIQRTIKPDVRS-YT 57

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           I  L  G  Y+  +Y  N+   S P    
Sbjct: 58  ITGLQPGTDYKIYLYTLNDNARSSPVVID 86

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 4e-12
 Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 5/98 (5%)

Query: 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV----GNTRF 536
           R   P    V  +      + W                 +   P  +W          + 
Sbjct: 2   RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ 61

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGR-SDPSTTSDLIT 573
             + +  L+P  QYEF+V  + + G  +  S  S  + 
Sbjct: 62  EWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLA 99

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 4e-11
 Identities = 16/102 (15%), Positives = 26/102 (25%), Gaps = 5/102 (4%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCH---D 145
              PI  L V  +  H C + W   +     +       R       W            
Sbjct: 3   LMAPIS-LQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ 61

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENG-MGPPLEGINPIKAKSP 186
               ++ LT   +Y F V      G          P+  ++ 
Sbjct: 62  EWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTK 103

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 9e-11
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           +   P    V  V     N+SW+             +  +       W+   +      Q
Sbjct: 2   RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ 61

Query: 249 --INIPNLIEGRQYEFRVYAQNEAG-LSLPSSASNSVQIK 285
             I +  L    QYEF+V  +   G  +  S  S  +  +
Sbjct: 62  EWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR 101

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 6e-12
 Identities = 15/100 (15%), Positives = 29/100 (29%)

Query: 186 PYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 245
           P    +    P         + LSW+          +     K + G  +W  V      
Sbjct: 3   PPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLE 62

Query: 246 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
             Q  +  L+    Y  ++           S  S S++++
Sbjct: 63  ALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 102

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 6e-10
 Identities = 10/98 (10%), Positives = 25/98 (25%), Gaps = 2/98 (2%)

Query: 88  LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTT 147
           L      P + +        L W P +    +     +  +       W  +     +  
Sbjct: 6   LRTMDPSP-EAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEAL 64

Query: 148 FI-VQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
              + GL     Y   +  +     G   +    ++ +
Sbjct: 65  QYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 102

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 12/94 (12%), Positives = 20/94 (21%), Gaps = 2/94 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKRE--HPMSSWIRVGNTRFTTM 539
                 P         L L W         N    +  K +      + +          
Sbjct: 7   RTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQY 66

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            + GL P   Y  ++           S  S  + 
Sbjct: 67  ELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLE 100

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 7e-12
 Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 10/112 (8%)

Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEV-----GSDAWQRV 239
           + + +P  P    ++    D   L+W   L    S        + EV             
Sbjct: 1   TQHVQPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAA 59

Query: 240 NVAICAPS-QINIPNLIEGRQYEFRVYAQNEAGL---SLPSSASNSVQIKDP 287
            +        +   +L+    Y  RV  +   G      PS  S  V     
Sbjct: 60  ILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQ 111

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 7e-09
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 9/98 (9%)

Query: 481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKRE--------HPMSSWIRVG 532
           +P  P+   +     D   L W   +    S+  +    + E            + I + 
Sbjct: 5   QPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLS 63

Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
           NT   T+    L P   Y  RV      G       S 
Sbjct: 64  NTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSK 101

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.6 bits (143), Expect = 8e-12
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
            D P    V D+      + W  P       +  Y +   E   +++        +  ++
Sbjct: 4   IDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPL--SQYSV 61

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTS 569
             L PG +YE  + A      SD S+T 
Sbjct: 62  QALRPGSRYEVSISAVRGTNESDASSTQ 89

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.5 bits (122), Expect = 6e-09
 Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 4/90 (4%)

Query: 88  LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTT 147
           +   P   + V +++     + W PP+      +  Y                     + 
Sbjct: 3   VIDGP-TQILVRDVSDTVAFVEWTPPRAKVDFILLKY---GLVGGEGGKTTFRLQPPLSQ 58

Query: 148 FIVQGLTEGQEYLFHVMAVNENGMGPPLEG 177
           + VQ L  G  Y   + AV           
Sbjct: 59  YSVQALRPGSRYEVSISAVRGTNESDASST 88

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.6 bits (112), Expect = 1e-07
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 4/90 (4%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
              P   +V  V      + W  P     +++    +    VG +  +         SQ 
Sbjct: 4   IDGPTQILVRDVSDTVAFVEWTPP----RAKVDFILLKYGLVGGEGGKTTFRLQPPLSQY 59

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
           ++  L  G +YE  + A      S  SS  
Sbjct: 60  SVQALRPGSRYEVSISAVRGTNESDASSTQ 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 9e-12
 Identities = 25/88 (28%), Positives = 40/88 (45%)

Query: 295 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINS 354
           I+   R+    +  +A+F C   G P PT++WL+  + ++ SARH +       T  I+S
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 355 VYGVDADEYVCRAVNKGGVKSTKAELII 382
           V   D   Y     N  G +  +  L I
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 5e-07
 Identities = 21/76 (27%), Positives = 30/76 (39%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
           GE+        G P P +TW R  +V+ +     V T++  +   I      D   Y VV
Sbjct: 14  GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 73

Query: 463 AENDLGMDSAIVKIQI 478
            EN  G   A   + I
Sbjct: 74  VENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 20/84 (23%), Positives = 39/84 (46%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
          P ++ + EG++ +      G+    V+  + G+V+ +  R + T         I  ++  
Sbjct: 6  PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQAS 65

Query: 62 DAGDYTVNLSNSSGSVSGTFTINI 85
          D G+Y+V + NS G     FT+ I
Sbjct: 66 DEGNYSVVVENSEGKQEAEFTLTI 89

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
           PD  + P V         + W       G+++T Y +E      S           +  I
Sbjct: 1   PDQCKPPQVTCRSATCAQVNWE-VPLSNGTDVTEYRLEWGGVEGSMQ-ICYCGPGLSYEI 58

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
            GLSP   Y  RV A +V G    S     +T
Sbjct: 59  KGLSPATTYYCRVQALSVVGAGPFSEVVACVT 90

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 5e-11
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P     P  V+  +     ++W  P  +G   VT Y +E   +     IC        ++
Sbjct: 1   PDQC-KPPQVTCRSATCAQVNWEVPLSNGT-DVTEYRLEWGGVEGSMQICYCGP--GLSY 56

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPP 174
            ++GL+    Y   V A++  G GP 
Sbjct: 57  EIKGLSPATTYYCRVQALSVVGAGPF 82

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 5e-09
 Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 4/91 (4%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           P     P VT        ++W+      G+ +  Y ++   V                  
Sbjct: 1   PDQCKPPQVTCRSATCAQVNWE-VPLSNGTDVTEYRLEWGGVEGSMQICYCGPGL---SY 56

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
            I  L     Y  RV A +  G    S    
Sbjct: 57  EIKGLSPATTYYCRVQALSVVGAGPFSEVVA 87

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 4/100 (4%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI----DKHEVGSDAWQRVNVAI 243
           + PS PG      V      LSW +P +  G            +         ++V V  
Sbjct: 1   EVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN 60

Query: 244 CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQ 283
                + I NL E + Y + V A+N AG      A  ++ 
Sbjct: 61  PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLA 100

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 6e-11
 Identities = 16/101 (15%), Positives = 24/101 (23%), Gaps = 6/101 (5%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNI----TNYIVEKREHPMSSWIRVGNTR 535
           + P  P       +      L W  P    G          +V     P+    +V    
Sbjct: 1   EVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN 60

Query: 536 FTTMAIT--GLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                +    L     Y + V A N  G          + T
Sbjct: 61  PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLAT 101

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 6e-10
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 88  LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTT 147
           +P  P G L  + ++     L W  P    G ++T Y V    ++  +            
Sbjct: 2   VPSEP-GRLAFNVVSSTVTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVD 59

Query: 148 ------FIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAK 184
                  +++ L E Q Y + V A N  G GP  E I  +  +
Sbjct: 60  NPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQ 102

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (141), Expect = 1e-11
 Identities = 18/91 (19%), Positives = 32/91 (35%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
            P+I+   R            +    G P PT +W  G      +    + A+  T ++ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 352 INSVYGVDADEYVCRAVNKGGVKSTKAELII 382
             S    D+  Y  +  N+ G      E+I+
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (115), Expect = 5e-08
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
            PK     R         G    +++ F G P P  TW   +          V+      
Sbjct: 2   KPKILTASR---KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
            +    A   D+  Y++  +N+LG D AI ++ +
Sbjct: 59  SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
           P  P+  T+  +    L L W     +   +   ++V+ R     SW           ++
Sbjct: 3   PWAPENLTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTEQSVDYRHKFSL 59

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSD 570
             +    +Y FRV +            S+
Sbjct: 60  PSVDGQKRYTFRVRSRFNPLCGSAQHWSE 88

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 8e-08
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P  P   L + ++++    L+WN    +       ++V+ R      W   S   +   F
Sbjct: 3   PWAPEN-LTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTEQSVD-YRHKF 57

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPP 174
            +  +   + Y F V +      G  
Sbjct: 58  SLPSVDGQKRYTFRVRSRFNPLCGSA 83

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
            P  P    + ++    + L+W+    +       + +        +W   +V      +
Sbjct: 2   IPWAPENLTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTEQSVDYR--HK 56

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
            ++P++   ++Y FRV ++           S 
Sbjct: 57  FSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 88

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 2e-11
 Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 82  TINITGLPGPPIGP-----LDVSEITKHTCTLHWNPPKYDGG--LKVTHYVVERRDISMP 134
           T + T     P  P     +   E    T  ++W PP    G       Y     +  + 
Sbjct: 1   TAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIH 60

Query: 135 HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKS 185
            W+      +  T  +Q LT    Y F + A N  GMGP  E +     K+
Sbjct: 61  DWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA 111

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 5e-11
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 190 PSPPGIPVVT--QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
            SPP    V   +     + ++W  P +  G +I GY I      +       +     +
Sbjct: 12  TSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGN 70

Query: 248 Q--INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMA 289
           +    I  L     Y F++ A+N  G+      S +VQ + P A
Sbjct: 71  RLTHQIQELTLDTPYYFKIQARNSKGMGPM---SEAVQFRTPKA 111

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 482 PDPPQFPTVE--DIGHDSLALVWRAPIWDGGSNITNYIVE---KREHPMSSWIRV-GNTR 535
             PP+  TV   +    ++ + W+ P  +    IT YI+         +  W+       
Sbjct: 12  TSPPKDVTVVSKEGKPKTIIVNWQ-PPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGN 70

Query: 536 FTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
             T  I  L+    Y F++ A N  G    S      T
Sbjct: 71  RLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 14/105 (13%)

Query: 293 PEIIVPL-RNANAIQNHNAQFQCTITGCPKPTISWLKGSREI-------------TPSAR 338
           P +   L  NA+ +   + +F C +    +P I W+K   +                 A 
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 339 HHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
                + +   L I +V   DA EY C A N  G+    A L ++
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 13/89 (14%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIES-------------GGHFHVETSERHAILTIR 449
           G +V          +P I W +  E   S                    T +   +L IR
Sbjct: 20  GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 79

Query: 450 DASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           + +  D   Y  +A N +G+      + +
Sbjct: 80  NVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 13/98 (13%)

Query: 1   MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG-------------RVVQSDDRFKFTVL 47
           +P       G + +       D    +   K+               +         T  
Sbjct: 11  LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTD 70

Query: 48  DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINI 85
            +  +++I+ +  EDAG+YT    NS G    +  + +
Sbjct: 71  KEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 57.8 bits (139), Expect = 3e-11
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 384 TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 443
           +APK+   P         +G++V +    TG P P + W  + +            +   
Sbjct: 1   SAPKYEQKPE--KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKP-----LSGGRATVTD 53

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
           + L I+   N D   Y   A N+ G       +Q++
Sbjct: 54  SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 57.5 bits (138), Expect = 4e-11
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 292 APEIIV-PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
           AP+    P +     Q  +    C +TG P P + W   ++ ++   R  +        L
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT----DSGL 56

Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           +I  V   D   Y CRA N+ G K  +  + +
Sbjct: 57  VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
             + + +G +  +     G     V  + N + +      + TV D  ++I  K ++  
Sbjct: 10 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG---RATVTDSGLVI--KGVKNG 64

Query: 62 DAGDYTVNLSNSSGSVSGTFTINI 85
          D G Y    +N  G       + +
Sbjct: 65 DKGYYGCRATNEHGDKYFETLVQV 88

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 4e-11
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLK---VTHYVVERRDISMPHWICISTTCHD 145
             PP+G +  S ++  T  + W         K     +Y V  +     +    +     
Sbjct: 2   MMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 60

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
            +++V GL     Y F VM          
Sbjct: 61  LSYLVTGLKPNTLYEFSVMVTKGRRSSTW 89

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 2e-10
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 4/96 (4%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH----PMSSWIRVGNTRFT 537
             PP       + HD++ + W          IT+            P ++  +  N    
Sbjct: 2   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 61

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           +  +TGL P   YEF V        S  S T+   T
Sbjct: 62  SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTT 97

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 6e-08
 Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 4/91 (4%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSR---IQGYWIDKHEVGSDAWQRVNVAICAP 246
             PP     + +  D + ++W         +    + Y +          +  N      
Sbjct: 2   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 61

Query: 247 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
           S   +  L     YEF V        S  S 
Sbjct: 62  S-YLVTGLKPNTLYEFSVMVTKGRRSSTWSM 91

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 6e-11
 Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 6/110 (5%)

Query: 88  LPGPPIGPLDVSEITKHTCTLHWNPPKYDG---GLKVTHYVVERRDISMPHWICISTTCH 144
           L    +   +   +T  T  + W   +      G +V +        +       +    
Sbjct: 14  LGDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPT 73

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPG 194
           + + ++  L +G  Y   V        G   E       ++  +     G
Sbjct: 74  ERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSE---SKTVRTTEESGPSSG 120

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 8/97 (8%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS------WIRVGNTRFT 537
             +      +   ++ + W          I  Y V  R+            +        
Sbjct: 18  LVRLHNPVVLTPTTVQVTWTVD--RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTER 75

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           +  +  L  G  YE +V       +   S +  + TT
Sbjct: 76  SAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTT 112

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 6e-11
 Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 2/89 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMA 540
           P+ P+  +        +   W     +        +  +      +  +   +T  +   
Sbjct: 4   PEKPKNLSCIVNEGKKMRCEW-DGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV 62

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
                     E  V AEN  G+      +
Sbjct: 63  DYSTVYFVNIEVWVEAENALGKVTSDHIN 91

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 9/86 (10%), Positives = 15/86 (17%), Gaps = 2/86 (2%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P  P   L             W+    +  L+    +                    +  
Sbjct: 4   PEKPKN-LSCIVNEGKKMRCEWDGG-RETHLETNFTLKSEWATHKFADCKAKRDTPTSCT 61

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPP 174
           +             V A N  G    
Sbjct: 62  VDYSTVYFVNIEVWVEAENALGKVTS 87

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 13/99 (13%), Positives = 22/99 (22%), Gaps = 7/99 (7%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           P  P         G  +   WD   +        + +                    S  
Sbjct: 4   PEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTSCT 61

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPM 288
              + +     E  V A+N  G       +      DP+
Sbjct: 62  VDYSTVYFVNIEVWVEAENALGKVTSDHIN-----FDPV 95

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 8e-11
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 295 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH--IFAEGDTYTLII 352
           +   L +  A      + +C ++      + W K   EI P  +    I  EG  + LII
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELII 382
                 DA EY            + A+L +
Sbjct: 62  EGATKADAAEYSVMTTG----GQSSAKLSV 87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH--AILTIRDASNVDTAPYR 460
           GE V ++   +      + W+++ E I  G              IL I  A+  D A Y 
Sbjct: 15  GERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYS 73

Query: 461 VVAENDLGMDSAIVK 475
           V+           V 
Sbjct: 74  VMTTGGQSSAKLSVD 88

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
           P  P           S+ L W A   + G  +T Y V       +          TT  I
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDV------YNGTALATTVTGTTATI 55

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           +GL+    Y F V A++  G    ++ +  + T
Sbjct: 56  SGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P  P   L  +  T  + TL W     + G  VT Y V        +   ++TT   TT 
Sbjct: 4   PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDV-------YNGTALATTVTGTTA 53

Query: 149 IVQGLTEGQEYLFHVMAVNENG 170
            + GL     Y F V A +  G
Sbjct: 54  TISGLAADTSYTFTVKAKDAAG 75

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 54.0 bits (129), Expect = 5e-10
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           P+ P     T      + LSW    D+ G      +       +             +  
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTASTDNVGVTGYDVYNGTALATT----------VTGTTA 53

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIK 285
            I  L     Y F V A++ AG    S+ASN+V +K
Sbjct: 54  TISGLAADTSYTFTVKAKDAAG--NVSAASNAVSVK 87

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 1e-10
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE---ITPSARHHIFAEGDT 347
           + P  +  ++N        A FQC+  G             +             +    
Sbjct: 1   RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVK-STKAELII 382
            +  + +    DA +Y C    +GGV  S  AEL++
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 10/87 (11%), Positives = 22/87 (25%), Gaps = 7/87 (8%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEV---IESGGHFHVETSE 441
            P F    R ++    + G+    +    G        +                  +  
Sbjct: 2   TPHF---LRIQNV-EVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 57

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLG 468
             A   + + +  D   YR +   + G
Sbjct: 58  FIASFNVVNTTKRDAGKYRCMIRTEGG 84

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 482 PDPPQFPTVE------DIGHDSLALVWRAPI---WDGGSNITNYIVEKREHPMSSWIRVG 532
           PDPP               H  + + W AP       G  +  Y ++ +E   + W  + 
Sbjct: 1   PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMD 60

Query: 533 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
               T++ +  L    +YE RV ++      +    S+++ 
Sbjct: 61  PILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEFSEVLY 100

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 5e-10
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 190 PSPPGIPVVTQV------GGDFVNLSWDKPLD---DGGSRIQGYWIDKHEVGSDAWQRVN 240
           P PP     T +          + + W+ P +     G  +  Y +   EV    W+ ++
Sbjct: 1   PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMD 60

Query: 241 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
                 + + + +L   ++YE RV ++           S  + +  P
Sbjct: 61  --PILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEFSEVLYVTLP 104

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 1e-09
 Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 10/106 (9%)

Query: 89  PGPPIGP-----LDVSEITKHTCTLHWNPPKY---DGGLKVTHYVVERRDISMPHWICIS 140
           P PPI                   + W  P+      G  V  Y ++ ++++   W  + 
Sbjct: 1   PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMM- 59

Query: 141 TTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSP 186
                T+  V  L   +EY   V +   N  G   E    +    P
Sbjct: 60  DPILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEFSEVLYVTLP 104

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 389 NVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG----GHFHVETSERHA 444
             PPR       +      ++    G P P + W  + + +         ++ E      
Sbjct: 3   YYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 62

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 485
            L     ++ +   Y ++A+N LG  +  +       P P 
Sbjct: 63  CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPV 103

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 6/98 (6%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF----AEGDTY 348
           P  +V L             +  + G P PT+ WL   + +  S   H+      E    
Sbjct: 5   PPRVVSLEEPE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 62

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 386
            L+ N     +   Y   A N  G  +       +  P
Sbjct: 63  CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 100

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 9   EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYII----IFIKEIRKEDAG 64
                 ++    G+ P  +    NG+ ++           +  I    +   +    + G
Sbjct: 16  LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG 75

Query: 65  DYTVNLSNSSGSVSGTFTINITGLPGPP 92
           +YT+   N  G+ + T   +    P P 
Sbjct: 76  NYTLIAKNPLGTANQTINGHFLKEPFPV 103

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 15/92 (16%), Positives = 20/92 (21%), Gaps = 3/92 (3%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
                   +       L L W            +Y +            V   R     +
Sbjct: 3   SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVL---L 59

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           T L P   Y  RV      G    S   +  T
Sbjct: 60  TKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 91

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 10/86 (11%), Positives = 21/86 (24%), Gaps = 5/86 (5%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
               +  L + +       L W   +         Y +   +              +   
Sbjct: 3   SLSGL-SLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQM----VLEPRV 57

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPP 174
           ++  L     Y+  V  +   G GP 
Sbjct: 58  LLTKLQPDTTYIVRVRTLTPLGPGPF 83

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 6/99 (6%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           +        + +     + L+W             Y +       +  Q     +    +
Sbjct: 2   ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ-----MVLEPR 56

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
           + +  L     Y  RV      G   P S  +  +   P
Sbjct: 57  VLLTKLQPDTTYIVRVRTLTPLGPG-PFSPDHEFRTSPP 94

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 2e-10
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGN-TRFTTMA 540
           P  P+         +S+ +       DGGS I +Y+V  R         +   +    + 
Sbjct: 1   PSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVM 59

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           +  L    +YE  V AEN  G+S  +   
Sbjct: 60  LKSLDWNAEYEVYVVAENQQGKSKAAHFV 88

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 4e-10
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P  P           ++  ++      DGG  + HY+V  R +S      I         
Sbjct: 1   PSAPKLE-GQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHV 58

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPP 174
           +++ L    EY  +V+A N+ G    
Sbjct: 59  MLKSLDWNAEYEVYVVAENQQGKSKA 84

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 5e-09
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           PS P +       G+ + ++  K  DDGGS I+ +++ ++   S  W+           +
Sbjct: 1   PSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIR-HYLVRYRALSSEWKPEIRLPSGSDHV 58

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            + +L    +YE  V A+N+ G S  +   
Sbjct: 59  MLKSLDWNAEYEVYVVAENQQGKSKAAHFV 88

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 481 RPDPPQFPTVE----DIGHDSLALVWRAPIW---DGGSNITNYIVEKREHPMSSWIRVGN 533
           +PDPP    VE    +     L + W  P       G     Y +  +    + W     
Sbjct: 2   QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA 61

Query: 534 TRFTTMAITGLSPGHQYEFRVYAENVYGR-SDPSTTSDLIT 573
            + T   I  L PG +Y  +V  +  +G  S  S  + +  
Sbjct: 62  GQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQI 102

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 7e-09
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 89  PGPPIGP---LDVSEITKHTCTLHWNPPKY---DGGLKVTHYVVERRDISMPHWICISTT 142
           P PP+     +   E  K    + W+PP       G     Y +  +      W      
Sbjct: 3   PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIH-FA 61

Query: 143 CHDTTFIVQGLTEGQEYLFHVMAVNENGM 171
              T F +  L  GQ+YL  V    ++G 
Sbjct: 62  GQQTEFKILSLHPGQKYLVQVRCKPDHGY 90

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 189 KPSPPGIPVVT----QVGGDFVNLSWDKPL---DDGGSRIQGYWIDKHEVGSDAWQRVNV 241
           +P PP    V     +    ++ + W  P       G     Y I      +  W+    
Sbjct: 2   QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHF- 60

Query: 242 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
                ++  I +L  G++Y  +V  + + G    S+ S +  I+ P
Sbjct: 61  -AGQQTEFKILSLHPGQKYLVQVRCKPDHG--YWSAWSPATFIQIP 103

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.3 bits (132), Expect = 2e-10
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
           P+ +  + +  A    + ++ C  +G P+P + WL+  + +    R  +        L  
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRF 57

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           + +   D+  Y C A NK G     AEL +
Sbjct: 58  SKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
           P +       DT   D G ++      +G P+P + W RD + + S              
Sbjct: 2   PDWLDVIT--DTEA-DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIE----VSGGE 54

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           L        D+  Y+ VAEN  G   A  ++ +
Sbjct: 55  LRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
                  G + +     +G     V   ++G+ + S +R +         +   ++  E
Sbjct: 8  ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLE 63

Query: 62 DAGDYTVNLSNSSGSVSGTFTINI 85
          D+G Y     N  G+V  +  + +
Sbjct: 64 DSGMYQCVAENKHGTVYASAELTV 87

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 2e-10
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 4/93 (4%)

Query: 85  ITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CISTTC 143
           + G   P +  L   +IT  +  L W          +  Y +          I       
Sbjct: 1   MRGSEVPQLTDLSFVDITDSSIGLRWT---PLNSSTIIGYRITVVAAGEGIPIFEDFVDS 57

Query: 144 HDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLE 176
               + V GL  G +Y   V+ +   G   P  
Sbjct: 58  SVGYYTVTGLEPGIDYDISVITLINGGESAPTT 90

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG--NTRFTTM 539
                  +  DI   S+ L W        S I  Y +          I     ++     
Sbjct: 6   VPQLTDLSFVDITDSSIGLRWT---PLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYY 62

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
            +TGL PG  Y+  V      G S P+T +
Sbjct: 63  TVTGLEPGIDYDISVITLINGGESAPTTLT 92

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 7e-08
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 3/90 (3%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
                      +    + L W        S I GY I     G       +    +    
Sbjct: 6   VPQLTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYY 62

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            +  L  G  Y+  V      G S P++ +
Sbjct: 63  TVTGLEPGIDYDISVITLINGGESAPTTLT 92

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 7/92 (7%)

Query: 482 PDPPQFPTVEDIGH-DSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT---RFT 537
             PP    +E       L + W         +IT Y +            +        +
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
           +     LSPG +Y   VY       S P + +
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISDT 90

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 190 PSPPGIPVVTQVGG-DFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS- 247
            SPP    +        + +SW++        I GY I            +   + A   
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 248 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
                NL  G +Y   VY   +   S+P S +
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISDT 90

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT--CHDT 146
             PP      +       T+ W          +T Y +     +      +        +
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPPLE 176
           +     L+ G EY   V  V ++    P+ 
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPIS 88

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 20/93 (21%), Positives = 25/93 (26%), Gaps = 5/93 (5%)

Query: 292 APEIIVPLRNANAIQ---NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 348
            P       +    +          C     P  T  W     E+               
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-AGD 62

Query: 349 TLIINSVYGVDADEYVCRAVNKGG-VKSTKAEL 380
            +I N V   DA  Y C A N  G V S +A L
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 2/94 (2%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
            P F   P           E V +       P     W  +   ++ G            
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD- 62

Query: 445 ILTIRDASNVDTAPYRVVAENDLGM-DSAIVKIQ 477
           ++        D   Y+ VA N  G   S    ++
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 54.7 bits (130), Expect = 4e-10
 Identities = 17/88 (19%), Positives = 28/88 (31%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
           K P +          +N+    +C I G  +      K   +      H+     D  +L
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKA 378
           +       D   Y C A    GV S++ 
Sbjct: 61  VFLRPQASDEGHYQCFAETPAGVASSRV 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 4/96 (4%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
            P     P       F +    V++    G  +     ++ +    +    +    +   
Sbjct: 2   YPVLKDQPA---EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 58

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMD-SAIVKIQIS 479
            L        D   Y+  AE   G+  S ++  + +
Sbjct: 59  SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKT 94

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY--- 348
           AP I       +   +H+     T+ G PKP + W      +  S           +   
Sbjct: 4   APTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 349 --TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 389
              L +++   ++  +Y   A N+ G    +     M  P  +
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 4e-09
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 389 NVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH-----VETSERH 443
           +  P            +  +     G PKP + W+ +  ++    +          +E H
Sbjct: 2   HFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD 483
             L + + ++++   Y ++A+N+ G D   +       P 
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 5/88 (5%)

Query: 8   PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKF-----TVLDDYIIIFIKEIRKED 62
               +  +     G+    +    NG ++                + +  + +      +
Sbjct: 14  TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMN 73

Query: 63  AGDYTVNLSNSSGSVSGTFTINITGLPG 90
            GDYT+   N  G      + +  G PG
Sbjct: 74  NGDYTLIAKNEYGKDEKQISAHFMGWPG 101

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.4 bits (130), Expect = 5e-10
 Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 292 APEIIVPL-RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
           AP I      +  A+       +C   G P P I W K     T               L
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSE------PLL 57

Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            I +V   D   Y C A N  G  + +  +II
Sbjct: 58  HIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
           AP      +F    Y   G+ V ++    G P P+I W + +           +      
Sbjct: 4   APSIKA--KFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDG------SQTSKWLSSEP 55

Query: 445 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
           +L I++    D   Y   AEN  G D+   +I I
Sbjct: 56  LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 6/85 (7%)

Query: 1  MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK 60
           P   Y   G    ++ F  G+   ++   K      S       +L       I+ +  
Sbjct: 11 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLL------HIQNVDF 64

Query: 61 EDAGDYTVNLSNSSGSVSGTFTINI 85
          ED G Y     N  G  +    I I
Sbjct: 65 EDEGTYECEAENIKGRDTYQGRIII 89

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (129), Expect = 7e-10
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 389 NVPPRFRDT-----AYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH--FHVETSE 441
           NVPP  +       A  + G++V +     G+P+P ++W +D E IE+          S+
Sbjct: 1   NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60

Query: 442 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 481
             + LTIR+    D A Y  +AEN  G   A + +++  +
Sbjct: 61  DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 293 PEIIVP--LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTY 348
           P +     + NA A    +    C   G P+PT+SW K    I              D+ 
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            L I +V   D  EYVC A NK G +     L +
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 7  IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD--DRFKFTVLDDYIIIFIKEIRKEDAG 64
             G +  +     G     +S TK+G  ++++  D  K    DD   + I+ + K D  
Sbjct: 17 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEA 76

Query: 65 DYTVNLSNSSGSVSGTFTINI 85
          +Y     N +G    +  + +
Sbjct: 77 EYVCIAENKAGEQDASIHLKV 97

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 12/103 (11%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCP---KPTISWLKG---------SREITPSARH 339
               ++  ++       +  F   + G      P + W KG          + +     +
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 340 HIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
              ++   + L I          Y C    K     +   L +
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 12/90 (13%)

Query: 403 GENVVVKIPFTGYP---KPKITWYRD---------NEVIESGGHFHVETSERHAILTIRD 450
           G ++       G      P + W++           + ++    +   +      L I D
Sbjct: 19  GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITD 78

Query: 451 ASNVDTAPYRVVAENDLGMDSAIVKIQISD 480
           A    T  YR         D +   + + +
Sbjct: 79  AQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 304 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY-------TLIINSVY 356
           A++ H+     ++ G P P++ WL     +  ++                   L +N   
Sbjct: 12  AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPT 71

Query: 357 GVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
            V+   Y   A N  G  S       M  P F   P
Sbjct: 72  HVNNGNYTLLAANPFGQASASIMAAFMDNP-FEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 7e-09
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV-------ETSERHAILTIRDASNV 454
           +  +  +     G P P + W  +  V+                 + RH  L +   ++V
Sbjct: 14  EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV 73

Query: 455 DTAPYRVVAENDLGMDSAIVKIQISDRPD--PPQ 486
           +   Y ++A N  G  SA +     D P    P+
Sbjct: 74  NNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 10/99 (10%)

Query: 1   MPNALYIPEGD---NTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKF-------TVLDDY 50
           MP ++ +       +  +     G     +    NG V+                    +
Sbjct: 3   MPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH 62

Query: 51  IIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
             + + +    + G+YT+  +N  G  S +        P
Sbjct: 63  GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 1e-09
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 82  TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR-DISMPHWICIS 140
           ++NI     PP   L V++    + +L W   K         + ++ R D +        
Sbjct: 1   SVNIQ--MAPPS--LQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTE 55

Query: 141 TTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPL 175
           T  +  +  +  L     Y   V           +
Sbjct: 56  TLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGI 90

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           + +PP + V     GD  +L W+            + I   +  +         +     
Sbjct: 5   QMAPPSLQVT--KDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHS 62

Query: 249 INIPNLIEGRQYEFRVYAQNEAGL--SLPSSASNSV 282
           + +P L    +Y  RV  +        + S  S + 
Sbjct: 63  MALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEAR 98

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 9/96 (9%)

Query: 478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEK--REHPMSSWIRVGNTR 535
           ++ +  PP     +    DS +L W             + ++                  
Sbjct: 2   VNIQMAPPSLQVTK--DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQN 59

Query: 536 FTTMAITGLSPGHQYEFRVYAENVYGR-----SDPS 566
             +MA+  L P  +Y  RV             S+ S
Sbjct: 60  AHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWS 95

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITG 543
            PQ P  +  G   +   W       G  +   +    +    S   + +++  ++ +T 
Sbjct: 4   APQNPNAKAAGSRKIHFNWL---PPSGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTN 60

Query: 544 LSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           L P   YE +V A    G    S+     T
Sbjct: 61  LYPYCDYEMKVCAYGAQGEGPYSSLVSCRT 90

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 2e-09
 Identities = 15/85 (17%), Positives = 21/85 (24%), Gaps = 5/85 (5%)

Query: 90  GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFI 149
           G P  P +           +W PP          Y V+                   +  
Sbjct: 3   GAPQNP-NAKAAGSRKIHFNWLPPSGKP----MGYRVKYWIQGDSESEAHLLDSKVPSVE 57

Query: 150 VQGLTEGQEYLFHVMAVNENGMGPP 174
           +  L    +Y   V A    G GP 
Sbjct: 58  LTNLYPYCDYEMKVCAYGAQGEGPY 82

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 5e-09
 Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 5/87 (5%)

Query: 191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQIN 250
             P  P     G   ++ +W  P          YWI             ++       + 
Sbjct: 3   GAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDS-----ESEAHLLDSKVPSVE 57

Query: 251 IPNLIEGRQYEFRVYAQNEAGLSLPSS 277
           + NL     YE +V A    G    SS
Sbjct: 58  LTNLYPYCDYEMKVCAYGAQGEGPYSS 84

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 2/86 (2%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P      +     T  + TL W  P+      +  Y +   +     +          T 
Sbjct: 1   PSTV-PIMHQVSATMRSITLSWPQPE-QPNGIILDYEIRYYEKEHNEFNSSMARSQTNTA 58

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPP 174
            + GL  G  Y+  V A    G G  
Sbjct: 59  RIDGLRPGMVYVVQVRARTVAGYGKF 84

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 21/93 (22%), Positives = 27/93 (29%), Gaps = 2/93 (2%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMA- 540
           P              S+ L W          I +Y +   E   + +        T  A 
Sbjct: 1   PSTVPIMHQVSATMRSITLSWP-QPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTAR 59

Query: 541 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
           I GL PG  Y  +V A  V G    S      T
Sbjct: 60  IDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT 92

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 4e-09
 Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           PS   I          + LSW    +     I  Y I  +E   + +             
Sbjct: 1   PSTVPIMHQVSATMRSITLSWP-QPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTN-TA 58

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
            I  L  G  Y  +V A+  AG    S    
Sbjct: 59  RIDGLRPGMVYVVQVRARTVAGYGKFSGKMC 89

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 5/100 (5%)

Query: 480 DRPD-PPQFPTVEDIGHDSLALVWRAPI-WDGGSNITNYIVEKREHPMSSWIRV---GNT 534
           D P   P     +    ++L + W      +  +   +Y V  +    ++        + 
Sbjct: 2   DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDW 61

Query: 535 RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           R   + I       +Y  +V A N  G S+ +    +  +
Sbjct: 62  RQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYS 101

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 3/89 (3%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPP-KYDGGLKVTHYVVERRDISMPHWI--CISTTCHD 145
           P      +       +   + W P  + +      HY V  +                  
Sbjct: 4   PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQ 63

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
              ++       +YL  V+A+N+ G    
Sbjct: 64  NNIVIADQPTFVKYLIKVVAINDRGESNV 92

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 45.7 bits (107), Expect = 7e-07
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 2/92 (2%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ- 248
              P   V      + + +SW    +   +    ++    +    A    N  I    Q 
Sbjct: 5   FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQN 64

Query: 249 -INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
            I I +     +Y  +V A N+ G S  ++  
Sbjct: 65  NIVIADQPTFVKYLIKVVAINDRGESNVAAEE 96

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 5/97 (5%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGG-----SNITNYIVEKREHPMSSWIRVGNTRF 536
              P     + +   ++ L W                  Y     ++       +     
Sbjct: 2   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 61

Query: 537 TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 573
              +I+ L P   Y+ ++   N  G S+ S      T
Sbjct: 62  YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET 98

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (123), Expect = 5e-09
 Identities = 12/90 (13%), Positives = 18/90 (20%), Gaps = 6/90 (6%)

Query: 91  PPIGP--LDVSEITKHTCTLHWNPPKYDGG----LKVTHYVVERRDISMPHWICISTTCH 144
           P  GP       + + T  L W                 Y       +   +        
Sbjct: 1   PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 60

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPP 174
                +  L     Y   +   NE G    
Sbjct: 61  RYWHSISHLQPETSYDIKMQCFNEGGESEF 90

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKP-LDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
            + P I     V    + L W      +  + I G++I      SD        +    +
Sbjct: 2   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 61

Query: 249 --INIPNLIEGRQYEFRVYAQNEAGLSLPSSA 278
              +I +L     Y+ ++   NE G S  S+ 
Sbjct: 62  YWHSISHLQPETSYDIKMQCFNEGGESEFSNV 93

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 4e-09
 Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 8/98 (8%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTI-------SWLKGSREITPSARHHIFAEG 345
           P +     + +  +   A   C     P  T             +      +R  + +  
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 346 DTYTLIINSVYGVD-ADEYVCRAVNKGGVKSTKAELII 382
               L I ++       +Y C   +  G       L +
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.0 bits (123), Expect = 4e-09
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 3/89 (3%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI---RVGNTRFTT 538
              P+   +E+    ++ L W          IT Y    R    +       +      +
Sbjct: 7   MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARS 66

Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPST 567
             I  L     YEF++ + +    S+ S 
Sbjct: 67  FKIAPLETATMYEFKLQSFSAASASEFSA 95

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.9 bits (120), Expect = 9e-09
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVT--HYVVERRDISMPHWICISTTCHDT 146
           P P    L++ E ++    LHW+         +T  +        +  ++       H  
Sbjct: 6   PMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHAR 65

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPP 174
           +F +  L     Y F + + +       
Sbjct: 66  SFKIAPLETATMYEFKLQSFSAASASEF 93

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
           +  D    P +  + +     V L W    D     I GY+       S           
Sbjct: 2   AALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEG 61

Query: 245 APS-QINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
           A +    I  L     YEF++ + + A  S  S+
Sbjct: 62  AHARSFKIAPLETATMYEFKLQSFSAASASEFSA 95

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 6e-09
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS----MPHWICISTTCH 144
           P  P   +D  E    T  + ++ P+  GG+ +  Y  E R +        W        
Sbjct: 3   PSSP--SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 60

Query: 145 DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLE 176
           +    + GL     Y   + A+N  G+G    
Sbjct: 61  EGIVTIVGLKPETTYAVRLAALNGKGLGEISA 92

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 7e-09
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 247
           D PS P I  V         + +D+P   GG  I  Y  +   VG + W          S
Sbjct: 1   DTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 59

Query: 248 ---QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
               + I  L     Y  R+ A N  GL   S+AS 
Sbjct: 60  MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 95

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 7e-09
 Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 6/100 (6%)

Query: 480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT----- 534
           D P  P    V +    +  + +  P   GG  I  Y  E R      W           
Sbjct: 1   DTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 59

Query: 535 RFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
               + I GL P   Y  R+ A N  G  + S  S+  T 
Sbjct: 60  MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 99

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 7e-09
 Identities = 19/113 (16%), Positives = 25/113 (22%), Gaps = 19/113 (16%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRF-- 536
           S  P  P    +     D + L W  P    G NI  Y                   F  
Sbjct: 5   SSGPGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMR 62

Query: 537 ---------------TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                             A    +      FR+ A+N  G    +    L   
Sbjct: 63  IYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGN 115

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 5e-08
 Identities = 18/104 (17%), Positives = 24/104 (23%), Gaps = 19/104 (18%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW------------ 136
           PG P               L W PP    G  +  Y       +                
Sbjct: 8   PGAPSTV--RISKNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIY 64

Query: 137 ----ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLE 176
                  + T           T     +F + A NE G GP  +
Sbjct: 65  CGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQ 108

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 18/122 (14%)

Query: 183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVA 242
             S    P  P    ++    D ++LSW+ P    G  I  Y        +      +  
Sbjct: 1   GSSGSSGPGAPSTVRIS-KNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQL 58

Query: 243 ICAPS---------------QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 287
           +                        +        FR+ A+NE G   P++    +Q    
Sbjct: 59  VFMRIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG-PATQIRWLQGNSK 117

Query: 288 MA 289
             
Sbjct: 118 SG 119

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 7e-09
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS--MPHWICISTTCHDT 146
                GP+       +   L W  PK   GL V + V  RR     +           + 
Sbjct: 5   DDIV-GPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALER 63

Query: 147 TFIVQGLTEGQEYLFHVMAVNENGMGPP 174
              ++GL+ G      + A +  G G  
Sbjct: 64  GCRLRGLSPGNYS-VRIRATSLAGNGSW 90

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 2e-08
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 4/96 (4%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKR---EHPMSSWIRVGNTRFTT 538
            D     T E   ++ + L+W+    +    I  Y V  R   +  +       +     
Sbjct: 5   DDIVGPVTHEIFENNVVHLMWQ-EPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALER 63

Query: 539 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
                      Y  R+ A ++ G    +  +    T
Sbjct: 64  GCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVT 99

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 6e-07
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 1/97 (1%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
               G         + V+L W +P +  G  +      +     +          A  + 
Sbjct: 5   DDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERG 64

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 286
                +    Y  R+ A + AG    +  +    + D
Sbjct: 65  CRLRGLSPGNYSVRIRATSLAGNGSWTEPT-YFYVTD 100

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 8e-09
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 5/97 (5%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWD-GGSNITNYIVEKREHPMSSWIR--VGNTRFTT 538
            D P              ++   P  +   ++   Y V+      +  ++        T 
Sbjct: 5   LDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTE 64

Query: 539 MAITGLSPGHQYEFRVYA--ENVYGRSDPSTTSDLIT 573
             ++ L    +Y F V A           S  S+ ++
Sbjct: 65  CVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVS 101

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 9e-09
 Identities = 19/117 (16%), Positives = 28/117 (23%), Gaps = 6/117 (5%)

Query: 80  TFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH---W 136
            F+    G P PP      + +T  T  + W PP            V    +        
Sbjct: 2   EFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVA 61

Query: 137 ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPP 193
             I  T   T   +  L   +     V  ++  G                   P  P
Sbjct: 62  EVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSA---VAAVPPELLVPPTP 115

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 31/126 (24%)

Query: 386 PKFNVPP--RFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI-------------- 429
           PK ++    R  DT     G  + + +P +G P P + W +                   
Sbjct: 5   PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 64

Query: 430 ---------------ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV 474
                          E+ G   VET++  +I T+  A   D   Y V  +N +G D   +
Sbjct: 65  TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL 124

Query: 475 KIQISD 480
            +++ D
Sbjct: 125 TVKVID 130

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 35/130 (26%)

Query: 283 QIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA----- 337
           +I      + P+ IV       +  +  +    I+G P PT+ W K   +   +      
Sbjct: 6   KIHLDCPGRIPDTIV------VVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAP 59

Query: 338 ------------------------RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV 373
                                   R  +    D     +      D   Y     N  G 
Sbjct: 60  DAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE 119

Query: 374 KSTKAELIIM 383
                 + ++
Sbjct: 120 DQVNLTVKVI 129

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 13/79 (16%), Positives = 26/79 (32%)

Query: 7   IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 66
             +                +  +     + +++ R +     D  I  ++   KED G Y
Sbjct: 50  GNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVY 109

Query: 67  TVNLSNSSGSVSGTFTINI 85
           TV + N  G      T+ +
Sbjct: 110 TVTVKNPVGEDQVNLTVKV 128

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 353
           E+  PL          A F+  ++  P     W    + +T S    I  +G  + LI++
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLTASPDCEIIEDGKKHILILH 61

Query: 354 SVYGVDADEYVCRAVNKGGVKSTKAELII 382
           +       E   +A N      + A L +
Sbjct: 62  NCQLGMTGEVSFQAAN----AKSAANLKV 86

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 462
           GE    +I     P     W    + + +     +    +  IL + +     T      
Sbjct: 16  GETAHFEIE-LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQ 74

Query: 463 AENDLGMDSAIVKIQ 477
           A N     +A +K++
Sbjct: 75  AANAKS--AANLKVK 87

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDTY--- 348
           P        ++A   + A   C+   G P    +W K    +  + +        +Y   
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 349 ----TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
                L+ + +   D  EY C A N  G   T   + +
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 390 VPPRFRD---TAYFDKGENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVET------ 439
           VPP        +    G   V+      G P  + TW++D  V+ +              
Sbjct: 1   VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60

Query: 440 -SERHAILTIRDASNVDTAPYRVVAENDLGMD--SAIVKIQISD 480
            +     L     S  DT  Y   A N  G    S  V+++  +
Sbjct: 61  LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 3e-08
 Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 4/88 (4%)

Query: 482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 541
           PD P      ++      L W+ P       +  Y ++                     +
Sbjct: 1   PDGPTQLRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAPPLQAETPGSAVDYPL 56

Query: 542 TGLSPGHQYEFRVYAENVYGRSDPSTTS 569
             L     Y   V        + P++ +
Sbjct: 57  HDLVLHTNYTATVRGLRGPNLTSPASIT 84

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 3e-07
 Identities = 18/111 (16%), Positives = 28/111 (25%), Gaps = 10/111 (9%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
           P  P   L    +T+    LHW PP+                      +   T      +
Sbjct: 1   PDGPTQ-LRALNLTEGFAVLHWKPPQNPVDTYDIQV-----TAPGAPPLQAETPGSAVDY 54

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVT 199
            +  L     Y   V  +    +  P      I   +  + P       VT
Sbjct: 55  PLHDLVLHTNYTATVRGLRGPNLTSPA----SITFTTGLEAPRDLEAKEVT 101

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 6/106 (5%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 249
           P  P       +   F  L W  P +   +                         +    
Sbjct: 1   PDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGA------PPLQAETPGSAVDY 54

Query: 250 NIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEI 295
            + +L+    Y   V       L+ P+S + +  ++ P   +A E+
Sbjct: 55  PLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEV 100

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 3/92 (3%)

Query: 480 DRPDPPQFPT--VEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFT 537
           D    P+ P+         S+ + W  P  +    +  Y +        +     + +  
Sbjct: 16  DETRVPEVPSSLHVRPLVTSIVVSWT-PPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQR 74

Query: 538 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
              I  L P   Y   + A N  G   P   S
Sbjct: 75  YYTIENLDPSSHYVITLKAFNNVGEGIPLYES 106

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 86  TGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD 145
           T +P  P            +  + W PP+      V  Y +       PH   I      
Sbjct: 18  TRVPEVPSSL--HVRPLVTSIVVSWTPPENQNI-VVRGYAIGYGIG-SPHAQTIKVDYKQ 73

Query: 146 TTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKS 185
             + ++ L     Y+  + A N  G G PL      +  +
Sbjct: 74  RYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHT 113

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 173 PPLEGINPIKAKSPYDKPSPPGIP--VVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHE 230
           P  + ++    +S  D+   P +P  +  +     + +SW  P ++    ++GY I    
Sbjct: 1   PATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSW-TPPENQNIVVRGYAIGYGI 59

Query: 231 VGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
               A               I NL     Y   + A N  G  +P   S
Sbjct: 60  GSPHAQT--IKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYES 106

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 12/104 (11%)

Query: 296 IVPLRNANAIQNHNAQFQCTITGCP---KPTISW---------LKGSREITPSARHHIFA 343
           I   +        +  F   +       KPTI W          K  + +         +
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 344 EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
              T+ + I       A  Y C    K    S   +L +  +  
Sbjct: 64  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 107

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 14/101 (13%)

Query: 403 GENVVVKIPFTGYP---KPKITWYRDNEVIES---------GGHFHVETSERHAILTIRD 450
           GE++             KP I W++   +  +            F   +      + I  
Sbjct: 15  GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIK 74

Query: 451 ASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVE 491
           A +     YR         DS    +++ +       P ++
Sbjct: 75  AKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT--PNID 113

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 11/63 (17%), Positives = 25/63 (39%)

Query: 30  TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 89
           +K G+ +Q  + F+         + I + +   AG+Y   ++      S +F + +    
Sbjct: 47  SKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 106

Query: 90  GPP 92
           G  
Sbjct: 107 GTT 109

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 5e-08
 Identities = 8/106 (7%), Positives = 24/106 (22%), Gaps = 24/106 (22%)

Query: 96  LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW------------------- 136
                 +     L W P        +  +++  ++    +                    
Sbjct: 8   FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDI 67

Query: 137 -----ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEG 177
                     + +   ++++GL    +Y   V  +          G
Sbjct: 68  DPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYG 113

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 14/117 (11%), Positives = 28/117 (23%), Gaps = 27/117 (23%)

Query: 484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR------------- 530
                +      D + L W         ++  +++  +E P  +                
Sbjct: 4   ELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWT 63

Query: 531 ------------VGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST--TSDLIT 573
                         +       + GL P  QY   V     +     +    SD+I 
Sbjct: 64  VVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIY 120

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 11/123 (8%), Positives = 25/123 (20%), Gaps = 25/123 (20%)

Query: 190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS-- 247
            +        +   D + L W+         + G+ +   E         +      S  
Sbjct: 2   ENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNS 61

Query: 248 ---------------------QINIPNLIEGRQYEFRVYAQNEAGLS--LPSSASNSVQI 284
                                   +  L    QY   V              + S+ + +
Sbjct: 62  WTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYV 121

Query: 285 KDP 287
           +  
Sbjct: 122 QTD 124

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 8e-08
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 7/94 (7%)

Query: 291 KAPEIIVPLRNANAI-QNHNAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAEGDTY 348
           K+      L  A  + + H  +    +       + WLK G       +++   + G   
Sbjct: 4   KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62

Query: 349 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           TL I+     D   Y C        +    EL +
Sbjct: 63  TLTISQCSLADDAAYQCVVGG----EKCSTELFV 92

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 8e-08
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 8/105 (7%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW-------LKGSREITPSARHHIFA 343
             P II   +  +A+     Q +C I   P P           L+       +       
Sbjct: 5   NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64

Query: 344 EGDTYTLIINSVY-GVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
           EG   TL I+++        Y C A N  G  +    L    +  
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 109

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 9e-08
 Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 75  GSVSGTFTINITGLPGPPIGP--LDVSEITKHTCTLHWNPPKYD-GGLKVTHYVVERRDI 131
           GS   + T+N+T    PP  P    V   T     L+W   K      +VT Y V  R  
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTS 60

Query: 132 SMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPS 191
           S  +   +     + T     L   ++Y+  V A  + G G   E I   +  S    PS
Sbjct: 61  SQNNVQVL---NTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITS--SGPS 115

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 4/109 (3%)

Query: 468 GMDSAIVKIQ-ISDRPDPPQFPTVEDIGHDSLALVWRAPIWD-GGSNITNYIVEKREHPM 525
              S  V +      P  P    V +     + L W         S +T Y V  R    
Sbjct: 3   SGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQ 62

Query: 526 SSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
           ++   +   + +   +        Y   V A    G    S    +   
Sbjct: 63  NNVQVLNTNKTSAELVL--PIKEDYIIEVKATTDGGDGTSSEQIRIPRI 109

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-05
 Identities = 19/109 (17%), Positives = 29/109 (26%), Gaps = 8/109 (7%)

Query: 170 GMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDD-GGSRIQGYWIDK 228
           G          +   +    PS P   VV       V L+W++       S + GY +  
Sbjct: 1   GSSGSSG---TVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFY 57

Query: 229 HEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 277
                +  Q     +          L     Y   V A  + G    S 
Sbjct: 58  RTSSQNNVQV----LNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSE 102

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GDTYTLIINSVYG 357
                 Q    +  C++ G  +P I W+K    +    + +I          L + SV  
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63

Query: 358 VDADEYVCRAVNKGG-VKSTKAELII 382
            DA  Y C+  + G    S    L +
Sbjct: 64  SDAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEIR 59
          P  L + +G   K+     G +  ++   K+G VVQ+ D      +       + +K + 
Sbjct: 3  PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 60 KEDAGDYTVNLSNSSGS-VSGTFTINITG 87
          + DAG Y   + +   + +S    + + G
Sbjct: 63 RSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH--AILTIRDASNVDTAPY 459
           +G+ V +     G  +P I W +D  V+++    ++  SE+H    L+++     D   Y
Sbjct: 10  QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 69

Query: 460 RVVAENDLGMD-SAIVKIQI 478
               E+    + S  V + +
Sbjct: 70  WCQVEDGGETEISQPVWLTV 89

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITG---CPKPTISWLKGSREITPSARHHIFAEGD--T 347
            ++I+ L+        +   +C +         T+   +G+  +               T
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62

Query: 348 YTLIINSVYGVDADEYVCRAVNKGGVKS 375
            T    +        + C AV     + 
Sbjct: 63  ATFNSTADREDGHRNFSCLAVLDLMSRG 90

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 484 PPQFPTVEDIGH--DSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTR--FTTM 539
            P    + +     +S  + W AP     S+I+ YI+  R        +         + 
Sbjct: 2   GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58

Query: 540 AITGLSPGHQYEFRVYAENVYGRSDPSTTS 569
            I GL PG  YE ++ +   YG  + +   
Sbjct: 59  TIKGLKPGVVYEGQLISIQQYGHQEVTRFD 88

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 5/91 (5%)

Query: 191 SPPGIPVVTQVGG--DFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 248
           S P    +T+     +   + W+ P       I  Y +      S    +        + 
Sbjct: 1   SGPVEVFITETPSQPNSHPIQWNAPQPS---HISKYILRWRPKNSVGRWKEATIPGHLNS 57

Query: 249 INIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 279
             I  L  G  YE ++ +  + G    +   
Sbjct: 58  YTIKGLKPGVVYEGQLISIQQYGHQEVTRFD 88

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 90  GPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTC-HDTTF 148
           GP    +  +    ++  + WN P+      ++ Y++  R  +       +T   H  ++
Sbjct: 2   GPVEVFITETPSQPNSHPIQWNAPQPS---HISKYILRWRPKNSVGRWKEATIPGHLNSY 58

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEG 177
            ++GL  G  Y   ++++ + G       
Sbjct: 59  TIKGLKPGVVYEGQLISIQQYGHQEVTRF 87

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-07
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
           P + V + NA+     +   +C + G       W+    E + +            T + 
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLT-LA 61

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           N    ++     C A N  G      ++ +
Sbjct: 62  NVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 4/94 (4%)

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
           P   V       A  D G++V+++    G    +  W        +              
Sbjct: 3   PTLKVQVP---NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLT 59

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
           L     S+++       AEND+G     V++ +S
Sbjct: 60  LA-NVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 7/85 (8%), Positives = 22/85 (25%), Gaps = 1/85 (1%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
               +  GD+  ++    G    +           +       +    + +        
Sbjct: 9  VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL-ANVTSDL 67

Query: 62 DAGDYTVNLSNSSGSVSGTFTINIT 86
          +  + T    N  G    +  +N++
Sbjct: 68 NRKNVTCWAENDVGRAEVSVQVNVS 92

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 6e-07
 Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 1/81 (1%)

Query: 403 GENVVVKIPFT-GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
            E  V   P      K  ITWY+D+              +    L    A   D+  Y  
Sbjct: 17  NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 76

Query: 462 VAENDLGMDSAIVKIQISDRP 482
           V  N        +  +  +  
Sbjct: 77  VVRNSSYCLRIKISAKFVENE 97

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 14/81 (17%), Positives = 20/81 (24%), Gaps = 1/81 (1%)

Query: 304 AIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADE 362
           +  N      C +     K TI+W K   +   S             L        D+  
Sbjct: 14  SSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGH 73

Query: 363 YVCRAVNKGGVKSTKAELIIM 383
           Y C   N       K     +
Sbjct: 74  YYCVVRNSSYCLRIKISAKFV 94

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 1/90 (1%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 352
                        +  +A   C +     PTI W    R++            + Y   I
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL-QI 60

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELII 382
             +   D   Y C        +    ++ +
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 17/94 (18%), Positives = 24/94 (25%), Gaps = 4/94 (4%)

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
             F   P       F +GE+ V+         P I W      +             +  
Sbjct: 2   LMFKNAPT---PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVR-FIVLSNNY 57

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 479
           L IR     D   YR         +     IQ+ 
Sbjct: 58  LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 1/85 (1%)

Query: 2  PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKE 61
          P      EG++  +        P  +     GR V      +F V      + I+ I+K 
Sbjct: 8  PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV-LSNNYLQIRGIKKT 66

Query: 62 DAGDYTVNLSNSSGSVSGTFTINIT 86
          D G Y       +        I + 
Sbjct: 67 DEGTYRCEGRILARGEINFKDIQVI 91

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 293 PEIIV-PLRNANAIQNHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 350
             + V   R+ +     +  F CT  +  P  T+ W +      PS             L
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG-----IL 56

Query: 351 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
            I +V   DA  YVC   N   +    A L +
Sbjct: 57  TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 403 GENVVVK-IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 461
           G +V       +  P   + W R +              + + ILTIR+    D   Y  
Sbjct: 17  GADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-----MDFNGILTIRNVQPSDAGTYVC 71

Query: 462 VAENDLGMDSAIVKIQI 478
              N   MD     + +
Sbjct: 72  TGSNMFAMDQGTATLHV 88

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 5/95 (5%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH--IFAEGDTYT 349
            P+ +   ++  A         C     P    ++ K  +++  +               
Sbjct: 5   VPQYVS--KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 350 LIINSVYGVDADEYVCRAVNKGG-VKSTKAELIIM 383
           L+  +    D   Y C   N  G  +    +L ++
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.5 bits (91), Expect = 9e-05
 Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 390 VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA--ILT 447
           VP           G+  ++   +   P     ++++ + +       +    R +   L 
Sbjct: 5   VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLL 64

Query: 448 IRDASNVDTAPYRVVAENDLG 468
            +     D   Y    +N +G
Sbjct: 65  FKTTLPEDEGVYTCEVDNGVG 85

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 89  PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTF 148
             PP G   V+  T     LHW+PP+        + +  R+       +  +    +T  
Sbjct: 8   LSPPRGL--VAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETEL 65

Query: 149 IVQGLTEGQEYLFHVMAVNENGMGPPLEGIN 179
           +V GL +   Y F ++A   + +  P    N
Sbjct: 66  LVPGLIKDVLYEFRLVAFAGSFVSDPSNTAN 96

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTT 538
           S    PP+           + L W  P       +  Y++E R+      +       T 
Sbjct: 5   SSGLSPPRGLVA-VRTPRGVLLHWD-PPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTE 62

Query: 539 MAIT--GLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 574
             +   GL     YEFR+ A      SDPS T+++ T+
Sbjct: 63  TELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS 100

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 244
           S     SPP   V        V L WD P +    R+ GY ++  +              
Sbjct: 3   SGSSGLSPPRGLVAV-RTPRGVLLHWD-PPELVPKRLDGYVLEGRQGSQGWEVLDPAVAG 60

Query: 245 APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN 280
             +++ +P LI+   YEFR+ A   + +S PS+ +N
Sbjct: 61  TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTAN 96

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 9/99 (9%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDT---- 347
           P        ++    + A   C+   G P    SW K    +  +      A  ++    
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 348 ----YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
                 LI + V   D+ EY C+A N  G         +
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 9/89 (10%)

Query: 7   IPEGDNTKVKIF-YAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF--------IKE 57
           +  G+   +    + G  P E S  K+G  + + D  K     +                
Sbjct: 14  VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 73

Query: 58  IRKEDAGDYTVNLSNSSGSVSGTFTINIT 86
           +   D+G+Y     N  G+   +   ++ 
Sbjct: 74  VTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 17/103 (16%), Positives = 26/103 (25%), Gaps = 14/103 (13%)

Query: 293 PEIIVPLRNA-NAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARH------------ 339
           P I+ P             Q  C +TG       W      I                  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 340 HIFAEGDTYTLIINSVYGVDAD-EYVCRAVNKGGVKSTKAELI 381
           +         L I+ +        + C A N  G+ +   +LI
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 104

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 15/105 (14%)

Query: 386 PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG------------G 433
           P    P    +T   D G  + +    TG       W  +  VI+               
Sbjct: 2   PVIVSPAN--ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 59

Query: 434 HFHVETSERHAILTIRDASNVDT-APYRVVAENDLGMDSAIVKIQ 477
             +   S    +L I +  +     P+   A+N  G+D+A +++ 
Sbjct: 60  PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 104

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 9/99 (9%)

Query: 390 VPPRFR---DTAYFDKGENVVVKIPFTG---YPKPKITWYRDNEVIESGGHFHVETSERH 443
            P R       ++   G+ + ++    G     +  +   R  + ++             
Sbjct: 3   TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAE--- 59

Query: 444 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 482
              T+    +   A +    E DL      +    S   
Sbjct: 60  VTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPY 98

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCP-KPTISWLKGSREITPSARHHIFAEGD---- 346
               I      + +     + +C +  C  +P ++W K +            +  +    
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 347 -TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 387
             + L    V   D   Y C A  +  +  + +  + +T  K
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVK 104

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 8/98 (8%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--------EITPSARHHIFAE 344
             +     +    +N + +  CT +G   P + W                 +A +     
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 345 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
             +  +  +SV   D  EY C    +GG    +  + +
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 403 GENVVVKIPFTGYPKPKITWYRDNEV--------IESGGHFHVETSERHAILTIRDASNV 454
            E++ +   ++G+  P++ W               +    +    +   + +T    +  
Sbjct: 16  NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK 75

Query: 455 DTAPYRVVAENDLGMDSAIVKIQI 478
           D   Y  +   + G +   V I +
Sbjct: 76  DNGEYTCMVSEEGGQNYGEVSIHL 99

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 20/123 (16%), Positives = 30/123 (24%), Gaps = 23/123 (18%)

Query: 294 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD------- 346
            +I P     A+    A+  C I+     T   +   R       H      D       
Sbjct: 4   RVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAP 63

Query: 347 ----------------TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNV 390
                              L I +V   D   Y C   +    +    EL +     +  
Sbjct: 64  EYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWIN 123

Query: 391 PPR 393
           P R
Sbjct: 124 PGR 126

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 10/81 (12%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 6  YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGD 65
               D+   ++ +     +     +  +       F   +L +  +  IK + ++D+G 
Sbjct: 19 NFQMTDDID-EVRWERGSTLVAEFKRKMKPFLKSGAF--EILANGDLK-IKNLTRDDSGT 74

Query: 66 YTVNLSNSSGSVSGTFTINIT 86
          Y V + +++G+      +++ 
Sbjct: 75 YNVTVYSTNGTRILNKALDLR 95

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 15/94 (15%)

Query: 292 APEIIVPL--RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT 349
            P +       N    +N      C   G P P +  LK                     
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-------------DGTFPLPI 48

Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
               +V       Y+CRA +  G  + +  + ++
Sbjct: 49  GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 82

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 11/93 (11%), Positives = 22/93 (23%), Gaps = 18/93 (19%)

Query: 391 PPRFRDTAY-----FDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI 445
            PR  +        + +           G P P++   +D       G            
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------- 50

Query: 446 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 478
                 +      Y   A +  G  +  V + +
Sbjct: 51  --SVTVTRDLEGTYLCRARSTQGEVTREVTVNV 81

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 4/79 (5%)

Query: 292 APEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTL 350
            P   V      ++   +    C         T+ W+                      L
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG---MGRRL 62

Query: 351 IINSVYGVDADEYVCRAVN 369
           ++ SV   D+  Y C    
Sbjct: 63  LLRSVQLHDSGNYSCYRAG 81

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 10/84 (11%), Positives = 17/84 (20%), Gaps = 5/84 (5%)

Query: 385 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHA 444
            P   V            G++V +  P           +   +              R  
Sbjct: 6   CPAQEVAR---GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR- 61

Query: 445 ILTIRDASNVDTAPYRVVAENDLG 468
            L +R     D+  Y         
Sbjct: 62  -LLLRSVQLHDSGNYSCYRAGRPA 84

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 303 NAIQNHNAQFQCTITGCPKPTISWLKGSREIT----------PSARHHIFAEGDTYTLII 352
             +   N  F    +  P   + W K   ++            S ++ ++ +  + +L I
Sbjct: 6   YGVVYGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64

Query: 353 NSVYGVDADEYVCRAVNKGGVKSTKAELIIM 383
            ++   D DEY   + N     + K  L ++
Sbjct: 65  YNLTSSDEDEYEMESPNITD--TMKFFLYVL 93

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 14/96 (14%), Positives = 22/96 (22%), Gaps = 4/96 (4%)

Query: 298 PLRNANAIQNHNAQFQC-TITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY 356
                   +     F C      P  +  WL         A    F    T  L I    
Sbjct: 10  ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTE 69

Query: 357 GVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPP 392
             D   Y C A +     +     +     + ++  
Sbjct: 70  ASDLGNYSCFATSHIDFITKS---VFSKFSQLSLAA 102

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 9/80 (11%)

Query: 309 NAQFQCTIT------GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADE 362
           +    C             P + W K  + +     H    +     LI+ +V       
Sbjct: 16  DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGN 72

Query: 363 YVCRAVNKGGVKSTKAELII 382
           Y C A      K      +I
Sbjct: 73  YTCHASYTYLGKQYPITRVI 92

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 6/93 (6%)

Query: 291 KAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDTYT 349
           K  ++  P          + Q  C +       ++ W         ++   + ++     
Sbjct: 2   KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW-----RGLDTSLGAVQSDTGRSV 56

Query: 350 LIINSVYGVDADEYVCRAVNKGGVKSTKAELII 382
           L + +     A   VC     G       +L++
Sbjct: 57  LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 11/92 (11%)

Query: 293 PEIIVPLRNANAIQNHNAQFQCTITGC-PKPTISWLKGSREITPSARHHIFAEGDTYTLI 351
           P   V  ++     N   Q  C   G     TI W +G+ +I   A             +
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPS---------V 52

Query: 352 INSVYGVDADEYVCRAVNKGG-VKSTKAELII 382
           +N      +  + C A N  G   S  A + +
Sbjct: 53  LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	591
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.77
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.75
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.74
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.73
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.73
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.72
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.7
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.69
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.68
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.68
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.66
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.66
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.66
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.65
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.65
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.64
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.64
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.64
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.63
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.63
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.63
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.63
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.63
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.62
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.62
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.61
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.61
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.61
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.6
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.6
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.6
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.59
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.58
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.58
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.58
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.58
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.58
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.57
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.57
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.57
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.57
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.57
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.57
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.57
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.56
d2avga1	110	Cardiac myosin binding protein C, different domain	99.56
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.56
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.56
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.56
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.56
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.56
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.56
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.55
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.55
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.55
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.55
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.54
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.54
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.53
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.52
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.52
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.51
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.51
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.51
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.51
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.5
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.5
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.5
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.49
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.49
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.49
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.48
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.47
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.47
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.46
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.46
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.46
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.46
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.45
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.45
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.45
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.45
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.44
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.44
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.44
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.43
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.43
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.43
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.43
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.42
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.42
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.42
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.42
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.42
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.41
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.41
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.41
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.41
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.4
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.4
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.4
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.4
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.4
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.39
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.39
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.39
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.39
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.39
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.39
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.39
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.38
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.38
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.38
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.38
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.37
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.37
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.37
d2avga1	110	Cardiac myosin binding protein C, different domain	99.37
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.37
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.36
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.36
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.35
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.35
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.35
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.35
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.34
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.34
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.34
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.34
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.33
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.33
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.33
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.33
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.32
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.31
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.31
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.31
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.3
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.3
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.3
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.3
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.29
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.29
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.29
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.29
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.29
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.28
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.28
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.28
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.28
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.28
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.28
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	99.27
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.25
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.25
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	99.25
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.25
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.24
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.23
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.23
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.22
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.22
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.22
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.22
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.22
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.22
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	99.19
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.18
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.18
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	99.18
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.18
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.18
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.18
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.17
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.16
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.16
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.15
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.14
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.13
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.13
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.12
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.11
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	99.1
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.1
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.1
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.1
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.1
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.09
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.09
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.09
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.08
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.06
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.06
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.06
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.02
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	99.02
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.02
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	99.0
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	98.97
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	98.97
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	98.97
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.96
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	98.96
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	98.94
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	98.93
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	98.93
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.91
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.91
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.9
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.88
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	98.88
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.87
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.87
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.87
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.86
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.86
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	98.86
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.85
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.84
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.84
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.84
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.83
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.82
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.82
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.81
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.8
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	98.79
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.79
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.79
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.79
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.78
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.78
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	98.77
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.77
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	98.77
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.76
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.75
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	98.74
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	98.74
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.74
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	98.73
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	98.73
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.72
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	98.7
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.7
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.7
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.7
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.69
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.69
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.69
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.69
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	98.68
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.68
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.68
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.68
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.68
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.67
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.67
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.67
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.66
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	98.66
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	98.66
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	98.66
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	98.66
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	98.65
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.65
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.65
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.65
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.65
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.65
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.64
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.63
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.63
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.63
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.62
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.62
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.61
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.61
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.61
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.61
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.6
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.59
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.58
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.58
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.57
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.57
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.57
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.56
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.56
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.56
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.56
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	98.56
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.55
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.55
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.55
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.54
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.54
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.53
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.52
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.51
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	98.51
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.5
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.49
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.49
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	98.48
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.48
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	98.48
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.47
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.47
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	98.47
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.46
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.45
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	98.45
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.45
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.44
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.43
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.43
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.43
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.42
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.41
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.41
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.4
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.4
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.39
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.38
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.38
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.38
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.37
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.36
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.35
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.34
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.33
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.33
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	98.32
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.32
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.31
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.31
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.3
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.3
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.28
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.28
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.27
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.26
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.26
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.25
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.25
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.25
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.24
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.24
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.24
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.23
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.23
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.23
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.22
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.22
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.21
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.2
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.2
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.19
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.18
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.17
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.16
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.14
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.14
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.11
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.1
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.1
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.09
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.09
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.09
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.08
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.07
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.07
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.06
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.05
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.04
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.03
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.02
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.02
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.02
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.01
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.0
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.0
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.99
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.99
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.98
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.97
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.97
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	97.97
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.97
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.97
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.97
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.96
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.96
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.95
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.95
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.95
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.94
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.94
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.94
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.94
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.94
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.93
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.93
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.93
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.93
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.92
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.92
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.92
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.92
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.92
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.91
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.91
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.9
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.9
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.89
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.89
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.88
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.88
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.87
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.87
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.87
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.86
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.86
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.86
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.86
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.86
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.86
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.85
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.84
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.84
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.83
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.83
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.83
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.83
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.83
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.82
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.82
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.82
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.81
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.81
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.81
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.8
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.77
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.76
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.75
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.75
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.75
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.74
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.74
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.73
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.72
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.72
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.71
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.71
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.71
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.71

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.7e-19  Score=130.17  Aligned_cols=94  Identities=22%  Similarity=0.380  Sum_probs=88.7

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      .|+++.+.+|+++.|.|.+.|.|.+.+.|+|||+.|....++++...++.++|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus         6 ~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   85 (101)
T d2cqva1           6 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQ   85 (101)
T ss_dssp             CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECC
T ss_pred             eCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEE
Confidence            47889999999999999999999999999999999999999999988888999999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCC
Q psy12425         81 FTINITGLPGPPIG   94 (591)
Q Consensus        81 ~~l~v~~~p~~p~~   94 (591)
                      +.|.|.+.|.+|..
T Consensus        86 ~~l~V~~~P~pP~g   99 (101)
T d2cqva1          86 VNLTVVDKPDPPAG   99 (101)
T ss_dssp             EEEEEECSCSCCCC
T ss_pred             EEEEEEecCCCcCC
Confidence            99999999988753

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.77  E-value=9.6e-19  Score=125.17  Aligned_cols=89  Identities=20%  Similarity=0.287  Sum_probs=82.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.|.|.+.|.|+|||+.|..+.++.+...++...|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus         8 p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   87 (97)
T d1koaa1           8 PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV   87 (97)
T ss_dssp             CCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEE
Confidence            67889999999999999999999999999999999988888888788888999999999999999999999999999999


Q ss_pred             EEEEecCCC
Q psy12425         82 TINITGLPG   90 (591)
Q Consensus        82 ~l~v~~~p~   90 (591)
                      .|.|...+.
T Consensus        88 ~l~V~~~~~   96 (97)
T d1koaa1          88 FLNVTRHSE   96 (97)
T ss_dssp             CCEEECSCC
T ss_pred             EEEEeecCC
Confidence            999986554

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.7e-18  Score=122.68  Aligned_cols=94  Identities=30%  Similarity=0.484  Sum_probs=82.9

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec--eeeeeEEEEcCcccCceEEEEEEEEc
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAEN  558 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~Y~~~v~A~n  558 (591)
                      ||++|.++.+..++.+++.|+|.+|..+++.++++|.|+++..+...|....  ....+.+++.+|.+++.|.|+|+|.|
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~n   80 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVN   80 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEE
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEEC
Confidence            6889999999999999999999998888888999999999999888998763  44667899999999999999999999


Q ss_pred             CCcCCCCCCCcceEEe
Q psy12425        559 VYGRSDPSTTSDLITT  574 (591)
Q Consensus       559 ~~G~~~~s~~~~~~~t  574 (591)
                      .+|.|++|..+..++.
T Consensus        81 ~~G~s~~s~~~~~vtv   96 (98)
T d1x5ya1          81 IAGRSEPATLLQPVTI   96 (98)
T ss_dssp             TTEECCCCCCSSCBCC
T ss_pred             CCcCCCCcCCCCCEEe
Confidence            9999998877655443

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.74  E-value=1.7e-18  Score=122.06  Aligned_cols=85  Identities=24%  Similarity=0.421  Sum_probs=80.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |+++.+.+|+++.|.|.+.|.|.|.+.|++||..+..+.++++...+...+|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus         6 P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   85 (91)
T d1tnna_           6 PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEF   85 (91)
T ss_dssp             CCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEE
T ss_pred             CcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEE
Confidence            78999999999999999999999999999999999988888888888889999999999999999999999999998888


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .|.|.
T Consensus        86 ~l~V~   90 (91)
T d1tnna_          86 TLTIQ   90 (91)
T ss_dssp             EEECC
T ss_pred             EEEEE
Confidence            88775

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.73  E-value=8.2e-18  Score=119.15  Aligned_cols=85  Identities=14%  Similarity=0.262  Sum_probs=80.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      ++++.+.+|+++.|.|.+.|.|.|.+.|+||+..+..+.++.+...++..+|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus         9 ~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~   88 (93)
T d1wiua_           9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIF   88 (93)
T ss_dssp             CCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEE
Confidence            56899999999999999999999999999999999999889888888889999999999999999999999999999988


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .|.|.
T Consensus        89 ~l~V~   93 (93)
T d1wiua_          89 EVIVQ   93 (93)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88873

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.73  E-value=2.6e-17  Score=118.83  Aligned_cols=86  Identities=20%  Similarity=0.225  Sum_probs=78.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeC-CeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLD-DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |.++.+.+|+++.|.|.+.|.|.|.|.|+|||..|..+.++++...+ ...+|.|.+++.+|.|.|+|.|.|..|..+.+
T Consensus        15 ~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   94 (102)
T d1fhga_          15 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT   94 (102)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEE
Confidence            67889999999999999999999999999999999999888887654 46789999999999999999999999999999


Q ss_pred             EEEEEec
Q psy12425         81 FTINITG   87 (591)
Q Consensus        81 ~~l~v~~   87 (591)
                      +.|.|..
T Consensus        95 ~~L~V~s  101 (102)
T d1fhga_          95 AELLVET  101 (102)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            9998864

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.72  E-value=5.7e-17  Score=116.02  Aligned_cols=86  Identities=19%  Similarity=0.288  Sum_probs=77.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEE-EeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFT-VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |.++.+.+|+++.|.|.+.|.|.|.+.|+||+..|..+.+..+. ..++.++|.|.++...|+|.|+|.|.|..|..+..
T Consensus        11 ~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   90 (98)
T d1g1ca_          11 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH   90 (98)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEE
Confidence            56789999999999999999999999999999999888775544 45667899999999999999999999999999999


Q ss_pred             EEEEEec
Q psy12425         81 FTINITG   87 (591)
Q Consensus        81 ~~l~v~~   87 (591)
                      +.|.|..
T Consensus        91 ~~L~V~~   97 (98)
T d1g1ca_          91 AFLLVQA   97 (98)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            9998864

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.2e-17  Score=115.84  Aligned_cols=92  Identities=32%  Similarity=0.443  Sum_probs=85.8

Q ss_pred             cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      ....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+...+....|.|.++...|+|.|+|.|.|..|..+.++.
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   87 (101)
T d2cqva1           8 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVN   87 (101)
T ss_dssp             CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEE
T ss_pred             CcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEE
Confidence            44667899999999999999999999999999999888999888888899999999999999999999999999999999


Q ss_pred             EEecCCCCCCCC
Q psy12425        476 IQISDRPDPPQF  487 (591)
Q Consensus       476 ~~v~~~p~~p~~  487 (591)
                      |.|.++|++|..
T Consensus        88 l~V~~~P~pP~g   99 (101)
T d2cqva1          88 LTVVDKPDPPAG   99 (101)
T ss_dssp             EEEECSCSCCCC
T ss_pred             EEEEecCCCcCC
Confidence            999999998864

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=3.1e-17  Score=114.41  Aligned_cols=81  Identities=16%  Similarity=0.238  Sum_probs=73.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      |.++.+.+|+++.|.|.+.|.|.|.+.|+|||..|..+.++.+.  .  ..|.|.++..+|+|.|+|.|.|..|....++
T Consensus         8 ~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~--~--~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   83 (89)
T d1cs6a4           8 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS--G--GELRFSKLVLEDSGMYQCVAENKHGTVYASA   83 (89)
T ss_dssp             CCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE--T--TEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee--e--eeEEEEeecccCCEEEEEEEEeCCCEEEEEE
Confidence            67899999999999999999999999999999999888776653  2  3799999999999999999999999998888


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .|.|.
T Consensus        84 ~l~V~   88 (89)
T d1cs6a4          84 ELTVQ   88 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88885

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.3e-17  Score=114.07  Aligned_cols=93  Identities=29%  Similarity=0.407  Sum_probs=79.2

Q ss_pred             CCCCCCCCeee-eecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        481 RPDPPQFPTVE-DIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       481 ~p~~p~~~~~~-~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      ||.+|..+.+. ..+.+++.|+|++|..++|.+|++|.|+++......|..........++|.+|.+++.|.|+|+|.|.
T Consensus         1 PP~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~   80 (97)
T d2crza1           1 PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANK   80 (97)
T ss_dssp             CCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEEESCSEEEEESCCTTCEEEECCEEECS
T ss_pred             CcCcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeecCCceEEEEcCCCCCEEEEEEEEEecC
Confidence            45555555554 35678999999999888888999999999998888898887777789999999999999999999999


Q ss_pred             CcCCCCCCCcceEE
Q psy12425        560 YGRSDPSTTSDLIT  573 (591)
Q Consensus       560 ~G~~~~s~~~~~~~  573 (591)
                      +|.|++|..+.+.|
T Consensus        81 ~G~s~~S~~~~~~T   94 (97)
T d2crza1          81 MGFGPFSEKCDITT   94 (97)
T ss_dssp             SCBCCCCCCEEEEC
T ss_pred             CeEcCCcCCCeEEe
Confidence            99999998876543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-16  Score=112.54  Aligned_cols=85  Identities=21%  Similarity=0.363  Sum_probs=74.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCC--eEEEEEcccCCCCceEEEEEEEcCCeee-E
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD--YIIIFIKEIRKEDAGDYTVNLSNSSGSV-S   78 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~   78 (591)
                      |.+++|.+|+++.|.|.+.|.|.+.+.|+|||..+....+..+.....  ...|.|.+++++|+|.|+|.|.|..|.. +
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            889999999999999999999999999999999998877666655444  3579999999999999999999999975 4


Q ss_pred             EEEEEEEe
Q psy12425         79 GTFTINIT   86 (591)
Q Consensus        79 ~~~~l~v~   86 (591)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            56888775

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.7e-17  Score=120.45  Aligned_cols=105  Identities=34%  Similarity=0.536  Sum_probs=87.3

Q ss_pred             EEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-CceEEec-eeeeeEEEEcCcccCceEEE
Q psy12425        475 KIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-SSWIRVG-NTRFTTMAITGLSPGHQYEF  552 (591)
Q Consensus       475 ~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~~-~~~~~~~~i~~l~~~~~Y~~  552 (591)
                      .+.+.+.|.+|.++.+..++.+++.|+|++|. +++.++.+|.|+++.... ..|.... ....+.++|.+|.|++.|.|
T Consensus         9 ~~~~~~~P~pP~~~~v~~~~~~sv~l~W~p~~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~f   87 (117)
T d1uema_           9 NYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLF   87 (117)
T ss_dssp             CCCSCCSCBCCCCCEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEE
T ss_pred             cceeCccCcCCCCCEEEEccCCEEEEEEECCC-cCCCCeEEEEEEEeccCCceeeEEeccccccccceECCCCCCCEEEE
Confidence            45667889999999999999999999999764 677789999998876554 4566653 44567899999999999999


Q ss_pred             EEEEEcCCcCCCCCCCcceEEecccccc
Q psy12425        553 RVYAENVYGRSDPSTTSDLITTYGELLS  580 (591)
Q Consensus       553 ~v~A~n~~G~~~~s~~~~~~~t~~~~p~  580 (591)
                      +|+|.|..|.|++|..+..++|++++|.
T Consensus        88 rV~A~N~~G~s~~S~~s~~v~t~~~~Ps  115 (117)
T d1uema_          88 MVRAINPQGLSDPSPMSDPVRTQDSGPS  115 (117)
T ss_dssp             EEEEEETTEEEEECCCCCCEECCCSSCC
T ss_pred             EEEEEeCCcCCCCcCCCcCEEeCCCCcC
Confidence            9999999999999988776778776664

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.66  E-value=2e-16  Score=112.89  Aligned_cols=94  Identities=30%  Similarity=0.462  Sum_probs=86.2

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      |.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+..++..+.|.|.++...|+|.|+|.|.|..|
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   81 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG   81 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCC
Confidence            77888888899999999999999999999999999999999888888888888888999999999999999999999999


Q ss_pred             ceeeeeEEEEecCC
Q psy12425        373 VKSTKAELIIMTAP  386 (591)
Q Consensus       373 ~~~~~~~l~v~~~p  386 (591)
                      .....+.|.|...+
T Consensus        82 ~~~~~~~l~V~~~~   95 (97)
T d1koaa1          82 TKEEIVFLNVTRHS   95 (97)
T ss_dssp             EEEEEECCEEECSC
T ss_pred             EEEEEEEEEEeecC
Confidence            99888888886543

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.66  E-value=4e-16  Score=108.80  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=68.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      ++.+.+.+|+++.|.|.+.|.|.|.|.|+|||..|..+ ++.+  .++  .|.|.+++..|+|.|+|.|.|..|.....+
T Consensus        10 ~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~--~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~   84 (89)
T d1biha4          10 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV--TDS--GLVIKGVKNGDKGYYGCRATNEHGDKYFET   84 (89)
T ss_dssp             CSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE--ETT--EEEESSCCSTTCEEEEEEEEETTEEEEEEE
T ss_pred             CCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEE--eee--eEEECCCChhhCEEEEEEEEECCCEEEEEE
Confidence            35678999999999999999999999999999999654 4433  333  699999999999999999999999998888


Q ss_pred             EEEE
Q psy12425         82 TINI   85 (591)
Q Consensus        82 ~l~v   85 (591)
                      .|.|
T Consensus        85 ~l~V   88 (89)
T d1biha4          85 LVQV   88 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8877

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.66  E-value=5.1e-16  Score=109.72  Aligned_cols=91  Identities=20%  Similarity=0.349  Sum_probs=84.6

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCC
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      +|.+..++.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+...+...+|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            57888888889999999999999999999999999999999988888888888888999999999999999999999999


Q ss_pred             cceeeeeEEEE
Q psy12425        372 GVKSTKAELII  382 (591)
Q Consensus       372 g~~~~~~~l~v  382 (591)
                      |..+..+.|.|
T Consensus        82 G~~~~~~~l~V   92 (93)
T d1wiua_          82 GEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            99988888776

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.6e-16  Score=116.00  Aligned_cols=101  Identities=24%  Similarity=0.516  Sum_probs=81.3

Q ss_pred             EEEEecCCCCCCCCCeee--eecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCce
Q psy12425        474 VKIQISDRPDPPQFPTVE--DIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQ  549 (591)
Q Consensus       474 ~~~~v~~~p~~p~~~~~~--~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~  549 (591)
                      +.|.+.+.|.+|..+.+.  ..+.+++.|+|.+|. +++++|.+|.|+|+..+...|...  .....+.++|.+|.+++.
T Consensus         3 ~~l~v~~~P~~P~~p~~~~~~~~~~sv~l~W~~P~-~~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   81 (108)
T d1wf5a1           3 AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARS   81 (108)
T ss_dssp             CCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCCC-CCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCE
T ss_pred             cccEEecCCCCCCCCEEEEEeccCCEEEEEEECCC-CCCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCCE
Confidence            456788899999887654  467889999999874 677799999999997665434333  234567899999999999


Q ss_pred             EEEEEEEEcCCcCCCCCCCcceEEec
Q psy12425        550 YEFRVYAENVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       550 Y~~~v~A~n~~G~~~~s~~~~~~~t~  575 (591)
                      |.|+|+|.|.+|.|++|..+..++++
T Consensus        82 Y~frV~A~N~~G~s~~S~~~~~~t~P  107 (108)
T d1wf5a1          82 YQFRLCAVNDVGKGQFSKDTERVSLP  107 (108)
T ss_dssp             EEEEEEEEESSCEEEECCCCSCEECC
T ss_pred             EEEEEEEEcCCcCCCCcCCcCCEECC
Confidence            99999999999999999887776654

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.65  E-value=1.5e-16  Score=113.27  Aligned_cols=83  Identities=19%  Similarity=0.400  Sum_probs=71.3

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCcee-EEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFK-FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      ...|.+|+++.|.|.+.|.|.|.+.|+|||..+....+.. .....+..+|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   93 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   93 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            3568899999999999999999999999999997764432 333444568999999999999999999999999999898


Q ss_pred             EEEe
Q psy12425         83 INIT   86 (591)
Q Consensus        83 l~v~   86 (591)
                      |.|.
T Consensus        94 l~Vl   97 (97)
T d3dara1          94 LDVV   97 (97)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8874

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.6e-16  Score=112.37  Aligned_cols=84  Identities=18%  Similarity=0.257  Sum_probs=71.6

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCc--eeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDR--FKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      ++++.+|+++.|.|.+.|.|.|.|.|+|+|..+.....  ..........+|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus        14 ~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   93 (100)
T d1qz1a3          14 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI   93 (100)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEE
Confidence            35678899999999999999999999999999865532  3344455567999999999999999999999999999999


Q ss_pred             EEEEec
Q psy12425         82 TINITG   87 (591)
Q Consensus        82 ~l~v~~   87 (591)
                      .|.|..
T Consensus        94 ~l~V~~   99 (100)
T d1qz1a3          94 HLKVFA   99 (100)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            999875

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.64  E-value=3e-16  Score=111.74  Aligned_cols=86  Identities=20%  Similarity=0.279  Sum_probs=72.4

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEE--eCCeEEEEEcccCCCCceEEEEEEEcCCeee-
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV--LDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-   77 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-   77 (591)
                      +++++.+.+|+++.|.|.+.|.|.+.+.|+|+|..+....+.++..  .....+|.|.+++++|+|.|+|.|.|..|.. 
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            3678999999999999999999999999999999997665544432  3334689999999999999999999999976 


Q ss_pred             EEEEEEEEe
Q psy12425         78 SGTFTINIT   86 (591)
Q Consensus        78 ~~~~~l~v~   86 (591)
                      +.++.|.|.
T Consensus        89 s~s~~L~Vl   97 (97)
T d1biha3          89 KHSLKLTVV   97 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEC
Confidence            456888874

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.64  E-value=3.7e-16  Score=112.55  Aligned_cols=96  Identities=26%  Similarity=0.348  Sum_probs=78.2

Q ss_pred             ecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceE-Ee--ceeeeeEEEEcCcccCceEEEEE
Q psy12425        478 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI-RV--GNTRFTTMAITGLSPGHQYEFRV  554 (591)
Q Consensus       478 v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~-~~--~~~~~~~~~i~~l~~~~~Y~~~v  554 (591)
                      |.+.|++|..+.+. ...+++.|+|++|. +++.++.+|.|+++......|. ..  ......++.+.+|.|++.|.|+|
T Consensus         2 V~dvP~~P~~~~v~-~~~~sv~lsW~pp~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV   79 (100)
T d1cfba1           2 VQDVPNAPKLTGIT-CQADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRV   79 (100)
T ss_dssp             CCCCCCCCEEEEEE-ECSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEE
T ss_pred             cccCCCcCcCcEEE-EcCCEEEEEEcCCc-ccccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEEE
Confidence            56889999999886 46789999999775 5677999999999876554443 22  23345688899999999999999


Q ss_pred             EEEcCCcCCCCCCCcceEEec
Q psy12425        555 YAENVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       555 ~A~n~~G~~~~s~~~~~~~t~  575 (591)
                      +|.|.+|.|++|..+..++|+
T Consensus        80 ~A~n~~G~g~~S~~s~~vtT~  100 (100)
T d1cfba1          80 IAFNKIGASPPSAHSDSCTTQ  100 (100)
T ss_dssp             EEEETTEECCCCCCCCCEEEC
T ss_pred             EEEeCCcCCCCcCCCcCEEeC
Confidence            999999999999988777763

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=3e-16  Score=110.35  Aligned_cols=85  Identities=20%  Similarity=0.276  Sum_probs=73.3

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      .|.+.++.+|+++.|.|.+.|.|.|.+.|+|++..+....+.++...++. +|.|.+++++|+|.|+|.|.|..|.....
T Consensus         7 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~   85 (92)
T d1epfa2           7 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILARGEINF   85 (92)
T ss_dssp             CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS-CEEETTCCGGGCEEEEEEEEEGGGTEEEE
T ss_pred             cCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeee-eEEECCCCHHhCEEEEEEEEECcCCEEEE
Confidence            38899999999999999999999999999999999988876666655544 69999999999999999999988777666


Q ss_pred             EEEEEe
Q psy12425         81 FTINIT   86 (591)
Q Consensus        81 ~~l~v~   86 (591)
                      ..+.|.
T Consensus        86 ~~i~Vi   91 (92)
T d1epfa2          86 KDIQVI   91 (92)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666653

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1e-15  Score=111.41  Aligned_cols=95  Identities=31%  Similarity=0.499  Sum_probs=78.6

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-CceEEe---ceeeeeEEEEcCcccCceEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-SSWIRV---GNTRFTTMAITGLSPGHQYEFRVY  555 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~---~~~~~~~~~i~~l~~~~~Y~~~v~  555 (591)
                      .+|.+|..+.+..++.+++.|+|.++ .+++.+|.+|.|+|+.... ..|...   .......+.+.+|.+++.|.|+|+
T Consensus         9 ~pP~~P~~~~v~~~~~~sv~l~W~p~-~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~   87 (108)
T d1x4za1           9 SPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVR   87 (108)
T ss_dssp             CCCCCCCCCEEEECCSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEE
T ss_pred             CCCccCCCCEEEEccCCEEEEEEECC-CCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEEE
Confidence            57899999999999999999999865 5778899999999987554 455544   233556899999999999999999


Q ss_pred             EEcCCcCCCCCCCcceEEec
Q psy12425        556 AENVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       556 A~n~~G~~~~s~~~~~~~t~  575 (591)
                      |.|.+|.|++|.++..+++.
T Consensus        88 A~N~~G~s~~S~pS~p~~~~  107 (108)
T d1x4za1          88 ALNMLGESEPSAPSRPYVVS  107 (108)
T ss_dssp             EEETTEECCCCCCCCCEECC
T ss_pred             EECCCcCCCCCCCCCCEEec
Confidence            99999999999887665543

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7e-16  Score=106.18  Aligned_cols=77  Identities=9%  Similarity=0.100  Sum_probs=67.2

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      .+..|.+|++++|.|.+.|.|.|.|+|++++..+...          ...|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~----------~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~   76 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG----------GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID   76 (84)
T ss_dssp             CSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE----------SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEECCCeEEEEEEeEcCCchheEEEeecccceee----------eeeeeeeecccccccEEEEEEEeCCCEEEEEEE
Confidence            3567999999999999999999999999987644322          227899999999999999999999999999999


Q ss_pred             EEEecCC
Q psy12425         83 INITGLP   89 (591)
Q Consensus        83 l~v~~~p   89 (591)
                      |.|...|
T Consensus        77 v~V~~~~   83 (84)
T d2nxyb2          77 IVVLAFQ   83 (84)
T ss_dssp             ECEECCC
T ss_pred             EEEEecC
Confidence            9998765

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.63  E-value=1.9e-15  Score=108.89  Aligned_cols=93  Identities=27%  Similarity=0.548  Sum_probs=84.4

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeC-CeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEG-DTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+...+ +.++|.|.++...|.|.|+|.|.|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            4688888888999999999999999999999999999999999988888876554 467899999999999999999999


Q ss_pred             CCcceeeeeEEEEe
Q psy12425        370 KGGVKSTKAELIIM  383 (591)
Q Consensus       370 ~~g~~~~~~~l~v~  383 (591)
                      ..|....++.|.|.
T Consensus        87 ~~G~~~~~~~L~V~  100 (102)
T d1fhga_          87 SLGEATCTAELLVE  100 (102)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99999888888875

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.63  E-value=2e-15  Score=107.84  Aligned_cols=94  Identities=28%  Similarity=0.490  Sum_probs=84.0

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEE-EeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.+.... ..++.++|.|.++...|+|.|+|.|.|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            3688888888999999999999999999999999999999999887775544 556778999999999999999999999


Q ss_pred             CCcceeeeeEEEEec
Q psy12425        370 KGGVKSTKAELIIMT  384 (591)
Q Consensus       370 ~~g~~~~~~~l~v~~  384 (591)
                      ..|.....+.|.|..
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999998888888864

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.1e-16  Score=114.09  Aligned_cols=97  Identities=39%  Similarity=0.672  Sum_probs=83.3

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      .||++|..+.+..++.+++.|+|++|..++|..+..|.++++......|...  .......+++.+|.+++.|.|+|+|.
T Consensus         1 ~Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~   80 (104)
T d1bpva_           1 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAK   80 (104)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEE
T ss_pred             CCCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEE
Confidence            4789999999999999999999999988888899999999998887777765  34566789999999999999999999


Q ss_pred             cCCcC-CCCCCCcceEEecc
Q psy12425        558 NVYGR-SDPSTTSDLITTYG  576 (591)
Q Consensus       558 n~~G~-~~~s~~~~~~~t~~  576 (591)
                      |.+|. |++|..+..++++.
T Consensus        81 n~~G~~s~~S~~s~~vt~~d  100 (104)
T d1bpva_          81 NAAGAISPPSEPSDAITCRD  100 (104)
T ss_dssp             CTTSCEEEEEEEEEEECSCH
T ss_pred             ECCCCCCCCcCCCCCEEeCC
Confidence            99997 77777766665543

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=8.6e-16  Score=107.81  Aligned_cols=80  Identities=21%  Similarity=0.254  Sum_probs=67.6

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      +|.++.+.+|+++.|.|.+.|.|.|.|.|+|++.......      .....+|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus        11 ~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   84 (91)
T d1cs6a3          11 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ   84 (91)
T ss_dssp             CCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe------eeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEE
Confidence            4789999999999999999999999999999765432221      1123489999999999999999999999999888


Q ss_pred             EEEEEe
Q psy12425         81 FTINIT   86 (591)
Q Consensus        81 ~~l~v~   86 (591)
                      +.|.|.
T Consensus        85 ~~l~V~   90 (91)
T d1cs6a3          85 GRIIIH   90 (91)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888875

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.6e-15  Score=109.91  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=78.0

Q ss_pred             CCceeeeecCCeEEEEE---EeccCCCceEEEEECCEEeecCCceeEEEeCC-------eEEEEEcccCCCCceEEEEEE
Q psy12425          1 MPNALYIPEGDNTKVKI---FYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD-------YIIIFIKEIRKEDAGDYTVNL   70 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C---~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~g~Y~c~~   70 (591)
                      ||..+.+.+|..+.+.|   .+.|.|.|.+.|+|||+.|..+.+........       ...|.|.++..+|+|.|+|.|
T Consensus         3 ~p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A   82 (107)
T d1he7a_           3 MPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA   82 (107)
T ss_dssp             CCCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEE
T ss_pred             CCCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEE
Confidence            68899998888888776   78999999999999999998877666554322       267999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEecCCC
Q psy12425         71 SNSSGSVSGTFTINITGLPG   90 (591)
Q Consensus        71 ~n~~g~~~~~~~l~v~~~p~   90 (591)
                      .|..|..+.++.|.|..+|.
T Consensus        83 ~N~~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          83 ANPFGQASASIMAAFMDNPF  102 (107)
T ss_dssp             EETTEEEEEEEEECCCSCTT
T ss_pred             EeCCCEEEEEEEEEEEcCCC
Confidence            99999999999999998873

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-15  Score=109.42  Aligned_cols=92  Identities=25%  Similarity=0.384  Sum_probs=79.5

Q ss_pred             CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe-ceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       482 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      |.+|..+.+..++.+++.|+|++|..+++..+..|.++++......|... .......++|.+|.+++.|.|+|+|.|..
T Consensus         1 P~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~n~~   80 (96)
T d1x5xa1           1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSE   80 (96)
T ss_dssp             CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEECSS
T ss_pred             CccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEeecCCCCEEEECCCCCCCEEEEEEEEEcCC
Confidence            67889999999999999999999888888889999999987776665444 45666789999999999999999999999


Q ss_pred             cCCCCCCCcceEE
Q psy12425        561 GRSDPSTTSDLIT  573 (591)
Q Consensus       561 G~~~~s~~~~~~~  573 (591)
                      |.|++|....+.|
T Consensus        81 G~s~~S~~~~~~T   93 (96)
T d1x5xa1          81 GKSNPSEVVEFTT   93 (96)
T ss_dssp             CEEEECCCEEEEC
T ss_pred             cEeCCCCCEEEEe
Confidence            9999998876533

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.1e-15  Score=104.15  Aligned_cols=81  Identities=11%  Similarity=0.055  Sum_probs=69.5

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFT   82 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~   82 (591)
                      ..+.+.+|+++.|.|.+.|.|.|.+.|++++..+...   .........+|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~   85 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS---EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccceee---eeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEE
Confidence            4567789999999999999999999999988765433   2334456679999999999999999999999999999999


Q ss_pred             EEEe
Q psy12425         83 INIT   86 (591)
Q Consensus        83 l~v~   86 (591)
                      |.|.
T Consensus        86 v~V~   89 (90)
T d1vcaa2          86 VEIY   89 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9885

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-15  Score=116.54  Aligned_cols=87  Identities=22%  Similarity=0.370  Sum_probs=75.5

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeec-----------------------------CCceeEEEeCCeE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQS-----------------------------DDRFKFTVLDDYI   51 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~-----------------------------~~~~~~~~~~~~~   51 (591)
                      +|+.++|.+|++++|.|.+.|.|.|.+.|+|++..+..                             ..++.+....+.+
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   94 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS   94 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence            36789999999999999999999999999998754321                             2345667777888


Q ss_pred             EEEEcccCCCCceEEEEEEEcCCeeeEEEEEEEEec
Q psy12425         52 IIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITG   87 (591)
Q Consensus        52 ~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~~   87 (591)
                      +|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus        95 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          95 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             EEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             EEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            999999999999999999999999999999998864

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.60  E-value=1.8e-15  Score=105.29  Aligned_cols=87  Identities=24%  Similarity=0.489  Sum_probs=77.9

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      |.|+..+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+. .+   +|.|.++..+|+|.|+|.|.|..|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~-~~---~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS-GG---ELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE-TT---EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee-ee---eEEEEeecccCCEEEEEEEEeCCC
Confidence            67888888999999999999999999999999999999999888777663 22   799999999999999999999999


Q ss_pred             ceeeeeEEEEe
Q psy12425        373 VKSTKAELIIM  383 (591)
Q Consensus       373 ~~~~~~~l~v~  383 (591)
                      .....+.|.|.
T Consensus        78 ~~~~~~~l~V~   88 (89)
T d1cs6a4          78 TVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            98888888875

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-15  Score=108.97  Aligned_cols=92  Identities=25%  Similarity=0.333  Sum_probs=75.5

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEec-----eeeeeEEEEcCcccCceEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG-----NTRFTTMAITGLSPGHQYEFRV  554 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~Y~~~v  554 (591)
                      +.|++|..+.+ ....+++.|+|++|..+||.+|.+|.|+|+......|....     ......+.|.+|.+++.|.|+|
T Consensus         1 DvP~~P~~~~~-~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV   79 (101)
T d2haza1           1 DTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL   79 (101)
T ss_dssp             CCCCCCEEEEE-EECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEE
T ss_pred             CcCcCCccCEE-EeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEE
Confidence            45788865544 45778999999999888888999999999988877765541     2344689999999999999999


Q ss_pred             EEEcCCcCCCCCCCcceE
Q psy12425        555 YAENVYGRSDPSTTSDLI  572 (591)
Q Consensus       555 ~A~n~~G~~~~s~~~~~~  572 (591)
                      +|.|.+|.|++|....+.
T Consensus        80 ~A~N~~G~g~~S~~~~~~   97 (101)
T d2haza1          80 AALNGKGLGEISAASEFK   97 (101)
T ss_dssp             EEEETTEECCCCCCEEEE
T ss_pred             EEEeCCcCcCCCCceeEE
Confidence            999999999999886553

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=9.2e-16  Score=114.64  Aligned_cols=100  Identities=20%  Similarity=0.226  Sum_probs=81.4

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEee----eCCCCceEEeceeeeeEEEEcCcccCceEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKR----EHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVY  555 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~----~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  555 (591)
                      .+|.+|..+.+..++.++|.|+|++|..+++..+.+|.++|+    ......|........+.++|.+|.|++.|.|+|+
T Consensus        14 ~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~   93 (120)
T d1wfua_          14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLK   93 (120)
T ss_dssp             CCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEEEEE
T ss_pred             cCCCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeeccccccEEeCCCCCCCcEeeEEEE
Confidence            467888888888899999999999988777777776666554    3455678777777778999999999999999999


Q ss_pred             EEcCCcCCCCCCCcceEEeccccc
Q psy12425        556 AENVYGRSDPSTTSDLITTYGELL  579 (591)
Q Consensus       556 A~n~~G~~~~s~~~~~~~t~~~~p  579 (591)
                      |.|.+|.|++|....+.|+.+.+|
T Consensus        94 A~n~~G~s~~S~~~~~~T~~~~pP  117 (120)
T d1wfua_          94 VTSPSGEYEYSPVVSVATTRESGP  117 (120)
T ss_dssp             EECSSSCEEECCCEEEECCCCCCC
T ss_pred             EEeCCcEeCCCCCEEEEeCCCCcC
Confidence            999999999998877655554443

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.59  E-value=4.2e-15  Score=109.18  Aligned_cols=86  Identities=19%  Similarity=0.198  Sum_probs=66.6

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeec----CCceeE-------E--EeCCeEEEEEcccCCCCceEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQS----DDRFKF-------T--VLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~----~~~~~~-------~--~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      +|+++++.+|+++.|.|.+.|.|.|.|.|+|++.....    ......       .  .......|.|.++..+|+|.|+
T Consensus        11 ~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   90 (109)
T d2fdbp2          11 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT   90 (109)
T ss_dssp             CSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEE
T ss_pred             CCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEE
Confidence            58999999999999999999999999999997643211    111111       1  1122368999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEe
Q psy12425         68 VNLSNSSGSVSGTFTINIT   86 (591)
Q Consensus        68 c~~~n~~g~~~~~~~l~v~   86 (591)
                      |.|.|..|....++.|.|.
T Consensus        91 C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          91 CLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             EEEECSSCEEEEEEEEEEC
T ss_pred             EEEEECCCEEEEEEEEEEC
Confidence            9999999999999998874

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-15  Score=104.17  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=65.2

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      +|.++++.+|+.+.|.|.+.|.|.|++.|+|+|..+.....             +.+++.+|+|.|+|.|.|..|..+..
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~~-------------~~~v~~~d~G~Y~C~A~N~~G~~~~~   76 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTRE   76 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-------------CEECCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeeee-------------eeccccCCCCEEEEEEEcCCCEEEEE
Confidence            47889999999999999999999999999999987765432             44678899999999999999999999


Q ss_pred             EEEEEec
Q psy12425         81 FTINITG   87 (591)
Q Consensus        81 ~~l~v~~   87 (591)
                      +.|.|..
T Consensus        77 ~~l~V~~   83 (84)
T d2oz4a3          77 VTVNVLS   83 (84)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9998864

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.7e-15  Score=103.81  Aligned_cols=91  Identities=27%  Similarity=0.281  Sum_probs=76.3

Q ss_pred             CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCc
Q psy12425        482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYG  561 (591)
Q Consensus       482 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G  561 (591)
                      |++|..+.+..++.+++.|+|++|.. ++..+++|.|+++......|. ......+.++|.+|.+++.|.|+|+|.|..|
T Consensus         1 P~~P~~~~v~~~s~~si~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   78 (93)
T d1x4xa1           1 PDQCKPPQVTCRSATCAQVNWEVPLS-NGTDVTEYRLEWGGVEGSMQI-CYCGPGLSYEIKGLSPATTYYCRVQALSVVG   78 (93)
T ss_dssp             CCCCCCCCCEEEETTEEEEECCCCSC-SSSCCCEEEEEEESSTTSCCE-EEEESCSEEEEESCCSSCEEEEEEEEECSSC
T ss_pred             CcCCCCCEEEEeCCCeEEEEEEeccc-CCCeeEEEEEEEccCCCcceE-eecCCccEEEEcccceeeEEEEEEEEEECCc
Confidence            67888889999999999999998874 456899999999987665554 4455667899999999999999999999999


Q ss_pred             CCCCCCCcceEEec
Q psy12425        562 RSDPSTTSDLITTY  575 (591)
Q Consensus       562 ~~~~s~~~~~~~t~  575 (591)
                      .|++|....+ +|+
T Consensus        79 ~s~~S~~~~~-~Tp   91 (93)
T d1x4xa1          79 AGPFSEVVAC-VTP   91 (93)
T ss_dssp             CCCBCCCEEE-ECC
T ss_pred             CcCCCCcEEE-EeC
Confidence            9999987654 444

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.58  E-value=1.6e-15  Score=106.57  Aligned_cols=87  Identities=28%  Similarity=0.469  Sum_probs=78.7

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceee
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST  376 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~  376 (591)
                      ..+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+...+...+|.|.++...|+|.|+|.|.|..|....
T Consensus         4 ~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   83 (91)
T d1tnna_           4 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEA   83 (91)
T ss_dssp             BCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCE
T ss_pred             eCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEE
Confidence            34567788999999999999999999999999999999888888888888899999999999999999999999999888


Q ss_pred             eeEEEEe
Q psy12425        377 KAELIIM  383 (591)
Q Consensus       377 ~~~l~v~  383 (591)
                      .+.|.|.
T Consensus        84 ~~~l~V~   90 (91)
T d1tnna_          84 EFTLTIQ   90 (91)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEE
Confidence            7777764

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.1e-14  Score=102.35  Aligned_cols=91  Identities=15%  Similarity=0.139  Sum_probs=75.1

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      .+|.+|.++++...+.+++.|+|.+|..+.+..++.|.+.+...+.. |....  ..+.++|.+|.|++.|.|+|+|.|.
T Consensus         1 a~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~-~~~~~--~~t~~~i~~L~p~t~Y~~rV~A~n~   77 (94)
T d1x5aa1           1 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEE-WHQMV--LEPRVLLTKLQPDTTYIVRVRTLTP   77 (94)
T ss_dssp             CCCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCE-EEEEE--SSSEEEEESCCSSCEEEEEEEEECS
T ss_pred             CcCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCce-EEEee--ccCEEEECCCCCCCEEEEEEEEEcC
Confidence            36889999999999999999999988666666778999999876543 33322  3468999999999999999999999


Q ss_pred             CcCCCCCCCcceEE
Q psy12425        560 YGRSDPSTTSDLIT  573 (591)
Q Consensus       560 ~G~~~~s~~~~~~~  573 (591)
                      .|.|++|....+.|
T Consensus        78 ~G~g~~S~~~~~~T   91 (94)
T d1x5aa1          78 LGPGPFSPDHEFRT   91 (94)
T ss_dssp             SSCCCCCCCEEEEC
T ss_pred             CcCcCCCCCEEEEe
Confidence            99999998765544

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.4e-15  Score=113.04  Aligned_cols=112  Identities=29%  Similarity=0.327  Sum_probs=91.1

Q ss_pred             EEEEecCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC--CceEEe-ceeeeeEEEEcCcccCceE
Q psy12425        474 VKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM--SSWIRV-GNTRFTTMAITGLSPGHQY  550 (591)
Q Consensus       474 ~~~~v~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~--~~~~~~-~~~~~~~~~i~~l~~~~~Y  550 (591)
                      ....+.+.|++|.++++..++.+++.|+|++|. +++..+..|.++++....  ..|... .......+.+.+|.+++.|
T Consensus         9 ~~~~v~d~P~~P~~~~v~~~~~~sv~l~W~~p~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y   87 (127)
T d1ueya_           9 TPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGD-DNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNY   87 (127)
T ss_dssp             CCCCCCCSCCCCEEEEEECCSSSCEEEEEECCC-CCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEE
T ss_pred             ccccccccCcCCCCcEEEEecCCeEEEEEeCCc-ccccceEeeeeeeccccccceeEEEEeecCCceEEEECCCccCCEE
Confidence            344566889999999999999999999999775 555688999999986643  333333 4455668999999999999


Q ss_pred             EEEEEEEcCCcCCCCCCCcceEEeccccccCCCCCc
Q psy12425        551 EFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPI  586 (591)
Q Consensus       551 ~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~~  586 (591)
                      .|+|+|.|..|.|.+|..+..+++.+..|..+|..+
T Consensus        88 ~frV~A~n~~G~s~~S~~s~~~~t~~~~P~~~P~~~  123 (127)
T d1ueya_          88 SFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSG  123 (127)
T ss_dssp             CCEEEEEESSCBCCCCSCCCCEECCCSSCSSCSSCC
T ss_pred             EEEEEEEcCCcCcCCcCCcccEEcCCCCCCCCCCCC
Confidence            999999999999999988888888888887777543

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.3e-15  Score=106.68  Aligned_cols=88  Identities=15%  Similarity=0.241  Sum_probs=72.2

Q ss_pred             eeeecCCe---EEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCC----eEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425          5 LYIPEGDN---TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDD----YIIIFIKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         5 ~~v~~G~~---~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      +.+.+++.   ..|.|.+.|.|.|++.|+|||+.|..+.+..+....+    ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus         9 ~~~~~~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   88 (105)
T d1wwca_           9 VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA   88 (105)
T ss_dssp             CCCCCCCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEE
T ss_pred             EEeCCCEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEE
Confidence            34445555   4466789999999999999999998887666543222    3579999999999999999999999999


Q ss_pred             EEEEEEEEecCCCCC
Q psy12425         78 SGTFTINITGLPGPP   92 (591)
Q Consensus        78 ~~~~~l~v~~~p~~p   92 (591)
                      +.++.|.|...|.++
T Consensus        89 ~~~~~v~V~~~P~P~  103 (105)
T d1wwca_          89 NQTINGHFLKEPFPV  103 (105)
T ss_dssp             EEEEEECCSCCCCCS
T ss_pred             EEEEEEEEEeCCCCC
Confidence            999999999888765

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.7e-15  Score=104.48  Aligned_cols=80  Identities=16%  Similarity=0.163  Sum_probs=67.7

Q ss_pred             CceeeeecCCeEEEEEEec-cCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYA-GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |+.+.+.+|+++.|.|.+. +.|.+.+.|+|++..+.....   ...+  .+|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~   83 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA---MDFN--GILTIRNVQPSDAGTYVCTGSNMFAMDQGT   83 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE---EEET--TEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc---Eeec--eEEEEecCCcccCEEEEEEEEECCCEEEEE
Confidence            6788999999999999997 578899999999887755532   1222  379999999999999999999999999888


Q ss_pred             EEEEEe
Q psy12425         81 FTINIT   86 (591)
Q Consensus        81 ~~l~v~   86 (591)
                      +.|.|.
T Consensus        84 ~~l~V~   89 (89)
T d1gl4b_          84 ATLHVQ   89 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888873

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.1e-15  Score=106.24  Aligned_cols=93  Identities=23%  Similarity=0.312  Sum_probs=77.9

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      ..|.+|.++.+...+.+++.|+|++|...+ +.+.+|.|.|+..+...|... ......+.|.+|.|++.|.|+|+|.|.
T Consensus         9 ~vP~~P~~l~v~~~s~~si~l~W~~P~~~~-g~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~   86 (103)
T d1x5ga1           9 QLPGPAPNLRAYAASPTSITVTWETPVSGN-GEIQNYKLYYMEKGTDKEQDV-DVSSHSYTINGLKKYTEYSFRVVAYNK   86 (103)
T ss_dssp             SCCCCCSSCEEEEEETTEEEEECCCCSCCS-SCCSEEEEEEEETTCCCCCCE-EECSSEEEECSCCTTCEEEEEEEEECS
T ss_pred             CCcccCCCcEEEEccCCEEEEEEECCcCCC-ccEEEEEEEEEeCCCceeEEE-eccccEEecCCCCCCCEEEEEEEEEcC
Confidence            458899999999999999999999887544 589999999998877666554 344568999999999999999999999


Q ss_pred             CcCCCCCCCcceEEec
Q psy12425        560 YGRSDPSTTSDLITTY  575 (591)
Q Consensus       560 ~G~~~~s~~~~~~~t~  575 (591)
                      .|.|.+|....+ +|.
T Consensus        87 ~G~g~~S~~v~v-~T~  101 (103)
T d1x5ga1          87 HGPGVSTPDVAV-RTL  101 (103)
T ss_dssp             SCCCCBCCCCCE-ECC
T ss_pred             CcCcCCCCCEEE-EcC
Confidence            999999987654 443

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.5e-15  Score=110.80  Aligned_cols=90  Identities=11%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             CceeeeecCCeEEEEEEeccCC---CceEEEEECCEEee---cCCceeEEEe------CCeEEEEEcccCCCCceEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ---PMEVSLTKNGRVVQ---SDDRFKFTVL------DDYIIIFIKEIRKEDAGDYTVN   69 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p---~~~v~W~~~~~~~~---~~~~~~~~~~------~~~~~l~i~~~~~~d~g~Y~c~   69 (591)
                      |++++|.+|++++|.|.+.|.|   .|.|.|+|++....   ...++++...      .....|.|.+++++|+|.|+|.
T Consensus         7 P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (113)
T d2dava1           7 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCE   86 (113)
T ss_dssp             CCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEE
T ss_pred             CceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEE
Confidence            7899999999999999999988   57999999875431   1223332211      1135799999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEecCCCC
Q psy12425         70 LSNSSGSVSGTFTINITGLPGP   91 (591)
Q Consensus        70 ~~n~~g~~~~~~~l~v~~~p~~   91 (591)
                      |.|..|..+..+.|.|...+..
T Consensus        87 a~N~~G~~~~~~~L~V~~~~~~  108 (113)
T d2dava1          87 VTYKDKFDSCSFDLEVHESTGT  108 (113)
T ss_dssp             EECSSCEEEECCEEEEECCCCS
T ss_pred             EEeCCCEEEEEEEEEEEcCCCc
Confidence            9999999999999999876654

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.8e-15  Score=101.30  Aligned_cols=79  Identities=10%  Similarity=0.061  Sum_probs=66.8

Q ss_pred             ceeeeecCCeEEEEEEec-cCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYA-GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      ..+.+.+|+++.|.|.+. |.|.+.|.|++++..+.     .....+....|+|.+++.+|+|.|+|.|.|..|..+.++
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~   85 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG-----AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV   85 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC-----CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee-----eeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEE
Confidence            467899999999999985 78999999999776542     223345667999999999999999999999999999999


Q ss_pred             EEEEe
Q psy12425         82 TINIT   86 (591)
Q Consensus        82 ~l~v~   86 (591)
                      .|.|.
T Consensus        86 ~l~Vy   90 (90)
T d1gsma1          86 QLLVY   90 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            88874

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-14  Score=101.04  Aligned_cols=80  Identities=16%  Similarity=0.272  Sum_probs=67.0

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCc--eeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDR--FKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      ++++++.+|+++.|.|.+. .|.+.+.|+|+|..+..+.+  +.+...+..++|.|.+++++|+|.|+|.|.|.    ..
T Consensus         7 l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~   81 (90)
T d1x44a1           7 LEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG----QS   81 (90)
T ss_dssp             CCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE----EE
T ss_pred             CCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc----eE
Confidence            4688999999999999994 78899999999999877644  56666777889999999999999999999774    34


Q ss_pred             EEEEEEe
Q psy12425         80 TFTINIT   86 (591)
Q Consensus        80 ~~~l~v~   86 (591)
                      +..|.|.
T Consensus        82 ~a~l~V~   88 (90)
T d1x44a1          82 SAKLSVD   88 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4566664

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.5e-15  Score=101.30  Aligned_cols=75  Identities=12%  Similarity=0.138  Sum_probs=61.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-E
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS-G   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-~   79 (591)
                      |.++.+.+|+++.|.|.+.|.|.| +|+|+|||..+.....       .  .+.|.....+|+|.|+|.|.|..|... .
T Consensus         8 P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~-------~--~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~   78 (85)
T d1rhfa2           8 PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------S--PSVLNVTGVTQSTMFSCEAHNLKGLASSR   78 (85)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------S--SEEEEECCCSSCEEEEEEEEETTEEEECC
T ss_pred             CCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC-------c--ceEEecCCccccEEEEEEEEcCCCcEEEE
Confidence            778999999999999999999987 9999999999865532       1  234555666899999999999999763 4


Q ss_pred             EEEEEE
Q psy12425         80 TFTINI   85 (591)
Q Consensus        80 ~~~l~v   85 (591)
                      .+.|.|
T Consensus        79 ~~~v~V   84 (85)
T d1rhfa2          79 TATVHL   84 (85)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            577766

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=2.4e-14  Score=101.85  Aligned_cols=85  Identities=24%  Similarity=0.306  Sum_probs=69.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCC-ceEEEEE-CCEEeec-CCceeEE-EeCCeEEEEEcccCCCCceEEEEEEEcCCeee
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQP-MEVSLTK-NGRVVQS-DDRFKFT-VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV   77 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~   77 (591)
                      |..++|.+|+++.|.|.+.|.|. +.|.|+| +|..+.. ..++.+. ..+...+|.|.+++.+|+|.|+|.|.|..|..
T Consensus         7 P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   86 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   86 (97)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             CCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcE
Confidence            78899999999999999999874 7999999 5555544 4555554 34556799999999999999999999999875


Q ss_pred             -EEEEEEEEe
Q psy12425         78 -SGTFTINIT   86 (591)
Q Consensus        78 -~~~~~l~v~   86 (591)
                       +.++.|.|.
T Consensus        87 ~~~tv~l~V~   96 (97)
T d1epfa1          87 SEATVNVKIF   96 (97)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             456888775

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-14  Score=105.75  Aligned_cols=87  Identities=16%  Similarity=0.177  Sum_probs=69.9

Q ss_pred             CceeeeecCCeEEEEEEeccCC---CceEEEEECCEEeec-C--CceeEEEe------CCeEEEEEcccCCCCceEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ---PMEVSLTKNGRVVQS-D--DRFKFTVL------DDYIIIFIKEIRKEDAGDYTVN   69 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p---~~~v~W~~~~~~~~~-~--~~~~~~~~------~~~~~l~i~~~~~~d~g~Y~c~   69 (591)
                      |+++++.+|++++|.|.+.|.|   .|.|.|+|++..... .  .++.....      ....+|.|.+++..|+|.|+|.
T Consensus        11 P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   90 (110)
T d2avga1          11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCE   90 (110)
T ss_dssp             CCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEE
T ss_pred             CCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEE
Confidence            7889999999999999999988   578999998754322 2  22222211      1236899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEecC
Q psy12425         70 LSNSSGSVSGTFTINITGL   88 (591)
Q Consensus        70 ~~n~~g~~~~~~~l~v~~~   88 (591)
                      |.|..|..+.++.|.|.+.
T Consensus        91 a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          91 VSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEETTEEEEEEEEEEEESC
T ss_pred             EEECCCeEEEEEEEEEEec
Confidence            9999999999999999763

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.7e-15  Score=106.20  Aligned_cols=94  Identities=34%  Similarity=0.468  Sum_probs=79.5

Q ss_pred             cCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCc-eEEeceeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS-WIRVGNTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       479 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      ..+|++|..+++...+.+++.|+|.+|. +++.++.+|.++++...... +..........+.+.+|.+++.|.|+|+|.
T Consensus         8 ~~~P~~P~~~~~~~~~~~sv~l~W~pp~-~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A~   86 (105)
T d1x3da1           8 SCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSAR   86 (105)
T ss_dssp             CSCCCCCCCCEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEECCEE
T ss_pred             CCCCcCCCCCEEEEccCCEEEEEEECCC-CCcCccEEEEEEEecCCCcceeEEEecCCccEEEecCCcCCcEEEEEEEEE
Confidence            3678999999999999999999999875 56679999999998665543 444566677899999999999999999999


Q ss_pred             cCCcCCCCCCCcceEE
Q psy12425        558 NVYGRSDPSTTSDLIT  573 (591)
Q Consensus       558 n~~G~~~~s~~~~~~~  573 (591)
                      |..|.|++|..+.+.|
T Consensus        87 N~~G~s~~S~~~~~~T  102 (105)
T d1x3da1          87 NDYGTSGFSEEVLYYT  102 (105)
T ss_dssp             ESSCBCCCCCCEEEEC
T ss_pred             CCCeEcCCCCcEEEEC
Confidence            9999999998875533

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.5e-14  Score=103.84  Aligned_cols=84  Identities=14%  Similarity=0.197  Sum_probs=72.5

Q ss_pred             eecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEe--C---CeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          7 IPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVL--D---DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         7 v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~---~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      ...+....|.|.+.|.|.|++.|+|||+.|..+.+..+...  .   ....|.|.+++..|+|.|+|.|.|..|..+..+
T Consensus        13 ~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   92 (103)
T d1wwbx_          13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEE
Confidence            45678888999999999999999999999988766655432  1   135799999999999999999999999999999


Q ss_pred             EEEEecCCC
Q psy12425         82 TINITGLPG   90 (591)
Q Consensus        82 ~l~v~~~p~   90 (591)
                      .|.|.+.|+
T Consensus        93 ~v~V~~~P~  101 (103)
T d1wwbx_          93 SAHFMGWPG  101 (103)
T ss_dssp             EECCSCCCC
T ss_pred             EEEEEeCCC
Confidence            999998875

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.5e-14  Score=101.94  Aligned_cols=81  Identities=17%  Similarity=0.305  Sum_probs=67.4

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC-CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSG   79 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~   79 (591)
                      |+..+.|.+|+++.|.|.+. .|.+.+.|+|||..|..+ .++.+...++.++|.|.++..+|+|.|+|.|.|.    ..
T Consensus        12 l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~----~~   86 (94)
T d1pd6a_          12 LEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE----KC   86 (94)
T ss_dssp             CCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE----EE
T ss_pred             CCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE----EE
Confidence            45567899999999999985 588999999999999765 5677888888899999999999999999999774    33


Q ss_pred             EEEEEEe
Q psy12425         80 TFTINIT   86 (591)
Q Consensus        80 ~~~l~v~   86 (591)
                      +..|.|.
T Consensus        87 s~~l~V~   93 (94)
T d1pd6a_          87 STELFVK   93 (94)
T ss_dssp             CCEEEEE
T ss_pred             EEEEEEE
Confidence            4555554

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.3e-14  Score=103.21  Aligned_cols=85  Identities=20%  Similarity=0.260  Sum_probs=71.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEe----e--cCCceeEEEeCCeEEEEEcccC-CCCceEEEEEEEcC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVV----Q--SDDRFKFTVLDDYIIIFIKEIR-KEDAGDYTVNLSNS   73 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~----~--~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~n~   73 (591)
                      |..+.+.+|+.+.|.|.+.|.|.+ .+.|+|++...    .  ...++.+...+..++|.|.++. .+|+|.|+|.|.|.
T Consensus         9 ~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~   88 (101)
T d3b5ha1           9 KSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS   88 (101)
T ss_dssp             CSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEET
T ss_pred             CCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEEC
Confidence            567889999999999999999877 79999976322    2  2345677778888999999998 57999999999999


Q ss_pred             CeeeEEEEEEEEe
Q psy12425         74 SGSVSGTFTINIT   86 (591)
Q Consensus        74 ~g~~~~~~~l~v~   86 (591)
                      .|..+..+.|.|.
T Consensus        89 ~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          89 KGSDQAIITLRVR  101 (101)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEC
Confidence            9999998888873

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.1e-15  Score=105.57  Aligned_cols=94  Identities=24%  Similarity=0.335  Sum_probs=77.1

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceE-EeceeeeeEEEEcCcccCceEEEEEEEEc
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI-RVGNTRFTTMAITGLSPGHQYEFRVYAEN  558 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n  558 (591)
                      .+|++|..+.+..++.+++.|+|++|...++ .+.+|+|.|+..+...+. .........++|.+|.+++.|.|+|+|.|
T Consensus         2 a~P~~p~~~~~~~~s~~si~v~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n   80 (98)
T d1x5la1           2 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRART   80 (98)
T ss_dssp             CCCCCCCCEECSCBCSSCEEEEECCCSCCCS-CCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEECEEEEE
T ss_pred             cCCCCCCceEEEeccCCEEEEEEECCCCCCC-CEEEEEEEeecccccceeeEEecCCceEEEECCCCCCCEEEEEEEEEc
Confidence            5788999999999999999999998875544 889999999876544332 22345567999999999999999999999


Q ss_pred             CCcCCCCCCCcceEEec
Q psy12425        559 VYGRSDPSTTSDLITTY  575 (591)
Q Consensus       559 ~~G~~~~s~~~~~~~t~  575 (591)
                      .+|.|++|....+ +|.
T Consensus        81 ~~G~g~~S~~v~~-~T~   96 (98)
T d1x5la1          81 SAGCGRFSQAMEV-ETG   96 (98)
T ss_dssp             TTEECCCCCCEEE-ECC
T ss_pred             CCCCcCCCCCEEE-EcC
Confidence            9999999988654 443

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=6.3e-15  Score=104.72  Aligned_cols=84  Identities=20%  Similarity=0.311  Sum_probs=71.5

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-EEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS-GTF   81 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-~~~   81 (591)
                      .+.+|.+|++++|.|.+.+ +++.+.|+|+|+.+....+..+..  +..+|.|.+++.+|.|.|+|.|.|..|... ..+
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~--~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~   87 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ--NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSI   87 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEET--TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCC
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccC--CceEEEEeccchhhceEEEEEEEeCCCCeEEEeE
Confidence            4577999999999999865 568999999999998887776543  345899999999999999999999998774 468


Q ss_pred             EEEEecCC
Q psy12425         82 TINITGLP   89 (591)
Q Consensus        82 ~l~v~~~p   89 (591)
                      .|.|...|
T Consensus        88 ~L~V~~~P   95 (96)
T d1l6za2          88 KLDIIFDP   95 (96)
T ss_dssp             EEEECCSC
T ss_pred             EEEEEcCC
Confidence            99998776

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.4e-15  Score=107.04  Aligned_cols=93  Identities=22%  Similarity=0.274  Sum_probs=79.3

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      ..|++|.++.+..++.+++.|+|++|..++++.+.+|.|.++..+...|...  .......++|.+|.|++.|.|+|+|.
T Consensus         9 ~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A~   88 (107)
T d1x5fa1           9 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQ   88 (107)
T ss_dssp             CCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEEE
Confidence            5789999999999999999999998876767789999999987766555443  45566899999999999999999999


Q ss_pred             cCCcCCCCCCCcceE
Q psy12425        558 NVYGRSDPSTTSDLI  572 (591)
Q Consensus       558 n~~G~~~~s~~~~~~  572 (591)
                      |..|.|++|....+.
T Consensus        89 n~~G~g~~S~~i~v~  103 (107)
T d1x5fa1          89 NKHGSGESSAPLRVE  103 (107)
T ss_dssp             CSSCEEEECCCEEEE
T ss_pred             eCCCCcCCCCCEEEE
Confidence            999999999876543

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.4e-15  Score=106.25  Aligned_cols=86  Identities=23%  Similarity=0.268  Sum_probs=72.6

Q ss_pred             CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe-ceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       482 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      |++|..+.+...+.+++.|+|++|. +++.+|.+|.|+|+..++..+... .......+.|.+|.+++.|.|+|+|.|.+
T Consensus         1 P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~I~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~   79 (93)
T d2vkwa2           1 PSAPKLEGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQ   79 (93)
T ss_dssp             CCCCEEEEEECTTSSCEEEEEECCC-CTTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCCccCEeEEcCCCEEEEEeeCCC-CCcCceEEEEEEeeecCcceeeeeeccCCceEEEEeccccceEEEEEEEEEcCC
Confidence            7889989999999999999999875 778899999999998765433322 34456789999999999999999999999


Q ss_pred             cCCCCCCC
Q psy12425        561 GRSDPSTT  568 (591)
Q Consensus       561 G~~~~s~~  568 (591)
                      |.|+++..
T Consensus        80 G~s~ps~~   87 (93)
T d2vkwa2          80 GKSKAAHF   87 (93)
T ss_dssp             EECCCEEE
T ss_pred             CCcCCEeE
Confidence            99999853

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.8e-15  Score=106.77  Aligned_cols=95  Identities=29%  Similarity=0.464  Sum_probs=77.7

Q ss_pred             CCCCCCCCCee-eeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-CceEEeceeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        480 DRPDPPQFPTV-EDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-SSWIRVGNTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       480 ~~p~~p~~~~~-~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      ++|++|..+.+ ..++.+++.|+|++|..+++..+..|.++++.... ..|........+.+.+.+|.+++.|.|+|+|.
T Consensus         9 ~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~   88 (107)
T d2crma1           9 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCI   88 (107)
T ss_dssp             CCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEEEE
T ss_pred             CCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeecCCccEEEEeccCCCCEEEEEEEEE
Confidence            56788877654 45788999999999888888889999999986654 44555556667889999999999999999999


Q ss_pred             cCCcCCCCCCCcceEEec
Q psy12425        558 NVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       558 n~~G~~~~s~~~~~~~t~  575 (591)
                      |..|.|++|....+ +|+
T Consensus        89 n~~G~s~~S~~v~v-~Tp  105 (107)
T d2crma1          89 SDGGQSAVSESLLV-QTP  105 (107)
T ss_dssp             ETTEECCCCCCCCC-CCC
T ss_pred             CCCcCcCCCCcEEE-ECC
Confidence            99999999987653 443

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.55  E-value=5.5e-15  Score=104.75  Aligned_cols=82  Identities=16%  Similarity=0.251  Sum_probs=66.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-E
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS-G   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-~   79 (591)
                      |.++.+.+|+++.|.|.+.|.|.+ .+.|++||..+....... ....+..+|.|.++..+|+|.|+|.|.|..|... .
T Consensus         9 p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~   87 (94)
T d1biha1           9 PAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNA-ALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR   87 (94)
T ss_dssp             CSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTE-EECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeeccee-eecccceEEEEeccChhcCeEEEEEEEeCCCEEEEE
Confidence            678999999999999999998865 799999999987664433 2334445899999999999999999999999764 3


Q ss_pred             EEEEE
Q psy12425         80 TFTIN   84 (591)
Q Consensus        80 ~~~l~   84 (591)
                      .+.|.
T Consensus        88 ~v~l~   92 (94)
T d1biha1          88 VISFR   92 (94)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            34444

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.54  E-value=1.1e-15  Score=106.28  Aligned_cols=81  Identities=7%  Similarity=0.136  Sum_probs=71.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF   81 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~   81 (591)
                      +.+++|.+|+++.|.|.+ +.|.+.+.|+|||+.+..+.++.+...++.++|.|.+++++|+|.|+|.|.|..+    ++
T Consensus         8 l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----sa   82 (89)
T d1tiua_           8 LYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS----AA   82 (89)
T ss_dssp             CCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC----CE
T ss_pred             CcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE----EE
Confidence            468999999999999998 5789999999999999999999999999999999999999999999999977543    45


Q ss_pred             EEEEec
Q psy12425         82 TINITG   87 (591)
Q Consensus        82 ~l~v~~   87 (591)
                      .|.|.+
T Consensus        83 ~l~V~e   88 (89)
T d1tiua_          83 NLKVKE   88 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            566643

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=3e-14  Score=103.64  Aligned_cols=91  Identities=27%  Similarity=0.424  Sum_probs=70.6

Q ss_pred             CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCC-CCceEEe-------------ceeeeeEEEEcCcccCce
Q psy12425        484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP-MSSWIRV-------------GNTRFTTMAITGLSPGHQ  549 (591)
Q Consensus       484 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~-~~~~~~~-------------~~~~~~~~~i~~l~~~~~  549 (591)
                      ||..+.+..++.+++.|+|.+|. ++|.+|++|.|+++... ...|...             .......++|.+|.|++.
T Consensus         2 PP~~p~v~~~~~~sv~l~W~~P~-~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   80 (107)
T d2ic2a1           2 PPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHT   80 (107)
T ss_dssp             CCCCCEEEECC---EEEEEEEEC-CSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEE
T ss_pred             cCcCCEEEEEECCEEEEEEEeCc-cccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcE
Confidence            46666788899999999999886 67789999999998654 3455433             234567899999999999


Q ss_pred             EEEEEEEEcCCcCCCCCCCcceEEec
Q psy12425        550 YEFRVYAENVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       550 Y~~~v~A~n~~G~~~~s~~~~~~~t~  575 (591)
                      |.|||+|.|.+|.|++|..+..+.+.
T Consensus        81 Y~frV~A~N~~G~s~~S~~s~~~~~~  106 (107)
T d2ic2a1          81 YRFRILAVYSNNDNKESNTSAKFYLQ  106 (107)
T ss_dssp             EEEEEEEEETTSCEEECCCCCCEEEC
T ss_pred             EEEEEEEEcCCCCCCCCCCCCCEEcC
Confidence            99999999999999999887766654

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.9e-15  Score=108.10  Aligned_cols=95  Identities=29%  Similarity=0.523  Sum_probs=76.6

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCc---eEE----eceeeeeEEEEcCcccCceEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS---WIR----VGNTRFTTMAITGLSPGHQYEF  552 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~---~~~----~~~~~~~~~~i~~l~~~~~Y~~  552 (591)
                      +.|++|.++.+..++.+++.|+|++|. +++.++..|.++++......   |..    ........+.+.+|.|++.|.|
T Consensus         9 ~~P~~P~~~~~~~~~~~sv~l~W~pp~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~f   87 (111)
T d1wisa1           9 ELPGPPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSF   87 (111)
T ss_dssp             CCCCCCEEEEEESCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECC
T ss_pred             CCCcCCCCCEEEEcCCCEEEEEEeCCC-CCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEEEE
Confidence            457888888998889999999999765 67779999999998654332   222    1344567899999999999999


Q ss_pred             EEEEEcCCcCCCCCCCcceEEec
Q psy12425        553 RVYAENVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       553 ~v~A~n~~G~~~~s~~~~~~~t~  575 (591)
                      +|+|.|.+|.|++|.++..++|.
T Consensus        88 rV~A~N~~G~s~~S~~s~~~~Tl  110 (111)
T d1wisa1          88 RMRQVNIVGTSPPSQPSRKIQTL  110 (111)
T ss_dssp             CCEEECSSCBCCCCCCCCCEECC
T ss_pred             EEEEEcCCcCCCCcCCCCCEEcc
Confidence            99999999999999887666653

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.7e-14  Score=100.80  Aligned_cols=85  Identities=18%  Similarity=0.369  Sum_probs=71.7

Q ss_pred             CCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEe--c--CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEE
Q psy12425        402 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVET--S--ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ  477 (591)
Q Consensus       402 ~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~--~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~  477 (591)
                      .+....+.|.+.|.|.|.+.|+++|..+..+..+.+..  .  .....|.|.++...|.|.|+|.|.|..|..+.++.|.
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   95 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence            35556788999999999999999999997766554432  2  2356799999999999999999999999999999999


Q ss_pred             ecCCCCCCC
Q psy12425        478 ISDRPDPPQ  486 (591)
Q Consensus       478 v~~~p~~p~  486 (591)
                      |..+|.|+.
T Consensus        96 V~~~P~P~~  104 (105)
T d1wwca_          96 FLKEPFPVD  104 (105)
T ss_dssp             CSCCCCCSC
T ss_pred             EEeCCCCCC
Confidence            999998765

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=102.71  Aligned_cols=91  Identities=24%  Similarity=0.315  Sum_probs=74.7

Q ss_pred             CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCce-EEeceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW-IRVGNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       482 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      |.+|..+.+...+.+++.|+|++|...+| .+.+|.+.++......| ..........+.+.+|.|++.|.|+|+|.|.+
T Consensus         1 P~~~~~l~~~~~t~~si~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   79 (95)
T d2djsa1           1 PSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVA   79 (95)
T ss_dssp             CCCCSCCEEEEECSSEEEEECCCCSCCSS-CEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEEEEEEEESS
T ss_pred             CCCCCccEEEeecCCEEEEEEEECCCCCc-ceEEeeeeeeeeccCcceeEeecCCccEEEEeecCCccEEEEEEEEEcCC
Confidence            55666789999999999999998875554 89999999987765444 23345566789999999999999999999999


Q ss_pred             cCCCCCCCcceEE
Q psy12425        561 GRSDPSTTSDLIT  573 (591)
Q Consensus       561 G~~~~s~~~~~~~  573 (591)
                      |.|++|....+.|
T Consensus        80 G~g~~S~~~~~~T   92 (95)
T d2djsa1          80 GYGKFSGKMCFQT   92 (95)
T ss_dssp             CEEEECCCEEEEC
T ss_pred             CCCCCCCCEEEEe
Confidence            9999998876533

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.52  E-value=1.5e-14  Score=102.83  Aligned_cols=81  Identities=17%  Similarity=0.354  Sum_probs=69.3

Q ss_pred             eeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceE-EEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEE
Q psy12425        398 AYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFH-VETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI  476 (591)
Q Consensus       398 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~  476 (591)
                      ..+..|+.+.|.|.+.|.|.|.+.|++||..+....++. .........|.|.++...|+|.|+|.|.|..|..+.++.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            456889999999999999999999999999997655432 2233456789999999999999999999999999888888


Q ss_pred             Ee
Q psy12425        477 QI  478 (591)
Q Consensus       477 ~v  478 (591)
                      .|
T Consensus        95 ~V   96 (97)
T d3dara1          95 DV   96 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.51  E-value=4.1e-14  Score=97.83  Aligned_cols=77  Identities=17%  Similarity=0.179  Sum_probs=63.1

Q ss_pred             ceeeeecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-EE
Q psy12425          3 NALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS-GT   80 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-~~   80 (591)
                      ....|.+|++++|.|.+.+ .|.+.+.|+|||+.+....        ....|.|.+++.+|+|.|+|.|.|..|... ..
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~--------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~   79 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR--------SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKP   79 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES--------SCCEEEETTCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc--------cccccccCccCHHHCCeEEEEEEeCCCCEEeee
Confidence            3556899999999999965 5677999999998775432        234799999999999999999999998764 45


Q ss_pred             EEEEEec
Q psy12425         81 FTINITG   87 (591)
Q Consensus        81 ~~l~v~~   87 (591)
                      +.|.|..
T Consensus        80 v~l~V~~   86 (88)
T d2fcba2          80 VTITVQA   86 (88)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            8888865

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=1.8e-14  Score=102.53  Aligned_cols=82  Identities=17%  Similarity=0.370  Sum_probs=68.2

Q ss_pred             CceeeeecC---CeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE
Q psy12425          2 PNALYIPEG---DNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS   78 (591)
Q Consensus         2 p~~~~v~~G---~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~   78 (591)
                      |.++.+.+|   ++++|.|.+.|.|.|.+.|+|||..+....+..+...++ ..|.|..+..+|+|.|+|.|.|..|...
T Consensus        11 P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~N~~G~~~   89 (97)
T d1cs6a1          11 PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQCVATNARGTVV   89 (97)
T ss_dssp             CCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEEEEEEETTEEEE
T ss_pred             CCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEEEEEEECCCEEE
Confidence            667777776   799999999999999999999999998776666555544 4788999999999999999999999863


Q ss_pred             -EEEEEE
Q psy12425         79 -GTFTIN   84 (591)
Q Consensus        79 -~~~~l~   84 (591)
                       ..+.|.
T Consensus        90 S~~a~L~   96 (97)
T d1cs6a1          90 SREASLR   96 (97)
T ss_dssp             CCCEEEE
T ss_pred             EEEEEEe
Confidence             356654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.51  E-value=3e-14  Score=98.68  Aligned_cols=78  Identities=21%  Similarity=0.149  Sum_probs=62.6

Q ss_pred             CceeeeecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE-E
Q psy12425          2 PNALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS-G   79 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~-~   79 (591)
                      |....|.+|++++|.|.+.+ .|.+.+.|+|||+.+....        ....|.|.+++.+|+|.|.|.|.|..|... .
T Consensus         9 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~--------~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~   80 (89)
T d1fnla2           9 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH--------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE   80 (89)
T ss_dssp             CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE--------ECCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec--------cccccEECccceeccceEEEEEEeCCCCeEEe
Confidence            34566899999999999864 5677999999998764321        123789999999999999999999988764 4


Q ss_pred             EEEEEEec
Q psy12425         80 TFTINITG   87 (591)
Q Consensus        80 ~~~l~v~~   87 (591)
                      .+.|+|.+
T Consensus        81 ~v~itV~E   88 (89)
T d1fnla2          81 TVNITITQ   88 (89)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEEe
Confidence            58888864

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.2e-15  Score=106.00  Aligned_cols=82  Identities=9%  Similarity=0.002  Sum_probs=68.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCce-EEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAG-DYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~c~~~n~~g~~~~~   80 (591)
                      |.++.+.+|+++.|.|.+.|.|.|.|.|++++..+....+  .........|.|.+++.+|.| .|+|.|.|..|..+.+
T Consensus         9 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s   86 (92)
T d2ifga1           9 VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVS   86 (92)
T ss_dssp             CCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEE
T ss_pred             CCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEcCCCEEEEE
Confidence            4678899999999999999999999999999987654322  222345578999999999999 6999999999999888


Q ss_pred             EEEEE
Q psy12425         81 FTINI   85 (591)
Q Consensus        81 ~~l~v   85 (591)
                      +.|.|
T Consensus        87 ~~l~V   91 (92)
T d2ifga1          87 VQVNV   91 (92)
T ss_dssp             ECCCC
T ss_pred             EEEEE
Confidence            87765

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=3.7e-14  Score=100.71  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=73.1

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-CceEEe--ceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-SSWIRV--GNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      .|+.+|..+.+..++.+++.|+|++|...++..+.+|.|.|+..+. ..|...  .+.....+.|.||.|++.|.|+|+|
T Consensus         5 ~P~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   84 (95)
T d2ibga1           5 DPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQS   84 (95)
T ss_dssp             CCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEE
Confidence            4556788899999999999999998776667789999999987643 445443  4556678999999999999999999


Q ss_pred             EcCCcCCCCCC
Q psy12425        557 ENVYGRSDPST  567 (591)
Q Consensus       557 ~n~~G~~~~s~  567 (591)
                      .|..|.|++|.
T Consensus        85 ~n~~G~s~~Ss   95 (95)
T d2ibga1          85 FSAASASEFSA   95 (95)
T ss_dssp             ECSSCBCCCCC
T ss_pred             EeCCccCCCCC
Confidence            99999999873

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.7e-14  Score=97.76  Aligned_cols=79  Identities=19%  Similarity=0.128  Sum_probs=65.3

Q ss_pred             ceeeeecCCeEEEEEEeccC-CCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-EEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGD-QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGT   80 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-~~~   80 (591)
                      ....|.+|++++|.|.+.+. |...+.|||||+.+.....        ...|.|.+++.+|+|.|.|.|.|..|.. +..
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~--------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~   79 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE--------NHNISITNATVEDSGTYYCTGKVWQLDYESEP   79 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC--------SSEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc--------cceEEEeeeeeecCcEEEEEEEeCCCCeEeee
Confidence            34568999999999999764 6679999999998865432        2379999999999999999999998876 455


Q ss_pred             EEEEEecCC
Q psy12425         81 FTINITGLP   89 (591)
Q Consensus        81 ~~l~v~~~p   89 (591)
                      +.|.|...|
T Consensus        80 v~i~V~~~P   88 (89)
T d1f2qa2          80 LNITVIKAP   88 (89)
T ss_dssp             EEEEEECSC
T ss_pred             EEEEEEeCC
Confidence            889998876

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-13  Score=99.01  Aligned_cols=83  Identities=17%  Similarity=0.467  Sum_probs=71.1

Q ss_pred             cCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEec-----CCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        401 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETS-----ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       401 ~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      ..+....+.|.+.|.|.|++.|+++|..+..+..+.+...     ...+.|.|.+++..|.|.|+|.|.|..|..+..+.
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            3577788999999999999999999999987665544321     23467999999999999999999999999999999


Q ss_pred             EEecCCCC
Q psy12425        476 IQISDRPD  483 (591)
Q Consensus       476 ~~v~~~p~  483 (591)
                      |.+.++|+
T Consensus        94 v~V~~~P~  101 (103)
T d1wwbx_          94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEEEeCCC
Confidence            99998875

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.7e-14  Score=103.12  Aligned_cols=86  Identities=14%  Similarity=0.155  Sum_probs=66.9

Q ss_pred             CceeeeecCCeEEEEEEeccCC-CceEEEEECCEEeecC-Cce--eEEEeCC--eEEEEEcccCCCCceEEEEEEEcCCe
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ-PMEVSLTKNGRVVQSD-DRF--KFTVLDD--YIIIFIKEIRKEDAGDYTVNLSNSSG   75 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~-~~~--~~~~~~~--~~~l~i~~~~~~d~g~Y~c~~~n~~g   75 (591)
                      |....|.+|+++.|.|.+.|.| .|.|.|+|++..+... .+.  .....+.  ...|.|.+++.+|+|.|+|.|.|..|
T Consensus        10 ~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   89 (104)
T d2aw2a1          10 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSN   89 (104)
T ss_dssp             TEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCC
Confidence            4577899999999999999988 5899999988765332 222  2222222  35799999999999999999999999


Q ss_pred             eeE-EEEEEEEec
Q psy12425         76 SVS-GTFTINITG   87 (591)
Q Consensus        76 ~~~-~~~~l~v~~   87 (591)
                      ... .++.|.|.+
T Consensus        90 ~~~s~~~~l~V~e  102 (104)
T d2aw2a1          90 LIESHSTTLYVTD  102 (104)
T ss_dssp             EEECCCEEEEEEC
T ss_pred             eEEEEEEEEEEEE
Confidence            864 568888865

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.49  E-value=3.2e-14  Score=98.95  Aligned_cols=86  Identities=24%  Similarity=0.441  Sum_probs=70.6

Q ss_pred             CCeEEeecc-ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        292 APEIIVPLR-NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       292 ~p~~~~~~~-~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      +|.|...+. ...+.+|+.+.|.|.+.|.|.|.+.|++++..+..+ ++.+. ++   .|.|.++...|+|.|+|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~-~~---~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT-DS---GLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE-TT---EEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEe-ee---eEEECCCChhhCEEEEEEEEEC
Confidence            466665544 356788999999999999999999999999988643 44442 22   5999999999999999999999


Q ss_pred             CcceeeeeEEEE
Q psy12425        371 GGVKSTKAELII  382 (591)
Q Consensus       371 ~g~~~~~~~l~v  382 (591)
                      .|.....+.|.|
T Consensus        77 ~G~~~~~~~l~V   88 (89)
T d1biha4          77 HGDKYFETLVQV   88 (89)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999888877776

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.49  E-value=3e-15  Score=108.10  Aligned_cols=79  Identities=11%  Similarity=0.019  Sum_probs=64.5

Q ss_pred             CceeeeecCCeEEEEEEe-ccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      ++++.|.+|+++.|.|.+ .|.|.+.|.|+|||..+......+........+|.|.+++++|+|.|+|.|.|..|..+.+
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            356899999999999997 6789999999999987655444444444444589999999999999999999998876655

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-14  Score=103.98  Aligned_cols=92  Identities=23%  Similarity=0.310  Sum_probs=76.4

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      +.|++|.++++...+.+++.|+|++|.  + ..+.+|.|+|+......|..........+.|.+|.|++.|.|+|+|.|.
T Consensus         9 ~vP~~P~~~~~~~~~~~si~l~W~~p~--~-~~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   85 (102)
T d1x5za1           9 GVPGQPLNFKAEPESETSILLSWTPPR--S-DTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSP   85 (102)
T ss_dssp             CCCCCCEEEEEECSSSSEEEEEEECCS--C-CCCCEEEECBEESSSCCCBCCEECSSSEEEEECCCTTCEEEECEEEECS
T ss_pred             CCCcCCCCeEEEEccCCEEEEEEECCC--C-CCccceEEEEEeCCCCceEEEEcCCcCEEEECCCCCCCEEEEEEEEEcC
Confidence            567888889999999999999999874  2 3689999999987766665554445578999999999999999999999


Q ss_pred             CcCCCCCCCcceEEec
Q psy12425        560 YGRSDPSTTSDLITTY  575 (591)
Q Consensus       560 ~G~~~~s~~~~~~~t~  575 (591)
                      .|.|++|....+ +|.
T Consensus        86 ~G~g~~S~~v~~-~T~  100 (102)
T d1x5za1          86 QGLGASTAEISA-RTM  100 (102)
T ss_dssp             SCEEEECCCEEE-ECC
T ss_pred             CCEeCCCCCEEE-EcC
Confidence            999999987654 443

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.7e-14  Score=99.97  Aligned_cols=85  Identities=19%  Similarity=0.262  Sum_probs=71.0

Q ss_pred             CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe-ceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       482 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      |++|. +.+...+.+++.|+|++|...+ +.+.+|.|+|+......|... .......++|.+|.|++.|.|+|+|.|..
T Consensus         1 P~~P~-~~~~~~~~~sv~l~W~pP~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   78 (94)
T d2dn7a1           1 PGRPT-MMISTTAMNTALLQWHPPKELP-GELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRA   78 (94)
T ss_dssp             CCCCE-EEEEECSTTEEEEEEECCSSCS-SCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEETT
T ss_pred             CCCCc-EeEEEEeCCEEEEEEeCCCCCC-CceEEEEEEEEEcCCCCcEEEEcCCCccEEEEEccCCeeEEEEEEEEEcCC
Confidence            56775 4566678899999999887554 489999999998887777765 35566789999999999999999999999


Q ss_pred             cCCCCCCC
Q psy12425        561 GRSDPSTT  568 (591)
Q Consensus       561 G~~~~s~~  568 (591)
                      |.|++|..
T Consensus        79 G~g~~s~~   86 (94)
T d2dn7a1          79 GLGEEFEK   86 (94)
T ss_dssp             EEEEEEEE
T ss_pred             cCCCCccE
Confidence            99998764

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=9.5e-14  Score=99.45  Aligned_cols=93  Identities=29%  Similarity=0.477  Sum_probs=73.2

Q ss_pred             CCeEEeecc--ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCc--eEEEEeCCeEEEEEcceecccceEEEEEE
Q psy12425        292 APEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR--HHIFAEGDTYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       292 ~p~~~~~~~--~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      ||.+.....  +..+..|+.+.|.|.+.|.|.|.+.|++++..+.....  ..........+|.|.++..+|+|.|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            466654433  34567899999999999999999999999988765432  22233444568999999999999999999


Q ss_pred             EeCCcceeeeeEEEEec
Q psy12425        368 VNKGGVKSTKAELIIMT  384 (591)
Q Consensus       368 ~n~~g~~~~~~~l~v~~  384 (591)
                      .|..|.....+.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999998888888864

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.2e-14  Score=104.36  Aligned_cols=89  Identities=22%  Similarity=0.297  Sum_probs=73.4

Q ss_pred             cCCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCc-eE-EeceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        479 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS-WI-RVGNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       479 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~-~~-~~~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      .+.|++|.++.+..++.+++.|+|++|...+| .+.+|+|+|+..+... |. .........+.|.+|.|++.|.|+|+|
T Consensus         8 e~vP~~p~~l~~~~~~~~sv~l~W~~P~~~ng-~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   86 (106)
T d1wfna1           8 EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAA   86 (106)
T ss_dssp             CCSCCCCSCCEEESCCSSEEEEECCCCTTCCS-CCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEE
T ss_pred             CCCCcCCCCcEEEEecCCEEEEEEECCCCCCC-cEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEEEEEEE
Confidence            35789999999999999999999998876655 7999999998765432 22 223445578999999999999999999


Q ss_pred             EcCCcCCCCCCC
Q psy12425        557 ENVYGRSDPSTT  568 (591)
Q Consensus       557 ~n~~G~~~~s~~  568 (591)
                      .|..|.|++|..
T Consensus        87 ~n~~G~g~~s~~   98 (106)
T d1wfna1          87 MTSKGQGQVSAS   98 (106)
T ss_dssp             ECSSCEEEEEEE
T ss_pred             ECCCCCcCCcCC
Confidence            999999988864

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.3e-14  Score=100.41  Aligned_cols=85  Identities=12%  Similarity=0.036  Sum_probs=62.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEE---CCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTK---NGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS   78 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~   78 (591)
                      ++++.|.+|+++.|.|.+.|.|.|.+.|.+   ++..+.......+.......+|.|.++.++|+|.|+|.|.|..|...
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   87 (96)
T d2c9aa1           8 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI   87 (96)
T ss_dssp             CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEE
Confidence            467899999999999999999887655432   33333222222233233346899999999999999999999999875


Q ss_pred             EE-EEEEEe
Q psy12425         79 GT-FTINIT   86 (591)
Q Consensus        79 ~~-~~l~v~   86 (591)
                      +. +.|.|.
T Consensus        88 s~~a~L~Vk   96 (96)
T d2c9aa1          88 SNYAELVVK   96 (96)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            44 677763

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.4e-14  Score=105.49  Aligned_cols=89  Identities=25%  Similarity=0.414  Sum_probs=74.4

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCce---EEeceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~---~~~~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      +.|++|.++.+...+.+++.|+|.+|..++| .+.+|.|+|+......+   ..........+.|.+|.|++.|.|+|+|
T Consensus        19 ~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g-~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   97 (117)
T d1wfoa1          19 DVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITA   97 (117)
T ss_dssp             CCCCCCCCCEEEEECSSEEEEECCCCSCCCS-CCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSSEEEEEEEE
T ss_pred             CCCcCCCCcEEEEecCCEEEEEEECCCCCCC-ceEEEeeeeeeccCCCceEeEEecCCceEEEEECCCCCCCEEEEEEEE
Confidence            5689999999999999999999998876655 79999999987655332   2334455678999999999999999999


Q ss_pred             EcCCcCCCCCCCc
Q psy12425        557 ENVYGRSDPSTTS  569 (591)
Q Consensus       557 ~n~~G~~~~s~~~  569 (591)
                      .|.+|.|++|...
T Consensus        98 ~n~~G~g~~S~~~  110 (117)
T d1wfoa1          98 QTRKGWGEAAEAL  110 (117)
T ss_dssp             ECSSCEEEEEEEE
T ss_pred             ECCCcCCCCcCCE
Confidence            9999999988764

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.4e-14  Score=101.07  Aligned_cols=89  Identities=20%  Similarity=0.245  Sum_probs=73.0

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCC-----CceEEe--ceeeeeEEEEcCcccCceEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM-----SSWIRV--GNTRFTTMAITGLSPGHQYEF  552 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-----~~~~~~--~~~~~~~~~i~~l~~~~~Y~~  552 (591)
                      +.|++|.++.+...+.+++.|+|++|... ++.+.+|.|+++....     ..|...  .......++|.+|.+++.|.|
T Consensus         1 d~P~~P~~~~~~~~~~~sv~v~W~~P~~~-~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   79 (103)
T d1qg3a2           1 EVPSEPGRLAFNVVSSTVTQLSWAEPAET-NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRY   79 (103)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCC-SSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEE
T ss_pred             CcCccCCCcEEEEecCCEEEEEEEECccC-CCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEE
Confidence            46899999999999999999999988754 4589999999976543     223332  445567899999999999999


Q ss_pred             EEEEEcCCcCCCCCCCc
Q psy12425        553 RVYAENVYGRSDPSTTS  569 (591)
Q Consensus       553 ~v~A~n~~G~~~~s~~~  569 (591)
                      +|+|.|.+|.|+++...
T Consensus        80 ~V~A~n~~G~g~~s~~~   96 (103)
T d1qg3a2          80 TVKARNGAGWGPEREAI   96 (103)
T ss_dssp             EEEEEETTEECCCEEEE
T ss_pred             EEEEEcCCccCCCcccc
Confidence            99999999999887643

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.46  E-value=2.3e-13  Score=98.44  Aligned_cols=95  Identities=15%  Similarity=0.130  Sum_probs=75.6

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeecc-ccCCCcceeeEEEEeeeCC-CCceEEe--ceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAP-IWDGGSNITNYIVEKREHP-MSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p-~~~~~~~~~~y~v~~~~~~-~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      |+.+|.++++...+.+++.|+|+++ ..+.++++.+|.|.|+... ...|...  .+.....+.|.+|.+++.|.|+|+|
T Consensus         4 P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   83 (105)
T d1cfba2           4 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVA   83 (105)
T ss_dssp             CSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEE
T ss_pred             CCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEEE
Confidence            3468899999999999999999974 3345558999999998764 3445433  4556679999999999999999999


Q ss_pred             EcCCcCCCCCCCcceEEec
Q psy12425        557 ENVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~~~t~  575 (591)
                      .|..|.|++|....+..+.
T Consensus        84 ~N~~G~gp~S~~~v~~~t~  102 (105)
T d1cfba2          84 INDRGESNVAAEEVVGYSG  102 (105)
T ss_dssp             EETTEECSSCCCCEEEESS
T ss_pred             EeCCcCCCCCCCcEeEcCC
Confidence            9999999998775444443

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.46  E-value=1.2e-13  Score=96.65  Aligned_cols=86  Identities=27%  Similarity=0.355  Sum_probs=68.9

Q ss_pred             CCeEEee-ccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        292 APEIIVP-LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       292 ~p~~~~~-~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      +|.+... +.+..+.+|+.+.|.|.+.|.|.|.+.|++++........    .  ...+|.|.++..+|+|.|+|.|.|.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~----~--~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL----S--SEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCS----B--SSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEee----e--eeeEEEeCCCCccCCEEEEEEEEEC
Confidence            4555543 5778899999999999999999999999997654332111    1  1227999999999999999999999


Q ss_pred             CcceeeeeEEEEe
Q psy12425        371 GGVKSTKAELIIM  383 (591)
Q Consensus       371 ~g~~~~~~~l~v~  383 (591)
                      .|.....+.|.|.
T Consensus        78 ~G~~~~~~~l~V~   90 (91)
T d1cs6a3          78 KGRDTYQGRIIIH   90 (91)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9998888888775

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.1e-13  Score=97.72  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=76.4

Q ss_pred             CCCCCCCCeeeeec--CCeeEEEeecccc-CCCcceeeEEEEeeeCCCCceEEe-ceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        481 RPDPPQFPTVEDIG--HDSLALVWRAPIW-DGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       481 ~p~~p~~~~~~~~~--~~~v~l~W~~p~~-~~~~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      .|++|.++.+..+.  ...+.|+|++|.. +.+..+..|+|.++......|... .....+.+.|.+|.+++.|.|+|+|
T Consensus         1 kP~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra   80 (104)
T d1n26a3           1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRA   80 (104)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGGGCSEEEESSCCTTCCEEEEEEE
T ss_pred             CCcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeeccccceEEEEECCCCCCCEEEEEEEE
Confidence            48999999888754  5679999998754 456678999999999888888776 3445578999999999999999999


Q ss_pred             EcCCcCCCCCCCcceE
Q psy12425        557 ENVYGRSDPSTTSDLI  572 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~~  572 (591)
                      .|..|.|.+|+.+..+
T Consensus        81 ~n~~g~g~wSewS~~~   96 (104)
T d1n26a3          81 QEEFGQGEWSEWSPEA   96 (104)
T ss_dssp             EETTTBSCCCCCCCCE
T ss_pred             EeCCCccCCcCCcCCE
Confidence            9999999988865443

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.6e-14  Score=104.63  Aligned_cols=105  Identities=25%  Similarity=0.350  Sum_probs=80.2

Q ss_pred             CCC-CCCCCCeeeeecCCeeEEEeecccc-CCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEE
Q psy12425        480 DRP-DPPQFPTVEDIGHDSLALVWRAPIW-DGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVY  555 (591)
Q Consensus       480 ~~p-~~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~  555 (591)
                      +.| .+|.++.+...+.+++.|+|++|.. ..++.+.+|+|+|+......+...  .......+.|.+|.+++.|.|+|+
T Consensus         9 ~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   88 (119)
T d1x5ha1           9 DVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVA   88 (119)
T ss_dssp             SSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEECE
T ss_pred             CCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCEEEEEEE
Confidence            445 4788889998999999999998642 333489999999988776555443  344567999999999999999999


Q ss_pred             EEcCCcCCCCCCCcceEEeccccccCCCCC
Q psy12425        556 AENVYGRSDPSTTSDLITTYGELLSGMEAP  585 (591)
Q Consensus       556 A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~  585 (591)
                      |.|..|.|++|....+ +|.+..+..+.+|
T Consensus        89 A~n~~G~G~~S~~~~~-~T~~~~~~~~~~P  117 (119)
T d1x5ha1          89 ALTINGTGPATDWLSA-ETFESDLDETRVP  117 (119)
T ss_dssp             EEETTEEEEECCCEEE-ECCSSCCCCCCCC
T ss_pred             EEcCCcCCCCCCCEEE-EeCCCCCCCCcCC
Confidence            9999999999987655 5544444444333

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.3e-13  Score=95.47  Aligned_cols=83  Identities=19%  Similarity=0.367  Sum_probs=69.9

Q ss_pred             ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecC--CeeEEEEeccCCCcceeEEEEEEcCCCcc-ceE
Q psy12425        397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE--RHAILTIRDASNVDTAPYRVVAENDLGMD-SAI  473 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~c~a~n~~g~~-~~~  473 (591)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+.......+....  ....|.|.+++..|+|.|+|.|.|..|.. +..
T Consensus         5 ~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~   84 (91)
T d1rhfa1           5 KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP   84 (91)
T ss_dssp             EEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred             eEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEE
Confidence            456788999999999999999999999999998776665554433  35679999999999999999999999975 667


Q ss_pred             EEEEec
Q psy12425        474 VKIQIS  479 (591)
Q Consensus       474 ~~~~v~  479 (591)
                      +.|.|+
T Consensus        85 ~~l~V~   90 (91)
T d1rhfa1          85 VWLTVE   90 (91)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777764

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.9e-14  Score=101.38  Aligned_cols=85  Identities=11%  Similarity=0.081  Sum_probs=70.6

Q ss_pred             CceeeeecCCeEEEEEEec-cCCCceEEEEECCEEeecC--CceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE
Q psy12425          2 PNALYIPEGDNTKVKIFYA-GDQPMEVSLTKNGRVVQSD--DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS   78 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~   78 (591)
                      |..+.+.+|+.+.|.|.+. +.|.+.|.|+|+|..+...  .+.++...+.  +|.|.+++.+|+|.|+|.|.|..|...
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~   86 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLR   86 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETT--EEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCC--EEEeccceecCCEEEEEEEECCCCeEE
Confidence            5567899999999999885 6899999999998655433  3344444443  799999999999999999999999999


Q ss_pred             EEEEEEEecC
Q psy12425         79 GTFTINITGL   88 (591)
Q Consensus        79 ~~~~l~v~~~   88 (591)
                      .++.|.|...
T Consensus        87 ~~~~L~V~~~   96 (101)
T d1iray1          87 IKISAKFVEN   96 (101)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEEeC
Confidence            9999999864

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.3e-13  Score=96.42  Aligned_cols=91  Identities=15%  Similarity=0.296  Sum_probs=75.9

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCC-eeEEecCCccCC------CCCceEEEEeCCeEEEEEccee-cccceEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREIT------PSARHHIFAEGDTYTLIINSVY-GVDADEY  363 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~------~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y  363 (591)
                      ||.+...+....+.+|+.+.|.|.+.|.|.+ .+.|++++....      ...++.+...+....|.|.++. ..|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            6777777788889999999999999999987 699998653321      2345677788888899999998 5799999


Q ss_pred             EEEEEeCCcceeeeeEEEE
Q psy12425        364 VCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       364 ~c~a~n~~g~~~~~~~l~v  382 (591)
                      +|.|.|..|.....+.|.|
T Consensus        82 ~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          82 RCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEE
Confidence            9999999999988888877

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.45  E-value=2.6e-13  Score=94.07  Aligned_cols=84  Identities=25%  Similarity=0.315  Sum_probs=67.7

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      .+|.+|.++.+..++.+++.|+|++|..+  ..+.+|++.+...      .......+.+++.+|.|++.|.|+|+|.|.
T Consensus         2 ~AP~~P~~l~~~~~~~~sv~lsW~~p~~~--~~i~~Y~i~~~~~------~~~~~~~t~~~~~~L~p~t~Y~~~V~A~n~   73 (88)
T d1k85a_           2 MAPTAPTNLASTAQTTSSITLSWTASTDN--VGVTGYDVYNGTA------LATTVTGTTATISGLAADTSYTFTVKAKDA   73 (88)
T ss_dssp             CSCCCCEEEEEEEECSSCEEEEEECCSCC--SSEEEEEEEESSS------EEEEESSSEEEECCCCSSCEEEEEEEEEET
T ss_pred             cCcCCCCCcEEEEecCCEEEEEEeCCCCC--CCEEEEEEEccce------EEEecCCCEEEECCCCCCCEEEEEEEEEEC
Confidence            36899999999999999999999987633  3588999986421      223344578999999999999999999999


Q ss_pred             Cc-CCCCCCCcce
Q psy12425        560 YG-RSDPSTTSDL  571 (591)
Q Consensus       560 ~G-~~~~s~~~~~  571 (591)
                      .| .|.+|....+
T Consensus        74 ~G~~s~~S~~v~v   86 (88)
T d1k85a_          74 AGNVSAASNAVSV   86 (88)
T ss_dssp             TTEECCCCCCEEE
T ss_pred             CCCcCCCCcCEEE
Confidence            99 6888876543

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.8e-13  Score=97.08  Aligned_cols=90  Identities=22%  Similarity=0.304  Sum_probs=74.8

Q ss_pred             CCCCCCCCeee----eecCCeeEEEeecccc---CCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEE
Q psy12425        481 RPDPPQFPTVE----DIGHDSLALVWRAPIW---DGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFR  553 (591)
Q Consensus       481 ~p~~p~~~~~~----~~~~~~v~l~W~~p~~---~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  553 (591)
                      +|+||.++.+.    ....+++.|+|++|..   +++..+..|+++++..+...|........+.+.|.+|.+++.|.|+
T Consensus         2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   81 (103)
T d1f6fb2           2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTGHQTQFKVFDLYPGQKYLVQ   81 (103)
T ss_dssp             CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEEETCSEEEECCCCTTCEEEEE
T ss_pred             CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeecccceeEEEeCCCCcceEEEEE
Confidence            58899988764    3466789999998853   3445778999999999999998887777789999999999999999


Q ss_pred             EEEEcCCcC-CCCCCCcc
Q psy12425        554 VYAENVYGR-SDPSTTSD  570 (591)
Q Consensus       554 v~A~n~~G~-~~~s~~~~  570 (591)
                      |+|.|..|. |++|....
T Consensus        82 Vra~~~~G~wS~wS~~~~   99 (103)
T d1f6fb2          82 TRCKPDHGYWSRWSQESS   99 (103)
T ss_dssp             EEEEESSSCCCCCCCCEE
T ss_pred             EEEEeCCCCCCCCcCcee
Confidence            999999997 88887654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.1e-13  Score=97.64  Aligned_cols=82  Identities=16%  Similarity=0.136  Sum_probs=66.9

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEE---eC---------CeEEEEEcccCCCCce-EEEEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV---LD---------DYIIIFIKEIRKEDAG-DYTVN   69 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~---~~---------~~~~l~i~~~~~~d~g-~Y~c~   69 (591)
                      ..+.+..|+++.|.|.+.|.|.+.+.|++||..+..........   ..         ....|.|.+++.+|.| .|+|.
T Consensus        10 ~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~   89 (107)
T d1iray3          10 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF   89 (107)
T ss_dssp             EEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEE
T ss_pred             CEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEE
Confidence            35778899999999999999999999999999887654332211   10         1258999999999999 59999


Q ss_pred             EEcCCeeeEEEEEEE
Q psy12425         70 LSNSSGSVSGTFTIN   84 (591)
Q Consensus        70 ~~n~~g~~~~~~~l~   84 (591)
                      |.|..|..+..+.|.
T Consensus        90 A~N~~G~~~~~i~L~  104 (107)
T d1iray3          90 AKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EECSSCEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEE
Confidence            999999998888776

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2e-13  Score=95.61  Aligned_cols=89  Identities=13%  Similarity=0.201  Sum_probs=71.6

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      +.|...+++..+.+|+.+.|.|.+.|.|.|.+.|++++..+...........+. .+|.|.++...|+|.|+|.|.|..|
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEEECcC
Confidence            456667788889999999999999999999999999998776655443333222 2699999999999999999999887


Q ss_pred             ceeeeeEEEE
Q psy12425        373 VKSTKAELII  382 (591)
Q Consensus       373 ~~~~~~~l~v  382 (591)
                      .......+.|
T Consensus        81 ~~~~~~~i~V   90 (92)
T d1epfa2          81 GEINFKDIQV   90 (92)
T ss_dssp             TEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            7666555555

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.1e-14  Score=98.11  Aligned_cols=79  Identities=10%  Similarity=0.049  Sum_probs=61.6

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEEEEE
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTI   83 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~~~l   83 (591)
                      ...+.+|+++.|.|.+.| |.+.+.|+++|..+........... + .+|.|.+++++|+|.|+|.|.|..|..+....+
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~-~-~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l   82 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMG-R-KNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV   82 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTT-T-TCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecce-e-eEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence            568999999999999997 6689999999998866533222112 2 269999999999999999999988876555444


Q ss_pred             EE
Q psy12425         84 NI   85 (591)
Q Consensus        84 ~v   85 (591)
                      .+
T Consensus        83 ~~   84 (92)
T d1olza1          83 AK   84 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.1e-13  Score=92.62  Aligned_cols=76  Identities=11%  Similarity=0.209  Sum_probs=64.1

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL  380 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l  380 (591)
                      +..+.+|+.+.|.|.+.|.|.|.+.|++++..+.        ..+  ..|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~--------~~~--~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v   77 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------QGG--KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI   77 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE--------EES--SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccce--------eee--eeeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence            4568999999999999999999999998765432        112  269999999999999999999999999888888


Q ss_pred             EEecCC
Q psy12425        381 IIMTAP  386 (591)
Q Consensus       381 ~v~~~p  386 (591)
                      .|...|
T Consensus        78 ~V~~~~   83 (84)
T d2nxyb2          78 VVLAFQ   83 (84)
T ss_dssp             CEECCC
T ss_pred             EEEecC
Confidence            887654

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-12  Score=90.78  Aligned_cols=78  Identities=12%  Similarity=0.210  Sum_probs=64.7

Q ss_pred             cccceeccccEEEEEEEc-CCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeee
Q psy12425        300 RNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA  378 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~  378 (591)
                      ....+..|+++.|.|.+. |.|.+.+.|++.+..+..     .........|.|.+++.+|+|.|+|.|.|..|....++
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~   85 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV   85 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEE
Confidence            446678999999999985 789999999987766531     23345567899999999999999999999999888888


Q ss_pred             EEEE
Q psy12425        379 ELII  382 (591)
Q Consensus       379 ~l~v  382 (591)
                      .|.|
T Consensus        86 ~l~V   89 (90)
T d1gsma1          86 QLLV   89 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8776

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=2.2e-13  Score=99.79  Aligned_cols=85  Identities=19%  Similarity=0.239  Sum_probs=65.9

Q ss_pred             eeeeecCCeEEEEEEec-cCCCceEEEEECCEEeecCCce--------eEEEeCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425          4 ALYIPEGDNTKVKIFYA-GDQPMEVSLTKNGRVVQSDDRF--------KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      +..|.+|+++.|.|.+. |.|.+.+.|+|++..+......        ..........|.|.+++.+|+|.|+|.|.|..
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            34688999999999985 7999999999999887554322        22333344579999999999999999999999


Q ss_pred             eeeEE--EEEEEEecC
Q psy12425         75 GSVSG--TFTINITGL   88 (591)
Q Consensus        75 g~~~~--~~~l~v~~~   88 (591)
                      |....  .++|.|.+.
T Consensus        91 G~~~~s~~v~l~V~~l  106 (110)
T d1f97a2          91 GTAMRSEAAHMDAVEL  106 (110)
T ss_dssp             SCCEECCCEEEEEESS
T ss_pred             CcEEEEEEEEEEEEec
Confidence            97754  477777764

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.2e-13  Score=99.94  Aligned_cols=99  Identities=19%  Similarity=0.128  Sum_probs=74.2

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeecc-ccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEc
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAP-IWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAEN  558 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p-~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n  558 (591)
                      .+|..|....+...+.+++.|+|+++ ..+.++.+.+|+|+|+......|.....  ...+.+.+|.+++.|.|+|+|.|
T Consensus        16 ~~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~~--~~~~~~~~L~p~t~Y~~~V~A~n   93 (117)
T d1wj3a_          16 TPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNT--NKTSAELVLPIKEDYIIEVKATT   93 (117)
T ss_dssp             CCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEEE--SSSEEEEECCCSSCEEEEEEEEE
T ss_pred             CCcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeeec--eeeEEEeeccCCcEEEEEEEEEc
Confidence            44554444445567889999999974 3344568999999999887766655433  24667779999999999999999


Q ss_pred             CCcCCCCCCCcceEEecccccc
Q psy12425        559 VYGRSDPSTTSDLITTYGELLS  580 (591)
Q Consensus       559 ~~G~~~~s~~~~~~~t~~~~p~  580 (591)
                      .+|.|++|..+.+.++..++|+
T Consensus        94 ~~G~G~~S~~v~v~~~~~~~Ps  115 (117)
T d1wj3a_          94 DGGDGTSSEQIRIPRITSSGPS  115 (117)
T ss_dssp             SSCCCCBCCCEEECCCCCCCSC
T ss_pred             CCccCCCCCCEEEeccCCCCCC
Confidence            9999999987666566655553

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1e-12  Score=95.02  Aligned_cols=93  Identities=13%  Similarity=-0.001  Sum_probs=69.9

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeC-CCCceEEec--eeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH-PMSSWIRVG--NTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~-~~~~~~~~~--~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      ..|..+.+...+.+++.|+|++|...+ ..+..|.|+|+.. ....|..+.  ......++|.+|.+++.|.|+|+|.|.
T Consensus         9 ~~P~~p~~~~~~~~~i~v~W~pp~~~~-~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~   87 (106)
T d1cd9b2           9 ALDIGPDVVSHQPGCLWLSWKPWKPSE-YMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRS   87 (106)
T ss_dssp             ECCC-------CCSCEEEEEECCGGGT-TSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEES
T ss_pred             CCCCCCeEecCCCCEEEEEEcCcccCC-ccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEeC
Confidence            345566777778999999999887554 4789999999864 456787763  345678999999999999999999999


Q ss_pred             CcCCCCCCCcceEEecc
Q psy12425        560 YGRSDPSTTSDLITTYG  576 (591)
Q Consensus       560 ~G~~~~s~~~~~~~t~~  576 (591)
                      .|.|.+|+.+..++..+
T Consensus        88 ~g~g~wS~wS~~~~~~~  104 (106)
T d1cd9b2          88 SLPGFWSPWSPGLQLRP  104 (106)
T ss_dssp             SSCCCCCCCCCCEEECC
T ss_pred             CCCCCCcCCCCCeEecC
Confidence            99999998877766553

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.7e-13  Score=92.02  Aligned_cols=81  Identities=26%  Similarity=0.439  Sum_probs=64.8

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCC
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      |.|...+.+..+.+|+.+.|.|.+.|.|.| .+.|++++..+.....       .  .+.|.....+|+|.|+|.|.|..
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~-------~--~~~l~~~~~~d~G~Y~C~A~N~~   72 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------S--PSVLNVTGVTQSTMFSCEAHNLK   72 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------S--SEEEEECCCSSCEEEEEEEEETT
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC-------c--ceEEecCCccccEEEEEEEEcCC
Confidence            677888888889999999999999999987 8999999988765421       1  24555556679999999999999


Q ss_pred             cce-eeeeEEEE
Q psy12425        372 GVK-STKAELII  382 (591)
Q Consensus       372 g~~-~~~~~l~v  382 (591)
                      |.. +..+.|.|
T Consensus        73 G~~~S~~~~v~V   84 (85)
T d1rhfa2          73 GLASSRTATVHL   84 (85)
T ss_dssp             EEEECCCEEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            965 34566655

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.9e-13  Score=101.46  Aligned_cols=106  Identities=20%  Similarity=0.164  Sum_probs=84.5

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCc--------ceeeEEEEeeeCCC-CceEEeceeeeeEEEEcCcccCceE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGS--------NITNYIVEKREHPM-SSWIRVGNTRFTTMAITGLSPGHQY  550 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~--------~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~Y  550 (591)
                      ..|..+..+.+..++.+++.|+|++|..+++.        .+..|.+.++.... ..|..+.......++|.+|.|++.|
T Consensus        16 ~~~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~P~t~Y   95 (137)
T d1wk0a_          16 ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDY   95 (137)
T ss_dssp             HHTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESCSEEEECSCCTTCEE
T ss_pred             cCCCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEEEecCccEEEECCCCCCcEE
Confidence            44667777889999999999999988655442        45678888876543 4556666667789999999999999


Q ss_pred             EEEEEEEcCCcCCCCCCCcceEEeccccccCCCCCc
Q psy12425        551 EFRVYAENVYGRSDPSTTSDLITTYGELLSGMEAPI  586 (591)
Q Consensus       551 ~~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~~~  586 (591)
                      .|+|+|.|..|.|.+|.... ++|...+|..|.+|.
T Consensus        96 ~f~V~A~n~~G~g~~S~~~~-~~T~~~~P~~p~~p~  130 (137)
T d1wk0a_          96 HAKVQAEYNSIKGTPSEAEI-FTTLSCEPDIPNPPR  130 (137)
T ss_dssp             CEEEEEEETTEECCCCCCCC-EECCCSSSCCCSCSC
T ss_pred             EEEEEEEcCCcccCCCCCEE-EECCCCCCCCCCCCE
Confidence            99999999999999998765 577777777766664

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.8e-13  Score=95.51  Aligned_cols=88  Identities=22%  Similarity=0.293  Sum_probs=71.9

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceE-EeceeeeeEEEEcCcccCceEEEEEEEEcCCc
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI-RVGNTRFTTMAITGLSPGHQYEFRVYAENVYG  561 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G  561 (591)
                      ++|.++.+..++.+++.|+|++|.    +.+.+|.|.|+......+. .........+.|.+|.|++.|.|+|+|.|..|
T Consensus         3 ~aP~n~~~~~~s~~si~l~W~~p~----~~~~~Y~i~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   78 (92)
T d1qg3a1           3 GAPQNPNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG   78 (92)
T ss_dssp             CCCEEEEEEECSTTCEEEEEECCS----SCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEECSSC
T ss_pred             CcCCCCEEEEccCCEEEEEEEecC----CCccceEEeeeeccccccEEEEecCCccEEEECCCCCCcEEEEEEEEEeCCc
Confidence            678999999999999999999873    3578999999876554332 23455667999999999999999999999999


Q ss_pred             CCCCCCCcceEEec
Q psy12425        562 RSDPSTTSDLITTY  575 (591)
Q Consensus       562 ~~~~s~~~~~~~t~  575 (591)
                      .|++|....+ +|+
T Consensus        79 ~g~~S~~~~~-~T~   91 (92)
T d1qg3a1          79 EGPYSSLVSC-RTH   91 (92)
T ss_dssp             BCCCCCCEEE-ECC
T ss_pred             CcCCCCCEEE-EcC
Confidence            9999987654 443

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2e-13  Score=101.14  Aligned_cols=101  Identities=24%  Similarity=0.361  Sum_probs=78.0

Q ss_pred             CCCCCCCCeeee--ecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe----ceeeeeEEEEcCcccCceEEEEE
Q psy12425        481 RPDPPQFPTVED--IGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV----GNTRFTTMAITGLSPGHQYEFRV  554 (591)
Q Consensus       481 ~p~~p~~~~~~~--~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~~~Y~~~v  554 (591)
                      +|.+|.++.+..  .+.+++.|+|++|...+ +.+.+|.|+|+...+..|...    .....+.+.|.+|.+++.|.|+|
T Consensus         4 kP~pP~~~~v~~~~~~~~si~v~W~~p~~~~-~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V   82 (115)
T d1bqua2           4 KPNPPHNLSVINSEELSSILKLTWTNPSIKS-VIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI   82 (115)
T ss_dssp             ECCCCEEEEEECC--CCSCEEEEEECCGGGG-TSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEE
T ss_pred             ECCCCCCCEEEEeccCCCEEEEEEeeccccc-cceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEEE
Confidence            478888887754  56788999999877554 478999999998887777654    24556799999999999999999


Q ss_pred             EEEcCCcCCCCCCCcc--eEEeccccccCC
Q psy12425        555 YAENVYGRSDPSTTSD--LITTYGELLSGM  582 (591)
Q Consensus       555 ~A~n~~G~~~~s~~~~--~~~t~~~~p~~~  582 (591)
                      +|.|..|.|.+|..+.  .++|+..+|..+
T Consensus        83 ~a~~~~G~g~~S~~S~~~~~~T~~~~P~~~  112 (115)
T d1bqua2          83 RCMKEDGKGYWSDWSEEASGITYEDRPSKE  112 (115)
T ss_dssp             EEEETTSCSCCCCCCCCEEEEECCCHHHHH
T ss_pred             EEEeCCCccCCcCCcCCEEEECCCCCCCCC
Confidence            9999999987775433  346666665543

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.8e-13  Score=96.78  Aligned_cols=92  Identities=15%  Similarity=0.147  Sum_probs=75.9

Q ss_pred             CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCc
Q psy12425        482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYG  561 (591)
Q Consensus       482 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G  561 (591)
                      |.+|.++.+..++.+++.|+|++|.    +.+.+|+|.|+..++..|........+.++|.+|.|++.|.|+|+|.|..|
T Consensus         1 P~~P~~l~~~~~t~~si~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~~   76 (102)
T d2cuha1           1 PDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPN   76 (102)
T ss_dssp             CSSCEEEECCCCSSSCEEEEEECCS----SCCSEEEEEEECSSSCCEEEEEETTCSEEEECSCCSSSEEEEEEEEEETTE
T ss_pred             CcCCCccEEEEeCCCEEEEEEEeee----ccceeeEEEEEeccccceeeeeeeeeeeEEEccEEeeEEEEEEEEEEeCCC
Confidence            6789999999999999999999763    368899999998877777766666778999999999999999999999999


Q ss_pred             CCCCCCCcceEEeccccc
Q psy12425        562 RSDPSTTSDLITTYGELL  579 (591)
Q Consensus       562 ~~~~s~~~~~~~t~~~~p  579 (591)
                      .|.++..  .++|...+|
T Consensus        77 ~s~~~~~--~~~T~~~~P   92 (102)
T d2cuha1          77 LTSPASI--TFTTGLEAP   92 (102)
T ss_dssp             ECCCEEE--EEESCCCCT
T ss_pred             CcCCEEE--EEECCCCCC
Confidence            8877642  345554333

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=96.19  Aligned_cols=70  Identities=11%  Similarity=0.121  Sum_probs=57.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCC-ceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQP-MEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      ++.+++.+|+++.|.|.+.|.|+ ++|+|+|+|..+....+.. ...+  .+|.|.+++.+|+|.|+|.|.|..
T Consensus        13 ~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~-~~~~--~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          13 RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRW-AGMG--RRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             TTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEE-EEES--SEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEE-ecCC--CEEEECCCChhcCEEEEEEECCcc
Confidence            56789999999999999998664 6999999999886664433 2233  379999999999999999998754

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2e-12  Score=90.07  Aligned_cols=79  Identities=24%  Similarity=0.360  Sum_probs=66.4

Q ss_pred             cceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeeeEEE
Q psy12425        302 ANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI  381 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~  381 (591)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+...   .........+|.|.++..+|+|.|+|.|.|..|..+.++.|.
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~   87 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE   87 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS---EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceee---eeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEE
Confidence            44568999999999999999999999877665433   233445667899999999999999999999999998888888


Q ss_pred             Ee
Q psy12425        382 IM  383 (591)
Q Consensus       382 v~  383 (591)
                      |.
T Consensus        88 V~   89 (90)
T d1vcaa2          88 IY   89 (90)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.5e-14  Score=103.28  Aligned_cols=83  Identities=23%  Similarity=0.319  Sum_probs=64.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCce----------eEEEeCCeEEEEEcccCCCCceEEEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRF----------KFTVLDDYIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      +..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+......          +....  ..+|.|.+++.+|+|.|+|.|.
T Consensus        11 ~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~   88 (105)
T d1nbqa1          11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL--PTGITFKSVTREDTGTYTCMVS   88 (105)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE--TTEEECSCCCTTSCSEEEEEEE
T ss_pred             CCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeec--CceEEEecccccceeeEEEEEE
Confidence            56788999999999999999999999999976544322111          11111  1379999999999999999999


Q ss_pred             cCCeeeEEEEEEEEe
Q psy12425         72 NSSGSVSGTFTINIT   86 (591)
Q Consensus        72 n~~g~~~~~~~l~v~   86 (591)
                      |..|.....+.|.+.
T Consensus        89 n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          89 EEGGNSYGEVKVKLI  103 (105)
T ss_dssp             ETTSSCEECCEEECC
T ss_pred             ECCCCEEEEEEEEEE
Confidence            999998776665543

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.3e-13  Score=100.30  Aligned_cols=91  Identities=25%  Similarity=0.336  Sum_probs=72.3

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe---ceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV---GNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~---~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      ..+.||+++.+. .+.++|.|+|++|... +.++.+|.++|+... ..|...   .....+.+.|.+|.+++.|.|+|+|
T Consensus         6 s~~sPP~~~~~~-~t~~si~l~W~pp~~~-~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A   82 (108)
T d1v5ja_           6 SGLSPPRGLVAV-RTPRGVLLHWDPPELV-PKRLDGYVLEGRQGS-QGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVA   82 (108)
T ss_dssp             CCCCCCEEEEEE-ECSSSEEEEEECCSCC-SSCCCBEEEEEEETT-CCCEEEEEEECSSCCEEECCCCCTTSCEECCBEE
T ss_pred             CCCCcCCCeEEE-EcCCEEEEEEEecccC-CCceeEEEEEeeeee-eeeeeccccccceeeeEEEEeccCCcEEEEEEEE
Confidence            456888888775 4788999999987644 458999999998765 444433   3445678999999999999999999


Q ss_pred             EcCCcCCCCCCCcceEE
Q psy12425        557 ENVYGRSDPSTTSDLIT  573 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~~~  573 (591)
                      .|..|.|++|....+.|
T Consensus        83 ~n~~g~s~~S~~~~~~T   99 (108)
T d1v5ja_          83 FAGSFVSDPSNTANVST   99 (108)
T ss_dssp             EETTEEEEECSCCCCCC
T ss_pred             EeCCCEeCCcCceEEEC
Confidence            99999999998765533

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.7e-13  Score=98.88  Aligned_cols=87  Identities=17%  Similarity=0.181  Sum_probs=74.0

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      ..|++|.++.+.. ..+++.|+|++|..++ +.+.+|.|+|+......|........+.++|.+|.+++.|.|+|+|.|.
T Consensus        19 ~vP~~P~~~~~~~-~~~si~v~W~~p~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   96 (113)
T d1x5ia1          19 RVPEVPSSLHVRP-LVTSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNN   96 (113)
T ss_dssp             SCCCSCSEEEEEE-ETTEEEEEEECCSCTT-BCCCEEEEEECSSCGGGEEEECCTTCCEEEECSCCSSCEECCEEEEECS
T ss_pred             CCCCCCEeeeeee-CCCEEEEEEEccccCC-ccEEEEEEEeeeccccceeeeeeCCccEEEEeccccCcEEEEEEEEECC
Confidence            5688999988865 5679999999887554 4899999999987777777666667789999999999999999999999


Q ss_pred             CcCCCCCCC
Q psy12425        560 YGRSDPSTT  568 (591)
Q Consensus       560 ~G~~~~s~~  568 (591)
                      +|.|+++..
T Consensus        97 ~G~g~~~~~  105 (113)
T d1x5ia1          97 VGEGIPLYE  105 (113)
T ss_dssp             SCBCCCCCC
T ss_pred             CcCCCCeee
Confidence            999987654

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.1e-13  Score=94.32  Aligned_cols=84  Identities=25%  Similarity=0.295  Sum_probs=71.0

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      +.| +|.++.+..++.+++.|+|++|.   +..+.+|+++++..+...|...  .....+.++|.+|.|++.|.|+|+|.
T Consensus         5 ~vp-~P~~l~v~~~t~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~   80 (95)
T d2fnba_           5 EVP-QLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITL   80 (95)
T ss_dssp             CSC-CCTTCEEECCCSSCEEEECCCCC---CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEE
T ss_pred             CcC-cCCCeEEEEEcCCEEEEEEEecC---CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEE
Confidence            445 78999999999999999999863   3468999999998776666544  45567899999999999999999999


Q ss_pred             cCCcCCCCCC
Q psy12425        558 NVYGRSDPST  567 (591)
Q Consensus       558 n~~G~~~~s~  567 (591)
                      |..|.|+++.
T Consensus        81 ~~~g~s~p~~   90 (95)
T d2fnba_          81 INGGESAPTT   90 (95)
T ss_dssp             ETTEECCCCE
T ss_pred             eCCcEeCCEE
Confidence            9999988874

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-13  Score=97.12  Aligned_cols=89  Identities=16%  Similarity=0.236  Sum_probs=73.6

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccce-EEEEEEEeC
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRAVNK  370 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~a~n~  370 (591)
                      .|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+......  ........|.|.++..+|.| .|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee--eeeccceeEEEccccccccceEEEEEEEcC
Confidence            578888888899999999999999999999999999998776532221  22345568999999999999 799999999


Q ss_pred             CcceeeeeEEEE
Q psy12425        371 GGVKSTKAELII  382 (591)
Q Consensus       371 ~g~~~~~~~l~v  382 (591)
                      .|....++.|.|
T Consensus        80 ~G~~~~s~~l~V   91 (92)
T d2ifga1          80 VGRAEVSVQVNV   91 (92)
T ss_dssp             TEECCEEECCCC
T ss_pred             CCEEEEEEEEEE
Confidence            999877766654

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1e-12  Score=93.09  Aligned_cols=90  Identities=23%  Similarity=0.368  Sum_probs=74.3

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCC
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      +|.+.  ..+..+.+|+.+.|.|.+.+ +.+.+.|++++..+....++.+...+  .+|.|.++..+|.|.|+|.|.|..
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~--~~L~I~~v~~~d~G~Y~C~a~N~~   79 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPV   79 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTT--TEEEECSCCGGGCEEEEEEEESSS
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCc--eEEEEeccchhhceEEEEEEEeCC
Confidence            34443  35677899999999999876 56799999999999888887765443  379999999999999999999999


Q ss_pred             cce-eeeeEEEEecCC
Q psy12425        372 GVK-STKAELIIMTAP  386 (591)
Q Consensus       372 g~~-~~~~~l~v~~~p  386 (591)
                      |.. +..+.|.|.++|
T Consensus        80 g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          80 SVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             CCEECCCCEEEECCSC
T ss_pred             CCeEEEeEEEEEEcCC
Confidence            877 456899998776

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.3e-13  Score=102.20  Aligned_cols=97  Identities=27%  Similarity=0.529  Sum_probs=77.3

Q ss_pred             cCCcccC--CCCcccceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeee-----------------------------c
Q psy12425        384 TAPKFNV--PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES-----------------------------G  432 (591)
Q Consensus       384 ~~p~~~~--~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~-----------------------------~  432 (591)
                      .||.+..  +......+.+..|+.+.|.|.+.|.|.|.+.|++++..+..                             .
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            4666643  23344567889999999999999999999999997765421                             1


Q ss_pred             cceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEEEEecC
Q psy12425        433 GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD  480 (591)
Q Consensus       433 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~  480 (591)
                      .++.+........|.|.++..+|+|.|+|.|.|.+|..+..+.|.|.+
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            234555566778999999999999999999999999999999888753

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.39  E-value=1e-12  Score=93.11  Aligned_cols=83  Identities=14%  Similarity=0.254  Sum_probs=68.6

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEE--EeCCeEEEEEcceecccceEEEEEEEeCCccee-e
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF--AEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS-T  376 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~-~  376 (591)
                      .+..+..|+.+.|.|.+.|.|.+.+.|++++..+.......+.  ......+|.|.+++.+|+|.|+|.|.|..|... .
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   90 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH   90 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence            5777899999999999999999999999999988765554443  223345899999999999999999999999763 4


Q ss_pred             eeEEEE
Q psy12425        377 KAELII  382 (591)
Q Consensus       377 ~~~l~v  382 (591)
                      ++.|.|
T Consensus        91 s~~L~V   96 (97)
T d1biha3          91 SLKLTV   96 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            667766

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-12  Score=92.98  Aligned_cols=81  Identities=11%  Similarity=0.148  Sum_probs=63.1

Q ss_pred             eeeecCCeEEEEE------EeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee-
Q psy12425          5 LYIPEGDNTKVKI------FYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-   77 (591)
Q Consensus         5 ~~v~~G~~~~l~C------~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~-   77 (591)
                      ..+..|+...|.|      .+.++|.|.|.|+|||+.|..+.+. +...++  .|.|.+++.+|+|.|+|.|.|..|.. 
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~-~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-FSGVKD--RLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSS-EEEETT--EEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcE-EEecCC--EEEEcccccccCcEEEEEEEECcCCEE
Confidence            4588999999999      5678999999999999999766443 333333  69999999999999999999877643 


Q ss_pred             ---EEEEEEEEecC
Q psy12425         78 ---SGTFTINITGL   88 (591)
Q Consensus        78 ---~~~~~l~v~~~   88 (591)
                         ...+.+.|...
T Consensus        86 ~~vt~~i~~~v~~~   99 (103)
T d1iray2          86 YPITRVIEFITLEE   99 (103)
T ss_dssp             EEEEEEEEEEEECC
T ss_pred             EEEEEEEEEEECCC
Confidence               33455555543

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.5e-12  Score=94.14  Aligned_cols=90  Identities=14%  Similarity=0.071  Sum_probs=66.3

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCC-CCceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP-MSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~-~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      ..|..+.+...+.+++.|+|++|...++ .+..|.|.|+... ...|...  .......++|.+|.+++.|.|+|+|.|.
T Consensus         8 ~~P~~p~~~~~~~~~v~l~W~pp~~~~~-~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~   86 (105)
T d2d9qb2           8 TMDPSPEAAPPQAGCLQLSWEPWQPGLH-INQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRW   86 (105)
T ss_dssp             ECCC-------CCSCEEEEEECCGGGTT-SCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEEC
T ss_pred             CCCCCCEeecCCCCeEEEEEcCCCCCCc-eeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEEeC
Confidence            4566677777889999999998875544 7889999998654 4566554  3445678999999999999999999999


Q ss_pred             CcCCCCCCCcceEE
Q psy12425        560 YGRSDPSTTSDLIT  573 (591)
Q Consensus       560 ~G~~~~s~~~~~~~  573 (591)
                      .|.|.+|+.+..++
T Consensus        87 ~g~G~~S~wS~~~~  100 (105)
T d2d9qb2          87 PLPGHWSDWSPSLE  100 (105)
T ss_dssp             SSCCCCCCCCCCEE
T ss_pred             CCCCCCcCCCCCEE
Confidence            99988887765544

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.6e-12  Score=90.76  Aligned_cols=80  Identities=26%  Similarity=0.379  Sum_probs=66.3

Q ss_pred             eccccceeccccEEEEEEEc-CCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceee
Q psy12425        298 PLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST  376 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~  376 (591)
                      .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.....  ...++   .|.|.++...|+|.|+|.|.|..|....
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~   82 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQG   82 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--EEETT---EEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc--Eeece---EEEEecCCcccCEEEEEEEEECCCEEEE
Confidence            34567788999999999996 688899999998887765432  22233   7999999999999999999999998888


Q ss_pred             eeEEEE
Q psy12425        377 KAELII  382 (591)
Q Consensus       377 ~~~l~v  382 (591)
                      .+.|.|
T Consensus        83 ~~~l~V   88 (89)
T d1gl4b_          83 TATLHV   88 (89)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888776

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=6e-13  Score=94.42  Aligned_cols=92  Identities=27%  Similarity=0.397  Sum_probs=78.9

Q ss_pred             CCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEc
Q psy12425        189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN  268 (591)
Q Consensus       189 ~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n  268 (591)
                      +|.+|..+.+.....++++|+|.+|..+++.++.+|.|+++..+...|............+++.+|.++..|.|+++|.|
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~n   80 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVN   80 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEE
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEEC
Confidence            46778888888899999999999988777778999999999999888987765555667899999999999999999999


Q ss_pred             CCCCCCCCCCcc
Q psy12425        269 EAGLSLPSSASN  280 (591)
Q Consensus       269 ~~g~~~~s~~~~  280 (591)
                      ..|.+.++....
T Consensus        81 ~~G~s~~s~~~~   92 (98)
T d1x5ya1          81 IAGRSEPATLLQ   92 (98)
T ss_dssp             TTEECCCCCCSS
T ss_pred             CCcCCCCcCCCC
Confidence            999887665443

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=8.2e-14  Score=104.27  Aligned_cols=92  Identities=18%  Similarity=0.211  Sum_probs=69.6

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCce-------EE-e---------ceeeeeEEEEc
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW-------IR-V---------GNTRFTTMAIT  542 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~-------~~-~---------~~~~~~~~~i~  542 (591)
                      +.|.+|.++.+.. +.+++.|+|++|..++| .|++|.|+|+......+       .. .         .......+.|.
T Consensus         6 ~~P~aP~~v~v~~-~~~si~l~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   83 (123)
T d1wfta_           6 SGPGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHI   83 (123)
T ss_dssp             SCCCCCEEEEEEE-CSSEEEEEEECCSSCCS-SCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCC
T ss_pred             CCCcCCcccEEEe-CCCEEEEEecCchhcCC-ceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEc
Confidence            5788999998865 67899999998876655 89999999976543221       11 1         11223456778


Q ss_pred             CcccCceEEEEEEEEcCCcCCCCCCCcceEE
Q psy12425        543 GLSPGHQYEFRVYAENVYGRSDPSTTSDLIT  573 (591)
Q Consensus       543 ~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~  573 (591)
                      +|.+++.|.|+|+|.|.+|.|++|....+.+
T Consensus        84 ~L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t  114 (123)
T d1wfta_          84 DYTSRPAIVFRISAKNEKGYGPATQIRWLQG  114 (123)
T ss_dssp             BCSSSCEEEEEEEEBSSSSBCCCEEEEEECC
T ss_pred             CCCCCCEEEEEEEEecCCcCCCCCCcEEEEe
Confidence            9999999999999999999999988654433

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-12  Score=94.84  Aligned_cols=91  Identities=24%  Similarity=0.315  Sum_probs=71.3

Q ss_pred             CCCCCCCCeee----eecCCeeEEEeecccc---CCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEE
Q psy12425        481 RPDPPQFPTVE----DIGHDSLALVWRAPIW---DGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFR  553 (591)
Q Consensus       481 ~p~~p~~~~~~----~~~~~~v~l~W~~p~~---~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  553 (591)
                      +|++|.++.+.    ..+.+++.|+|++|..   +++..+..|.+.++......|..........++|.+|.+++.|.|+
T Consensus         2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   81 (104)
T d3d48r2           2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQ   81 (104)
T ss_dssp             CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEEEETCSEEEECC--CCCEEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeeccccccEEEECCCCCCCEEEEE
Confidence            58899888774    3467789999998753   2344678999999988888888777777789999999999999999


Q ss_pred             EEEEcCCcC-CCCCCCcce
Q psy12425        554 VYAENVYGR-SDPSTTSDL  571 (591)
Q Consensus       554 v~A~n~~G~-~~~s~~~~~  571 (591)
                      |+|.|..|. |++|....+
T Consensus        82 VrA~n~~G~ws~wS~~~~v  100 (104)
T d3d48r2          82 VRCKPDHGYWSAWSPATFI  100 (104)
T ss_dssp             EEEEESSSCCCCCCCCEEE
T ss_pred             EEEEeCCCCCCCCcCCEEE
Confidence            999999998 999987643

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.7e-13  Score=95.51  Aligned_cols=93  Identities=24%  Similarity=0.167  Sum_probs=65.7

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCCCc--ceeeEEEEeeeCCCCceEEe----ceeeeeEEEEcCcccCceEEEEE
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGS--NITNYIVEKREHPMSSWIRV----GNTRFTTMAITGLSPGHQYEFRV  554 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~--~~~~y~v~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~~~Y~~~v  554 (591)
                      +|.+|.++.+...+.+++.|+|.+|...++.  ....|.+.++......|...    .......+.|.+|.|++.|.|+|
T Consensus         1 kP~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV   80 (101)
T d1iarb2           1 KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARV   80 (101)
T ss_dssp             CCCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEE
T ss_pred             CcccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEE
Confidence            5889999999999999999999987544432  34579999988776655433    34455788999999999999999


Q ss_pred             EEEcCCcCCCCCCCcceEE
Q psy12425        555 YAENVYGRSDPSTTSDLIT  573 (591)
Q Consensus       555 ~A~n~~G~~~~s~~~~~~~  573 (591)
                      +|.|..|.|.+|+.+..++
T Consensus        81 rA~~~~g~g~wSewS~~v~   99 (101)
T d1iarb2          81 RAWAQAYNTTWSEWSPSTK   99 (101)
T ss_dssp             EEECGGGTCCCCCCCCCEE
T ss_pred             EEEcCCCCCCCcCCCCCEE
Confidence            9999999999998775543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-12  Score=94.64  Aligned_cols=80  Identities=24%  Similarity=0.469  Sum_probs=65.9

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecC-------CeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE-------RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      +....+.|.+.|.|.|.+.|+++|..+..+.........       ....|.|.++...|.|.|+|.|.|..|..+..+.
T Consensus        15 ~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~   94 (107)
T d1he7a_          15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM   94 (107)
T ss_dssp             CCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEE
Confidence            333445568999999999999999998766655443221       2467999999999999999999999999999999


Q ss_pred             EEecCCC
Q psy12425        476 IQISDRP  482 (591)
Q Consensus       476 ~~v~~~p  482 (591)
                      |.+..+|
T Consensus        95 v~v~~~P  101 (107)
T d1he7a_          95 AAFMDNP  101 (107)
T ss_dssp             ECCCSCT
T ss_pred             EEEEcCC
Confidence            9999888

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.9e-13  Score=98.43  Aligned_cols=83  Identities=20%  Similarity=0.283  Sum_probs=62.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECCEEeec----------CCceeEEEeCCeEEEEEcccCCCCceEEEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQS----------DDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      +..+.|.+|+++.|.|.+.|.|.|.|.|+|++..+..          ....+....  ..+|.|.+++.+|+|.|+|.|.
T Consensus         8 ~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~tL~I~~v~~~D~G~Y~C~a~   85 (102)
T d1f97a1           8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS--SSGITFSSVTRKDNGEYTCMVS   85 (102)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE--TTEEEESCCCGGGCEEEEEEEE
T ss_pred             CCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEec--CCEEEEeECCccCCEEEEEEEE
Confidence            4578899999999999999999999999986532211          101111111  1379999999999999999999


Q ss_pred             cCCeeeEEEEEEEEe
Q psy12425         72 NSSGSVSGTFTINIT   86 (591)
Q Consensus        72 n~~g~~~~~~~l~v~   86 (591)
                      |..|.....+.+.|.
T Consensus        86 n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          86 EEGGQNYGEVSIHLT  100 (102)
T ss_dssp             ETTSSSEEEEEEEEE
T ss_pred             ECCCCEEEEEEEEEE
Confidence            999988766555543

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.4e-14  Score=103.02  Aligned_cols=83  Identities=14%  Similarity=0.199  Sum_probs=64.9

Q ss_pred             ceeeeecCCeEEEEEEe-ccCCCceEEEEECCEEeecCCceeEEE-------eCCeEEEEEcccCCCCceEEEEEEEcCC
Q psy12425          3 NALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTV-------LDDYIIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      .+..+.+|++++|.|.+ .|.|.+.+.|+|+|..+....+.....       ......|.|.+++.+|.|.|+|.|.|..
T Consensus        10 ~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   89 (104)
T d1nbqa2          10 IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY   89 (104)
T ss_dssp             CBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSS
T ss_pred             CCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECC
Confidence            35678999999999998 479999999999999886654433221       1223579999999999999999999999


Q ss_pred             eeeEEE--EEEEE
Q psy12425         75 GSVSGT--FTINI   85 (591)
Q Consensus        75 g~~~~~--~~l~v   85 (591)
                      |....+  ++|.|
T Consensus        90 G~~~~s~~v~v~v  102 (104)
T d1nbqa2          90 GTPMTSNAVRMEA  102 (104)
T ss_dssp             SCCEECCCBCCEE
T ss_pred             CceEEEEEEEEEE
Confidence            987654  44444

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.3e-13  Score=96.76  Aligned_cols=90  Identities=22%  Similarity=0.237  Sum_probs=72.6

Q ss_pred             CCCCCCCeeeeecCCeeEEEeecccc-CCCcceeeEEEEeeeCCCCceEE------eceeeeeEEEEcCcccCceEEEEE
Q psy12425        482 PDPPQFPTVEDIGHDSLALVWRAPIW-DGGSNITNYIVEKREHPMSSWIR------VGNTRFTTMAITGLSPGHQYEFRV  554 (591)
Q Consensus       482 p~~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~~~~y~v~~~~~~~~~~~~------~~~~~~~~~~i~~l~~~~~Y~~~v  554 (591)
                      +.+|.++.+...+.+++.|+|.+|.. +.++.+.+|.+.|+......+..      ........+.|.+|.|++.|.|+|
T Consensus         9 ~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   88 (109)
T d1va9a1           9 DGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVV   88 (109)
T ss_dssp             SSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEE
T ss_pred             CCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEEEEE
Confidence            35888899999999999999998644 34468899999998765433321      124456799999999999999999


Q ss_pred             EEEcCCcCCCCCCCcce
Q psy12425        555 YAENVYGRSDPSTTSDL  571 (591)
Q Consensus       555 ~A~n~~G~~~~s~~~~~  571 (591)
                      +|.|..|.|++|..+.+
T Consensus        89 ~a~n~~G~g~~S~~v~~  105 (109)
T d1va9a1          89 QAFNRAGTGPSSSEINA  105 (109)
T ss_dssp             EEEETTEECCCCCCEEC
T ss_pred             EEEcCCcCCCCCCCEEE
Confidence            99999999999987654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.37  E-value=1.1e-12  Score=92.57  Aligned_cols=83  Identities=20%  Similarity=0.287  Sum_probs=68.4

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .|.+...+.++.+.+|+.+.|.|.+.|.|.+ .+.|++++..+......... .....+|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL-RKDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE-CTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee-cccceEEEEeccChhcCeEEEEEEEeC
Confidence            5777778888889999999999999999876 79999999988665543332 223347999999999999999999999


Q ss_pred             Cccee
Q psy12425        371 GGVKS  375 (591)
Q Consensus       371 ~g~~~  375 (591)
                      .|...
T Consensus        81 ~G~~~   85 (94)
T d1biha1          81 AGVAS   85 (94)
T ss_dssp             TEEEE
T ss_pred             CCEEE
Confidence            99753

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.37  E-value=6.6e-13  Score=94.26  Aligned_cols=89  Identities=21%  Similarity=0.269  Sum_probs=70.4

Q ss_pred             CCCeEEeeccccceecc---ccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEE
Q psy12425        291 KAPEIIVPLRNANAIQN---HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g---~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      .+|.+...+.+..+.+|   +.+.|.|.+.|.|.|.+.|++++..+...........++ ..|.|..+..+|+|.|+|.|
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEEEEE
Confidence            35777777777766555   789999999999999999999999887665554444433 47888899999999999999


Q ss_pred             EeCCcce-eeeeEE
Q psy12425        368 VNKGGVK-STKAEL  380 (591)
Q Consensus       368 ~n~~g~~-~~~~~l  380 (591)
                      .|..|.. +..+.|
T Consensus        82 ~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          82 TNARGTVVSREASL   95 (97)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             EECCCEEEEEEEEE
Confidence            9999976 334554

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.7e-12  Score=93.63  Aligned_cols=94  Identities=14%  Similarity=0.265  Sum_probs=73.9

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCC---CCeeEEecCCccCCC---CCceEEEEe------CCeEEEEEcceeccc
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCP---KPTISWLKGSREITP---SARHHIFAE------GDTYTLIINSVYGVD  359 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p---~~~v~W~~~~~~~~~---~~~~~~~~~------~~~~~l~i~~~~~~d  359 (591)
                      .|.|+..+.+..+..|+++.|.|.+.|.|   .|.|.|++++.....   ..++.....      ....+|.|.+++..|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            35677778889999999999999999998   578999998754321   122222211      124579999999999


Q ss_pred             ceEEEEEEEeCCcceeeeeEEEEecC
Q psy12425        360 ADEYVCRAVNKGGVKSTKAELIIMTA  385 (591)
Q Consensus       360 ~g~y~c~a~n~~g~~~~~~~l~v~~~  385 (591)
                      +|.|+|.|.|..|..+.++.|.|..+
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEec
Confidence            99999999999999999999999753

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.5e-13  Score=92.20  Aligned_cols=73  Identities=12%  Similarity=0.094  Sum_probs=61.3

Q ss_pred             cceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEEE
Q psy12425        396 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVK  475 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~~  475 (591)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....             .+..++..|+|.|+|.|.|..|..+..+.
T Consensus        12 ~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~   78 (84)
T d2oz4a3          12 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTREVT   78 (84)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             ccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEcCCCEEEEEEE
Confidence            34667899999999999999999999999987765322             23457789999999999999999998888


Q ss_pred             EEecCC
Q psy12425        476 IQISDR  481 (591)
Q Consensus       476 ~~v~~~  481 (591)
                      |.|..|
T Consensus        79 l~V~~P   84 (84)
T d2oz4a3          79 VNVLSP   84 (84)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            888653

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=7e-13  Score=95.34  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=75.1

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeecc-ccCCCcceeeEEEEeeeCCCCce---EE-eceeeeeEEEEcCcccCceEEEEEE
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAP-IWDGGSNITNYIVEKREHPMSSW---IR-VGNTRFTTMAITGLSPGHQYEFRVY  555 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p-~~~~~~~~~~y~v~~~~~~~~~~---~~-~~~~~~~~~~i~~l~~~~~Y~~~v~  555 (591)
                      |+.+|.++.+..++.+++.|+|+++ ....++.+.+|.|.++..+...+   .. ........++|.+|.+++.|.|+|+
T Consensus         1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~   80 (101)
T d1x4ya1           1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQ   80 (101)
T ss_dssp             CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEE
Confidence            4678999999999999999999864 34555789999999987654332   22 2344557899999999999999999


Q ss_pred             EEcCCcCCCCCCCcceEEec
Q psy12425        556 AENVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       556 A~n~~G~~~~s~~~~~~~t~  575 (591)
                      |.|..|.|++|....+ +|.
T Consensus        81 a~n~~G~s~~S~~~~~-~T~   99 (101)
T d1x4ya1          81 CFNEGGESEFSNVMIC-ETK   99 (101)
T ss_dssp             EECTTCCCCCCCCEEE-ECC
T ss_pred             EEcCCCCCCCCCcEEE-Ecc
Confidence            9999999999987654 443

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.3e-13  Score=94.86  Aligned_cols=92  Identities=21%  Similarity=0.226  Sum_probs=72.7

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCC---CcceeeEEEEeeeCCCCceE-EeceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDG---GSNITNYIVEKREHPMSSWI-RVGNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~---~~~~~~y~v~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      |+.||.++.+...+.+++.|+|++|....   ...+..|.+.++..+...+. ...+.....++|.||.|++.|.|+|+|
T Consensus         1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   80 (100)
T d1x5ja1           1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMV   80 (100)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEECCEEEE
T ss_pred             CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCCCccEEEECCCCCCCEEEEEEEE
Confidence            45788999999999999999999864322   24567899998776544332 334455678999999999999999999


Q ss_pred             EcCCcCCCCCCCcceE
Q psy12425        557 ENVYGRSDPSTTSDLI  572 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~~  572 (591)
                      .|..|.|++|......
T Consensus        81 ~n~~g~s~~S~~~~~~   96 (100)
T d1x5ja1          81 TKGRRSSTWSMTAHGT   96 (100)
T ss_dssp             ECSSCBCCCCCCCCEE
T ss_pred             EeCCcCcCCCCeEEEE
Confidence            9999999999986553

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-12  Score=95.46  Aligned_cols=92  Identities=23%  Similarity=0.294  Sum_probs=71.0

Q ss_pred             CCCCCCCeeee--ecCCeeEEEeeccccCCCcceeeEEEEeeeCCCC---ceEEe-ceeeeeEEEEcCcccCceEEEEEE
Q psy12425        482 PDPPQFPTVED--IGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS---SWIRV-GNTRFTTMAITGLSPGHQYEFRVY  555 (591)
Q Consensus       482 p~~p~~~~~~~--~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~---~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~  555 (591)
                      +.+|.++.+..  .+..++.|+|++|...+ +.+.+|.++++.....   .|... .......+.|.+|.|++.|.|+|+
T Consensus        12 ~~pP~~~~v~~~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   90 (111)
T d1x5ka1          12 TSPPKDVTVVSKEGKPKTIIVNWQPPSEAN-GKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQ   90 (111)
T ss_dssp             CSCCEEEEEEECSSCTTCEEEEEECCSCCS-SCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCSSSEEEEEEE
T ss_pred             CCCCCCcEEEEecCCCCEEEEEEEccccCC-CceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCCCCCEEEEEEE
Confidence            35677777654  46779999999887554 4899999999765443   34433 445567899999999999999999


Q ss_pred             EEcCCcCCCCCCCcceEEec
Q psy12425        556 AENVYGRSDPSTTSDLITTY  575 (591)
Q Consensus       556 A~n~~G~~~~s~~~~~~~t~  575 (591)
                      |.|..|.|++|..+.+ +|+
T Consensus        91 A~n~~G~g~~S~~v~~-~T~  109 (111)
T d1x5ka1          91 ARNSKGMGPMSEAVQF-RTP  109 (111)
T ss_dssp             EECSSCBCCCCCCEEE-ECC
T ss_pred             EEcCCCCcCCCCCEEE-ECC
Confidence            9999999999987654 444

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.1e-12  Score=89.89  Aligned_cols=82  Identities=26%  Similarity=0.448  Sum_probs=67.8

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCC--ceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK  374 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~  374 (591)
                      .++.+..+..|+.+.|.|.+. .|.+.+.|++++..+..+.  ++.+..++..++|.|.++..+|+|.|+|.|.|.    
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----   79 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG----   79 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE----
T ss_pred             cCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc----
Confidence            445778899999999999984 6888999999998876554  466778888999999999999999999999663    


Q ss_pred             eeeeEEEEe
Q psy12425        375 STKAELIIM  383 (591)
Q Consensus       375 ~~~~~l~v~  383 (591)
                      ..++.|.|.
T Consensus        80 ~~~a~l~V~   88 (90)
T d1x44a1          80 QSSAKLSVD   88 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEE
Confidence            445666664

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=1.1e-12  Score=90.63  Aligned_cols=81  Identities=25%  Similarity=0.268  Sum_probs=69.9

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR  562 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~  562 (591)
                      ++|.++++..++.+++.|+|++|.    +.+.+|.|.|+..++..+........+.+.|.+|.|++.|.|+|+|.|..|.
T Consensus         2 ~~P~nl~v~~~~~~s~~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~   77 (86)
T d1tdqa3           2 DSPRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQ   77 (86)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCC----SCCSEEEEEEECSSSCCEEEEEESSCSEEEECCCCTTCCEEEEEEEEETTEE
T ss_pred             ccCCCCEEEEecCCEEEEEEeCCC----CCccceEEEEecccccceEEEeCCCccEEEECCCccccEEEEEEEEEcCCCE
Confidence            578889999999999999999863    3688999999987766666666667789999999999999999999999998


Q ss_pred             CCCCC
Q psy12425        563 SDPST  567 (591)
Q Consensus       563 ~~~s~  567 (591)
                      |.++.
T Consensus        78 s~p~~   82 (86)
T d1tdqa3          78 SLEST   82 (86)
T ss_dssp             CCCEE
T ss_pred             ECCEE
Confidence            87764

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-12  Score=93.20  Aligned_cols=88  Identities=22%  Similarity=0.334  Sum_probs=70.7

Q ss_pred             CCCCCCCeeeee------cCCeeEEEeecccc---CCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEE
Q psy12425        482 PDPPQFPTVEDI------GHDSLALVWRAPIW---DGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEF  552 (591)
Q Consensus       482 p~~p~~~~~~~~------~~~~v~l~W~~p~~---~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~  552 (591)
                      |+||.++.+...      ...++.|+|++|..   +++..+..|+++|+..+...|........+.+.|.+|.+++.|.|
T Consensus         1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~~~~~~~~i~~L~~~t~Y~f   80 (106)
T d1axib2           1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEV   80 (106)
T ss_dssp             CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCCBSSSEEEEEEEETTSCEEE
T ss_pred             CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeeecccceEEECCCCCCCEEEE
Confidence            678888876432      23479999998864   334467899999999999999998777778999999999999999


Q ss_pred             EEEEEcCCcC--CCCCCCc
Q psy12425        553 RVYAENVYGR--SDPSTTS  569 (591)
Q Consensus       553 ~v~A~n~~G~--~~~s~~~  569 (591)
                      +|+|.+..|.  |++|...
T Consensus        81 rVRa~~~~~g~ws~wS~~v   99 (106)
T d1axib2          81 RVRSKQRNSGNYGEFSEVL   99 (106)
T ss_dssp             EEEEEETTSSCCCCCCCCE
T ss_pred             EEEEEECCCCCCCCCCCCE
Confidence            9999997653  6777653

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.3e-12  Score=89.81  Aligned_cols=87  Identities=18%  Similarity=0.194  Sum_probs=72.5

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      .|.+|.++.+..++.+++.|+|++|.   ...+..|.|+++......|..........+++.+|.|++.|.|+|+|.+..
T Consensus         2 ~P~~P~nl~v~~~~~~~v~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frVRa~~~~   78 (95)
T d2b5ic1           2 IPWAPENLTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNP   78 (95)
T ss_dssp             ECCCCEEEEEEEEETTEEEEEEECSS---CSTTCEEEEEEEETTCSSCEEEEECSSCEEEECSCCTTSCEEEEEEEECCS
T ss_pred             CCcCCCCCEEEEEeCCEEEEEECCCC---CceeEEEEEEEEcCCCceeeEeeecccceeEcCCCCCCCEEEEEEEEeeCC
Confidence            48999999999999999999999874   235689999999998888888766677899999999999999999999776


Q ss_pred             cC---CCCCCCcc
Q psy12425        561 GR---SDPSTTSD  570 (591)
Q Consensus       561 G~---~~~s~~~~  570 (591)
                      |.   |.+|+.+.
T Consensus        79 ~~~~~g~WSeWS~   91 (95)
T d2b5ic1          79 LCGSAQHWSEWSH   91 (95)
T ss_dssp             SSCCCCCCCCCCC
T ss_pred             CCCCCCCccCCCC
Confidence            53   33555443

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.5e-12  Score=95.55  Aligned_cols=90  Identities=16%  Similarity=0.263  Sum_probs=69.6

Q ss_pred             cceeecCCCeEEEEEeeeccC---CCeEEEeeCCeEee---eccceEEEe------cCCeeEEEEeccCCCcceeEEEEE
Q psy12425        396 DTAYFDKGENVVVKIPFTGYP---KPKITWYRDNEVIE---SGGHFHVET------SERHAILTIRDASNVDTAPYRVVA  463 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~~~~p---~~~v~W~~~~~~~~---~~~~~~~~~------~~~~~~l~i~~~~~~~~g~y~c~a  463 (591)
                      ....+..|+.+.|.|.+.|.|   .|.|.|++++....   ....+.+..      ......|.|.++...|+|.|+|.|
T Consensus         8 ~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   87 (113)
T d2dava1           8 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEV   87 (113)
T ss_dssp             CCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEE
T ss_pred             ceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEE
Confidence            346678999999999999998   57999999875432   122222211      122467999999999999999999


Q ss_pred             EcCCCccceEEEEEecCCCCCC
Q psy12425        464 ENDLGMDSAIVKIQISDRPDPP  485 (591)
Q Consensus       464 ~n~~g~~~~~~~~~v~~~p~~p  485 (591)
                      .|..|..+..+.|.|..++..+
T Consensus        88 ~N~~G~~~~~~~L~V~~~~~~~  109 (113)
T d2dava1          88 TYKDKFDSCSFDLEVHESTGTT  109 (113)
T ss_dssp             ECSSCEEEECCEEEEECCCCSC
T ss_pred             EeCCCEEEEEEEEEEEcCCCcC
Confidence            9999999999999998776543

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.7e-12  Score=97.87  Aligned_cols=99  Identities=17%  Similarity=0.070  Sum_probs=74.8

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeecccc-CCCcceeeEEEEeeeCCCCc---------eEEeceeeeeEEEEcCcccCce
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIW-DGGSNITNYIVEKREHPMSS---------WIRVGNTRFTTMAITGLSPGHQ  549 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~~~~y~v~~~~~~~~~---------~~~~~~~~~~~~~i~~l~~~~~  549 (591)
                      .|+.+|.++.+..++.+++.|+|++|.. .....+..|.+.++......         +..........++|.+|.|++.
T Consensus        13 ~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   92 (125)
T d1uena_          13 LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSH   92 (125)
T ss_dssp             CCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCE
T ss_pred             CCCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCCE
Confidence            3456899999999999999999998753 23457888888886543211         1222345567899999999999


Q ss_pred             EEEEEEEEcCCcCCCCCCCcceEEeccccc
Q psy12425        550 YEFRVYAENVYGRSDPSTTSDLITTYGELL  579 (591)
Q Consensus       550 Y~~~v~A~n~~G~~~~s~~~~~~~t~~~~p  579 (591)
                      |.|+|+|.|..|.|++|....+ +|.+..|
T Consensus        93 Y~~~V~A~n~~G~g~~S~~~~~-~T~~~~p  121 (125)
T d1uena_          93 YTLNVRVVNGKGEGPASPDRVF-NTPEGSG  121 (125)
T ss_dssp             EEEEEEEEESSCEEEECCCEEE-ECCCCCS
T ss_pred             EEEEEEEEeCCcccCCCCCEEE-ECCCCCc
Confidence            9999999999999999988765 4444333

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.7e-12  Score=90.35  Aligned_cols=81  Identities=16%  Similarity=0.202  Sum_probs=68.8

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR  562 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~  562 (591)
                      ++|.++.+..++.+++.|+|++|.    +.+.+|++.|+..++..+....+...+.++|.||.|++.|.|+|+|.|..|.
T Consensus         3 ~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~   78 (93)
T d2cuma1           3 EAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSL   78 (93)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEECTTSCEEEEEECSSCSEEEECSCCTTCEEEEEEEEEBTTBC
T ss_pred             CcCCCCEEEEeCCCEEEEEEEccc----cccccEEEEEEccccccEEEEECCCccEEEEeCccCCCEEEEEEEEEeCCCC
Confidence            578889999999999999999863    3688999999987665555555666789999999999999999999999999


Q ss_pred             CCCCC
Q psy12425        563 SDPST  567 (591)
Q Consensus       563 ~~~s~  567 (591)
                      |+++.
T Consensus        79 s~~~~   83 (93)
T d2cuma1          79 LPPVS   83 (93)
T ss_dssp             CCCEE
T ss_pred             CCCEE
Confidence            88764

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.34  E-value=1.8e-12  Score=94.77  Aligned_cols=91  Identities=24%  Similarity=0.371  Sum_probs=67.7

Q ss_pred             CCeEEee-ccccceeccccEEEEEEEcCCCCCeeEEecCCccCCC----CCc--eEE-----E--EeCCeEEEEEcceec
Q psy12425        292 APEIIVP-LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP----SAR--HHI-----F--AEGDTYTLIINSVYG  357 (591)
Q Consensus       292 ~p~~~~~-~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~----~~~--~~~-----~--~~~~~~~l~i~~~~~  357 (591)
                      +|.+... +.+..+..|+.+.|.|.+.|.|.|.|.|++++.....    ...  ...     .  .......|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            5666554 5778899999999999999999999999986543211    111  110     0  111235799999999


Q ss_pred             ccceEEEEEEEeCCcceeeeeEEEE
Q psy12425        358 VDADEYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       358 ~d~g~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      +|+|.|+|.|.|..|....++.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999988888877

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.34  E-value=2e-12  Score=89.62  Aligned_cols=81  Identities=25%  Similarity=0.355  Sum_probs=68.6

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcC
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGR  562 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~  562 (591)
                      ++|.++.+..++.+++.|+|++|.    +.+.+|+|.|+......+....+.....++|.+|.|++.|.|+|+|.|..|.
T Consensus         1 DaP~~l~v~~~t~~sv~v~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~   76 (87)
T d1qr4a1           1 DNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHK   76 (87)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECTTCCEEEEEECTTCSEEEEESCCSSCEEEEEEEEESSSCB
T ss_pred             CcCcCcEEEEecCCEEEEEEECCC----CCcceeEEEeecCCcceeEEeCCCCcCEEEECCCCcCCEEEEEEEEEcCCCC
Confidence            478899999999999999999863    3578999999987765554445566689999999999999999999999999


Q ss_pred             CCCCC
Q psy12425        563 SDPST  567 (591)
Q Consensus       563 ~~~s~  567 (591)
                      |+++.
T Consensus        77 s~~~~   81 (87)
T d1qr4a1          77 SKPTT   81 (87)
T ss_dssp             CCCEE
T ss_pred             ccCEE
Confidence            88764

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.33  E-value=3.1e-12  Score=88.78  Aligned_cols=80  Identities=21%  Similarity=0.308  Sum_probs=68.7

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe-ceeeeeEEEEcCcccCceEEEEEEEEcCCc
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVYG  561 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G  561 (591)
                      ++|.++++..++.+++.|+|++|.    +.+.+|.|.|+......|... .+.....+.|.||.|++.|.|+|.|.|..|
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~~~----~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   77 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFE   77 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECCCS----SCCSEEEEEEEETTCCCCEEEEEETTCCEEEECSCCSSCEEEEEEEEEETTE
T ss_pred             cCCcceEEEEecCCEEEEEEEccc----EeeceEEEEEEeccCCceEEEEecCCccEEEECCCCCCCEEEEEEEEEeCCC
Confidence            478999999999999999999763    368899999998877666554 455667999999999999999999999999


Q ss_pred             CCCCC
Q psy12425        562 RSDPS  566 (591)
Q Consensus       562 ~~~~s  566 (591)
                      .|++.
T Consensus        78 ~s~p~   82 (88)
T d1qr4a2          78 ESEPI   82 (88)
T ss_dssp             ECCCE
T ss_pred             CcCCE
Confidence            98764

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-13  Score=101.87  Aligned_cols=87  Identities=18%  Similarity=0.282  Sum_probs=69.9

Q ss_pred             CceeeeecCCeEEEEEEeccC-CCceEEEEECCEEeecC--CceeEEE--eCC--eEEEEEcccCCCC-ceEEEEEEEcC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD-QPMEVSLTKNGRVVQSD--DRFKFTV--LDD--YIIIFIKEIRKED-AGDYTVNLSNS   73 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~--~~~~~~~--~~~--~~~l~i~~~~~~d-~g~Y~c~~~n~   73 (591)
                      |..+.+.+|+++.|.|.+.|. |.+.+.|++++..+...  .++.+..  ..+  .+.|.|.+++.+| +|.|+|.|.|.
T Consensus        13 ~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~   92 (115)
T d2crya1          13 TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNS   92 (115)
T ss_dssp             ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECS
T ss_pred             CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEEC
Confidence            356778999999999999984 56689999999988655  3343332  222  2579999999999 69999999999


Q ss_pred             CeeeEEEEEEEEecC
Q psy12425         74 SGSVSGTFTINITGL   88 (591)
Q Consensus        74 ~g~~~~~~~l~v~~~   88 (591)
                      .|..+..+.|.|...
T Consensus        93 ~G~~~~~~~L~V~~~  107 (115)
T d2crya1          93 FGSDTEIIRLKEQGS  107 (115)
T ss_dssp             SCEEEEEECCCCSCS
T ss_pred             CCeEEEEEEEEEECC
Confidence            999999999988754

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.33  E-value=1.5e-12  Score=89.28  Aligned_cols=73  Identities=14%  Similarity=0.236  Sum_probs=58.7

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |....|.+|++++|.|.+.+.|.+ .+.|++||..+....          ..|.|.+++.+|+|.|+|.|.|..++  ..
T Consensus        11 P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~----------~~l~i~~v~~~dsG~Y~C~a~ns~~S--~~   78 (85)
T d2fcba1          11 PQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQTSLS--DP   78 (85)
T ss_dssp             SCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEECTTSBCC--CC
T ss_pred             CCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc----------cceEEeeccccCCcEEEEECCCCccc--cc
Confidence            566789999999999999987765 689999999885542          26889999999999999999886543  33


Q ss_pred             EEEEEe
Q psy12425         81 FTINIT   86 (591)
Q Consensus        81 ~~l~v~   86 (591)
                      +.|.|.
T Consensus        79 v~l~V~   84 (85)
T d2fcba1          79 VHLTVL   84 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555553

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.2e-12  Score=91.34  Aligned_cols=90  Identities=20%  Similarity=0.271  Sum_probs=65.6

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEec---CCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK---GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      +|.|. .+++..+.+|+.+.|.|.+.|.|.|.+.|.+   ++..+.......+.......+|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            57776 4788999999999999999999988655432   3333322222223333334579999999999999999999


Q ss_pred             eCCccee-eeeEEEE
Q psy12425        369 NKGGVKS-TKAELII  382 (591)
Q Consensus       369 n~~g~~~-~~~~l~v  382 (591)
                      |..|... ..+.|.|
T Consensus        81 N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          81 TEGGVGISNYAELVV   95 (96)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEE
Confidence            9999864 4467766

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.33  E-value=2.3e-12  Score=88.04  Aligned_cols=64  Identities=20%  Similarity=0.199  Sum_probs=53.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCe
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG   75 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g   75 (591)
                      |....|.+|++++|.|.+.|.|.+ .+.|+++|..+....          .+|.|.+++.+|+|.|+|.|.|..+
T Consensus        12 P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1          12 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----------SSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC----------SEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             CCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc----------eeeEecCCcccCCEEEEEEccCCCc
Confidence            667889999999999999998877 467789998775442          2799999999999999999987644

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.9e-11  Score=86.50  Aligned_cols=87  Identities=22%  Similarity=0.410  Sum_probs=66.6

Q ss_pred             eeccccceeccccEEEEEEEcCCCC-CeeEEecC-CccCCC-CCceEEE-EeCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPK-PTISWLKG-SREITP-SARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~-~~v~W~~~-~~~~~~-~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      ..+....+..|+.+.|.|.+.|.|. +.+.|+++ +..+.. ..++.+. ..+...+|.|.++..+|+|.|+|.|.|..|
T Consensus         5 i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   84 (97)
T d1epfa1           5 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG   84 (97)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             EECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCC
Confidence            3445667889999999999999985 79999984 444433 4455544 445567899999999999999999999998


Q ss_pred             ce-eeeeEEEEe
Q psy12425        373 VK-STKAELIIM  383 (591)
Q Consensus       373 ~~-~~~~~l~v~  383 (591)
                      .. ...+.|.|.
T Consensus        85 ~~~~~tv~l~V~   96 (97)
T d1epfa1          85 TQSEATVNVKIF   96 (97)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cEEEEEEEEEEE
Confidence            75 345666653

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.3e-12  Score=89.88  Aligned_cols=80  Identities=26%  Similarity=0.356  Sum_probs=66.7

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      ++|.++.+..++.+++.|+|++|.    +.+.+|+|.|+......|...  .+...+.+.|.+|.|++.|.|+|+|.|..
T Consensus         2 d~P~~l~v~~vt~~sv~l~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   77 (89)
T d1fnfa3           2 DSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGR   77 (89)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETT
T ss_pred             ccCcCCEEEEecCCEEEEEEEeCC----CEEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcCC
Confidence            578899999999999999999863    367899999987766554332  35566799999999999999999999999


Q ss_pred             cCCCCC
Q psy12425        561 GRSDPS  566 (591)
Q Consensus       561 G~~~~s  566 (591)
                      |.|++.
T Consensus        78 g~s~p~   83 (89)
T d1fnfa3          78 EESPLL   83 (89)
T ss_dssp             EECCCE
T ss_pred             cCcCCE
Confidence            987764

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.5e-12  Score=90.87  Aligned_cols=81  Identities=23%  Similarity=0.343  Sum_probs=68.1

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      ++|.++++..++.+++.|+|++|.    +.+.+|++.|+......+...  .....+.+.|.+|.|++.|.|+|.|.|..
T Consensus         3 d~P~~l~v~~vt~~sv~l~W~~p~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   78 (94)
T d1j8ka_           3 DRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDD   78 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCS----SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSS
T ss_pred             CCCCCCEEEEecCCEEEEEEeCCC----ccccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence            578999999999999999999863    357899999988776555443  45567899999999999999999999999


Q ss_pred             cCCCCCC
Q psy12425        561 GRSDPST  567 (591)
Q Consensus       561 G~~~~s~  567 (591)
                      |.|.+..
T Consensus        79 g~S~p~~   85 (94)
T d1j8ka_          79 MESQPLI   85 (94)
T ss_dssp             CCCCCEE
T ss_pred             CCcCCEE
Confidence            9887654

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.31  E-value=5e-13  Score=92.58  Aligned_cols=83  Identities=20%  Similarity=0.267  Sum_probs=71.6

Q ss_pred             EeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS  375 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~  375 (591)
                      ..++++..+.+|+++.|.|.+ +.|.+.+.|+++|..+..+.++.+..++..++|.|.++...|+|.|+|.|.|..    
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~----   79 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK----   79 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB----
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE----
Confidence            345577889999999999997 578999999999999999999999999999999999999999999999986643    


Q ss_pred             eeeEEEEe
Q psy12425        376 TKAELIIM  383 (591)
Q Consensus       376 ~~~~l~v~  383 (591)
                      .++.|.|.
T Consensus        80 ~sa~l~V~   87 (89)
T d1tiua_          80 SAANLKVK   87 (89)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            34555554

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.3e-12  Score=90.06  Aligned_cols=82  Identities=17%  Similarity=0.243  Sum_probs=68.1

Q ss_pred             CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCce-EE-eceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        482 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW-IR-VGNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       482 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~-~~-~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      +++|.++.+..++.+++.|+|++|.    +.+.+|+|.|+..+...+ .. ..+.....++|.+|.|++.|.|+|+|.|.
T Consensus         2 ld~P~~l~v~~~s~~s~~l~W~~p~----~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   77 (90)
T d1tena_           2 LDAPSQIEVKDVTDTTALITWFKPL----AEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRG   77 (90)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCCcEEEEecCCEEEEEEEeCc----eEeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEeC
Confidence            5789999999999999999999763    367899999987765333 22 24556789999999999999999999999


Q ss_pred             CcCCCCCC
Q psy12425        560 YGRSDPST  567 (591)
Q Consensus       560 ~G~~~~s~  567 (591)
                      .|.|+++.
T Consensus        78 ~g~s~~~~   85 (90)
T d1tena_          78 DMSSNPAK   85 (90)
T ss_dssp             TEECCCEE
T ss_pred             CCEeCCEE
Confidence            99988753

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7.7e-14  Score=100.10  Aligned_cols=91  Identities=22%  Similarity=0.233  Sum_probs=73.0

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe----ceeeeeEEEEcCcccCceEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV----GNTRFTTMAITGLSPGHQYEFRVY  555 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~~~Y~~~v~  555 (591)
                      .+|+.|..+.+..++.+++.|+|++|..++| .+.+|+|+|+......+...    .......+.+.+|.+++ |.|+|+
T Consensus         3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~~~ng-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~~rV~   80 (102)
T d2dtge1           3 KADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIR   80 (102)
T ss_dssp             CCCCCCCCCCCCSSSSSCCCCCCCCCCSCSS-CEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-ECCCCC
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEEeCCCCcc-eEEEeeeEEEecCCCCceeeeeeecccceEEEEEeccceee-EEEEEE
Confidence            4678888888888899999999998876555 79999999987654433221    33455678999999985 999999


Q ss_pred             EEcCCcCCCCCCCcceE
Q psy12425        556 AENVYGRSDPSTTSDLI  572 (591)
Q Consensus       556 A~n~~G~~~~s~~~~~~  572 (591)
                      |.|..|.|++|.+..+.
T Consensus        81 A~n~~G~g~~S~~v~f~   97 (102)
T d2dtge1          81 ATSLAGNGSWTEPTYFY   97 (102)
T ss_dssp             EEETTBCCCCCCCCEEC
T ss_pred             EEcCCccCCCCCCEEEE
Confidence            99999999999986553

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.4e-12  Score=89.50  Aligned_cols=79  Identities=15%  Similarity=0.259  Sum_probs=64.6

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEcCCCC-CeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPK-PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      ..+|.+...+..+.+.+|+.+.|.|.+.+.|. ++|.|++++..+....+..... +.  +|.|.++..+|+|.|+|.|.
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~-~~--~L~I~~v~~~D~G~Y~C~a~   80 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM-GR--RLLLRSVQLHDSGNYSCYRA   80 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEE-SS--EEEECSCCGGGCEEEEEESS
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecC-CC--EEEECCCChhcCEEEEEEEC
Confidence            45678888778888999999999999998765 5899999998887665544433 33  79999999999999999997


Q ss_pred             eCC
Q psy12425        369 NKG  371 (591)
Q Consensus       369 n~~  371 (591)
                      |..
T Consensus        81 n~~   83 (93)
T d1n26a1          81 GRP   83 (93)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            643

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.1e-12  Score=87.78  Aligned_cols=73  Identities=16%  Similarity=0.191  Sum_probs=56.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc-eEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM-EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGT   80 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~~~   80 (591)
                      |....|.+|++++|.|.+.+.|.+ .+.|++++..+....          ..|.|.+++.+|+|.|+|.|.|..++  ..
T Consensus         8 P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~i~~v~~~d~G~Y~C~a~~s~~S--~~   75 (82)
T d1f2qa1           8 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKCQHQQVNES--EP   75 (82)
T ss_dssp             SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------SEEEECSCCGGGCEEEEEECTTSSCC--CC
T ss_pred             CCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc----------ceeEECCCChhhCCcEEEEecCCCCc--cc
Confidence            566789999999999999998876 567889998775432          26999999999999999999876543  34


Q ss_pred             EEEEEe
Q psy12425         81 FTINIT   86 (591)
Q Consensus        81 ~~l~v~   86 (591)
                      +.|.|.
T Consensus        76 v~l~V~   81 (82)
T d1f2qa1          76 VYLEVF   81 (82)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            566654

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=5.6e-12  Score=88.79  Aligned_cols=81  Identities=26%  Similarity=0.299  Sum_probs=67.1

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe----ceeeeeEEEEcCcccCceEEEEEEEEc
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV----GNTRFTTMAITGLSPGHQYEFRVYAEN  558 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~~~Y~~~v~A~n  558 (591)
                      ++|.++.+..++.+++.|+|++|.    ..+.+|.+.|+...+..+...    .....+.++|.+|.|++.|.|+|+|.|
T Consensus         2 daP~~l~v~~~~~~sv~v~W~~p~----~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   77 (92)
T d1tdqa2           2 DAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVM   77 (92)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEE
T ss_pred             ccCcCCEEEEecCCEEEEEEEecC----CcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEe
Confidence            478889999999999999999863    367899999998765444322    345667899999999999999999999


Q ss_pred             CCcCCCCCC
Q psy12425        559 VYGRSDPST  567 (591)
Q Consensus       559 ~~G~~~~s~  567 (591)
                      ..|.|.++.
T Consensus        78 ~~g~s~p~~   86 (92)
T d1tdqa2          78 NSKQSIPAT   86 (92)
T ss_dssp             TTEECCCEE
T ss_pred             CCCEecCEE
Confidence            999998764

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-11  Score=88.99  Aligned_cols=91  Identities=15%  Similarity=0.299  Sum_probs=68.0

Q ss_pred             eEEeeccccceeccccEEEEEEEcCCC-CCeeEEecCCccCCC---CCceEEEEeCC--eEEEEEcceecccceEEEEEE
Q psy12425        294 EIIVPLRNANAIQNHNAQFQCTITGCP-KPTISWLKGSREITP---SARHHIFAEGD--TYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       294 ~~~~~~~~~~~~~g~~~~l~c~~~~~p-~~~v~W~~~~~~~~~---~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      .++..++...+..|+.+.|.|.+.|.| .|.+.|++++..+..   ........++.  ...|.|.++..+|+|.|+|.|
T Consensus         5 ~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   84 (104)
T d2aw2a1           5 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSA   84 (104)
T ss_dssp             ECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEE
Confidence            344455667789999999999999998 489999998765532   22222222222  447999999999999999999


Q ss_pred             EeCCccee-eeeEEEEec
Q psy12425        368 VNKGGVKS-TKAELIIMT  384 (591)
Q Consensus       368 ~n~~g~~~-~~~~l~v~~  384 (591)
                      .|..|... .++.|.|..
T Consensus        85 ~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          85 NFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EETTEEEECCCEEEEEEC
T ss_pred             EcCCCeEEEEEEEEEEEE
Confidence            99999764 467777753

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.3e-11  Score=86.50  Aligned_cols=88  Identities=20%  Similarity=0.305  Sum_probs=70.4

Q ss_pred             CCCeEEeeccc-cceeccccEEEEEEEcCCCCCeeEEecCCccCCCC-CceEEEEeCCeEEEEEcceecccceEEEEEEE
Q psy12425        291 KAPEIIVPLRN-ANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-ARHHIFAEGDTYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       291 ~~p~~~~~~~~-~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      .+|.|...+.+ ..+.+|+.+.|.|.+. .|.+.+.|++++..+..+ .++.+...++.++|.|.++...|+|.|+|.|.
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            45666666554 4688999999999985 588999999999988764 46778888889999999999999999999996


Q ss_pred             eCCcceeeeeEEEEe
Q psy12425        369 NKGGVKSTKAELIIM  383 (591)
Q Consensus       369 n~~g~~~~~~~l~v~  383 (591)
                      |    ...++.|.|.
T Consensus        83 n----~~~s~~l~V~   93 (94)
T d1pd6a_          83 G----EKCSTELFVK   93 (94)
T ss_dssp             T----EEECCEEEEE
T ss_pred             e----EEEEEEEEEE
Confidence            5    3445556553

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.2e-12  Score=90.03  Aligned_cols=79  Identities=29%  Similarity=0.432  Sum_probs=66.5

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      ++|.++++..++.+++.|+|++|.    +.+.+|.|+++..+...|...  .....+.+.|.+|.|++.|.|+|+|.|..
T Consensus         2 daP~nl~v~~~~~~s~~l~W~~p~----~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~   77 (89)
T d1fnha3           2 DAPSNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNN   77 (89)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECCS----SCCSEEEEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESSS
T ss_pred             ccCcCCEEEEecCCEEEEEEeCCC----cCCceEEEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcCC
Confidence            478899999999999999999863    368899999998776666544  34456789999999999999999999999


Q ss_pred             cCCCC
Q psy12425        561 GRSDP  565 (591)
Q Consensus       561 G~~~~  565 (591)
                      |.|++
T Consensus        78 g~S~p   82 (89)
T d1fnha3          78 QKSEP   82 (89)
T ss_dssp             CEEEE
T ss_pred             CEeCC
Confidence            98765

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.29  E-value=7.9e-13  Score=95.11  Aligned_cols=79  Identities=16%  Similarity=0.141  Sum_probs=64.0

Q ss_pred             cceeecCCCeEEEEEee-eccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceEE
Q psy12425        396 DTAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIV  474 (591)
Q Consensus       396 ~~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~~  474 (591)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+................|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV   91 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEEE
Confidence            45678999999999997 78999999999999776543333333444566899999999999999999999999876543

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.5e-12  Score=85.90  Aligned_cols=80  Identities=11%  Similarity=0.118  Sum_probs=63.8

Q ss_pred             cccceeccccEEEEEEEcCC-CCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eee
Q psy12425        300 RNANAIQNHNAQFQCTITGC-PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STK  377 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~  377 (591)
                      ....+.+|+.+.|+|.+.+. +...+.|++++..+.....        ...|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~--------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~   79 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE--------NHNISITNATVEDSGTYYCTGKVWQLDYESEP   79 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC--------SSEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc--------cceEEEeeeeeecCcEEEEEEEeCCCCeEeee
Confidence            34557899999999999664 5668999999987754321        2269999999999999999999988865 466


Q ss_pred             eEEEEecCCc
Q psy12425        378 AELIIMTAPK  387 (591)
Q Consensus       378 ~~l~v~~~p~  387 (591)
                      +.|.|..+|.
T Consensus        80 v~i~V~~~Pr   89 (89)
T d1f2qa2          80 LNITVIKAPR   89 (89)
T ss_dssp             EEEEEECSCC
T ss_pred             EEEEEEeCCC
Confidence            7888888763

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.7e-12  Score=88.26  Aligned_cols=81  Identities=25%  Similarity=0.443  Sum_probs=64.5

Q ss_pred             CCCCCeeeeec--CCeeEEEeeccccCCCcceeeEEEEeeeCCC-CceEEe-ceeeeeEEEEcCcccCceEEEEEEEEcC
Q psy12425        484 PPQFPTVEDIG--HDSLALVWRAPIWDGGSNITNYIVEKREHPM-SSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENV  559 (591)
Q Consensus       484 ~p~~~~~~~~~--~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~  559 (591)
                      +|..+.+...+  .+++.|+|++|.   +..+.+|+|+|+..++ ..|... .+.....++|.||.|++.|.|+|.|.|.
T Consensus         2 aP~~~~vt~~~~~~~s~~vsW~~P~---~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~~   78 (93)
T d1owwa_           2 GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQ   78 (93)
T ss_dssp             CCCEEECCCCSSCTTCEEEEEECCS---SSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEES
T ss_pred             cCcccEEEEccCCCCEEEEEeeccc---ccceeEEEEEEeeccccceeeeeccCCCccEEEECCcccCcEEEEEEEEEeC
Confidence            56666666554  479999999873   3579999999997654 345444 4566789999999999999999999999


Q ss_pred             CcCCCCCC
Q psy12425        560 YGRSDPST  567 (591)
Q Consensus       560 ~G~~~~s~  567 (591)
                      .|.|+.+.
T Consensus        79 ~G~s~~~~   86 (93)
T d1owwa_          79 YGHQEVTR   86 (93)
T ss_dssp             SSCEEEEE
T ss_pred             CCccCcEE
Confidence            99988774

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.5e-11  Score=85.93  Aligned_cols=79  Identities=28%  Similarity=0.347  Sum_probs=65.1

Q ss_pred             CCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEE--eceeeeeEEEEcCcccCceEEEEEEEEcCCcCC
Q psy12425        486 QFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR--VGNTRFTTMAITGLSPGHQYEFRVYAENVYGRS  563 (591)
Q Consensus       486 ~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~  563 (591)
                      +++++..++.+++.|+|++|.    +.+.+|.|.|...++..+..  ..+...+.+.|.||.|++.|.|+|.|.|..|.|
T Consensus         1 rnl~v~~~t~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s   76 (91)
T d1fnaa_           1 RDLEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDS   76 (91)
T ss_dssp             CCCEEEEECSSCEEEECCCCS----SCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCS
T ss_pred             CCCEEEEeCCCEEEEEEEccc----eEecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCccC
Confidence            468899999999999999863    36789999998876554432  245566799999999999999999999999999


Q ss_pred             CCCCC
Q psy12425        564 DPSTT  568 (591)
Q Consensus       564 ~~s~~  568 (591)
                      +++..
T Consensus        77 ~~~s~   81 (91)
T d1fnaa_          77 PASSK   81 (91)
T ss_dssp             SCSCC
T ss_pred             CCcCC
Confidence            87654

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-11  Score=91.23  Aligned_cols=84  Identities=19%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             eecCCeeEEEeeccccCCCcceeeEEEEeeeCC----CCceEEe--ceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCC
Q psy12425        492 DIGHDSLALVWRAPIWDGGSNITNYIVEKREHP----MSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDP  565 (591)
Q Consensus       492 ~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~----~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~  565 (591)
                      .++.++|.|+|++|. + ...+.+|+|.|+...    ...|...  ......++.|.||.|++.|.|+|+|.|..|.|++
T Consensus        26 ~~s~tsi~v~W~~p~-~-~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~  103 (120)
T d1ujta_          26 VLTPTTVQVTWTVDR-Q-PQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMD  103 (120)
T ss_dssp             CCBTTEEEEEEEESS-C-CSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCC
T ss_pred             EeCCCeEEEEecCCC-C-CCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcCC
Confidence            357899999999874 3 347899999998643    2456554  3455678999999999999999999999999999


Q ss_pred             CCCcceEEeccc
Q psy12425        566 STTSDLITTYGE  577 (591)
Q Consensus       566 s~~~~~~~t~~~  577 (591)
                      |....+.|.+.+
T Consensus       104 S~~~~~~T~e~~  115 (120)
T d1ujta_         104 SESKTVRTTEES  115 (120)
T ss_dssp             CCCEEEEECSSC
T ss_pred             CCCEEEEeCCCC
Confidence            998766555543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.7e-12  Score=91.36  Aligned_cols=83  Identities=10%  Similarity=0.107  Sum_probs=65.2

Q ss_pred             CceeeeecCCeEEEEEEecc-CCCc--eEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeeeE
Q psy12425          2 PNALYIPEGDNTKVKIFYAG-DQPM--EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS   78 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~   78 (591)
                      |.+..|.+|+.++|.|.+.| .|.+  ++.|+|+++.+......   ......+|.|.....+|.|.|+|.|.|..|...
T Consensus        11 p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~---~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~   87 (103)
T d1iama1          11 PLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV---GEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQG   87 (103)
T ss_dssp             CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC---TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGT
T ss_pred             CCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc---cccceEEEEEeeehhHCCCEEEEEEEeCCCCcc
Confidence            55667899999999999987 5654  68899999988654221   122346899999999999999999999999887


Q ss_pred             EEEEEEEec
Q psy12425         79 GTFTINITG   87 (591)
Q Consensus        79 ~~~~l~v~~   87 (591)
                      ..+.+.+..
T Consensus        88 ~~~~~~~s~   96 (103)
T d1iama1          88 LELFENTSA   96 (103)
T ss_dssp             SCEEEEECC
T ss_pred             CeEeeeEcC
Confidence            777777653

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.1e-12  Score=90.32  Aligned_cols=81  Identities=21%  Similarity=0.298  Sum_probs=64.7

Q ss_pred             ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEE----e--cC------CeeEEEEeccCCCcce-eEEEEE
Q psy12425        397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE----T--SE------RHAILTIRDASNVDTA-PYRVVA  463 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~--~~------~~~~l~i~~~~~~~~g-~y~c~a  463 (591)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+.........    .  ..      ..+.|.|.+++..|.| .|+|.|
T Consensus        11 ~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A   90 (107)
T d1iray3          11 TMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFA   90 (107)
T ss_dssp             EEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEE
T ss_pred             EEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEE
Confidence            355678999999999999999999999999888644322111    0  00      1468999999999999 599999


Q ss_pred             EcCCCccceEEEEE
Q psy12425        464 ENDLGMDSAIVKIQ  477 (591)
Q Consensus       464 ~n~~g~~~~~~~~~  477 (591)
                      .|..|..+..+.|.
T Consensus        91 ~N~~G~~~~~i~L~  104 (107)
T d1iray3          91 KNTHGIDAAYIQLI  104 (107)
T ss_dssp             ECSSCEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEE
Confidence            99999998888776

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.9e-12  Score=87.45  Aligned_cols=80  Identities=28%  Similarity=0.477  Sum_probs=68.2

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe-ceeeeeEEEEcCcccCceEEEEEEEEcCCc
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-GNTRFTTMAITGLSPGHQYEFRVYAENVYG  561 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G  561 (591)
                      .||.++++..++.+++.|+|.+|.    +++.+|++.|+...+..|... .......+.|.+|.|++.|.|+|+|.|..|
T Consensus         3 spP~~l~v~~~~~~si~v~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   78 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA   78 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEECCS----SCCCCEEEEEEESSSSCCEEEECCTTCSEEEEESCCTTCEEEEEEEEEETTE
T ss_pred             CcCCCCEEEEecCCEEEEEEECCC----CCCceeEEEEEEccCCceEEEecCCCccEEEeCCCCCCcEEEEEEEEEeCCC
Confidence            578999999999999999999763    368999999998776555544 456678999999999999999999999999


Q ss_pred             CCCCC
Q psy12425        562 RSDPS  566 (591)
Q Consensus       562 ~~~~s  566 (591)
                      .|++.
T Consensus        79 ~s~p~   83 (90)
T d1fnha2          79 RSSPV   83 (90)
T ss_dssp             ECCCE
T ss_pred             CcCCE
Confidence            98754

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8.4e-13  Score=97.27  Aligned_cols=101  Identities=21%  Similarity=0.272  Sum_probs=72.6

Q ss_pred             CCCCCCCCCeeee-ecCCeeEEEeeccccC-----CCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEE
Q psy12425        480 DRPDPPQFPTVED-IGHDSLALVWRAPIWD-----GGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYE  551 (591)
Q Consensus       480 ~~p~~p~~~~~~~-~~~~~v~l~W~~p~~~-----~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~  551 (591)
                      .+|.+|.++.+.. .+..++.|+|++|..+     .+..+.+|++.+..   ..+...  ...+...+.|.+|.+++.|.
T Consensus         9 ~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~---~~~~~~~~~~~~~~~~~i~~L~~~t~Y~   85 (117)
T d2cspa1           9 GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKG---QRVAEVIFPTADSTAVELVRLRSLEAKG   85 (117)
T ss_dssp             CCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSS---SEEEEECCTTCSEEEEESHHHHHHTCSC
T ss_pred             CCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEeec---ccceeeeeeccceeeeeccCCCCCcEEE
Confidence            4567888888754 5667899999987543     23467777776432   222222  23455688999999999999


Q ss_pred             EEEEEEcCCcCCCCCCCcceEEeccccccCCCC
Q psy12425        552 FRVYAENVYGRSDPSTTSDLITTYGELLSGMEA  584 (591)
Q Consensus       552 ~~v~A~n~~G~~~~s~~~~~~~t~~~~p~~~~~  584 (591)
                      |+|+|.|..|.|..|.... +++...+|+.|.+
T Consensus        86 v~V~A~n~~G~s~~S~~v~-i~t~~~vP~~P~P  117 (117)
T d2cspa1          86 VTVRTLSAQGESVDSAVAA-VPPELLVPPTPHP  117 (117)
T ss_dssp             BEEEEEESSCCCCCCSCBC-CCHHHHSCCCCCC
T ss_pred             EEEEEEcCCCcCCCCCCEE-eeCCCCCCcccCC
Confidence            9999999999999998764 4666666666643

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.25  E-value=1.1e-11  Score=85.34  Aligned_cols=77  Identities=8%  Similarity=0.134  Sum_probs=60.2

Q ss_pred             ccceeccccEEEEEEEcC-CCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eeee
Q psy12425        301 NANAIQNHNAQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKA  378 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~~  378 (591)
                      ...+.+|+.+.|.|.+.+ .|.+.+.|++++..+..        ......|.|.++..+|+|.|+|.|.|..|.. +..+
T Consensus         9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~--------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v   80 (88)
T d2fcba2           9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF--------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPV   80 (88)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE--------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc--------cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeE
Confidence            345789999999999964 56778999999866431        2223379999999999999999999998875 4567


Q ss_pred             EEEEecC
Q psy12425        379 ELIIMTA  385 (591)
Q Consensus       379 ~l~v~~~  385 (591)
                      .|.|..|
T Consensus        81 ~l~V~~P   87 (88)
T d2fcba2          81 TITVQAP   87 (88)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            7777653

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.1e-12  Score=89.39  Aligned_cols=82  Identities=13%  Similarity=0.090  Sum_probs=62.2

Q ss_pred             CCceeeeecCCeEEEEEEeccCCCceEEEEECCEEeecC----------CceeEEEeCCeEEEEEcccCCCCceEEEEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSD----------DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNL   70 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~   70 (591)
                      +++.+....|++|+|.|.+. .|.+.|.|++++..+...          .+.++.......+|+|.+++++|+|.|+|.+
T Consensus         1 ~s~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~   79 (93)
T d1ccza1           1 FSQQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES   79 (93)
T ss_dssp             CEEEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEEC
T ss_pred             CCcEEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEE
Confidence            45789999999999999874 788899999998766321          1223333344568999999999999999999


Q ss_pred             EcCCeeeEEEEEEEE
Q psy12425         71 SNSSGSVSGTFTINI   85 (591)
Q Consensus        71 ~n~~g~~~~~~~l~v   85 (591)
                      .|..++..  +.|+|
T Consensus        80 ~n~~~t~~--~~l~V   92 (93)
T d1ccza1          80 PNITDTMK--FFLYV   92 (93)
T ss_dssp             TTCCSCEE--EEEEE
T ss_pred             ECCCcEEE--EEEEE
Confidence            88766554  45544

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.9e-12  Score=90.43  Aligned_cols=85  Identities=14%  Similarity=0.017  Sum_probs=68.9

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      .||++|.++++...+..++.|+|++|. +++. .++|.+.++......|...  .......+.+.+|.+++.|.|+|+|.
T Consensus         2 ~PP~~P~n~~~~~~~~~si~~~W~p~~-~~~~-~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~   79 (95)
T d1bqua1           2 LPPEKPKNLSCIVNEGKKMRCEWDGGR-ETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE   79 (95)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCS-CCSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEE
T ss_pred             cCcCCCeeeEEEEccCCEEEEEEeCcc-cCCC-ceEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEEE
Confidence            478999999999999999999999875 4554 4799999988765555443  34455677888999999999999999


Q ss_pred             cCCcCCCCC
Q psy12425        558 NVYGRSDPS  566 (591)
Q Consensus       558 n~~G~~~~s  566 (591)
                      |.+|.+.++
T Consensus        80 N~~G~s~S~   88 (95)
T d1bqua1          80 NALGKVTSD   88 (95)
T ss_dssp             ETTEEEECC
T ss_pred             eCCccccCC
Confidence            999988744

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.4e-12  Score=87.24  Aligned_cols=80  Identities=23%  Similarity=0.358  Sum_probs=65.4

Q ss_pred             CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEE--eceeeeeEEEEcCcccCceEEEEEEEEcCCc
Q psy12425        484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIR--VGNTRFTTMAITGLSPGHQYEFRVYAENVYG  561 (591)
Q Consensus       484 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G  561 (591)
                      +|.++++...+.+++.|+|++|.   +..+.+|.|+|+...+..+..  ......+.+.|.+|.|++.|.|+|+|.|..|
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   79 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQH   79 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT---TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             cCCceEEEEeCCCEEEEEEEecC---CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCCC
Confidence            68889999999999999999763   346889999998776544332  2345667899999999999999999999999


Q ss_pred             CCCCC
Q psy12425        562 RSDPS  566 (591)
Q Consensus       562 ~~~~s  566 (591)
                      .|++.
T Consensus        80 ~S~p~   84 (91)
T d1fnfa2          80 ESTPL   84 (91)
T ss_dssp             ECCCE
T ss_pred             CCCCE
Confidence            87654

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5e-11  Score=86.39  Aligned_cols=92  Identities=25%  Similarity=0.447  Sum_probs=75.3

Q ss_pred             cCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEE
Q psy12425         87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAV  166 (591)
Q Consensus        87 ~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~  166 (591)
                      +.|++|..++.+.....+++.|+|.+|..+++..+..|.++++......+...........+.+.+|.+++.|.|+|+|.
T Consensus         9 ~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~   88 (107)
T d2crma1           9 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCI   88 (107)
T ss_dssp             CCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEEEE
T ss_pred             CCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeecCCccEEEEeccCCCCEEEEEEEEE
Confidence            45666666655566788999999999988888889999999987776665555556677889999999999999999999


Q ss_pred             ccCCCCCCCCcc
Q psy12425        167 NENGMGPPLEGI  178 (591)
Q Consensus       167 n~~g~~~~~~~~  178 (591)
                      |..|.+..+...
T Consensus        89 n~~G~s~~S~~v  100 (107)
T d2crma1          89 SDGGQSAVSESL  100 (107)
T ss_dssp             ETTEECCCCCCC
T ss_pred             CCCcCcCCCCcE
Confidence            999988877543

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.3e-11  Score=90.17  Aligned_cols=91  Identities=24%  Similarity=0.433  Sum_probs=64.6

Q ss_pred             cCCCeEEeeccccceeccccEEEEEEEc-CCCCCeeEEecCCccCCCCCceE--------EEEeCCeEEEEEcceecccc
Q psy12425        290 AKAPEIIVPLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHH--------IFAEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       290 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~  360 (591)
                      +..|.+..+   ..+..|+.+.|.|.+. |.|.+.+.|++++..+.......        .........|.|.+++.+|+
T Consensus         3 P~~p~~~~~---~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~   79 (110)
T d1f97a2           3 PSKPTISVP---SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS   79 (110)
T ss_dssp             CCCCEEECC---SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGC
T ss_pred             CccceeCCC---CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCC
Confidence            344544432   3578899999999985 89999999999987664433221        22233344799999999999


Q ss_pred             eEEEEEEEeCCcceeee--eEEEEe
Q psy12425        361 DEYVCRAVNKGGVKSTK--AELIIM  383 (591)
Q Consensus       361 g~y~c~a~n~~g~~~~~--~~l~v~  383 (591)
                      |.|+|.|.|..|....+  +.|.|.
T Consensus        80 G~Y~C~a~N~~G~~~~s~~v~l~V~  104 (110)
T d1f97a2          80 GEYYCQAQNGYGTAMRSEAAHMDAV  104 (110)
T ss_dssp             EEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             EEEEEEEEECCCcEEEEEEEEEEEE
Confidence            99999999999987554  455554

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=1.3e-11  Score=86.63  Aligned_cols=83  Identities=18%  Similarity=0.214  Sum_probs=68.6

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceE--EeceeeeeEEEEcCcccCceEEEEEEEEc
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI--RVGNTRFTTMAITGLSPGHQYEFRVYAEN  558 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n  558 (591)
                      .+++|.++.+..++.+++.|+|.+|.    +.+.+|.+.|+..+...|.  ...+...+.++|.+|.|++.|.|+|+|.|
T Consensus         3 v~~~P~~l~v~~v~~~si~v~W~~p~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~   78 (93)
T d1tdqa1           3 VIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVR   78 (93)
T ss_dssp             SSCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred             cCCcCCCCEEEEeCCCEEEEEEEccc----cCCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEe
Confidence            35789999999999999999999763    3678999999987764432  22455567999999999999999999999


Q ss_pred             CCcCCCCCC
Q psy12425        559 VYGRSDPST  567 (591)
Q Consensus       559 ~~G~~~~s~  567 (591)
                      ..|.|+++.
T Consensus        79 ~~g~s~~~~   87 (93)
T d1tdqa1          79 GTNESDASS   87 (93)
T ss_dssp             TTEECCCEE
T ss_pred             CCCCcCCEE
Confidence            999988764

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.6e-12  Score=93.92  Aligned_cols=81  Identities=21%  Similarity=0.357  Sum_probs=62.5

Q ss_pred             ccceeccccEEEEEEE-cCCCCCeeEEecCCccCCCCCceEEEE-------eCCeEEEEEcceecccceEEEEEEEeCCc
Q psy12425        301 NANAIQNHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFA-------EGDTYTLIINSVYGVDADEYVCRAVNKGG  372 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~c~a~n~~g  372 (591)
                      ...+..|+.+.|.|.+ .|.|.+.+.|++++..+....++....       ......|.|.++..+|.|.|+|.|.|..|
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence            4557889999999998 589999999999988876554433221       11233789999999999999999999999


Q ss_pred             ceeeeeEEE
Q psy12425        373 VKSTKAELI  381 (591)
Q Consensus       373 ~~~~~~~l~  381 (591)
                      ....+..+.
T Consensus        91 ~~~~s~~v~   99 (104)
T d1nbqa2          91 TPMTSNAVR   99 (104)
T ss_dssp             CCEECCCBC
T ss_pred             ceEEEEEEE
Confidence            886554433

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.22  E-value=1.5e-11  Score=84.79  Aligned_cols=77  Identities=13%  Similarity=0.215  Sum_probs=59.0

Q ss_pred             cccceeccccEEEEEEEc-CCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcce-eee
Q psy12425        300 RNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STK  377 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~-~~~  377 (591)
                      ....+.+|+.+.|.|.+. +.|.+.+.|++++..+.      ....+  ..|.|.++..+|+|.|+|.|.|..|.. +..
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~------~~~~~--~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~   81 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK------YFHHN--SDFHIPKATLKDSGSYFCRGLVGSKNVSSET   81 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE------EEEEC--CCEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccc------eeccc--cccEECccceeccceEEEEEEeCCCCeEEee
Confidence            345578999999999986 45667899999986643      11222  268999999999999999999998875 355


Q ss_pred             eEEEEec
Q psy12425        378 AELIIMT  384 (591)
Q Consensus       378 ~~l~v~~  384 (591)
                      +.|.|..
T Consensus        82 v~itV~E   88 (89)
T d1fnla2          82 VNITITQ   88 (89)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            6777654

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.3e-11  Score=84.25  Aligned_cols=90  Identities=29%  Similarity=0.458  Sum_probs=71.9

Q ss_pred             CCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEcc
Q psy12425         89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNE  168 (591)
Q Consensus        89 p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~  168 (591)
                      |.++..+.........++.|+|.+|..+++..+..|.|+++......|..... .....+++.+|.+++.|.|+|+|.|.
T Consensus         2 P~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~v~~L~p~t~Y~frV~A~N~   80 (97)
T d2crza1           2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ-GSEVECTVSSLLPGKTYSFRLRAANK   80 (97)
T ss_dssp             CCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEE-ESCSEEEEESCCTTCEEEECCEEECS
T ss_pred             cCcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeec-CCceEEEEcCCCCCEEEEEEEEEecC
Confidence            44444432223456689999999998888889999999999988888887654 46778999999999999999999999


Q ss_pred             CCCCCCCCccC
Q psy12425        169 NGMGPPLEGIN  179 (591)
Q Consensus       169 ~g~~~~~~~~~  179 (591)
                      .|.+..+....
T Consensus        81 ~G~s~~S~~~~   91 (97)
T d2crza1          81 MGFGPFSEKCD   91 (97)
T ss_dssp             SCBCCCCCCEE
T ss_pred             CeEcCCcCCCe
Confidence            99988876543

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.3e-11  Score=86.24  Aligned_cols=81  Identities=21%  Similarity=0.274  Sum_probs=65.8

Q ss_pred             CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceE--EeceeeeeEEEEcCcccCceEEEEEEEEcCCc
Q psy12425        484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI--RVGNTRFTTMAITGLSPGHQYEFRVYAENVYG  561 (591)
Q Consensus       484 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G  561 (591)
                      +|.++.+..++.+++.|+|++|.    ..+.+|.++++......+.  .......+.++|.+|.|++.|.|+|+|.|..|
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g   77 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTL   77 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCCEEEEEecCCEEEEEEEccc----eeccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCCC
Confidence            57889999999999999999863    3567888888776543332  23455667899999999999999999999999


Q ss_pred             CCCCCCC
Q psy12425        562 RSDPSTT  568 (591)
Q Consensus       562 ~~~~s~~  568 (591)
                      .|.++..
T Consensus        78 ~s~~~~~   84 (90)
T d1fnha1          78 TSRPAQG   84 (90)
T ss_dssp             ECCCEEE
T ss_pred             CcCCEeE
Confidence            9998754

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=9.5e-12  Score=87.29  Aligned_cols=83  Identities=22%  Similarity=0.295  Sum_probs=64.4

Q ss_pred             CCCCCCCCeeeeecCC-eeEEEeeccccCCCcceeeEEEEeeeCCCCce---EEeceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        481 RPDPPQFPTVEDIGHD-SLALVWRAPIWDGGSNITNYIVEKREHPMSSW---IRVGNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~-~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~---~~~~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      |+.||.++++...+.. .+.|+|++|.   +..+.+|+|.|+...+..+   ....+.....+.|.+|.|++.|.|+|.|
T Consensus         1 P~~PP~~l~v~~~~~ts~i~v~W~~p~---~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a   77 (94)
T d1fnfa1           1 PLSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT   77 (94)
T ss_dssp             CCCCCEEEEEEECSSSSCEEEEEECCS---CSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEE
T ss_pred             CCCcCcCcEEEEecCCCEEEEEeeCCC---CCCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEE
Confidence            4578999999887654 5899999863   3358999999987654332   2223445679999999999999999999


Q ss_pred             EcCCcCCCCC
Q psy12425        557 ENVYGRSDPS  566 (591)
Q Consensus       557 ~n~~G~~~~s  566 (591)
                      .|..|.|.+.
T Consensus        78 ~~~~g~s~p~   87 (94)
T d1fnfa1          78 VKDDKESVPI   87 (94)
T ss_dssp             EETTEECCCE
T ss_pred             EcCCCEeCCE
Confidence            9999987553

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.22  E-value=2.6e-12  Score=92.88  Aligned_cols=82  Identities=12%  Similarity=0.049  Sum_probs=62.6

Q ss_pred             eeeeecCCeEEEEEEe-ccCCCceEEEEECCEEeecCCc-----eeEEEeCCeEEEEEcccCCCCce---EEEEEEEcCC
Q psy12425          4 ALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDR-----FKFTVLDDYIIIFIKEIRKEDAG---DYTVNLSNSS   74 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g---~Y~c~~~n~~   74 (591)
                      +.++.+|+++.|.|.+ .|.|.|.+.|+|++..+....+     .++....+ .+|.|.+++.+|+|   .|.|.|.|..
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-~~L~i~~v~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD-GNLYFTIVTKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTT-SCEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccc-cccEEeeeEeeccCCceEEEEEEEeCC
Confidence            5578899999999997 8999999999998776543321     22333333 37999999998877   7999999999


Q ss_pred             eeeEEEEEEEEe
Q psy12425         75 GSVSGTFTINIT   86 (591)
Q Consensus        75 g~~~~~~~l~v~   86 (591)
                      |.....+.+.+.
T Consensus        90 g~~~~~~~~~~i  101 (111)
T d1biha2          90 VDEEVVLVEYEI  101 (111)
T ss_dssp             CSSCEEEEEEEE
T ss_pred             CCceEEEEEEEe
Confidence            988776655554

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.6e-11  Score=87.57  Aligned_cols=91  Identities=23%  Similarity=0.315  Sum_probs=72.5

Q ss_pred             CCCCCCCCeeeee--cCCeeEEEeecccc--CCCcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        481 RPDPPQFPTVEDI--GHDSLALVWRAPIW--DGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       481 ~p~~p~~~~~~~~--~~~~v~l~W~~p~~--~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      .|+||.++.+..+  +..++.|+|++|..  +.......|.++++......|..........+.|.+|.+++.|.|+|+|
T Consensus         7 kP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~rVrA   86 (109)
T d1uc6a_           7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAHTITDAYAGKEYIIQVAA   86 (109)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEESSCSEEEETTCCSSSCEEEEEEC
T ss_pred             ECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEeccCCceeEEeCCCCCCCEEEEEEEE
Confidence            5889999988754  56789999998754  2334567899999988888888777777789999999999999999999


Q ss_pred             EcCCcCCCCCCCcceE
Q psy12425        557 ENVYGRSDPSTTSDLI  572 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~~  572 (591)
                      .|. |.|.+|+.+..+
T Consensus        87 ~~~-~~g~wS~WS~~~  101 (109)
T d1uc6a_          87 KDN-EIGTWSDWSVAA  101 (109)
T ss_dssp             CBS-SSCCCCCCCEEE
T ss_pred             EEC-CCCCcCCCCCCE
Confidence            886 556666655443

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.1e-11  Score=88.30  Aligned_cols=100  Identities=24%  Similarity=0.487  Sum_probs=75.8

Q ss_pred             EEEEEecCCCCCCCCc-ceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe-ecCcceEEEcCCcCCcE
Q psy12425         81 FTINITGLPGPPIGPL-DVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST-TCHDTTFIVQGLTEGQE  158 (591)
Q Consensus        81 ~~l~v~~~p~~p~~~~-~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~  158 (591)
                      +.|.|.+.|.+|..|. .+......++.|+|.+|. +++.++..|.|+++..+...+..... ......+.+.+|.+++.
T Consensus         3 ~~l~v~~~P~~P~~p~~~~~~~~~~sv~l~W~~P~-~~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   81 (108)
T d1wf5a1           3 AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARS   81 (108)
T ss_dssp             CCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCCC-CCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCE
T ss_pred             cccEEecCCCCCCCCEEEEEeccCCEEEEEEECCC-CCCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCCE
Confidence            4567888899888763 233456789999999885 56778999999998876543333322 34566899999999999


Q ss_pred             EEEEEEEEccCCCCCCCCccCcc
Q psy12425        159 YLFHVMAVNENGMGPPLEGINPI  181 (591)
Q Consensus       159 y~~~~~a~n~~g~~~~~~~~~~~  181 (591)
                      |.|+|.|.|..|.+..+.....+
T Consensus        82 Y~frV~A~N~~G~s~~S~~~~~~  104 (108)
T d1wf5a1          82 YQFRLCAVNDVGKGQFSKDTERV  104 (108)
T ss_dssp             EEEEEEEEESSCEEEECCCCSCE
T ss_pred             EEEEEEEEcCCcCCCCcCCcCCE
Confidence            99999999999988776654433

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.8e-12  Score=90.82  Aligned_cols=83  Identities=7%  Similarity=0.021  Sum_probs=59.8

Q ss_pred             eeeeecCCeEEEEEEecc-C--CCceEEEEECCEEeecCCceeEEEeC--CeEEEEEcccCCCCceEEEEEEEcCCeeeE
Q psy12425          4 ALYIPEGDNTKVKIFYAG-D--QPMEVSLTKNGRVVQSDDRFKFTVLD--DYIIIFIKEIRKEDAGDYTVNLSNSSGSVS   78 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~-~--p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~~   78 (591)
                      +..+.+|+.++|+|.+.| .  |.++|.|+|||+.|............  ....|.|.....+|.|.|+|+|.|..|...
T Consensus        11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~   90 (106)
T d1zxqa1          11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRG   90 (106)
T ss_dssp             SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGT
T ss_pred             CCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCC
Confidence            456889999999999987 4  45589999999998654332222112  235677877778888899999999887655


Q ss_pred             EEEEEEEe
Q psy12425         79 GTFTINIT   86 (591)
Q Consensus        79 ~~~~l~v~   86 (591)
                      ..+.+.+.
T Consensus        91 ~~~~~~~s   98 (106)
T d1zxqa1          91 GNIFHKHS   98 (106)
T ss_dssp             CCEEEEEC
T ss_pred             CeeEeccc
Confidence            55555543

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.5e-12  Score=93.87  Aligned_cols=89  Identities=17%  Similarity=0.207  Sum_probs=69.7

Q ss_pred             CCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCC--------------ceEEe-----------ceeeee
Q psy12425        483 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS--------------SWIRV-----------GNTRFT  537 (591)
Q Consensus       483 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~--------------~~~~~-----------~~~~~~  537 (591)
                      .+|.++.+...+.++|.|+|++|..+++..+.+|.|+|+..+..              .|...           ......
T Consensus         3 s~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T d2dtge3           3 NELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP   82 (125)
T ss_dssp             CCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred             CCCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence            46788999999999999999998766667899999999765432              12111           234567


Q ss_pred             EEEEcCcccCceEEEEEEEEcCCcC-----CCCCCCcce
Q psy12425        538 TMAITGLSPGHQYEFRVYAENVYGR-----SDPSTTSDL  571 (591)
Q Consensus       538 ~~~i~~l~~~~~Y~~~v~A~n~~G~-----~~~s~~~~~  571 (591)
                      .+.|.+|.|++.|.|+|+|.|.+|.     |+.|..+.+
T Consensus        83 ~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~  121 (125)
T d2dtge3          83 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYV  121 (125)
T ss_dssp             EEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCC
T ss_pred             EEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEE
Confidence            8999999999999999999999995     666766543

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.2e-10  Score=83.92  Aligned_cols=91  Identities=16%  Similarity=0.031  Sum_probs=68.0

Q ss_pred             CCCCCCCCeeeeec-CCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe--ceeeeeEEEEcCcccCceEEEEEEEE
Q psy12425        481 RPDPPQFPTVEDIG-HDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMAITGLSPGHQYEFRVYAE  557 (591)
Q Consensus       481 ~p~~p~~~~~~~~~-~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~A~  557 (591)
                      +|+||.++.+.... ...+.|+|.+|..+.+..+..|.|+|+......+...  .....+.+.|.+|.+++.|.|+|+|.
T Consensus         4 k~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRar   83 (105)
T d1erna2           4 LLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRAR   83 (105)
T ss_dssp             CCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             ccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEEEE
Confidence            57899999887654 4569999998877777788899999998765544322  33445789999999999999999998


Q ss_pred             cCC--cCCCCCCCcce
Q psy12425        558 NVY--GRSDPSTTSDL  571 (591)
Q Consensus       558 n~~--G~~~~s~~~~~  571 (591)
                      +..  |.|.+|+.+..
T Consensus        84 ~~~~~~~G~WSeWS~~   99 (105)
T d1erna2          84 MAEPSFGGFWSAWSEP   99 (105)
T ss_dssp             ECSSSCCBCCCCCCCC
T ss_pred             ECCCCCCCCCCCCCCC
Confidence            653  44555555443

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.6e-11  Score=85.15  Aligned_cols=78  Identities=13%  Similarity=0.211  Sum_probs=61.3

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCC-ceEEEEeCCeEEEEEcceecccceEEEEEEEeCCcceeeee
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA-RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA  378 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~~~~  378 (591)
                      ....+.+|+++.|.|.+.+ |.|.+.|++++..+.... ++.+..++   +|.|.++.++|+|.|+|.|.|..|......
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~---~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK---NLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT---CEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee---EEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            3456889999999999998 668999999988876544 33433333   699999999999999999999888765544


Q ss_pred             EEE
Q psy12425        379 ELI  381 (591)
Q Consensus       379 ~l~  381 (591)
                      .+.
T Consensus        81 ~l~   83 (92)
T d1olza1          81 VVA   83 (92)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.9e-12  Score=95.59  Aligned_cols=99  Identities=26%  Similarity=0.384  Sum_probs=73.9

Q ss_pred             EEEecCCcccCCCCcccceeecCCCeEEEEEeeecc-CCCeEEEeeCCeEeeecc--ceEEEec----CCeeEEEEeccC
Q psy12425        380 LIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGY-PKPKITWYRDNEVIESGG--HFHVETS----ERHAILTIRDAS  452 (591)
Q Consensus       380 l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~~~~~~~~--~~~~~~~----~~~~~l~i~~~~  452 (591)
                      |.|..||.+..+    ....+..|+.+.|.|.+.+. |.+.+.|++++..+....  ++.+...    +....|.|.++.
T Consensus         2 L~V~~Pp~i~~~----~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~   77 (115)
T d2crya1           2 LTVNGPPIISST----QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIV   77 (115)
T ss_dssp             CCCCSSCCEEEE----CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCC
T ss_pred             eEEecCCEEecC----CCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccc
Confidence            455666665432    23456789999999999985 556899999998886443  3333221    123579999999


Q ss_pred             CCc-ceeEEEEEEcCCCccceEEEEEecCCC
Q psy12425        453 NVD-TAPYRVVAENDLGMDSAIVKIQISDRP  482 (591)
Q Consensus       453 ~~~-~g~y~c~a~n~~g~~~~~~~~~v~~~p  482 (591)
                      ..| +|.|+|.|.|..|..+..+.|.|...+
T Consensus        78 ~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          78 RADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             HHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             hhcCCeEEEEEEEECCCeEEEEEEEEEECCC
Confidence            998 699999999999999999999887543

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=5.1e-11  Score=85.36  Aligned_cols=89  Identities=17%  Similarity=0.335  Sum_probs=65.0

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCC----------CCceEEEEeCCeEEEEEcceecccceE
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP----------SARHHIFAEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~g~  362 (591)
                      |.+..+...+.+.+|+.+.|.|.+.|.|.|.+.|++++.....          .........+  .+|.|.++..+|+|.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~tL~I~~v~~~D~G~   79 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS--SGITFSSVTRKDNGE   79 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET--TEEEESCCCGGGCEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecC--CEEEEeECCccCCEE
Confidence            4455555677789999999999999999999999985443211          0000111111  169999999999999


Q ss_pred             EEEEEEeCCcceeeeeEEEEe
Q psy12425        363 YVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       363 y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      |+|.|.|..|.......+.+.
T Consensus        80 Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          80 YTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999999999988766665553

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.17  E-value=5e-11  Score=81.51  Aligned_cols=80  Identities=18%  Similarity=0.309  Sum_probs=62.7

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCC-eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.....          .|.|.++..+|+|.|+|.|.|
T Consensus         3 pkp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~~----------~l~i~~v~~~dsG~Y~C~a~n   72 (85)
T d2fcba1           3 PKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQ   72 (85)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEECTT
T ss_pred             CCCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccccc----------ceEEeeccccCCcEEEEECCC
Confidence            46777777778889999999999999998766 5889999887754322          588999999999999999987


Q ss_pred             CCcceeeeeEEEE
Q psy12425        370 KGGVKSTKAELII  382 (591)
Q Consensus       370 ~~g~~~~~~~l~v  382 (591)
                      ..+  +..+.|.|
T Consensus        73 s~~--S~~v~l~V   83 (85)
T d2fcba1          73 TSL--SDPVHLTV   83 (85)
T ss_dssp             SBC--CCCEEEEE
T ss_pred             Ccc--cccEEEEE
Confidence            643  33444544

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-11  Score=88.19  Aligned_cols=94  Identities=12%  Similarity=0.170  Sum_probs=70.9

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcC-CCCC--eeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEE
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITG-CPKP--TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      .|+.+...+.+..+.+|+.++|+|.+.| .|.+  .+.|++++..+.....   .......+|.|.....+|.|.|+|+|
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A   79 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRT   79 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEEE
Confidence            4667777777777889999999999987 5655  5789999877643211   11122447999999999999999999


Q ss_pred             EeCCcceeeeeEEEEecCCc
Q psy12425        368 VNKGGVKSTKAELIIMTAPK  387 (591)
Q Consensus       368 ~n~~g~~~~~~~l~v~~~p~  387 (591)
                      .|..|.......+.+..++.
T Consensus        80 ~n~~g~~~~~~~~~~s~p~~   99 (103)
T d1iama1          80 ELDLRPQGLELFENTSAPYQ   99 (103)
T ss_dssp             EEECGGGTSCEEEEECCCEE
T ss_pred             EeCCCCccCeEeeeEcCCCE
Confidence            99999888777777765543

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.2e-11  Score=89.57  Aligned_cols=87  Identities=16%  Similarity=0.305  Sum_probs=64.9

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCce-----------EEEEeCCeEEEEEcceecccce
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARH-----------HIFAEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~-----------~~~~~~~~~~l~i~~~~~~d~g  361 (591)
                      +.+......+.+.+|+++.|.|.+.|.|.|.+.|++++..+......           ....+   .+|.|.++..+|+|
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~I~~v~~~D~G   81 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP---TGITFKSVTREDTG   81 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET---TEEECSCCCTTSCS
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecC---ceEEEeccccccee
Confidence            34444445677899999999999999999999999876543211110           11111   27999999999999


Q ss_pred             EEEEEEEeCCcceeeeeEEEE
Q psy12425        362 EYVCRAVNKGGVKSTKAELII  382 (591)
Q Consensus       362 ~y~c~a~n~~g~~~~~~~l~v  382 (591)
                      .|+|.|.|..|.....+.+.+
T Consensus        82 ~Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          82 TYTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEEEEEEETTSSCEECCEEEC
T ss_pred             eEEEEEEECCCCEEEEEEEEE
Confidence            999999999998877666654

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.7e-11  Score=83.55  Aligned_cols=71  Identities=17%  Similarity=0.232  Sum_probs=59.1

Q ss_pred             cceeccccEEEEE------EEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCCccee
Q psy12425        302 ANAIQNHNAQFQC------TITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS  375 (591)
Q Consensus       302 ~~~~~g~~~~l~c------~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~g~~~  375 (591)
                      ..+..|....|.|      .+.+.|.|.+.|++++..+..........++   .|.|.++..+|+|.|+|.|.|..|...
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCC---EEEEcccccccCcEEEEEEEECcCCEE
Confidence            3467899999999      6789999999999999998776555444444   699999999999999999999877543

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.2e-11  Score=85.80  Aligned_cols=84  Identities=33%  Similarity=0.630  Sum_probs=74.1

Q ss_pred             CCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEc
Q psy12425        189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN  268 (591)
Q Consensus       189 ~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n  268 (591)
                      +|.+|..+.+.....++++|+|.+|..+++..+..|.+++.......|............+.+.+|.+++.|.|+++|.|
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n   81 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKN   81 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEEC
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEEE
Confidence            67788888999999999999999988888888999999999988888877765555678899999999999999999999


Q ss_pred             CCCC
Q psy12425        269 EAGL  272 (591)
Q Consensus       269 ~~g~  272 (591)
                      ..|.
T Consensus        82 ~~G~   85 (104)
T d1bpva_          82 AAGA   85 (104)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            9986

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.5e-11  Score=84.16  Aligned_cols=84  Identities=17%  Similarity=0.217  Sum_probs=67.2

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCce----------EEeceeeeeEEEEcCcccCce
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW----------IRVGNTRFTTMAITGLSPGHQ  549 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~----------~~~~~~~~~~~~i~~l~~~~~  549 (591)
                      +.|.+|.++.+..++.+++.|+|++|.    +.+.+|+|.++......+          ..........++|.+|.|++.
T Consensus         2 g~Pp~~~~l~v~~~t~~sv~v~W~pp~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~   77 (101)
T d2cuia1           2 GSRPRLSQLSVTDVTTSSLRLNWEAPP----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTL   77 (101)
T ss_dssp             CCCCCCCCCEEESCCSSCEEEECCCCT----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCE
T ss_pred             CCccCCCCcEEEEECCCEEEEEEEecc----ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCE
Confidence            467788999999999999999999763    357899999886543222          112334567899999999999


Q ss_pred             EEEEEEEEcCCcCCCCCC
Q psy12425        550 YEFRVYAENVYGRSDPST  567 (591)
Q Consensus       550 Y~~~v~A~n~~G~~~~s~  567 (591)
                      |.|+|+|.|..|.|+++.
T Consensus        78 Y~~~V~a~~~~g~g~~~~   95 (101)
T d2cuia1          78 YSLTLYGLRGPHKADSIQ   95 (101)
T ss_dssp             EEEEEEEECSSSEEEEEE
T ss_pred             EEEEEEEEeCCcEeCCeE
Confidence            999999999999988754

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.6e-10  Score=83.42  Aligned_cols=90  Identities=16%  Similarity=0.143  Sum_probs=67.5

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCCC-cceeeEEEEeeeCCCC-ceE--EeceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGG-SNITNYIVEKREHPMS-SWI--RVGNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~-~~~~~y~v~~~~~~~~-~~~--~~~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      .+.||.++.+..++..++.|+|.+|...++ .....|.+.++..... .+.  .........+.|.+|.|++.|.|+|+|
T Consensus         2 rl~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra   81 (104)
T d2b5ib2           2 RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRV   81 (104)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEEE
T ss_pred             ccCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEEE
Confidence            468999999999999999999998764332 4557888888765432 111  123345678999999999999999999


Q ss_pred             EcCCcC-CCCCCCcc
Q psy12425        557 ENVYGR-SDPSTTSD  570 (591)
Q Consensus       557 ~n~~G~-~~~s~~~~  570 (591)
                      .|..|. |.+|+.+.
T Consensus        82 ~~~~g~~g~wS~wS~   96 (104)
T d2b5ib2          82 KPLQGEFTTWSPWSQ   96 (104)
T ss_dssp             EESCCSSCCCCCCCC
T ss_pred             EECCCCCCCCCCCcC
Confidence            999995 55555544

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.2e-11  Score=86.17  Aligned_cols=83  Identities=18%  Similarity=0.179  Sum_probs=66.2

Q ss_pred             ceeecCCCeEEEEEeee-ccCCCeEEEeeCCeEeeec--cceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCccceE
Q psy12425        397 TAYFDKGENVVVKIPFT-GYPKPKITWYRDNEVIESG--GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAI  473 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~-~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~~~~  473 (591)
                      .....+|+.+.|.|.+. +.|.+.|.|+++|..+...  ....+..  ....|.|.++...|+|.|+|.|.|..|....+
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ--HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE--ETTEEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec--cCCEEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            34567899999999885 7899999999998655422  2222322  24579999999999999999999999999999


Q ss_pred             EEEEecCC
Q psy12425        474 VKIQISDR  481 (591)
Q Consensus       474 ~~~~v~~~  481 (591)
                      +.|.|...
T Consensus        89 ~~L~V~~~   96 (101)
T d1iray1          89 ISAKFVEN   96 (101)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            99988753

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.1e-10  Score=81.31  Aligned_cols=89  Identities=20%  Similarity=0.293  Sum_probs=75.0

Q ss_pred             CCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEcc
Q psy12425         89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNE  168 (591)
Q Consensus        89 p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~  168 (591)
                      |.+|.. +.+......++.|+|.+|...++..+..|.+.++......|...........+.+.+|.+++.|.|+|+|.|.
T Consensus         1 P~~P~~-~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~n~   79 (96)
T d1x5xa1           1 PSMPAS-PVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNS   79 (96)
T ss_dssp             CCCCCC-CEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEECS
T ss_pred             CccCCC-CEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEeecCCCCEEEECCCCCCCEEEEEEEEEcC
Confidence            456665 4677889999999999998888888999999988877777777666777889999999999999999999999


Q ss_pred             CCCCCCCCcc
Q psy12425        169 NGMGPPLEGI  178 (591)
Q Consensus       169 ~g~~~~~~~~  178 (591)
                      .|.+..+...
T Consensus        80 ~G~s~~S~~~   89 (96)
T d1x5xa1          80 EGKSNPSEVV   89 (96)
T ss_dssp             SCEEEECCCE
T ss_pred             CcEeCCCCCE
Confidence            9987776543

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=4.5e-11  Score=86.58  Aligned_cols=85  Identities=16%  Similarity=0.183  Sum_probs=62.2

Q ss_pred             CCCCCCCCCe-eeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCc----eE--Ee---ceeeeeEEEEcCcccCce
Q psy12425        480 DRPDPPQFPT-VEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS----WI--RV---GNTRFTTMAITGLSPGHQ  549 (591)
Q Consensus       480 ~~p~~p~~~~-~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~----~~--~~---~~~~~~~~~i~~l~~~~~  549 (591)
                      .||++|.++. +...+.++++++|+++. +++.+ +.|.+.+.......    +.  ..   .......+.+.+|.+++.
T Consensus         3 ~PP~~P~~v~~i~~~~~~sv~~sW~p~~-d~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~   80 (107)
T d1cd9b1           3 YPPASPSNLSCLMHLTTNSLVCQWEPGP-ETHLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQY   80 (107)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCS-CCSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSC
T ss_pred             CccCCCcCCEEEEecCCCEEEEEEcCCC-CCCCC-cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCce
Confidence            4789999998 45677899999999764 66655 55666554433211    11  11   234567899999999999


Q ss_pred             EEEEEEEEcCCcCCCCC
Q psy12425        550 YEFRVYAENVYGRSDPS  566 (591)
Q Consensus       550 Y~~~v~A~n~~G~~~~s  566 (591)
                      |.|+|.|.|.+|.+.++
T Consensus        81 Y~frV~A~N~~G~s~S~   97 (107)
T d1cd9b1          81 MAIWVQAENMLGSSESP   97 (107)
T ss_dssp             EEEEEEEEETTEEEECC
T ss_pred             EEEEEEEEeCCccccCC
Confidence            99999999999998644

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.5e-10  Score=85.15  Aligned_cols=97  Identities=32%  Similarity=0.647  Sum_probs=78.1

Q ss_pred             EEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCC-CceEEEEeecCcceEEEcCCcCCcEEE
Q psy12425         82 TINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM-PHWICISTTCHDTTFIVQGLTEGQEYL  160 (591)
Q Consensus        82 ~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~  160 (591)
                      .+.+.+.|.+|.. +.+......++.|+|.++. +++.++..|.+++..... ..|..+........+++.+|.+++.|.
T Consensus         9 ~~~~~~~P~pP~~-~~v~~~~~~sv~l~W~p~~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~   86 (117)
T d1uema_           9 NYDLSDLPGPPSK-PQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYL   86 (117)
T ss_dssp             CCCSCCSCBCCCC-CEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEE
T ss_pred             cceeCccCcCCCC-CEEEEccCCEEEEEEECCC-cCCCCeEEEEEEEeccCCceeeEEeccccccccceECCCCCCCEEE
Confidence            3456678888877 5777888999999999765 667789999998876554 457776666678899999999999999


Q ss_pred             EEEEEEccCCCCCCCCccCc
Q psy12425        161 FHVMAVNENGMGPPLEGINP  180 (591)
Q Consensus       161 ~~~~a~n~~g~~~~~~~~~~  180 (591)
                      |+|+|.|..|.+.++.....
T Consensus        87 frV~A~N~~G~s~~S~~s~~  106 (117)
T d1uema_          87 FMVRAINPQGLSDPSPMSDP  106 (117)
T ss_dssp             EEEEEEETTEEEEECCCCCC
T ss_pred             EEEEEEeCCcCCCCcCCCcC
Confidence            99999999999877765443

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=9.1e-11  Score=86.18  Aligned_cols=83  Identities=19%  Similarity=0.187  Sum_probs=61.8

Q ss_pred             CCCCCCCCCeeeeecCCeeEEEeeccccCCC-----cceeeEEEEeeeCCCCceE--E-eceeeeeEEEEcCcccCceEE
Q psy12425        480 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGG-----SNITNYIVEKREHPMSSWI--R-VGNTRFTTMAITGLSPGHQYE  551 (591)
Q Consensus       480 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~-----~~~~~y~v~~~~~~~~~~~--~-~~~~~~~~~~i~~l~~~~~Y~  551 (591)
                      -+|.+|.++.+. .+.+++.|+|++|...++     ..+..|.+.++......|.  . ........+.+.+|.+++.|.
T Consensus         4 vkP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~   82 (114)
T d2gysa2           4 VQPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYV   82 (114)
T ss_dssp             BCCCCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEE
T ss_pred             ccCCcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEEE
Confidence            368999999986 567899999998754432     3456899999877654332  2 234455688889999999999


Q ss_pred             EEEEEEcCCcCC
Q psy12425        552 FRVYAENVYGRS  563 (591)
Q Consensus       552 ~~v~A~n~~G~~  563 (591)
                      |+|+|.|..|.+
T Consensus        83 ~rVRa~~~~g~~   94 (114)
T d2gysa2          83 ARVRTRLAPGSR   94 (114)
T ss_dssp             EEEEEEECTTSS
T ss_pred             EEEEEEeCCCCC
Confidence            999999999863

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3e-10  Score=80.91  Aligned_cols=89  Identities=21%  Similarity=0.364  Sum_probs=71.9

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEee----cCcceEEEcCCcCCcEEEEEE
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT----CHDTTFIVQGLTEGQEYLFHV  163 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~~~y~~~~  163 (591)
                      .|.+|..  ........++.|.|.+|..++|.+|..|.++++..+...|......    .....+.+.+|.+++.|.|++
T Consensus         2 vP~~P~~--~~~~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV   79 (101)
T d2haza1           2 TPSSPSI--DQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL   79 (101)
T ss_dssp             CCCCCEE--EEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEE
T ss_pred             cCcCCcc--CEEEeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEE
Confidence            4666643  3345677899999999988888899999999999888777765442    335679999999999999999


Q ss_pred             EEEccCCCCCCCCcc
Q psy12425        164 MAVNENGMGPPLEGI  178 (591)
Q Consensus       164 ~a~n~~g~~~~~~~~  178 (591)
                      +|.|..|.+..+...
T Consensus        80 ~A~N~~G~g~~S~~~   94 (101)
T d2haza1          80 AALNGKGLGEISAAS   94 (101)
T ss_dssp             EEEETTEECCCCCCE
T ss_pred             EEEeCCcCcCCCCce
Confidence            999999998887654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.10  E-value=1.6e-10  Score=78.67  Aligned_cols=71  Identities=13%  Similarity=0.301  Sum_probs=57.1

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCe-eEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ++|.+...+....+.+|+.++|+|.+.+.|.+. +.|++++..+...          ..+|.|.++..+|+|.|+|.|.|
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~Y~C~a~~   73 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNL   73 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSS
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------ceeeEecCCcccCCEEEEEEccC
Confidence            467787888888899999999999999988875 5567776654322          22699999999999999999976


Q ss_pred             CC
Q psy12425        370 KG  371 (591)
Q Consensus       370 ~~  371 (591)
                      ..
T Consensus        74 s~   75 (84)
T d1fnla1          74 ST   75 (84)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.09  E-value=3e-10  Score=80.92  Aligned_cols=93  Identities=18%  Similarity=0.343  Sum_probs=71.1

Q ss_pred             EecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceE-EEEe-ecCcceEEEcCCcCCcEEEEE
Q psy12425         85 ITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI-CIST-TCHDTTFIVQGLTEGQEYLFH  162 (591)
Q Consensus        85 v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~-~~~~-~~~~~~~~i~~l~~~~~y~~~  162 (591)
                      |.+.|.+|.. +.+. ...+++.|+|.+|. +++.++..|.++++......|. .... ......+.+.+|.+++.|.|+
T Consensus         2 V~dvP~~P~~-~~v~-~~~~sv~lsW~pp~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~fr   78 (100)
T d1cfba1           2 VQDVPNAPKL-TGIT-CQADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFR   78 (100)
T ss_dssp             CCCCCCCCEE-EEEE-ECSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEE
T ss_pred             cccCCCcCcC-cEEE-EcCCEEEEEEcCCc-ccccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEE
Confidence            5677888876 4554 45678999999876 5567899999999877655443 3232 345678899999999999999


Q ss_pred             EEEEccCCCCCCCCccCc
Q psy12425        163 VMAVNENGMGPPLEGINP  180 (591)
Q Consensus       163 ~~a~n~~g~~~~~~~~~~  180 (591)
                      ++|.|..|.+.++..+..
T Consensus        79 V~A~n~~G~g~~S~~s~~   96 (100)
T d1cfba1          79 VIAFNKIGASPPSAHSDS   96 (100)
T ss_dssp             EEEEETTEECCCCCCCCC
T ss_pred             EEEEeCCcCCCCcCCCcC
Confidence            999999999888765443

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2e-10  Score=80.42  Aligned_cols=86  Identities=21%  Similarity=0.249  Sum_probs=70.6

Q ss_pred             CCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEcc
Q psy12425         89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNE  168 (591)
Q Consensus        89 p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~  168 (591)
                      |.+|.. +.+......++.|.|.+|. +++.+|..|.|+++......+...........+.+.+|.+++.|.|+|.|.|.
T Consensus         1 P~~P~~-~~~~~~~~~sv~l~W~~p~-~~~~~I~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~   78 (93)
T d2vkwa2           1 PSAPKL-EGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQ   78 (93)
T ss_dssp             CCCCEE-EEEECTTSSCEEEEEECCC-CTTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCcc-CEeEEcCCCEEEEEeeCCC-CCcCceEEEEEEeeecCcceeeeeeccCCceEEEEeccccceEEEEEEEEEcC
Confidence            455655 4666778899999999886 67789999999999887655555555667789999999999999999999999


Q ss_pred             CCCCCCCC
Q psy12425        169 NGMGPPLE  176 (591)
Q Consensus       169 ~g~~~~~~  176 (591)
                      .|.+.++.
T Consensus        79 ~G~s~ps~   86 (93)
T d2vkwa2          79 QGKSKAAH   86 (93)
T ss_dssp             TEECCCEE
T ss_pred             CCCcCCEe
Confidence            99887753

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=5.9e-10  Score=83.55  Aligned_cols=87  Identities=15%  Similarity=0.189  Sum_probs=63.4

Q ss_pred             ceeeeecCCeEEEEEEeccC---CCceEEEEECCEE-----------eec----C--CceeEEE---eCCeEEEEEcccC
Q psy12425          3 NALYIPEGDNTKVKIFYAGD---QPMEVSLTKNGRV-----------VQS----D--DRFKFTV---LDDYIIIFIKEIR   59 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~---p~~~v~W~~~~~~-----------~~~----~--~~~~~~~---~~~~~~l~i~~~~   59 (591)
                      +++.+.+|++|+|.|.+...   ....+.|++.+..           ...    .  .|..+..   ..+..+|.|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            35899999999999998642   3456899986531           000    1  1222221   1235799999999


Q ss_pred             CCCceEEEEEEEcCCeeeEEEEEEEEecCC
Q psy12425         60 KEDAGDYTVNLSNSSGSVSGTFTINITGLP   89 (591)
Q Consensus        60 ~~d~g~Y~c~~~n~~g~~~~~~~l~v~~~p   89 (591)
                      .+|+|.|.|.+.+..+..+..+.|.|.+++
T Consensus        90 ~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          90 FSDEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             hhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            999999999999999988888999998743

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.08  E-value=5.8e-11  Score=85.64  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=61.3

Q ss_pred             ceeecCCCeEEEEEee-eccCCCeEEEeeCCeEeeeccceEE----EecCCeeEEEEeccCCCcce---eEEEEEEcCCC
Q psy12425        397 TAYFDKGENVVVKIPF-TGYPKPKITWYRDNEVIESGGHFHV----ETSERHAILTIRDASNVDTA---PYRVVAENDLG  468 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~-~~~p~~~v~W~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g---~y~c~a~n~~g  468 (591)
                      ...+.+|+.+.|.|.+ .|.|.|.+.|++++..+........    ........|.|.+++..|+|   .|.|.|.|.+|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence            3346789999999997 8999999999998766543321111    11123567999999998876   79999999999


Q ss_pred             ccceEEEEEec
Q psy12425        469 MDSAIVKIQIS  479 (591)
Q Consensus       469 ~~~~~~~~~v~  479 (591)
                      .....+.+.+.
T Consensus        91 ~~~~~~~~~~i  101 (111)
T d1biha2          91 DEEVVLVEYEI  101 (111)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CceEEEEEEEe
Confidence            88766644443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.3e-10  Score=78.63  Aligned_cols=78  Identities=15%  Similarity=0.227  Sum_probs=56.7

Q ss_pred             CeEEeeccccceeccccEEEEEEEcCCCCCe-eEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeCC
Q psy12425        293 PEIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG  371 (591)
Q Consensus       293 p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~~  371 (591)
                      |.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+....          ..|.|.+++.+|+|.|+|.|.|..
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------SEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc----------ceeEECCCChhhCCcEEEEecCCC
Confidence            5666666777899999999999999998875 56677877665322          269999999999999999997754


Q ss_pred             cceeeeeEEEE
Q psy12425        372 GVKSTKAELII  382 (591)
Q Consensus       372 g~~~~~~~l~v  382 (591)
                      +  +..+.|.|
T Consensus        72 ~--S~~v~l~V   80 (82)
T d1f2qa1          72 E--SEPVYLEV   80 (82)
T ss_dssp             C--CCCEEEEE
T ss_pred             C--cccEEEEE
Confidence            3  33445554

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=1.7e-09  Score=77.78  Aligned_cols=95  Identities=27%  Similarity=0.458  Sum_probs=74.7

Q ss_pred             CCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCC-CccEEEEeee-cCCceeeecCcccCCcEEEEEE
Q psy12425        188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGS-DAWQRVNVAI-CAPSQINIPNLIEGRQYEFRVY  265 (591)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~-~~~~~~~i~~l~~~~~~~y~c~  265 (591)
                      .+|.+|..+.+.....+++.|+|.++ .+++..+.+|.|+++.... ..|....... .....+.+.+|.++..|.|++.
T Consensus         9 ~pP~~P~~~~v~~~~~~sv~l~W~p~-~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~   87 (108)
T d1x4za1           9 SPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVR   87 (108)
T ss_dssp             CCCCCCCCCEEEECCSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEE
T ss_pred             CCCccCCCCEEEEccCCEEEEEEECC-CCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEEE
Confidence            46888888999999999999999755 4556789999999987654 4565554433 3456899999999999999999


Q ss_pred             EEcCCCCCCCCCCcceEE
Q psy12425        266 AQNEAGLSLPSSASNSVQ  283 (591)
Q Consensus       266 a~n~~g~~~~s~~~~~~~  283 (591)
                      |.|..|.+..+..+..+.
T Consensus        88 A~N~~G~s~~S~pS~p~~  105 (108)
T d1x4za1          88 ALNMLGESEPSAPSRPYV  105 (108)
T ss_dssp             EEETTEECCCCCCCCCEE
T ss_pred             EECCCcCCCCCCCCCCEE
Confidence            999999888776554443

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.9e-10  Score=81.93  Aligned_cols=89  Identities=19%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCce--EEeceeeeeEEEEcCcccCceEEEEEEEEc
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW--IRVGNTRFTTMAITGLSPGHQYEFRVYAEN  558 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n  558 (591)
                      ++.|| ++.+.. +.+++.|+|.+|...++..+..|+|+|+......+  ..........+.|.+|.|++.|.|+|+|.+
T Consensus         5 k~~Pp-~l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa~~   82 (100)
T d2gysa4           5 QMAPP-SLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRT   82 (100)
T ss_dssp             CCCCC-EEEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEEEE
T ss_pred             cCCCC-ccEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEEEE
Confidence            44556 577765 55789999998876666667899999986554321  122334567999999999999999999999


Q ss_pred             CCcC--CCCCCCcce
Q psy12425        559 VYGR--SDPSTTSDL  571 (591)
Q Consensus       559 ~~G~--~~~s~~~~~  571 (591)
                      ..|.  |.+|+.+..
T Consensus        83 ~~g~~~g~WSeWS~~   97 (100)
T d2gysa4          83 SRTGYNGIWSEWSEA   97 (100)
T ss_dssp             CCTTCCBCCCCCCCC
T ss_pred             CCCCCCCCccCCCCC
Confidence            8874  677776654

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.3e-09  Score=76.62  Aligned_cols=87  Identities=25%  Similarity=0.402  Sum_probs=73.2

Q ss_pred             CCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEE
Q psy12425        187 YDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYA  266 (591)
Q Consensus       187 ~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a  266 (591)
                      ..+|.+|..+.+...+.+++.|+|.+|...+ ..+.+|.|.++..+...|.....   ...++.|.+|.++..|.|++.|
T Consensus         8 ~~vP~~P~~l~v~~~s~~si~l~W~~P~~~~-g~i~~Y~v~~~~~~~~~~~~~~~---~~~~~~i~~L~p~t~Y~~~V~A   83 (103)
T d1x5ga1           8 VQLPGPAPNLRAYAASPTSITVTWETPVSGN-GEIQNYKLYYMEKGTDKEQDVDV---SSHSYTINGLKKYTEYSFRVVA   83 (103)
T ss_dssp             SSCCCCCSSCEEEEEETTEEEEECCCCSCCS-SCCSEEEEEEEETTCCCCCCEEE---CSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCcccCCCcEEEEccCCEEEEEEECCcCCC-ccEEEEEEEEEeCCCceeEEEec---cccEEecCCCCCCCEEEEEEEE
Confidence            3578889999999999999999999886554 47899999999888777766543   4578999999999999999999


Q ss_pred             EcCCCCCCCCC
Q psy12425        267 QNEAGLSLPSS  277 (591)
Q Consensus       267 ~n~~g~~~~s~  277 (591)
                      .|..|.+..+.
T Consensus        84 ~n~~G~g~~S~   94 (103)
T d1x5ga1          84 YNKHGPGVSTP   94 (103)
T ss_dssp             ECSSCCCCBCC
T ss_pred             EcCCcCcCCCC
Confidence            99999876553

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=7.4e-11  Score=84.49  Aligned_cols=89  Identities=11%  Similarity=0.054  Sum_probs=61.6

Q ss_pred             EeeccccceeccccEEEEEEEcC-C--CCCeeEEecCCccCCCCCceEEEEeC--CeEEEEEcceecccceEEEEEEEeC
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITG-C--PKPTISWLKGSREITPSARHHIFAEG--DTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~-~--p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      ...+....+.+|+.++|.|.+.| .  |.+.+.|++++..+............  ....|.+.....+|.|.|+|+|.|.
T Consensus         6 ~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~   85 (106)
T d1zxqa1           6 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD   85 (106)
T ss_dssp             EEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             EecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEec
Confidence            34445567889999999999987 4  44589999998876533222211111  2335777777788888999999999


Q ss_pred             CcceeeeeEEEEec
Q psy12425        371 GGVKSTKAELIIMT  384 (591)
Q Consensus       371 ~g~~~~~~~l~v~~  384 (591)
                      .|.......+.+..
T Consensus        86 ~~~~~~~~~~~~s~   99 (106)
T d1zxqa1          86 LMSRGGNIFHKHSA   99 (106)
T ss_dssp             CGGGTCCEEEEECC
T ss_pred             CCCCCCeeEecccC
Confidence            88776665555543

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.9e-10  Score=78.04  Aligned_cols=88  Identities=16%  Similarity=0.132  Sum_probs=61.7

Q ss_pred             CCCCCCCCeeeeec-CCeeEEEeeccccCC---CcceeeEEEEeeeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEE
Q psy12425        481 RPDPPQFPTVEDIG-HDSLALVWRAPIWDG---GSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYA  556 (591)
Q Consensus       481 ~p~~p~~~~~~~~~-~~~v~l~W~~p~~~~---~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A  556 (591)
                      +|+||.++.+.... .+.+.|+|++|..-.   +.....|.|.|+......|........+.   .+|.+++.|.|+|+|
T Consensus         1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~~~t~---~~L~p~~~Y~v~VRa   77 (94)
T d3d85d3           1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTS---ATVICRKNASISVRA   77 (94)
T ss_dssp             CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEESSSE---EEECCCSSCEEEEEE
T ss_pred             CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEeccccceE---EEecCCCCEEEEEEE
Confidence            48999999987653 467999999885422   23478999999987777776554433333   458899999999999


Q ss_pred             EcCCcCCCCCCCcce
Q psy12425        557 ENVYGRSDPSTTSDL  571 (591)
Q Consensus       557 ~n~~G~~~~s~~~~~  571 (591)
                      .+..|.|.+|+.+.+
T Consensus        78 ~~~~~~g~WSeWS~~   92 (94)
T d3d85d3          78 QDRYYSSSWSEWASV   92 (94)
T ss_dssp             EESSSCCCCCCCEEE
T ss_pred             ecCCCCCCCccCcCC
Confidence            999999999988643

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=9.6e-10  Score=78.96  Aligned_cols=90  Identities=23%  Similarity=0.341  Sum_probs=72.8

Q ss_pred             cCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEE
Q psy12425         87 GLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAV  166 (591)
Q Consensus        87 ~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~  166 (591)
                      .+|++|.. +.+......++.|+|.+|. +++.++..|.++++......+...........+.+.+|.+++.|.|+|+|.
T Consensus         9 ~~P~~P~~-~~~~~~~~~sv~l~W~pp~-~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A~   86 (105)
T d1x3da1           9 CEPDIPNP-PRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSAR   86 (105)
T ss_dssp             SCCCCCCC-CEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEECCEE
T ss_pred             CCCcCCCC-CEEEEccCCEEEEEEECCC-CCcCccEEEEEEEecCCCcceeEEEecCCccEEEecCCcCCcEEEEEEEEE
Confidence            35655655 5777889999999999886 556789999999987766655555556678899999999999999999999


Q ss_pred             ccCCCCCCCCcc
Q psy12425        167 NENGMGPPLEGI  178 (591)
Q Consensus       167 n~~g~~~~~~~~  178 (591)
                      |..|.+..+...
T Consensus        87 N~~G~s~~S~~~   98 (105)
T d1x3da1          87 NDYGTSGFSEEV   98 (105)
T ss_dssp             ESSCBCCCCCCE
T ss_pred             CCCeEcCCCCcE
Confidence            999998877543

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.2e-10  Score=81.27  Aligned_cols=87  Identities=16%  Similarity=0.157  Sum_probs=61.2

Q ss_pred             CCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEe-c--eeeeeEEEEcCcccCceEEEEEEEEcCC
Q psy12425        484 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-G--NTRFTTMAITGLSPGHQYEFRVYAENVY  560 (591)
Q Consensus       484 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-~--~~~~~~~~i~~l~~~~~Y~~~v~A~n~~  560 (591)
                      +|.++++...+. ...|+|++|..+++ .+..|.+.........|... .  ......+++.+|.++..|.|||+|.|..
T Consensus         3 ~P~nv~v~s~n~-~~~L~W~pP~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~n~~   80 (98)
T d1fyhb1           3 TPTNVTIESYNM-NPIVYWEYQIMPQV-PVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVGQ   80 (98)
T ss_dssp             CCEEEEEECBSS-CCEEEEECCCCSSC-CEEEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEEETT
T ss_pred             cCCceEEEEeCC-cEEEEECCCCCCCC-CceeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEEcCC
Confidence            688899887654 45699999876665 44445444443333344332 2  2344567778999999999999999999


Q ss_pred             cCCCCCCCcceE
Q psy12425        561 GRSDPSTTSDLI  572 (591)
Q Consensus       561 G~~~~s~~~~~~  572 (591)
                      |.|+++....++
T Consensus        81 g~S~ws~s~~f~   92 (98)
T d1fyhb1          81 KESAYAKSEEFA   92 (98)
T ss_dssp             EECCCEECCCBC
T ss_pred             cccCCccCCCcE
Confidence            999988765543

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.7e-09  Score=73.84  Aligned_cols=85  Identities=24%  Similarity=0.366  Sum_probs=68.8

Q ss_pred             CCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEcc
Q psy12425         89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNE  168 (591)
Q Consensus        89 p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~  168 (591)
                      |++|.. +.+......++.|+|.+|.. ++..+..|.+++.......|...  ......+.+.+|.+++.|.|+|+|.|.
T Consensus         1 P~~P~~-~~v~~~s~~si~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~   76 (93)
T d1x4xa1           1 PDQCKP-PQVTCRSATCAQVNWEVPLS-NGTDVTEYRLEWGGVEGSMQICY--CGPGLSYEIKGLSPATTYYCRVQALSV   76 (93)
T ss_dssp             CCCCCC-CCCEEEETTEEEEECCCCSC-SSSCCCEEEEEEESSTTSCCEEE--EESCSEEEEESCCSSCEEEEEEEEECS
T ss_pred             CcCCCC-CEEEEeCCCeEEEEEEeccc-CCCeeEEEEEEEccCCCcceEee--cCCccEEEEcccceeeEEEEEEEEEEC
Confidence            455555 46777889999999998874 45688899999998777666544  346778999999999999999999999


Q ss_pred             CCCCCCCCc
Q psy12425        169 NGMGPPLEG  177 (591)
Q Consensus       169 ~g~~~~~~~  177 (591)
                      .|.+..+..
T Consensus        77 ~G~s~~S~~   85 (93)
T d1x4xa1          77 VGAGPFSEV   85 (93)
T ss_dssp             SCCCCBCCC
T ss_pred             CcCcCCCCc
Confidence            998877754

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.4e-09  Score=76.74  Aligned_cols=89  Identities=19%  Similarity=0.322  Sum_probs=70.4

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVN  167 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n  167 (591)
                      +|.+|.. +.+......++.|.|.+|...++ .+..|.+.+...+...+...........+.+.+|.+++.|.|+++|.|
T Consensus         3 ~P~~p~~-~~~~~~s~~si~v~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n   80 (98)
T d1x5la1           3 APSQVVV-IRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRART   80 (98)
T ss_dssp             CCCCCCC-EECSCBCSSCEEEEECCCSCCCS-CCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEECEEEEE
T ss_pred             CCCCCCc-eEEEeccCCEEEEEEECCCCCCC-CEEEEEEEeecccccceeeEEecCCceEEEECCCCCCCEEEEEEEEEc
Confidence            4665555 66777889999999998875554 788999999877655444444455678999999999999999999999


Q ss_pred             cCCCCCCCCcc
Q psy12425        168 ENGMGPPLEGI  178 (591)
Q Consensus       168 ~~g~~~~~~~~  178 (591)
                      ..|.+..+...
T Consensus        81 ~~G~g~~S~~v   91 (98)
T d1x5la1          81 SAGCGRFSQAM   91 (98)
T ss_dssp             TTEECCCCCCE
T ss_pred             CCCCcCCCCCE
Confidence            99988776543

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=2.6e-09  Score=75.02  Aligned_cols=88  Identities=19%  Similarity=0.254  Sum_probs=70.3

Q ss_pred             CCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCC-CccEEEEeeecCCceeeecCcccCCcEEEEEEEE
Q psy12425        189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGS-DAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ  267 (591)
Q Consensus       189 ~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~  267 (591)
                      ++.+|..+.+...+.+++.|+|..|....+..+.+|.|.++..+. ..|............+.|.+|.+++.|.|++.|.
T Consensus         6 P~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   85 (95)
T d2ibga1           6 PMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSF   85 (95)
T ss_dssp             CCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEEE
Confidence            444566677788888999999998766666789999999987654 4566555444566789999999999999999999


Q ss_pred             cCCCCCCCC
Q psy12425        268 NEAGLSLPS  276 (591)
Q Consensus       268 n~~g~~~~s  276 (591)
                      |..|.+..|
T Consensus        86 n~~G~s~~S   94 (95)
T d2ibga1          86 SAASASEFS   94 (95)
T ss_dssp             CSSCBCCCC
T ss_pred             eCCccCCCC
Confidence            999987654

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.8e-09  Score=77.58  Aligned_cols=105  Identities=28%  Similarity=0.348  Sum_probs=79.8

Q ss_pred             CCCCCCCCccCcccccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc-cEEEEeeecCCc
Q psy12425        169 NGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA-WQRVNVAICAPS  247 (591)
Q Consensus       169 ~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~  247 (591)
                      .|.|.++..  .+...+....|.+|..+.+.....+++.|+|.+|..+++ .+.+|.|.++...... +...........
T Consensus         2 ~G~G~pss~--~v~~~T~~~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g-~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~   78 (117)
T d1wfoa1           2 IGDGSPSHP--PILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLAPSAR   78 (117)
T ss_dssp             CCCCCCCCC--CSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCS-CCCEEEEEEEESSCCCSCCCEEEECTTCC
T ss_pred             ccCCCCCCC--CEEEECCCCCCcCCCCcEEEEecCCEEEEEEECCCCCCC-ceEEEeeeeeeccCCCceEeEEecCCceE
Confidence            355555432  344555667889999999999999999999998876654 7899999988765543 333334444567


Q ss_pred             eeeecCcccCCcEEEEEEEEcCCCCCCCC
Q psy12425        248 QINIPNLIEGRQYEFRVYAQNEAGLSLPS  276 (591)
Q Consensus       248 ~~~i~~l~~~~~~~y~c~a~n~~g~~~~s  276 (591)
                      .+.|.+|.++..|.|+++|.|..|.+..+
T Consensus        79 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  107 (117)
T d1wfoa1          79 QYTATGLKPESVYLFRITAQTRKGWGEAA  107 (117)
T ss_dssp             EEEEESCCSSSEEEEEEEEECSSCEEEEE
T ss_pred             EEEECCCCCCCEEEEEEEEECCCcCCCCc
Confidence            89999999999999999999999876543

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.9e-09  Score=75.60  Aligned_cols=85  Identities=29%  Similarity=0.488  Sum_probs=71.2

Q ss_pred             CCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEcc
Q psy12425         89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNE  168 (591)
Q Consensus        89 p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~  168 (591)
                      |++|.  +.+.....+++.|+|.+|...+ ..+..|.++++......|...........+.+.+|.+++.|.|++.|.|.
T Consensus         1 P~~P~--~~~~~~~~~sv~l~W~pP~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   77 (94)
T d2dn7a1           1 PGRPT--MMISTTAMNTALLQWHPPKELP-GELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNR   77 (94)
T ss_dssp             CCCCE--EEEEECSTTEEEEEEECCSSCS-SCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEET
T ss_pred             CCCCc--EeEEEEeCCEEEEEEeCCCCCC-CceEEEEEEEEEcCCCCcEEEEcCCCccEEEEEccCCeeEEEEEEEEEcC
Confidence            44554  3456678889999999987554 48899999999988888888877778889999999999999999999999


Q ss_pred             CCCCCCCC
Q psy12425        169 NGMGPPLE  176 (591)
Q Consensus       169 ~g~~~~~~  176 (591)
                      .|.+..+.
T Consensus        78 ~G~g~~s~   85 (94)
T d2dn7a1          78 AGLGEEFE   85 (94)
T ss_dssp             TEEEEEEE
T ss_pred             CcCCCCcc
Confidence            99876653

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.3e-09  Score=78.53  Aligned_cols=93  Identities=19%  Similarity=0.287  Sum_probs=73.0

Q ss_pred             ccCCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEE
Q psy12425        183 AKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEF  262 (591)
Q Consensus       183 ~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y  262 (591)
                      +++....|.+|..+.+.....+++.|+|.+|...++ .+.+|.|.++..+................+.|.+|.++..|.|
T Consensus         4 v~T~e~vP~~p~~l~~~~~~~~sv~l~W~~P~~~ng-~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   82 (106)
T d1wfna1           4 VRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTI   82 (106)
T ss_dssp             CCSSCCSCCCCSCCEEESCCSSEEEEECCCCTTCCS-CCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEE
T ss_pred             EEcCCCCCcCCCCcEEEEecCCEEEEEEECCCCCCC-cEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEEE
Confidence            344556788899999999999999999998876654 6889999998776544333333334557899999999999999


Q ss_pred             EEEEEcCCCCCCCC
Q psy12425        263 RVYAQNEAGLSLPS  276 (591)
Q Consensus       263 ~c~a~n~~g~~~~s  276 (591)
                      ++.|.|..|.+..+
T Consensus        83 ~V~A~n~~G~g~~s   96 (106)
T d1wfna1          83 EVAAMTSKGQGQVS   96 (106)
T ss_dssp             EEEEECSSCEEEEE
T ss_pred             EEEEECCCCCcCCc
Confidence            99999999987644

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=7.3e-09  Score=72.00  Aligned_cols=86  Identities=13%  Similarity=0.174  Sum_probs=67.6

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVN  167 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n  167 (591)
                      .|..|.+ +.+......++.|+|.+|....+..+..|.+.+...... +..   ......++|.+|.+++.|.|+|+|.|
T Consensus         2 ~p~~p~~-L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~-~~~---~~~~t~~~i~~L~p~t~Y~~rV~A~n   76 (94)
T d1x5aa1           2 ESLSGLS-LKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEE-WHQ---MVLEPRVLLTKLQPDTTYIVRVRTLT   76 (94)
T ss_dssp             CCCCSCC-CCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCE-EEE---EESSSEEEEESCCSSCEEEEEEEEEC
T ss_pred             cCCCCCc-eEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCce-EEE---eeccCEEEECCCCCCCEEEEEEEEEc
Confidence            3555555 788888999999999998755566667899999876542 222   23567899999999999999999999


Q ss_pred             cCCCCCCCCcc
Q psy12425        168 ENGMGPPLEGI  178 (591)
Q Consensus       168 ~~g~~~~~~~~  178 (591)
                      ..|.+..+...
T Consensus        77 ~~G~g~~S~~~   87 (94)
T d1x5aa1          77 PLGPGPFSPDH   87 (94)
T ss_dssp             SSSCCCCCCCE
T ss_pred             CCcCcCCCCCE
Confidence            99998877543

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.8e-09  Score=75.02  Aligned_cols=82  Identities=20%  Similarity=0.301  Sum_probs=67.9

Q ss_pred             cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCC
Q psy12425         96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPL  175 (591)
Q Consensus        96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~  175 (591)
                      +.+......++.|.|.+|...+| .+..|.+.++......+...........+.+.+|.+++.|.|+|+|.|..|.+..+
T Consensus         7 l~~~~~t~~si~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S   85 (95)
T d2djsa1           7 MHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFS   85 (95)
T ss_dssp             CEEEEECSSEEEEECCCCSCCSS-CEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEEEEEEEESSCEEEEC
T ss_pred             cEEEeecCCEEEEEEEECCCCCc-ceEEeeeeeeeeccCcceeEeecCCccEEEEeecCCccEEEEEEEEEcCCCCCCCC
Confidence            67778899999999999875554 78899999988876665555555677889999999999999999999999988766


Q ss_pred             Ccc
Q psy12425        176 EGI  178 (591)
Q Consensus       176 ~~~  178 (591)
                      ...
T Consensus        86 ~~~   88 (95)
T d2djsa1          86 GKM   88 (95)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            543

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.7e-09  Score=75.98  Aligned_cols=89  Identities=29%  Similarity=0.360  Sum_probs=75.2

Q ss_pred             CCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEE
Q psy12425        188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ  267 (591)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~  267 (591)
                      .+|.+|..+.+......+++|+|.+|..+.+..+.+|.+.++..+...+............+.+.+|.++..|.|++.|.
T Consensus         9 ~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A~   88 (107)
T d1x5fa1           9 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQ   88 (107)
T ss_dssp             CCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEEE
Confidence            46778888889999999999999988666666788999999887777777766666667899999999999999999999


Q ss_pred             cCCCCCCCC
Q psy12425        268 NEAGLSLPS  276 (591)
Q Consensus       268 n~~g~~~~s  276 (591)
                      |..|.+..+
T Consensus        89 n~~G~g~~S   97 (107)
T d1x5fa1          89 NKHGSGESS   97 (107)
T ss_dssp             CSSCEEEEC
T ss_pred             eCCCCcCCC
Confidence            999977644

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=7.2e-09  Score=74.15  Aligned_cols=92  Identities=14%  Similarity=0.220  Sum_probs=74.5

Q ss_pred             CCCCCCCCcceEEe--cCceEEEEecCCCC-CCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEE
Q psy12425         88 LPGPPIGPLDVSEI--TKHTCTLHWNPPKY-DGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVM  164 (591)
Q Consensus        88 ~p~~p~~~~~~~~~--~~~~~~l~w~~p~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~  164 (591)
                      +|++|.+ +.+..+  ....+.|+|.+|.. +.+..+..|.++++......|...........+.+.+|.+++.|.|+|+
T Consensus         1 kP~pP~~-l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVr   79 (104)
T d1n26a3           1 QPDPPAN-ITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLR   79 (104)
T ss_dssp             CCCCCEE-EEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGGGCSEEEESSCCTTCCEEEEEE
T ss_pred             CCcCCCC-CEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeeccccceEEEEECCCCCCCEEEEEEE
Confidence            3677766 455554  34579999998863 4566778899999999888999888777788999999999999999999


Q ss_pred             EEccCCCCCCCCccCc
Q psy12425        165 AVNENGMGPPLEGINP  180 (591)
Q Consensus       165 a~n~~g~~~~~~~~~~  180 (591)
                      |.|..|.|..+..+..
T Consensus        80 a~n~~g~g~wSewS~~   95 (104)
T d1n26a3          80 AQEEFGQGEWSEWSPE   95 (104)
T ss_dssp             EEETTTBSCCCCCCCC
T ss_pred             EEeCCCccCCcCCcCC
Confidence            9999999887765443

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=7e-10  Score=77.80  Aligned_cols=84  Identities=19%  Similarity=0.285  Sum_probs=60.1

Q ss_pred             ceeeeecCCeEEEEEEecc--CCCceEEEEECCEEeecC---C-----ceeEEEeCCeEEEEEcccCCCCceEEEEEEEc
Q psy12425          3 NALYIPEGDNTKVKIFYAG--DQPMEVSLTKNGRVVQSD---D-----RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~~~~~~~~---~-----~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      ..+....|++|+|.|....  .....|.|+|++..+..-   .     ..+.....+ .+|+|.+++.+|+|.|+|.+.+
T Consensus         3 ~tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~n-gSL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           3 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN-GDLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT-SCEEESSCCGGGCEEEEEEEEE
T ss_pred             cEEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCC-ccEEEeCCCHHHCEEEEEEEEe
Confidence            3577889999999996432  233579999998776321   0     001112222 3799999999999999999999


Q ss_pred             CCeee--EEEEEEEEec
Q psy12425         73 SSGSV--SGTFTINITG   87 (591)
Q Consensus        73 ~~g~~--~~~~~l~v~~   87 (591)
                      ..|..  +..+.|.|.+
T Consensus        82 ~~g~~~~~~~~~L~V~E   98 (98)
T d1hnga1          82 TNGTRILNKALDLRILE   98 (98)
T ss_dssp             TTCCEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEEEEC
Confidence            98876  5667787753

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.91  E-value=4.3e-09  Score=74.53  Aligned_cols=72  Identities=19%  Similarity=0.298  Sum_probs=56.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEEe------------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRVV------------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.|.+|++|+|.|.........+.|||.  |+..            ....++.....++..+|.|.+++++|+|.|.
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYY   87 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEe
Confidence            7789999999999999987665667999973  3211            1235666666777889999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (106)
T d1i8ka_          88 CLQSFN   93 (106)
T ss_dssp             EEECSS
T ss_pred             EecCcc
Confidence            987543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.90  E-value=6.4e-09  Score=73.42  Aligned_cols=72  Identities=17%  Similarity=0.165  Sum_probs=56.0

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEEe------------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRVV------------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||.  |+..            ....++.....++...|.|.+++++|+|.|.
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   87 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEE
Confidence            7789999999999999987766667999982  3211            1124555566667789999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (107)
T d1c5cl1          88 CLQYAS   93 (107)
T ss_dssp             EEECSS
T ss_pred             EecCcC
Confidence            987653

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.88  E-value=4.8e-09  Score=74.43  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=55.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|...+.....+.|||-  |.   .+         ....++.....++...|.|.+++++|+|.|.
T Consensus         8 P~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1ospl1           8 SSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYF   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEE
Confidence            7789999999999999997665567999982  21   11         1125566666666789999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+...
T Consensus        88 Ca~~~~   93 (107)
T d1ospl1          88 CQQYWS   93 (107)
T ss_dssp             EEECSS
T ss_pred             EeeccC
Confidence            987644

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.88  E-value=1.3e-08  Score=73.13  Aligned_cols=92  Identities=26%  Similarity=0.394  Sum_probs=67.3

Q ss_pred             CCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecC-CCccEEEEeeec-----------CCceeeecCcccCCc
Q psy12425        192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG-SDAWQRVNVAIC-----------APSQINIPNLIEGRQ  259 (591)
Q Consensus       192 ~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~i~~l~~~~~  259 (591)
                      ||..+.+.....++++|+|.+|. +++.++.+|.|+++..+ ...|........           ....++|.+|.++..
T Consensus         2 PP~~p~v~~~~~~sv~l~W~~P~-~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   80 (107)
T d2ic2a1           2 PPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHT   80 (107)
T ss_dssp             CCCCCEEEECC---EEEEEEEEC-CSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEE
T ss_pred             cCcCCEEEEEECCEEEEEEEeCc-cccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcE
Confidence            45666788889999999999986 45678999999988664 345655543221           134789999999999


Q ss_pred             EEEEEEEEcCCCCCCCCCCcceEEE
Q psy12425        260 YEFRVYAQNEAGLSLPSSASNSVQI  284 (591)
Q Consensus       260 ~~y~c~a~n~~g~~~~s~~~~~~~~  284 (591)
                      |.|++.|.|..|.+..+..+..+..
T Consensus        81 Y~frV~A~N~~G~s~~S~~s~~~~~  105 (107)
T d2ic2a1          81 YRFRILAVYSNNDNKESNTSAKFYL  105 (107)
T ss_dssp             EEEEEEEEETTSCEEECCCCCCEEE
T ss_pred             EEEEEEEEcCCCCCCCCCCCCCEEc
Confidence            9999999999999887766655543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.87  E-value=8e-09  Score=73.35  Aligned_cols=72  Identities=17%  Similarity=0.214  Sum_probs=56.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  |+   .|         ....++.....+....|+|.+++++|++.|.
T Consensus         8 P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Yy   87 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEE
Confidence            7889999999999999997655678899883  21   11         1224566666777889999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+...
T Consensus        88 Ca~~~~   93 (107)
T d1tjgl1          88 CQQLHF   93 (107)
T ss_dssp             EEECSB
T ss_pred             EEECcC
Confidence            976644

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.87  E-value=8e-09  Score=73.21  Aligned_cols=72  Identities=15%  Similarity=0.151  Sum_probs=56.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--C-EE-e----------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--G-RV-V----------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~-~~-~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  | .. +          ....++.....+...+|.|.+++++|++.|.
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Yy   86 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYY   86 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEE
Confidence            7789999999999999987666667999982  1 11 1          1124666667777899999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+...
T Consensus        87 Ca~~~~   92 (106)
T d1a0ql1          87 CLQYYN   92 (106)
T ss_dssp             EEECSS
T ss_pred             EEEeCC
Confidence            987543

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.8e-09  Score=88.58  Aligned_cols=187  Identities=11%  Similarity=0.019  Sum_probs=76.2

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVN  167 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n  167 (591)
                      .|.+|.. +.+......++.|+|.+|...+| .+.+|.|.++......+..     .........+.+...|.+++.+.+
T Consensus         2 ~Ps~P~~-~~~~~~s~~si~vsW~pP~~~ng-~i~~Y~V~~~~~~~~~~~~-----~~~~~~~~~~~~~~~y~~~v~~~~   74 (196)
T d2dtge2           2 NPSVPLD-PISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELF-----ELDYCLKGLKLPSRTWSPPFESED   74 (196)
T ss_dssp             CCCCCEE-EEEEECSSSCEEEEEECCCCSSS-SCSEEECCEEEECCCCSCT-----TCSSSCSCCCCCC-----------
T ss_pred             cCcCCcC-CEEEeccCCEEEEEEECCCCCCC-cEEEEEEEEEcCCCCCcee-----EEeeEEeccccceeEEEEEEEEEc
Confidence            4777776 56777889999999999886665 7889999887655433221     112222334556788999999988


Q ss_pred             cCCCCCCCCccCccccc----CCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeee
Q psy12425        168 ENGMGPPLEGINPIKAK----SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAI  243 (591)
Q Consensus       168 ~~g~~~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~  243 (591)
                      ..+.+............    ....++..+....+.......+.+.|..+..... ....|.+.........+  .....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~  151 (196)
T d2dtge2          75 SQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRK-RRSLGDVGNAGNNEEHR--PFEKV  151 (196)
T ss_dssp             ----------------------------------------------------------------------CCS--CSCEE
T ss_pred             CCccccCcCCccceecCCCCccccccccCCcCcEEEeccCCceeecccCcCCCcc-ceEEEEEEeecCCCccE--EEEec
Confidence            77765443322211111    1111112222233333444455666655422211 11112222221111111  11122


Q ss_pred             cCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcceEEE
Q psy12425        244 CAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQI  284 (591)
Q Consensus       244 ~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~  284 (591)
                      ....+++|.+|.+++.|.|++.|.|..|.+..++.+..+..
T Consensus       152 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~  192 (196)
T d2dtge2         152 VNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSA  192 (196)
T ss_dssp             CSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEE
T ss_pred             cceEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceEEe
Confidence            34578999999999999999999999988876655555544

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4e-09  Score=76.76  Aligned_cols=97  Identities=23%  Similarity=0.376  Sum_probs=73.5

Q ss_pred             CCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCc---cEEEEe--eecCCceeeecCcccCCc
Q psy12425        185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDA---WQRVNV--AICAPSQINIPNLIEGRQ  259 (591)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~---~~~~~~--~~~~~~~~~i~~l~~~~~  259 (591)
                      .+..+|.+|..+.+.....++++|+|.++. +++..+..|.+++.......   |.....  .......+.+.+|.++..
T Consensus         6 ~p~~~P~~P~~~~~~~~~~~sv~l~W~pp~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~   84 (111)
T d1wisa1           6 VPPELPGPPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTC   84 (111)
T ss_dssp             CCCCCCCCCEEEEEESCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSE
T ss_pred             CCCCCCcCCCCCEEEEcCCCEEEEEEeCCC-CCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCE
Confidence            455678888888888888999999999775 44568899999887654433   233322  223456789999999999


Q ss_pred             EEEEEEEEcCCCCCCCCCCcceE
Q psy12425        260 YEFRVYAQNEAGLSLPSSASNSV  282 (591)
Q Consensus       260 ~~y~c~a~n~~g~~~~s~~~~~~  282 (591)
                      |.|+++|.|..|.+.++..+..+
T Consensus        85 Y~frV~A~N~~G~s~~S~~s~~~  107 (111)
T d1wisa1          85 YSFRMRQVNIVGTSPPSQPSRKI  107 (111)
T ss_dssp             ECCCCEEECSSCBCCCCCCCCCE
T ss_pred             EEEEEEEEcCCcCCCCcCCCCCE
Confidence            99999999999998877655433

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.8e-09  Score=75.98  Aligned_cols=85  Identities=21%  Similarity=0.132  Sum_probs=64.5

Q ss_pred             CCCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEeeeCCCCceEEecee-----eeeEEEEcCcccCceEEEEEE
Q psy12425        481 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT-----RFTTMAITGLSPGHQYEFRVY  555 (591)
Q Consensus       481 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~~~~Y~~~v~  555 (591)
                      .|. |.++++... .....|+|++|..+++  ...|.|+++......|..+...     ....+.+.+|.++..|.|||+
T Consensus         4 lP~-P~nv~~~s~-n~~~~L~W~pp~~~g~--~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVr   79 (99)
T d1y6kr1           4 LPS-PPSVWFEAE-FFHHILHWTPIPQQSE--STCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVR   79 (99)
T ss_dssp             CCC-CSCEEEEEE-TTEEEEEECCCTTCCT--TCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEE
T ss_pred             CCC-CCcceEEEE-CCEEEEEEcCCCCcCC--CCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEE
Confidence            454 667887654 4578899998875554  3679999998888899887321     123345688999999999999


Q ss_pred             EEcCCcCCCCCCCc
Q psy12425        556 AENVYGRSDPSTTS  569 (591)
Q Consensus       556 A~n~~G~~~~s~~~  569 (591)
                      |.|..|.|.++...
T Consensus        80 A~n~~g~S~Ws~t~   93 (99)
T d1y6kr1          80 AVDGSRHSQWTVTN   93 (99)
T ss_dssp             EEETTEECCCEECS
T ss_pred             EEcCCCcCCCcccC
Confidence            99999999887543

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.86  E-value=1.4e-08  Score=72.35  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=56.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  ++   .+         ....++..........|.|.+++++|+|.|.
T Consensus         8 P~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Yy   87 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYY   87 (107)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEE
Confidence            7889999999999999997766667999983  21   11         1235566666777889999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+...
T Consensus        88 Ca~~~~   93 (107)
T d1kcvl1          88 CGQSYS   93 (107)
T ss_dssp             EEECSS
T ss_pred             EEecCC
Confidence            987543

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=1.1e-08  Score=73.28  Aligned_cols=94  Identities=15%  Similarity=0.067  Sum_probs=71.3

Q ss_pred             CCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeec-CCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcC
Q psy12425        191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEV-GSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNE  269 (591)
Q Consensus       191 ~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~  269 (591)
                      ..|..+.+...+.+++.|+|.++...+ ..+..|.|+|+.. +...|..+.........+.+.+|.+++.|.|+++|.+.
T Consensus         9 ~~P~~p~~~~~~~~~i~v~W~pp~~~~-~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~   87 (106)
T d1cd9b2           9 ALDIGPDVVSHQPGCLWLSWKPWKPSE-YMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRS   87 (106)
T ss_dssp             ECCC-------CCSCEEEEEECCGGGT-TSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEES
T ss_pred             CCCCCCeEecCCCCEEEEEEcCcccCC-ccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEeC
Confidence            445566777778889999999876544 4678899999864 56689888777767788999999999999999999999


Q ss_pred             CCCCCCCCCcceEEEc
Q psy12425        270 AGLSLPSSASNSVQIK  285 (591)
Q Consensus       270 ~g~~~~s~~~~~~~~~  285 (591)
                      .|.+.+++.+..+.+.
T Consensus        88 ~g~g~wS~wS~~~~~~  103 (106)
T d1cd9b2          88 SLPGFWSPWSPGLQLR  103 (106)
T ss_dssp             SSCCCCCCCCCCEEEC
T ss_pred             CCCCCCcCCCCCeEec
Confidence            9998888777666543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.85  E-value=1.4e-08  Score=72.24  Aligned_cols=72  Identities=17%  Similarity=0.180  Sum_probs=56.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEEe------------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRVV------------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  |+.+            ....++.....+....|+|.+++++|+|.|.
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEE
Confidence            7789999999999999987655667999983  2111            1235677777777899999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (107)
T d1j1pl_          88 CQQANS   93 (107)
T ss_dssp             EEECSS
T ss_pred             EEcCCC
Confidence            987544

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.84  E-value=1.6e-08  Score=71.61  Aligned_cols=72  Identities=13%  Similarity=0.147  Sum_probs=56.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECC-----EEe---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG-----RVV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~-----~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|...+.....+.|||-.     +.|         ....++.....+....|.|.+++++|+|.|.
T Consensus         7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1op3k1           7 PSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYH   86 (106)
T ss_dssp             CSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEe
Confidence            78899999999999999876656679999832     111         1124666666777789999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+...
T Consensus        87 Ca~~~~   92 (106)
T d1op3k1          87 CQHYAG   92 (106)
T ss_dssp             EEEECS
T ss_pred             eeeCCC
Confidence            987643

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.2e-09  Score=74.97  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=55.9

Q ss_pred             ceeecCCCeEEEEEeeeccCCCeEEEeeCCeEeeecc----------ceEEEecCCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        397 TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG----------HFHVETSERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       397 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                      .+....|++++|.|.. +.|.+.|.|++++..+....          ...+........|+|.+++++|+|.|+|.|.|.
T Consensus         4 ~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            3456789999999986 46888999999987764211          112223345678999999999999999999988


Q ss_pred             CCccc
Q psy12425        467 LGMDS  471 (591)
Q Consensus       467 ~g~~~  471 (591)
                      .+...
T Consensus        83 ~~t~~   87 (93)
T d1ccza1          83 TDTMK   87 (93)
T ss_dssp             CSCEE
T ss_pred             CcEEE
Confidence            77554

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=2.6e-08  Score=71.84  Aligned_cols=73  Identities=19%  Similarity=0.263  Sum_probs=54.0

Q ss_pred             CceeeeecCCeEEEEEEeccC-CCceEEEEEC--CE-E--e----------ecCCceeEEEeC--CeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD-QPMEVSLTKN--GR-V--V----------QSDDRFKFTVLD--DYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~--~~-~--~----------~~~~~~~~~~~~--~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++|+|.|.+.+. ....+.|||-  |+ +  +          ....|+.+....  ....|.|.+++++|+
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   85 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDS   85 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCC
Confidence            788999999999999998653 3457899982  21 1  1          223456665433  347899999999999


Q ss_pred             eEEEEEEEcCC
Q psy12425         64 GDYTVNLSNSS   74 (591)
Q Consensus        64 g~Y~c~~~n~~   74 (591)
                      |.|.|.+....
T Consensus        86 g~YyCa~~~~~   96 (114)
T d3bp5a1          86 GIYLCGAISLH   96 (114)
T ss_dssp             EEEEEEEECSS
T ss_pred             eEEEEEEEeCC
Confidence            99999987543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.8e-09  Score=75.93  Aligned_cols=88  Identities=16%  Similarity=0.321  Sum_probs=60.5

Q ss_pred             CceeeeecCCeEEEEEEeccC---CCceEEEEECCE-----Ee---------ecCCceeEEE--eCCeEEEEEcccCCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD---QPMEVSLTKNGR-----VV---------QSDDRFKFTV--LDDYIIIFIKEIRKED   62 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~---p~~~v~W~~~~~-----~~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d   62 (591)
                      |+.+.+.+|++|+|.|.+...   ....+.|+|...     .+         ....+..+..  .....+|.|.+++.+|
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D   85 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   85 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence            788999999999999998543   234678988431     11         0113333332  3344799999999999


Q ss_pred             ceEEEEEEEcCCeeeEEEEEEEEecCC
Q psy12425         63 AGDYTVNLSNSSGSVSGTFTINITGLP   89 (591)
Q Consensus        63 ~g~Y~c~~~n~~g~~~~~~~l~v~~~p   89 (591)
                      +|.|.|.+..........+.|.|.+..
T Consensus        86 sG~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (116)
T d1xeda_          86 SGRYKCGLGINSRGLSFDVSLEVLEHH  112 (116)
T ss_dssp             CEEEEEEESCGGGCCEEEEEEEEECCC
T ss_pred             CEEEEEEEEcCCCCceEeEEEEEECCC
Confidence            999999986554444556788887643

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.7e-08  Score=74.27  Aligned_cols=99  Identities=24%  Similarity=0.426  Sum_probs=76.3

Q ss_pred             EEEEEecCCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCC--CceEEEEeecCcceEEEcCCcCCcE
Q psy12425         81 FTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM--PHWICISTTCHDTTFIVQGLTEGQE  158 (591)
Q Consensus        81 ~~l~v~~~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~  158 (591)
                      ....+.+.|.+|.. +.+......++.|+|.++. .++..+..|.+++.....  ..|...........+.+.+|.+++.
T Consensus         9 ~~~~v~d~P~~P~~-~~v~~~~~~sv~l~W~~p~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   86 (127)
T d1ueya_           9 TPAPVYDVPNPPFD-LELTDQLDKSVQLSWTPGD-DNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVN   86 (127)
T ss_dssp             CCCCCCCSCCCCEE-EEEECCSSSCEEEEEECCC-CCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCE
T ss_pred             ccccccccCcCCCC-cEEEEecCCeEEEEEeCCc-ccccceEeeeeeeccccccceeEEEEeecCCceEEEECCCccCCE
Confidence            33456677887766 6777888999999999876 455578889998886643  3455555566777899999999999


Q ss_pred             EEEEEEEEccCCCCCCCCccCcc
Q psy12425        159 YLFHVMAVNENGMGPPLEGINPI  181 (591)
Q Consensus       159 y~~~~~a~n~~g~~~~~~~~~~~  181 (591)
                      |.|+++|.|..|.+..+.....+
T Consensus        87 Y~frV~A~n~~G~s~~S~~s~~~  109 (127)
T d1ueya_          87 YSFRVMAVNSIGKSLPSEASEQY  109 (127)
T ss_dssp             ECCEEEEEESSCBCCCCSCCCCE
T ss_pred             EEEEEEEEcCCcCcCCcCCcccE
Confidence            99999999999998877654433

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=4.1e-09  Score=75.06  Aligned_cols=80  Identities=11%  Similarity=0.120  Sum_probs=55.6

Q ss_pred             eeeecCCeEEEEEEeccCCCceEEEEECCEEee-----------------cCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQ-----------------SDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      ..+.+|++|.|.|.........+.|+|+.....                 ...+-|....++ .+|.|.+++.+|+|.|.
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~n-gSL~I~~v~~~D~G~Y~   87 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN-GSLLFQMITMKDMGVYT   87 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTT-SCEEECSCCGGGCEEEE
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEccc-ccEEEcCCCchhCEEEE
Confidence            457799999999986545567899999653210                 011123333343 48999999999999999


Q ss_pred             EEEEcCCee-eEEEEEEEE
Q psy12425         68 VNLSNSSGS-VSGTFTINI   85 (591)
Q Consensus        68 c~~~n~~g~-~~~~~~l~v   85 (591)
                      |.+.+..+. .+..+.|.|
T Consensus        88 c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          88 LDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEETTEEECCCCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            999887654 345566655

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.81  E-value=2.3e-08  Score=70.79  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=54.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee-------e--cCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV-------Q--SDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~-------~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  +.   .+       .  ...++.....+....|+|.+++++|+|.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Yy   87 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYI   87 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEE
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEE
Confidence            7789999999999999997655667999883  11   11       0  123344555666789999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+.+.
T Consensus        88 CA~~~~   93 (108)
T d1jhll_          88 CQQHNE   93 (108)
T ss_dssp             EEECSS
T ss_pred             EeeCCC
Confidence            986654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=2.5e-08  Score=70.74  Aligned_cols=71  Identities=15%  Similarity=0.214  Sum_probs=55.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--C---EEe---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--G---RVV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~---~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|...+.....+.|||-  |   +.+         ....++.....+....|.|.+++++|+|.|.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence            5679999999999999997655667999973  2   111         1134666666777789999999999999999


Q ss_pred             EEEEc
Q psy12425         68 VNLSN   72 (591)
Q Consensus        68 c~~~n   72 (591)
                      |.+..
T Consensus        87 Ca~~~   91 (106)
T d1lk3l1          87 CQQSW   91 (106)
T ss_dssp             EEECS
T ss_pred             ccccc
Confidence            97643

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.5e-08  Score=70.60  Aligned_cols=82  Identities=17%  Similarity=0.146  Sum_probs=66.4

Q ss_pred             CCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCC
Q psy12425         91 PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG  170 (591)
Q Consensus        91 ~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g  170 (591)
                      +|.+ +.+......++.|+|.+|.    ..+.+|.+.+.......+...........+.+.+|.+++.|.|+++|.|..|
T Consensus         4 aP~n-~~~~~~s~~si~l~W~~p~----~~~~~Y~i~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   78 (92)
T d1qg3a1           4 APQN-PNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG   78 (92)
T ss_dssp             CCEE-EEEEECSTTCEEEEEECCS----SCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEECSSC
T ss_pred             cCCC-CEEEEccCCEEEEEEEecC----CCccceEEeeeeccccccEEEEecCCccEEEECCCCCCcEEEEEEEEEeCCc
Confidence            4444 5677788999999999875    2467899999887766655555566778999999999999999999999999


Q ss_pred             CCCCCCc
Q psy12425        171 MGPPLEG  177 (591)
Q Consensus       171 ~~~~~~~  177 (591)
                      .+..+..
T Consensus        79 ~g~~S~~   85 (92)
T d1qg3a1          79 EGPYSSL   85 (92)
T ss_dssp             BCCCCCC
T ss_pred             CcCCCCC
Confidence            9877654

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.79  E-value=2.2e-08  Score=70.94  Aligned_cols=72  Identities=18%  Similarity=0.224  Sum_probs=55.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  |+   .|         ....++.....++...|.|.+++++|++.|.
T Consensus         8 p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~Yy   87 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYF   87 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEE
Confidence            6779999999999999987665567999972  21   11         1125666666677789999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+...
T Consensus        88 Ca~~~~   93 (107)
T d1mexl1          88 CQQYNS   93 (107)
T ss_dssp             EEECSS
T ss_pred             EeECCC
Confidence            987543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.79  E-value=2.7e-08  Score=70.57  Aligned_cols=72  Identities=18%  Similarity=0.233  Sum_probs=55.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  +.   .+         ....++.....+....|.|.+++++|+|.|.
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEE
Confidence            7789999999999999987666667899973  21   11         1124566666777789999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.....
T Consensus        88 Ca~~~~   93 (107)
T d1d5il1          88 CLQYDE   93 (107)
T ss_dssp             EEECSS
T ss_pred             eeeccC
Confidence            987643

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.79  E-value=1.6e-08  Score=71.41  Aligned_cols=72  Identities=17%  Similarity=0.263  Sum_probs=54.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEE---e---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRV---V---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  |..   +         ....++......+...|.|.+++++|+|.|.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   84 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY   84 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence            5689999999999999987655567899983  211   1         1124555666677789999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+...
T Consensus        85 CA~~~~   90 (103)
T d8faba1          85 CQAWDN   90 (103)
T ss_dssp             EEEEET
T ss_pred             eeecCC
Confidence            987644

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.78  E-value=2.9e-08  Score=70.85  Aligned_cols=72  Identities=18%  Similarity=0.220  Sum_probs=55.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--C---EEe---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--G---RVV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~---~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++++|.|...+.....+.|||-  |   +.|         ....++.....+....|+|.+++++|+|.|.
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Yy   89 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYY   89 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEE
Confidence            7789999999999999997765667899983  1   111         1124566666677789999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+...
T Consensus        90 CA~~~~   95 (109)
T d1bwwa_          90 CQQYQS   95 (109)
T ss_dssp             EEECSS
T ss_pred             EeecCC
Confidence            987643

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.78  E-value=3.2e-08  Score=67.90  Aligned_cols=80  Identities=24%  Similarity=0.424  Sum_probs=68.3

Q ss_pred             CCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCC
Q psy12425         91 PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG  170 (591)
Q Consensus        91 ~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g  170 (591)
                      +|.. +.+..+...++.|+|.+|.    ..+..|.+.+.......|...........+.+.+|.+++.|.|++.|.|..|
T Consensus         3 ~P~~-l~v~~v~~~s~~l~W~~~~----~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   77 (88)
T d1qr4a2           3 SPKG-ISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFE   77 (88)
T ss_dssp             CCSC-EEEESCCSSCEEEEECCCS----SCCSEEEEEEEETTCCCCEEEEEETTCCEEEECSCCSSCEEEEEEEEEETTE
T ss_pred             CCcc-eEEEEecCCEEEEEEEccc----EeeceEEEEEEeccCCceEEEEecCCccEEEECCCCCCCEEEEEEEEEeCCC
Confidence            4455 7788889999999999875    3678999999998888888777777888999999999999999999999998


Q ss_pred             CCCCC
Q psy12425        171 MGPPL  175 (591)
Q Consensus       171 ~~~~~  175 (591)
                      .+.+.
T Consensus        78 ~s~p~   82 (88)
T d1qr4a2          78 ESEPI   82 (88)
T ss_dssp             ECCCE
T ss_pred             CcCCE
Confidence            76553

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.9e-08  Score=69.47  Aligned_cols=83  Identities=19%  Similarity=0.216  Sum_probs=69.4

Q ss_pred             CCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEc
Q psy12425        189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN  268 (591)
Q Consensus       189 ~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n  268 (591)
                      +| +|..+.+.....+++.|+|.+|.   +..+.+|.++++..+...|............++|.+|.++..|.|++.|.|
T Consensus         6 vp-~P~~l~v~~~t~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~   81 (95)
T d2fnba_           6 VP-QLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLI   81 (95)
T ss_dssp             SC-CCTTCEEECCCSSCEEEECCCCC---CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEE
T ss_pred             cC-cCCCeEEEEEcCCEEEEEEEecC---CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEe
Confidence            44 67889999999999999999863   346889999999887777766665555678999999999999999999999


Q ss_pred             CCCCCCC
Q psy12425        269 EAGLSLP  275 (591)
Q Consensus       269 ~~g~~~~  275 (591)
                      ..|.+.+
T Consensus        82 ~~g~s~p   88 (95)
T d2fnba_          82 NGGESAP   88 (95)
T ss_dssp             TTEECCC
T ss_pred             CCcEeCC
Confidence            9887654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.1e-08  Score=76.16  Aligned_cols=83  Identities=13%  Similarity=0.287  Sum_probs=59.1

Q ss_pred             eeeeecCCeEEEEEEeccCC----CceEEEEECCE----------------Eee---cC--CceeEEE---eCCeEEEEE
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ----PMEVSLTKNGR----------------VVQ---SD--DRFKFTV---LDDYIIIFI   55 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~~~----------------~~~---~~--~~~~~~~---~~~~~~l~i   55 (591)
                      .+.+.+|+++.|.|.+...+    ...+.|++...                ...   ..  +|..+..   ..+..+|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            58899999999999986533    24689987311                000   01  2222221   112368999


Q ss_pred             cccCCCCceEEEEEEEcCCeeeEEEEEEEEe
Q psy12425         56 KEIRKEDAGDYTVNLSNSSGSVSGTFTINIT   86 (591)
Q Consensus        56 ~~~~~~d~g~Y~c~~~n~~g~~~~~~~l~v~   86 (591)
                      .+++.+|+|.|.|.+.+..|.....+.|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999998888888888875

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.77  E-value=3.9e-08  Score=70.22  Aligned_cols=89  Identities=18%  Similarity=0.156  Sum_probs=70.1

Q ss_pred             CCCCCCCCeEEeecCCeEEEEEecCC-CCCCcceEEEEEEeeecC-CCccEEEEeeecCCceeeecCcccCCcEEEEEEE
Q psy12425        189 KPSPPGIPVVTQVGGDFVNLSWDKPL-DDGGSRIQGYWIDKHEVG-SDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYA  266 (591)
Q Consensus       189 ~p~~~~~~~~~~~~~~~v~l~w~~~~-~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a  266 (591)
                      ++.+|..+.+.....+++.|+|.++. ...+..+.+|.|.++..+ ...|............+.|.+|.++..|.|++.|
T Consensus         4 P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   83 (105)
T d1cfba2           4 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVA   83 (105)
T ss_dssp             CSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEE
T ss_pred             CCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEEE
Confidence            44577888888888999999998743 233447889999998765 4456665555556678999999999999999999


Q ss_pred             EcCCCCCCCCC
Q psy12425        267 QNEAGLSLPSS  277 (591)
Q Consensus       267 ~n~~g~~~~s~  277 (591)
                      .|..|.+..+.
T Consensus        84 ~N~~G~gp~S~   94 (105)
T d1cfba2          84 INDRGESNVAA   94 (105)
T ss_dssp             EETTEECSSCC
T ss_pred             EeCCcCCCCCC
Confidence            99999987654

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=7.9e-08  Score=71.56  Aligned_cols=92  Identities=16%  Similarity=0.241  Sum_probs=64.2

Q ss_pred             cccceeccccEEEEEEEcCC---CCCeeEEecCCccC---------------C--CCCceEEEE---eCCeEEEEEccee
Q psy12425        300 RNANAIQNHNAQFQCTITGC---PKPTISWLKGSREI---------------T--PSARHHIFA---EGDTYTLIINSVY  356 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~---p~~~v~W~~~~~~~---------------~--~~~~~~~~~---~~~~~~l~i~~~~  356 (591)
                      ..+.+..|+++.|.|.+...   ....+.|++.+...               .  ...+..+..   ..+..+|.|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            34667899999999997532   33468998754211               0  011222221   1235799999999


Q ss_pred             cccceEEEEEEEeCCcceeeeeEEEEecCCcccCC
Q psy12425        357 GVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP  391 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~  391 (591)
                      ..|+|.|+|.+.+..+.....+.|.|..|+....|
T Consensus        90 ~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~~~p  124 (126)
T d1pkoa_          90 FSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINP  124 (126)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECTTTTSST
T ss_pred             hhHCeEEEEEEEECCCEEEEEEEEEEeCCCEEeCC
Confidence            99999999999999888888889999886554433

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.75  E-value=6.1e-08  Score=69.21  Aligned_cols=88  Identities=18%  Similarity=0.217  Sum_probs=61.3

Q ss_pred             CceeeeecCCeEEEEEEeccC--CCceEEEEECC-----EEe---------ecCCceeEEEeCCeEEEEEcccCCCCceE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD--QPMEVSLTKNG-----RVV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~~-----~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~   65 (591)
                      |..+.+.+|++|+|.|.+.+.  ....+.|||-.     +.|         ...+++......+.+.|.|.+++++|++.
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~   86 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEAD   86 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCce
Confidence            457899999999999998764  34678999842     111         11245666666778999999999999999


Q ss_pred             EEEEEEcCCeeeE---EEEEEEEecCC
Q psy12425         66 YTVNLSNSSGSVS---GTFTINITGLP   89 (591)
Q Consensus        66 Y~c~~~n~~g~~~---~~~~l~v~~~p   89 (591)
                      |.|.+........   .-..|+|...|
T Consensus        87 YyCA~~~~~~~~~~FG~GT~LtVlg~p  113 (114)
T d2rhea_          87 YYCAAWNDSLDEPGFGGGTKLTVLGQP  113 (114)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEECSCC
T ss_pred             EEEeecCCCCCCCEECCCeEEEECCCc
Confidence            9999864322111   12567776544

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.1e-08  Score=75.27  Aligned_cols=91  Identities=20%  Similarity=0.273  Sum_probs=68.7

Q ss_pred             CCCC-CCCCCCeEEeecCCeEEEEEecCCC-CCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEE
Q psy12425        187 YDKP-SPPGIPVVTQVGGDFVNLSWDKPLD-DGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV  264 (591)
Q Consensus       187 ~~~p-~~~~~~~~~~~~~~~v~l~w~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c  264 (591)
                      ...| .+|..+.+...+.+++.|+|.++.. ..+..+.+|.|.++..+...+............+.|.+|.++..|.|++
T Consensus         8 ~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   87 (119)
T d1x5ha1           8 SDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRV   87 (119)
T ss_dssp             CSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEEC
T ss_pred             CCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCEEEEEE
Confidence            3455 3677788888889999999998742 2234789999999877655444333333456789999999999999999


Q ss_pred             EEEcCCCCCCCCC
Q psy12425        265 YAQNEAGLSLPSS  277 (591)
Q Consensus       265 ~a~n~~g~~~~s~  277 (591)
                      +|.|..|.+..+.
T Consensus        88 ~A~n~~G~G~~S~  100 (119)
T d1x5ha1          88 AALTINGTGPATD  100 (119)
T ss_dssp             EEEETTEEEEECC
T ss_pred             EEEcCCcCCCCCC
Confidence            9999999876554

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4e-08  Score=74.33  Aligned_cols=104  Identities=20%  Similarity=0.187  Sum_probs=71.8

Q ss_pred             CCCCCCCcceEEecCceEEEEecCCCCCCCc--------ceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEE
Q psy12425         89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGL--------KVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYL  160 (591)
Q Consensus        89 p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~--------~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  160 (591)
                      |..+..| .+..+...++.|+|.+|...++.        .+..|.+.+...................+.|.+|.+++.|.
T Consensus        18 ~~~~~~P-~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~P~t~Y~   96 (137)
T d1wk0a_          18 LSNIVKP-VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYH   96 (137)
T ss_dssp             TTCCCCC-EEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESCSEEEECSCCTTCEEC
T ss_pred             CCCCCCC-EEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEEEecCccEEEECCCCCCcEEE
Confidence            3444443 56777899999999988754432        45678888876654433333334567789999999999999


Q ss_pred             EEEEEEccCCCCCCCCccCcccccCCCCCCCCCCCC
Q psy12425        161 FHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIP  196 (591)
Q Consensus       161 ~~~~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~  196 (591)
                      |+|+|.|..|.+..+......+..   .+|.+|..+
T Consensus        97 f~V~A~n~~G~g~~S~~~~~~T~~---~~P~~p~~p  129 (137)
T d1wk0a_          97 AKVQAEYNSIKGTPSEAEIFTTLS---CEPDIPNPP  129 (137)
T ss_dssp             EEEEEEETTEECCCCCCCCEECCC---SSSCCCSCS
T ss_pred             EEEEEEcCCcccCCCCCEEEECCC---CCCCCCCCC
Confidence            999999999998887655444433   344444333

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.6e-08  Score=69.75  Aligned_cols=87  Identities=28%  Similarity=0.379  Sum_probs=70.6

Q ss_pred             CCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCC-----CccEEEEeeecCCceeeecCcccCCcEEEE
Q psy12425        189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGS-----DAWQRVNVAICAPSQINIPNLIEGRQYEFR  263 (591)
Q Consensus       189 ~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~  263 (591)
                      +|.+|..+.+.....+++.|+|.+|...+ ..+.+|.++++....     ..|............++|.+|.++..|.|+
T Consensus         2 ~P~~P~~~~~~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   80 (103)
T d1qg3a2           2 VPSEPGRLAFNVVSSTVTQLSWAEPAETN-GEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT   80 (103)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCS-SCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEEE
T ss_pred             cCccCCCcEEEEecCCEEEEEEEECccCC-CCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEEE
Confidence            67889999999999999999999886554 488999999876543     234555444456678999999999999999


Q ss_pred             EEEEcCCCCCCCC
Q psy12425        264 VYAQNEAGLSLPS  276 (591)
Q Consensus       264 c~a~n~~g~~~~s  276 (591)
                      ++|.|..|.+..+
T Consensus        81 V~A~n~~G~g~~s   93 (103)
T d1qg3a2          81 VKARNGAGWGPER   93 (103)
T ss_dssp             EEEEETTEECCCE
T ss_pred             EEEEcCCccCCCc
Confidence            9999999987644

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.74  E-value=2.3e-08  Score=72.20  Aligned_cols=73  Identities=19%  Similarity=0.383  Sum_probs=54.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEE---e---------ecCCceeEEE--eCCeEEEEEcccCCCCceE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRV---V---------QSDDRFKFTV--LDDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~   65 (591)
                      |..+.+.+|++|+|.|.+.+.....+.|||-  |+.   +         ....++....  .....+|.|.+++++|+|.
T Consensus         7 P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~   86 (113)
T d2bnqd1           7 PAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSAT   86 (113)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcE
Confidence            7889999999999999998766678999982  211   1         1123333332  3445799999999999999


Q ss_pred             EEEEEEcCC
Q psy12425         66 YTVNLSNSS   74 (591)
Q Consensus        66 Y~c~~~n~~   74 (591)
                      |.|.+....
T Consensus        87 YyCa~~~~~   95 (113)
T d2bnqd1          87 YLCAVRPTS   95 (113)
T ss_dssp             EEEEEEESS
T ss_pred             EeEeEecCC
Confidence            999987544

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=4.5e-08  Score=69.93  Aligned_cols=94  Identities=15%  Similarity=0.123  Sum_probs=69.0

Q ss_pred             CCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeec-CCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcC
Q psy12425        191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEV-GSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNE  269 (591)
Q Consensus       191 ~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~  269 (591)
                      ..|..+.+...+.+++.|+|.++...+ ..+..|.|.++.. +...|............+.|.+|.++..|.|+++|.|.
T Consensus         8 ~~P~~p~~~~~~~~~v~l~W~pp~~~~-~~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~   86 (105)
T d2d9qb2           8 TMDPSPEAAPPQAGCLQLSWEPWQPGL-HINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRW   86 (105)
T ss_dssp             ECCC-------CCSCEEEEEECCGGGT-TSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEEC
T ss_pred             CCCCCCEeecCCCCeEEEEEcCCCCCC-ceeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEEeC
Confidence            455566777778899999999876554 4678899999865 45567776666556678999999999999999999999


Q ss_pred             CCCCCCCCCcceEEEc
Q psy12425        270 AGLSLPSSASNSVQIK  285 (591)
Q Consensus       270 ~g~~~~s~~~~~~~~~  285 (591)
                      .|.+.+|..+..+.+.
T Consensus        87 ~g~G~~S~wS~~~~~~  102 (105)
T d2d9qb2          87 PLPGHWSDWSPSLELR  102 (105)
T ss_dssp             SSCCCCCCCCCCEEEC
T ss_pred             CCCCCCcCCCCCEEEe
Confidence            9998877776665543

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=6.1e-08  Score=71.27  Aligned_cols=90  Identities=19%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEE----EecCCCceEEEEeecCcceEEEcCCcCCcEEEEEE
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVER----RDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV  163 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~  163 (591)
                      +|..|.. +.+..+...++.|.|.+|..+++..+..|.+++    .+.....|..+.. .....+.+.+|.+++.|.|+|
T Consensus        15 pp~~P~~-p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~-~~~~~~~v~~L~p~t~Y~frV   92 (120)
T d1wfua_          15 PLSKPHP-PVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT-GYATRHVVEGLEPRTLYKFRL   92 (120)
T ss_dssp             CCCCCCC-CBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEE-ESCSEEEEESCCTTCEEEEEE
T ss_pred             CCCcCCC-CEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeecc-ccccEEeCCCCCCCcEeeEEE
Confidence            4555554 356677889999999998877776666555444    4455556766554 356789999999999999999


Q ss_pred             EEEccCCCCCCCCccC
Q psy12425        164 MAVNENGMGPPLEGIN  179 (591)
Q Consensus       164 ~a~n~~g~~~~~~~~~  179 (591)
                      +|.|..|.+..+....
T Consensus        93 ~A~n~~G~s~~S~~~~  108 (120)
T d1wfua_          93 KVTSPSGEYEYSPVVS  108 (120)
T ss_dssp             EEECSSSCEEECCCEE
T ss_pred             EEEeCCcEeCCCCCEE
Confidence            9999999887765433

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.72  E-value=7.4e-08  Score=68.71  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=53.9

Q ss_pred             CceeeeecCCeEEEEEEeccC----CCceEEEEEC--CEE----e--------ecCCceeEEEeCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD----QPMEVSLTKN--GRV----V--------QSDDRFKFTVLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~----p~~~v~W~~~--~~~----~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++|+|.|...+.    ....+.|||-  |+.    +        ....++.....+....|+|.+++++|+
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDA   87 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCC
Confidence            778999999999999988542    1234899883  211    1        112466666677788999999999999


Q ss_pred             eEEEEEEEcC
Q psy12425         64 GDYTVNLSNS   73 (591)
Q Consensus        64 g~Y~c~~~n~   73 (591)
                      +.|.|.+...
T Consensus        88 A~YyCa~~~~   97 (111)
T d2gsia1          88 ATYYCSHIRE   97 (111)
T ss_dssp             EEEEEEECSS
T ss_pred             ceEEEEECCC
Confidence            9999987644

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.8e-08  Score=70.59  Aligned_cols=92  Identities=20%  Similarity=0.106  Sum_probs=60.5

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCc--ceeeEEEEEEecCCCceEEEEe---ecCcceEEEcCCcCCcEEEEE
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGL--KVTHYVVERRDISMPHWICIST---TCHDTTFIVQGLTEGQEYLFH  162 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~--~~~~y~~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~~~  162 (591)
                      +|.+|.. +.+......++.|+|.+|...++.  ....|.+++.......|.....   ......+.+.+|.+++.|.|+
T Consensus         1 kP~~P~~-l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   79 (101)
T d1iarb2           1 KPRAPGN-LTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRAR   79 (101)
T ss_dssp             CCCCCEE-EEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEE
T ss_pred             CcccCCc-CEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEE
Confidence            4667765 667777888999999987644433  3345999998877766654432   333467888899999999999


Q ss_pred             EEEEccCCCCCCCCccCc
Q psy12425        163 VMAVNENGMGPPLEGINP  180 (591)
Q Consensus       163 ~~a~n~~g~~~~~~~~~~  180 (591)
                      |+|.|..|.+..++.+..
T Consensus        80 VrA~~~~g~g~wSewS~~   97 (101)
T d1iarb2          80 VRAWAQAYNTTWSEWSPS   97 (101)
T ss_dssp             EEEECGGGTCCCCCCCCC
T ss_pred             EEEEcCCCCCCCcCCCCC
Confidence            999999999888766543

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.70  E-value=9e-08  Score=68.71  Aligned_cols=73  Identities=21%  Similarity=0.245  Sum_probs=54.9

Q ss_pred             CceeeeecCCeEEEEEEeccC---CCceEEEEEC--CE---Ee---------ecCCceeEEEeCCeEEEEEcccCCCCce
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD---QPMEVSLTKN--GR---VV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAG   64 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~---p~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g   64 (591)
                      |..+.+.+|++|+|.|...+.   ....+.|||-  |+   .+         ....++......+...|.|.+++++|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            678999999999999998763   2345899982  21   11         1124555666677789999999999999


Q ss_pred             EEEEEEEcCC
Q psy12425         65 DYTVNLSNSS   74 (591)
Q Consensus        65 ~Y~c~~~n~~   74 (591)
                      .|.|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999887544

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.70  E-value=2.9e-08  Score=71.79  Aligned_cols=72  Identities=22%  Similarity=0.311  Sum_probs=53.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECC--E---E-e--------ecCCceeEEE--eCCeEEEEEcccCCCCceE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--R---V-V--------QSDDRFKFTV--LDDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--~---~-~--------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~   65 (591)
                      |..+.+.+|++|+|.|.........+.|||-.  .   . +        ....++....  .....+|+|.+++++|+|.
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~   86 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSAS   86 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSE
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcc
Confidence            78899999999999999977666789999732  1   1 1        1113333322  2345789999999999999


Q ss_pred             EEEEEEcC
Q psy12425         66 YTVNLSNS   73 (591)
Q Consensus        66 Y~c~~~n~   73 (591)
                      |.|.+...
T Consensus        87 Y~Ca~~~~   94 (114)
T d2cdea1          87 YICVVSDR   94 (114)
T ss_dssp             EEEEEECS
T ss_pred             cceeeecC
Confidence            99999764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.70  E-value=4.6e-08  Score=69.74  Aligned_cols=72  Identities=14%  Similarity=0.202  Sum_probs=54.6

Q ss_pred             CceeeeecCCeEEEEEEeccC-CCceEEEEEC--CE---Ee---------ecCCceeEEEeCCeEEEEEcccCCCCceEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD-QPMEVSLTKN--GR---VV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDY   66 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y   66 (591)
                      |..+.+.+|++++|.|.+... ....+.|||-  |+   .|         ....++.....++...|.|.+++++|+|.|
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~Y   87 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVY   87 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEE
Confidence            788999999999999998654 3456889983  21   11         112455666667778999999999999999


Q ss_pred             EEEEEcC
Q psy12425         67 TVNLSNS   73 (591)
Q Consensus        67 ~c~~~n~   73 (591)
                      .|.+.+.
T Consensus        88 yCa~~~~   94 (108)
T d2fx7l1          88 YCQQYGQ   94 (108)
T ss_dssp             EEEECSS
T ss_pred             eeecCCC
Confidence            9987543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.69  E-value=1.8e-08  Score=71.45  Aligned_cols=71  Identities=15%  Similarity=0.122  Sum_probs=54.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEE---e---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRV---V---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  |+.   |         ....++.....++..+|.|.+++++|+|.|.
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYF   87 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEE
Confidence            7788999999999999987766667999973  211   1         1124555566677789999999999999999


Q ss_pred             EEEEc
Q psy12425         68 VNLSN   72 (591)
Q Consensus        68 c~~~n   72 (591)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d3cx5k1          88 CQHHI   92 (107)
T ss_dssp             EEECS
T ss_pred             eeeCC
Confidence            97653

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.69  E-value=3.2e-08  Score=70.87  Aligned_cols=72  Identities=11%  Similarity=0.050  Sum_probs=51.3

Q ss_pred             CceeeeecCCeEEEEEEeccC-CCceEEEEEC--CEE---e---------ecCCceeEEEeCCeEEEEEcccCCCCceEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD-QPMEVSLTKN--GRV---V---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDY   66 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y   66 (591)
                      |..+.+.+|++|+|.|.+.+. ....+.|||.  |+.   |         ....++.+........|.|.+++++|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            678999999999999998653 3456899982  211   1         111222233344568899999999999999


Q ss_pred             EEEEEcC
Q psy12425         67 TVNLSNS   73 (591)
Q Consensus        67 ~c~~~n~   73 (591)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9988643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=8.8e-08  Score=67.86  Aligned_cols=72  Identities=15%  Similarity=0.152  Sum_probs=54.1

Q ss_pred             CceeeeecCCeEEEEEEeccCC---CceEEEEE---CCEE--e---------ecCCceeEEEeCCeEEEEEcccCCCCce
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ---PMEVSLTK---NGRV--V---------QSDDRFKFTVLDDYIIIFIKEIRKEDAG   64 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p---~~~v~W~~---~~~~--~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g   64 (591)
                      |..+.|.+|++++|.|...+..   ...+.|||   +..+  |         ....|+.....++...|.|.+++++|+|
T Consensus         7 ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa   86 (110)
T d1oaql_           7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEA   86 (110)
T ss_dssp             CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccE
Confidence            4578899999999999997532   23488997   2221  1         1125666677778899999999999999


Q ss_pred             EEEEEEEcC
Q psy12425         65 DYTVNLSNS   73 (591)
Q Consensus        65 ~Y~c~~~n~   73 (591)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (110)
T d1oaql_          87 IYFCALWYS   95 (110)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEcccC
Confidence            999998654

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.69  E-value=4.8e-08  Score=69.36  Aligned_cols=71  Identities=15%  Similarity=0.184  Sum_probs=55.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  ++   .|         ....++.....+....|.|.+++++|+|.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Yy   87 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYY   87 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEE
Confidence            7889999999999999987655667999982  21   11         1124555566677789999999999999999


Q ss_pred             EEEEc
Q psy12425         68 VNLSN   72 (591)
Q Consensus        68 c~~~n   72 (591)
                      |.+..
T Consensus        88 CA~~~   92 (109)
T d1mqkl_          88 CQHHY   92 (109)
T ss_dssp             EEECS
T ss_pred             EeeeC
Confidence            98763

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=98.68  E-value=6.1e-08  Score=66.35  Aligned_cols=79  Identities=28%  Similarity=0.382  Sum_probs=59.4

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVN  167 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n  167 (591)
                      +|.+|.. +.+......++.|+|.+|..++  .+..|.+.+...   .    ........+.+.+|.+++.|.|+|+|.|
T Consensus         3 AP~~P~~-l~~~~~~~~sv~lsW~~p~~~~--~i~~Y~i~~~~~---~----~~~~~~t~~~~~~L~p~t~Y~~~V~A~n   72 (88)
T d1k85a_           3 APTAPTN-LASTAQTTSSITLSWTASTDNV--GVTGYDVYNGTA---L----ATTVTGTTATISGLAADTSYTFTVKAKD   72 (88)
T ss_dssp             SCCCCEE-EEEEEECSSCEEEEEECCSCCS--SEEEEEEEESSS---E----EEEESSSEEEECCCCSSCEEEEEEEEEE
T ss_pred             CcCCCCC-cEEEEecCCEEEEEEeCCCCCC--CEEEEEEEccce---E----EEecCCCEEEECCCCCCCEEEEEEEEEE
Confidence            4666665 6777788999999999876432  477898875321   1    1234568899999999999999999999


Q ss_pred             cCC-CCCCCC
Q psy12425        168 ENG-MGPPLE  176 (591)
Q Consensus       168 ~~g-~~~~~~  176 (591)
                      ..| .+..+.
T Consensus        73 ~~G~~s~~S~   82 (88)
T d1k85a_          73 AAGNVSAASN   82 (88)
T ss_dssp             TTTEECCCCC
T ss_pred             CCCCcCCCCc
Confidence            998 455543

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.8e-08  Score=66.31  Aligned_cols=80  Identities=21%  Similarity=0.380  Sum_probs=67.4

Q ss_pred             CCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCC
Q psy12425         91 PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG  170 (591)
Q Consensus        91 ~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g  170 (591)
                      +|.. +.+......++.|+|.+|.    ..+..|.+.+....+..+...........+.+.+|.+++.|.|++.|.|..|
T Consensus         4 pP~~-l~v~~~~~~si~v~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   78 (90)
T d1fnha2           4 PPRR-ARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA   78 (90)
T ss_dssp             CCEE-EEEEEECSSEEEEEEECCS----SCCCCEEEEEEESSSSCCEEEECCTTCSEEEEESCCTTCEEEEEEEEEETTE
T ss_pred             cCCC-CEEEEecCCEEEEEEECCC----CCCceeEEEEEEccCCceEEEecCCCccEEEeCCCCCCcEEEEEEEEEeCCC
Confidence            4444 6788889999999999775    3678899999988877777777777889999999999999999999999988


Q ss_pred             CCCCC
Q psy12425        171 MGPPL  175 (591)
Q Consensus       171 ~~~~~  175 (591)
                      .+.+.
T Consensus        79 ~s~p~   83 (90)
T d1fnha2          79 RSSPV   83 (90)
T ss_dssp             ECCCE
T ss_pred             CcCCE
Confidence            76543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.68  E-value=7.5e-08  Score=68.65  Aligned_cols=72  Identities=15%  Similarity=0.255  Sum_probs=54.9

Q ss_pred             CceeeeecCCeEEEEEEeccC--CCceEEEEEC------CEEeecCCceeEEEe--CCeEEEEEcccCCCCceEEEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD--QPMEVSLTKN------GRVVQSDDRFKFTVL--DDYIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~------~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      |..+.+.+|++++|.|.+.+.  ....+.|||.      ...+....++.....  ....+|+|.+++++|+|.|.|.+.
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   85 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLG   85 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEe
Confidence            778999999999999998653  4567999982      234444555554433  345799999999999999999876


Q ss_pred             cC
Q psy12425         72 NS   73 (591)
Q Consensus        72 n~   73 (591)
                      ..
T Consensus        86 ~~   87 (112)
T d1sq2n_          86 VA   87 (112)
T ss_dssp             BT
T ss_pred             cC
Confidence            54

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.68  E-value=1.1e-07  Score=68.40  Aligned_cols=84  Identities=20%  Similarity=0.242  Sum_probs=57.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEE------------eecCCceeEEE--eCCeEEEEEcccCCCCceE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRV------------VQSDDRFKFTV--LDDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~------------~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~   65 (591)
                      |..+.+.+|++++|.|...+. ...+.|||-  |..            .....++.+..  .....+|.|.+++++|+|.
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL   85 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence            778999999999999998753 447899982  110            11123333332  3456899999999999999


Q ss_pred             EEEEEEcCCeeeE--EEEEEEEe
Q psy12425         66 YTVNLSNSSGSVS--GTFTINIT   86 (591)
Q Consensus        66 Y~c~~~n~~g~~~--~~~~l~v~   86 (591)
                      |.|.+....+...  .-..|+|.
T Consensus        86 YyCa~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          86 YLCAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             EEEEEECTTSSEEECCCEEEEEE
T ss_pred             EcccccCCCCCcEECCCEEEEEe
Confidence            9998875543321  12556665

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2e-07  Score=64.35  Aligned_cols=80  Identities=26%  Similarity=0.271  Sum_probs=64.6

Q ss_pred             CCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCC
Q psy12425        195 IPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSL  274 (591)
Q Consensus       195 ~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~  274 (591)
                      ++.+.....+++.|+|.+|.    ..+.+|.+.+...+...+...........++.|.+|.++..|.+++.|.+..|.+.
T Consensus         2 nl~v~~~t~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s~   77 (91)
T d1fnaa_           2 DLEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSP   77 (91)
T ss_dssp             CCEEEEECSSCEEEECCCCS----SCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCSS
T ss_pred             CCEEEEeCCCEEEEEEEccc----eEecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCccCC
Confidence            46677888999999999862    35789999998877666655544455678999999999999999999999999876


Q ss_pred             CCCC
Q psy12425        275 PSSA  278 (591)
Q Consensus       275 ~s~~  278 (591)
                      .+..
T Consensus        78 ~~s~   81 (91)
T d1fnaa_          78 ASSK   81 (91)
T ss_dssp             CSCC
T ss_pred             CcCC
Confidence            6543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.9e-08  Score=67.89  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=55.4

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee--EEEEEE
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV--SGTFTI   83 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~--~~~~~l   83 (591)
                      .|..|++|+|.|... .+...+.|+|+|........ .....++...+.|.+++.+|+|.|+|...+..+..  +..+.|
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL   91 (95)
T d1olla1          14 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL   91 (95)
T ss_dssp             EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred             cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEE
Confidence            377899999999975 55778999999865432211 00012344689999999999999999988765533  333666


Q ss_pred             EEe
Q psy12425         84 NIT   86 (591)
Q Consensus        84 ~v~   86 (591)
                      .|.
T Consensus        92 ~VT   94 (95)
T d1olla1          92 VVT   94 (95)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            664

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.67  E-value=1.3e-07  Score=67.80  Aligned_cols=71  Identities=15%  Similarity=0.166  Sum_probs=52.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee---------ecCCceeEEE--eCCeEEEEEcccCCCCceE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV---------QSDDRFKFTV--LDDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~   65 (591)
                      |..+.+.+|++++|.|...+.....+.||+-  |+   .+         ....++....  .....+|.|.+++++|+|.
T Consensus         7 p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAV   86 (111)
T ss_dssp             CSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEE
Confidence            6789999999999999987666667899882  21   11         1123343332  3456899999999999999


Q ss_pred             EEEEEEc
Q psy12425         66 YTVNLSN   72 (591)
Q Consensus        66 Y~c~~~n   72 (591)
                      |.|.+..
T Consensus        87 YyCa~~~   93 (111)
T d1bd2d1          87 YFCAAME   93 (111)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9998864

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.6e-08  Score=71.14  Aligned_cols=72  Identities=17%  Similarity=0.181  Sum_probs=54.4

Q ss_pred             CceeeeecCCeEEEEEEeccC-CCceEEEEECC----E-E---e------------ecCCceeEEEeCCeEEEEEcccCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD-QPMEVSLTKNG----R-V---V------------QSDDRFKFTVLDDYIIIFIKEIRK   60 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~-p~~~v~W~~~~----~-~---~------------~~~~~~~~~~~~~~~~l~i~~~~~   60 (591)
                      |..+++.+|++|+|.|.+.+. ....+.|+|-.    . .   +            ....++.....++...|.|.++++
T Consensus         7 P~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~   86 (114)
T d1akjd_           7 PLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRR   86 (114)
T ss_dssp             CCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCG
T ss_pred             CCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCC
Confidence            788999999999999998653 34568999821    1 0   1            012355566667778999999999


Q ss_pred             CCceEEEEEEEcC
Q psy12425         61 EDAGDYTVNLSNS   73 (591)
Q Consensus        61 ~d~g~Y~c~~~n~   73 (591)
                      +|+|.|.|.+...
T Consensus        87 ~Dsg~YyCa~~~~   99 (114)
T d1akjd_          87 ENEGYYFCSALSN   99 (114)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CCCEEEeEeEcCC
Confidence            9999999998643

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=5.9e-08  Score=71.38  Aligned_cols=85  Identities=12%  Similarity=0.170  Sum_probs=55.7

Q ss_pred             CceeeeecCCeEEEEEEecc----CCCceEEEEECC------EEe---------e-cC----CceeEEE--eCCeEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAG----DQPMEVSLTKNG------RVV---------Q-SD----DRFKFTV--LDDYIIIFI   55 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~----~p~~~v~W~~~~------~~~---------~-~~----~~~~~~~--~~~~~~l~i   55 (591)
                      |.++.+..|++|+|.|.+..    .....+.|+|..      ..+         . ..    +|..+..  ..+..+|.|
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEE
Confidence            78899999999999999753    234589998721      111         1 11    2223221  223468999


Q ss_pred             cccCCCCceEEEEEEEcCCee--eEEEEEEEEe
Q psy12425         56 KEIRKEDAGDYTVNLSNSSGS--VSGTFTINIT   86 (591)
Q Consensus        56 ~~~~~~d~g~Y~c~~~n~~g~--~~~~~~l~v~   86 (591)
                      .+++.+|+|.|.|.+.+..+.  ....+.|.|.
T Consensus        86 ~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          86 HNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             CCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            999999999999999876432  3445777765

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.4e-07  Score=65.51  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=65.1

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEc
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVN  167 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n  167 (591)
                      .|.+|.+ +.+......++.|+|.+|.   ...+..|.+++.......|..... .....+.+.+|.+++.|.|+|+|.+
T Consensus         2 ~P~~P~n-l~v~~~~~~~v~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~-~~~~~~~~~~L~p~t~Y~frVRa~~   76 (95)
T d2b5ic1           2 IPWAPEN-LTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSV-DYRHKFSLPSVDGQKRYTFRVRSRF   76 (95)
T ss_dssp             ECCCCEE-EEEEEEETTEEEEEEECSS---CSTTCEEEEEEEETTCSSCEEEEE-CSSCEEEECSCCTTSCEEEEEEEEC
T ss_pred             CCcCCCC-CEEEEEeCCEEEEEECCCC---CceeEEEEEEEEcCCCceeeEeee-cccceeEcCCCCCCCEEEEEEEEee
Confidence            4777776 7788889999999999876   235667999999998888877554 4667899999999999999999987


Q ss_pred             cCCCC
Q psy12425        168 ENGMG  172 (591)
Q Consensus       168 ~~g~~  172 (591)
                      ..+.+
T Consensus        77 ~~~~~   81 (95)
T d2b5ic1          77 NPLCG   81 (95)
T ss_dssp             CSSSC
T ss_pred             CCCCC
Confidence            66543

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.2e-07  Score=67.71  Aligned_cols=93  Identities=20%  Similarity=0.208  Sum_probs=67.5

Q ss_pred             ccccCCCCCCCCCCCCeEEeecCCeEEEEEecCC-CCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCc
Q psy12425        181 IKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPL-DDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQ  259 (591)
Q Consensus       181 ~~~~~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  259 (591)
                      +.+.+...+|..|....+.......+.|+|.++. ...+..+.+|.|+++..+...|.....    ...+.+.+|.++..
T Consensus         9 v~v~T~~~~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~~----~~~~~~~~L~p~t~   84 (117)
T d1wj3a_           9 VNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNT----NKTSAELVLPIKED   84 (117)
T ss_dssp             CCCCCSCCCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEEE----SSSEEEEECCCSSC
T ss_pred             EEEEcCCCCcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeeec----eeeEEEeeccCCcE
Confidence            3333444566655555556677899999999753 333458999999998877666654432    35567789999999


Q ss_pred             EEEEEEEEcCCCCCCCCC
Q psy12425        260 YEFRVYAQNEAGLSLPSS  277 (591)
Q Consensus       260 ~~y~c~a~n~~g~~~~s~  277 (591)
                      |.|+++|.|..|.+..+.
T Consensus        85 Y~~~V~A~n~~G~G~~S~  102 (117)
T d1wj3a_          85 YIIEVKATTDGGDGTSSE  102 (117)
T ss_dssp             EEEEEEEEESSCCCCBCC
T ss_pred             EEEEEEEEcCCccCCCCC
Confidence            999999999999887653

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=1.8e-07  Score=66.53  Aligned_cols=87  Identities=25%  Similarity=0.389  Sum_probs=64.5

Q ss_pred             CCCCCCCCcce----EEecCceEEEEecCCCC---CCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEE
Q psy12425         88 LPGPPIGPLDV----SEITKHTCTLHWNPPKY---DGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYL  160 (591)
Q Consensus        88 ~p~~p~~~~~~----~~~~~~~~~l~w~~p~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  160 (591)
                      +|.+|.+ +.+    ......++.|+|.+|..   ..+..+..|.++++..+...|..... .....+.+.+|.+++.|.
T Consensus         2 kP~pP~n-l~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~   79 (103)
T d1f6fb2           2 EPEPPRN-LTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFT-GHQTQFKVFDLYPGQKYL   79 (103)
T ss_dssp             CCCCCEE-EEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEE-ETCSEEEECCCCTTCEEE
T ss_pred             CCCCCCC-CEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeecc-cceeEEEeCCCCcceEEE
Confidence            4666664 233    23356779999998863   33446678999999998888876544 467789999999999999


Q ss_pred             EEEEEEccCCC-CCCCC
Q psy12425        161 FHVMAVNENGM-GPPLE  176 (591)
Q Consensus       161 ~~~~a~n~~g~-~~~~~  176 (591)
                      |+|+|.+..|. +..+.
T Consensus        80 ~rVra~~~~G~wS~wS~   96 (103)
T d1f6fb2          80 VQTRCKPDHGYWSRWSQ   96 (103)
T ss_dssp             EEEEEEESSSCCCCCCC
T ss_pred             EEEEEEeCCCCCCCCcC
Confidence            99999998885 55543

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.9e-08  Score=70.58  Aligned_cols=87  Identities=20%  Similarity=0.262  Sum_probs=69.2

Q ss_pred             CCCCCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEE
Q psy12425        185 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRV  264 (591)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c  264 (591)
                      +...+|.+|..+.+.....+++.|+|.+|.   ...+.+|.+.++..+...+.....  .....+.|.+|.++..|.|++
T Consensus         6 T~~~vP~~P~~~~~~~~~~~si~l~W~~p~---~~~i~~Y~i~y~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V   80 (102)
T d1x5za1           6 TQTGVPGQPLNFKAEPESETSILLSWTPPR---SDTIANYELVYKDGEHGEEQRITI--EPGTSYRLQGLKPNSLYYFRL   80 (102)
T ss_dssp             CCSCCCCCCEEEEEECSSSSEEEEEEECCS---CCCCCEEEECBEESSSCCCBCCEE--CSSSEEEEECCCTTCEEEECE
T ss_pred             CCCCCCcCCCCeEEEEccCCEEEEEEECCC---CCCccceEEEEEeCCCCceEEEEc--CCcCEEEECCCCCCCEEEEEE
Confidence            445578888888888888999999999874   236889999998876655544432  355789999999999999999


Q ss_pred             EEEcCCCCCCCC
Q psy12425        265 YAQNEAGLSLPS  276 (591)
Q Consensus       265 ~a~n~~g~~~~s  276 (591)
                      .|.|..|.+..+
T Consensus        81 ~A~n~~G~g~~S   92 (102)
T d1x5za1          81 AARSPQGLGAST   92 (102)
T ss_dssp             EEECSSCEEEEC
T ss_pred             EEEcCCCEeCCC
Confidence            999999977654

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=7.5e-08  Score=66.13  Aligned_cols=71  Identities=17%  Similarity=0.429  Sum_probs=58.4

Q ss_pred             cCceEEEEecCCCCCCCcceeeEEEEEEecCCC-ceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCC
Q psy12425        102 TKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP-HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPL  175 (591)
Q Consensus       102 ~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~  175 (591)
                      ..+++.|+|.+|.   +..+.+|.++++..++. .|...........+.|.+|.|++.|.|++.|.|..|.+...
T Consensus        14 ~~~s~~vsW~~P~---~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~~~G~s~~~   85 (93)
T d1owwa_          14 QPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVT   85 (93)
T ss_dssp             CTTCEEEEEECCS---SSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEESSSCEEEE
T ss_pred             CCCEEEEEeeccc---ccceeEEEEEEeeccccceeeeeccCCCccEEEECCcccCcEEEEEEEEEeCCCccCcE
Confidence            3479999999886   45799999999986544 45666556678899999999999999999999999976554

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3.1e-07  Score=65.46  Aligned_cols=97  Identities=18%  Similarity=0.098  Sum_probs=72.2

Q ss_pred             CCCCCCCCeEEeec-CCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEE
Q psy12425        189 KPSPPGIPVVTQVG-GDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ  267 (591)
Q Consensus       189 ~p~~~~~~~~~~~~-~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~  267 (591)
                      .|.||.++.+.... ...+.|+|..|..........|.++++..+...+............+.|.+|.++..|.|+++|+
T Consensus         4 k~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRar   83 (105)
T d1erna2           4 LLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRAR   83 (105)
T ss_dssp             CCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             ccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEEEE
Confidence            56778777776654 45699999998777677888999999988766555554444556789999999999999999998


Q ss_pred             cC--CCCCCCCCCcceEEEc
Q psy12425        268 NE--AGLSLPSSASNSVQIK  285 (591)
Q Consensus       268 n~--~g~~~~s~~~~~~~~~  285 (591)
                      +.  .+.+.+|+-+..+.+.
T Consensus        84 ~~~~~~~G~WSeWS~~v~~~  103 (105)
T d1erna2          84 MAEPSFGGFWSAWSEPVSLL  103 (105)
T ss_dssp             ECSSSCCBCCCCCCCCEEEE
T ss_pred             ECCCCCCCCCCCCCCCEEee
Confidence            54  3456667766666554

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.6e-08  Score=66.58  Aligned_cols=79  Identities=22%  Similarity=0.295  Sum_probs=64.6

Q ss_pred             CCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCC
Q psy12425        192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAG  271 (591)
Q Consensus       192 ~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g  271 (591)
                      +|..+.+...+.+++.|+|.+|.    ..+.+|.+.+.......|............+.|.+|.++..|.|++.|.|..|
T Consensus         3 ~P~~l~v~~vt~~sv~l~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   78 (89)
T d1fnfa3           3 SPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGRE   78 (89)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTE
T ss_pred             cCcCCEEEEecCCEEEEEEEeCC----CEEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcCCc
Confidence            56678888889999999999862    35788999998877666655544455678999999999999999999999888


Q ss_pred             CCC
Q psy12425        272 LSL  274 (591)
Q Consensus       272 ~~~  274 (591)
                      .+.
T Consensus        79 ~s~   81 (89)
T d1fnfa3          79 ESP   81 (89)
T ss_dssp             ECC
T ss_pred             CcC
Confidence            654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.65  E-value=1.2e-07  Score=67.89  Aligned_cols=72  Identities=19%  Similarity=0.249  Sum_probs=54.3

Q ss_pred             CceeeeecCCeEEEEEEeccC--CCceEEEEEC--C---EEe---------ecCCceeEEEeCCeEEEEEcccCCCCceE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD--QPMEVSLTKN--G---RVV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~--~---~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~   65 (591)
                      |..+.+.+|++++|.|...+.  ....+.|||-  +   +.|         ....++.....+...+|.|.+++++|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            557999999999999998653  2456999973  1   111         11245666667777899999999999999


Q ss_pred             EEEEEEcC
Q psy12425         66 YTVNLSNS   73 (591)
Q Consensus        66 Y~c~~~n~   73 (591)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99988643

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.65  E-value=2.6e-08  Score=72.03  Aligned_cols=72  Identities=11%  Similarity=0.072  Sum_probs=52.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee---------ecCCceeEEE--eCCeEEEEEcccCCCCceE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV---------QSDDRFKFTV--LDDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~   65 (591)
                      |..+.+.+|++|+|.|.........+.|||.  |+   .|         ....++.+..  ......|.|.+++++|+|.
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSAL   87 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCcc
Confidence            6678999999999999997766778999983  21   11         1122333322  2234679999999999999


Q ss_pred             EEEEEEcC
Q psy12425         66 YTVNLSNS   73 (591)
Q Consensus        66 Y~c~~~n~   73 (591)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (115)
T d1lp9e1          88 YYCALFLA   95 (115)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEcC
Confidence            99988654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.65  E-value=9.5e-08  Score=67.55  Aligned_cols=72  Identities=17%  Similarity=0.259  Sum_probs=54.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  |+   .|         ....++.....+....|.|.+++++|++.|.
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYy   86 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYY   86 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEE
Confidence            5578999999999999976544557999973  21   11         1124555666777889999999999999999


Q ss_pred             EEEEcC
Q psy12425         68 VNLSNS   73 (591)
Q Consensus        68 c~~~n~   73 (591)
                      |.+...
T Consensus        87 CA~~~~   92 (109)
T d1w72l1          87 CQVWDS   92 (109)
T ss_dssp             EEEEET
T ss_pred             EEecCC
Confidence            998654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.2e-08  Score=70.20  Aligned_cols=79  Identities=14%  Similarity=0.067  Sum_probs=52.9

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCEEeecCC-ceeEEEeCCeEEEEEcccCCCCceEEEEEEEcCCeee--EEEEE
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDD-RFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV--SGTFT   82 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~--~~~~~   82 (591)
                      .|..|++|+|.|... .+...+.|+|+|....... +...........+.|.+++..|+|.|+|...+.....  +..+.
T Consensus        17 ~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~   95 (99)
T d1ucta1          17 VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLE   95 (99)
T ss_dssp             EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEE
T ss_pred             ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCCCEE
Confidence            488999999999875 5677999999774221111 1111112233578999999999999999998776533  22255


Q ss_pred             EEE
Q psy12425         83 INI   85 (591)
Q Consensus        83 l~v   85 (591)
                      |.|
T Consensus        96 L~V   98 (99)
T d1ucta1          96 LVV   98 (99)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            555

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.8e-07  Score=67.75  Aligned_cols=76  Identities=28%  Similarity=0.443  Sum_probs=60.7

Q ss_pred             ecCceEEEEecCCCCCCCcceeeEEEEEEecCCC---ceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCCCc
Q psy12425        101 ITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP---HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEG  177 (591)
Q Consensus       101 ~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~~  177 (591)
                      ....++.|+|.+|...+ ..+..|.+.+......   .|...........+.|.+|.+++.|.|+|+|.|..|.+..+..
T Consensus        25 ~~~~sv~v~W~~P~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  103 (111)
T d1x5ka1          25 GKPKTIIVNWQPPSEAN-GKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEA  103 (111)
T ss_dssp             SCTTCEEEEEECCSCCS-SCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCSSSEEEEEEEEECSSCBCCCCCC
T ss_pred             CCCCEEEEEEEccccCC-CceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCCCCCEEEEEEEEEcCCCCcCCCCC
Confidence            35678999999887554 4788999988765433   3555555667778999999999999999999999998887654

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=6.2e-08  Score=66.90  Aligned_cols=81  Identities=21%  Similarity=0.199  Sum_probs=64.9

Q ss_pred             CCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCC
Q psy12425        191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEA  270 (591)
Q Consensus       191 ~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~  270 (591)
                      .+|..+.+.....+++.|+|.+|.    ..+.+|.+.+...+...+............++|.+|.++..|.|++.|.|..
T Consensus         3 d~P~~l~v~~~s~~s~~l~W~~p~----~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   78 (90)
T d1tena_           3 DAPSQIEVKDVTDTTALITWFKPL----AEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGD   78 (90)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCCCcEEEEecCCEEEEEEEeCc----eEeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEeCC
Confidence            467778888889999999999862    3578899999887665544444444577899999999999999999999988


Q ss_pred             CCCCC
Q psy12425        271 GLSLP  275 (591)
Q Consensus       271 g~~~~  275 (591)
                      |.+.+
T Consensus        79 g~s~~   83 (90)
T d1tena_          79 MSSNP   83 (90)
T ss_dssp             EECCC
T ss_pred             CEeCC
Confidence            87653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.63  E-value=7.2e-08  Score=68.91  Aligned_cols=72  Identities=15%  Similarity=0.177  Sum_probs=52.7

Q ss_pred             CceeeeecCCeEEEEEEeccC----CCceEEEEEC--CEE---e---------ecCCceeEEEeCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD----QPMEVSLTKN--GRV---V---------QSDDRFKFTVLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~----p~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++|+|.|.....    ....+.|||-  |+.   |         ....++.....+....|.|.+++++|+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence            778999999999999987532    2334899983  321   1         112345555556778999999999999


Q ss_pred             eEEEEEEEcC
Q psy12425         64 GDYTVNLSNS   73 (591)
Q Consensus        64 g~Y~c~~~n~   73 (591)
                      |.|.|.+.+.
T Consensus        88 a~YyCa~~~~   97 (111)
T d1j05a_          88 ATYYCQQTNE   97 (111)
T ss_dssp             EEEEEEECSS
T ss_pred             ccEEEeecCC
Confidence            9999987654

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.1e-07  Score=68.14  Aligned_cols=73  Identities=19%  Similarity=0.273  Sum_probs=51.0

Q ss_pred             CceeeeecCCeEEEEEEeccC--CCceEEEEECC--EE---e---------ecCCceeEEE--eCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD--QPMEVSLTKNG--RV---V---------QSDDRFKFTV--LDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~   63 (591)
                      |+.+.+.+|++|+|.|.....  ....+.|+|..  ..   |         ....++.+..  .....+|.|.+++++|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            567899999999999998643  23467898732  11   1         1113333332  34558999999999999


Q ss_pred             eEEEEEEEcCC
Q psy12425         64 GDYTVNLSNSS   74 (591)
Q Consensus        64 g~Y~c~~~n~~   74 (591)
                      |.|.|.+....
T Consensus        83 G~Y~C~v~~~~   93 (108)
T d1hkfa_          83 GHYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEEEecCC
Confidence            99999987543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.1e-08  Score=70.20  Aligned_cols=69  Identities=10%  Similarity=0.212  Sum_probs=49.1

Q ss_pred             eeeeecCCeEEEEEEeccCCCceEEEEECCEE--eec--------C--CceeEEE-----eCCeEEEEEcccCCCCceEE
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRV--VQS--------D--DRFKFTV-----LDDYIIIFIKEIRKEDAGDY   66 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~--~~~--------~--~~~~~~~-----~~~~~~l~i~~~~~~d~g~Y   66 (591)
                      .+...+|++|+|.|.........+.|++....  +..        .  ...++..     .....+|.|.+++++|+|.|
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            46789999999999998777889999985421  110        1  0111111     11235799999999999999


Q ss_pred             EEEEEc
Q psy12425         67 TVNLSN   72 (591)
Q Consensus        67 ~c~~~n   72 (591)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999965

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.62  E-value=1.5e-07  Score=67.47  Aligned_cols=71  Identities=17%  Similarity=0.288  Sum_probs=53.7

Q ss_pred             CceeeeecCCeEEEEEEeccC--CCceEEEEEC--C----EEeecCCceeEEEe--CCeEEEEEcccCCCCceEEEEEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD--QPMEVSLTKN--G----RVVQSDDRFKFTVL--DDYIIIFIKEIRKEDAGDYTVNLS   71 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~--~----~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~   71 (591)
                      |..+.+.+|++|+|.|.+.+.  ....+.|||.  +    ..+....++.....  .....|+|.+++++|+|.|.|.+.
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   86 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAF   86 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeee
Confidence            778999999999999999753  4457899972  2    23444456555542  334789999999999999999985


Q ss_pred             c
Q psy12425         72 N   72 (591)
Q Consensus        72 n   72 (591)
                      .
T Consensus        87 ~   87 (113)
T d1vesa_          87 Y   87 (113)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.62  E-value=1.5e-07  Score=66.40  Aligned_cols=70  Identities=13%  Similarity=0.076  Sum_probs=52.6

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECC--E---Ee-------e--cCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--R---VV-------Q--SDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--~---~~-------~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.... ....+.|||-.  .   .+       .  ...++.....+..++|.|.+++++|+|.|.
T Consensus         7 P~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYY   85 (104)
T ss_dssp             SSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEE
Confidence            78899999999999999754 34467999832  1   11       1  124555566677789999999999999999


Q ss_pred             EEEEc
Q psy12425         68 VNLSN   72 (591)
Q Consensus        68 c~~~n   72 (591)
                      |.+..
T Consensus        86 Ca~~~   90 (104)
T d1yqvl1          86 CQQWG   90 (104)
T ss_dssp             EEECS
T ss_pred             EEecC
Confidence            97643

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.61  E-value=5.2e-08  Score=70.13  Aligned_cols=71  Identities=18%  Similarity=0.282  Sum_probs=51.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEE---e---------ecCCceeEE--EeCCeEEEEEcccCCCCceE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRV---V---------QSDDRFKFT--VLDDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~---~---------~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~   65 (591)
                      |..+.+.+|++++|.|.........+.|||-  |+.   +         ....+....  ..++..+|.|.+++++|+|.
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSAT   85 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSE
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCcee
Confidence            7789999999999999987655557899983  211   1         111233333  23456789999999999999


Q ss_pred             EEEEEEc
Q psy12425         66 YTVNLSN   72 (591)
Q Consensus        66 Y~c~~~n   72 (591)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (110)
T d1u3ha1          86 YFCAASA   92 (110)
T ss_dssp             EEECCEE
T ss_pred             EeeeecC
Confidence            9998763

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.61  E-value=2e-07  Score=66.59  Aligned_cols=70  Identities=14%  Similarity=0.156  Sum_probs=52.6

Q ss_pred             CceeeeecCCeEEEEEEeccC-----CCceEEEEEC--CEE---e---------ecCCceeEEEeCCeEEEEEcccCCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD-----QPMEVSLTKN--GRV---V---------QSDDRFKFTVLDDYIIIFIKEIRKED   62 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~-----p~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d   62 (591)
                      |..+.+.+|++|+|.|.+.+.     ....+.||+.  |+.   +         ....++.....+....|.|.+++++|
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~D   87 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAED   87 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccC
Confidence            678999999999999998653     2456899873  211   1         11245666667777899999999999


Q ss_pred             ceEEEEEEE
Q psy12425         63 AGDYTVNLS   71 (591)
Q Consensus        63 ~g~Y~c~~~   71 (591)
                      ++.|.|...
T Consensus        88 sAvYyCa~~   96 (112)
T d1mjul1          88 VGVYYCLQH   96 (112)
T ss_dssp             CEEEEEEEC
T ss_pred             CceEEEEeC
Confidence            999999643

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.1e-07  Score=67.39  Aligned_cols=89  Identities=17%  Similarity=0.239  Sum_probs=67.2

Q ss_pred             CCCCCCcceEEecCceEEEEecCCCCCC---CcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEE
Q psy12425         90 GPPIGPLDVSEITKHTCTLHWNPPKYDG---GLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAV  166 (591)
Q Consensus        90 ~~p~~~~~~~~~~~~~~~l~w~~p~~~~---~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~  166 (591)
                      .+|.. +.+......++.|+|.+|....   ...+..|.+.+...+...+...........+.|.+|.+++.|.|++.|.
T Consensus         3 ~pP~~-v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   81 (100)
T d1x5ja1           3 MPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVT   81 (100)
T ss_dssp             CCCEE-EEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEECCEEEEE
T ss_pred             CCCcC-eEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCCCccEEEECCCCCCCEEEEEEEEE
Confidence            34444 6788889999999999875322   2355678888877665555444445567789999999999999999999


Q ss_pred             ccCCCCCCCCccC
Q psy12425        167 NENGMGPPLEGIN  179 (591)
Q Consensus       167 n~~g~~~~~~~~~  179 (591)
                      |..|.+..+....
T Consensus        82 n~~g~s~~S~~~~   94 (100)
T d1x5ja1          82 KGRRSSTWSMTAH   94 (100)
T ss_dssp             CSSCBCCCCCCCC
T ss_pred             eCCcCcCCCCeEE
Confidence            9999988876543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.61  E-value=2.1e-07  Score=66.31  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=52.4

Q ss_pred             CceeeeecCCeEEEEEEeccCC-----CceEEEEEC--CEE---e---------ecCCceeEEEeCCeEEEEEcccCCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ-----PMEVSLTKN--GRV---V---------QSDDRFKFTVLDDYIIIFIKEIRKED   62 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p-----~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d   62 (591)
                      |..+.+.+|++|+|.|++.+..     ...+.||+-  |+.   |         ....++.....++...|.|.+++++|
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD   87 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED   87 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence            7789999999999999975422     345889873  211   1         11245655666777899999999999


Q ss_pred             ceEEEEEEEc
Q psy12425         63 AGDYTVNLSN   72 (591)
Q Consensus        63 ~g~Y~c~~~n   72 (591)
                      ++.|.|...+
T Consensus        88 sAvYYC~~~~   97 (112)
T d1ncwl1          88 LGVYYCWQGT   97 (112)
T ss_dssp             CEEEEEEECS
T ss_pred             CEeEEEEcCC
Confidence            9999996543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.61  E-value=1.9e-07  Score=66.71  Aligned_cols=72  Identities=18%  Similarity=0.187  Sum_probs=53.3

Q ss_pred             CceeeeecCCeEEEEEEeccC-----CCceEEEEEC--CE---Ee---------ecCCceeEEEeCCeEEEEEcccCCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD-----QPMEVSLTKN--GR---VV---------QSDDRFKFTVLDDYIIIFIKEIRKED   62 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~-----p~~~v~W~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d   62 (591)
                      |..+.+.+|++|+|.|...+.     ....+.|||-  |+   .+         ....++.....++...|.|.+++++|
T Consensus         9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   88 (113)
T d1n4xl_           9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED   88 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCccc
Confidence            678999999999999998642     2246899873  21   11         11245555566777899999999999


Q ss_pred             ceEEEEEEEcC
Q psy12425         63 AGDYTVNLSNS   73 (591)
Q Consensus        63 ~g~Y~c~~~n~   73 (591)
                      ++.|.|...+.
T Consensus        89 savYyCa~~~~   99 (113)
T d1n4xl_          89 LGIYYCFQGSH   99 (113)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEECCC
Confidence            99999976543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.60  E-value=1.1e-07  Score=67.41  Aligned_cols=71  Identities=14%  Similarity=0.096  Sum_probs=54.5

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEE---e---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRV---V---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++|+|.|.........+.|||-  |+.   |         ....|+.....+....|.|.+++++|+|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            7789999999999999886544456899982  221   1         1124566666777789999999999999999


Q ss_pred             EEEEc
Q psy12425         68 VNLSN   72 (591)
Q Consensus        68 c~~~n   72 (591)
                      |.+..
T Consensus        86 CA~~~   90 (108)
T d1nfde1          86 CLSSY   90 (108)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            98763

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=8.6e-08  Score=68.77  Aligned_cols=87  Identities=29%  Similarity=0.485  Sum_probs=64.8

Q ss_pred             CCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe--ecCcceEEEcCCcCCcEEEEEEEEE
Q psy12425         89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST--TCHDTTFIVQGLTEGQEYLFHVMAV  166 (591)
Q Consensus        89 p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~y~~~~~a~  166 (591)
                      +.+|.. +.+ .....++.|+|.+|... +.++..|.++++.... .|.....  ......+.+.+|.+++.|.|+|+|.
T Consensus         8 ~sPP~~-~~~-~~t~~si~l~W~pp~~~-~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~   83 (108)
T d1v5ja_           8 LSPPRG-LVA-VRTPRGVLLHWDPPELV-PKRLDGYVLEGRQGSQ-GWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAF   83 (108)
T ss_dssp             CCCCEE-EEE-EECSSSEEEEEECCSCC-SSCCCBEEEEEEETTC-CCEEEEEEECSSCCEEECCCCCTTSCEECCBEEE
T ss_pred             CCcCCC-eEE-EEcCCEEEEEEEecccC-CCceeEEEEEeeeeee-eeeeccccccceeeeEEEEeccCCcEEEEEEEEE
Confidence            444554 344 34677899999988744 4578899999987654 4444432  4467789999999999999999999


Q ss_pred             ccCCCCCCCCccC
Q psy12425        167 NENGMGPPLEGIN  179 (591)
Q Consensus       167 n~~g~~~~~~~~~  179 (591)
                      |..|.+.++....
T Consensus        84 n~~g~s~~S~~~~   96 (108)
T d1v5ja_          84 AGSFVSDPSNTAN   96 (108)
T ss_dssp             ETTEEEEECSCCC
T ss_pred             eCCCEeCCcCceE
Confidence            9999887775433

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=5.8e-08  Score=70.88  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEE------e---e---------c----CCceeEE-EeCCeEEEEEc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRV------V---Q---------S----DDRFKFT-VLDDYIIIFIK   56 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~------~---~---------~----~~~~~~~-~~~~~~~l~i~   56 (591)
                      |+.+.+.+|++++|.|.+.+.....+.|+|-  |..      +   .         .    ..++... ..+..++|+|.
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~   87 (122)
T d1nezg_           8 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLN   87 (122)
T ss_dssp             SSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEES
T ss_pred             CCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEc
Confidence            8899999999999999998777778999871  211      1   0         0    0122222 23445789999


Q ss_pred             ccCCCCceEEEEEEEc
Q psy12425         57 EIRKEDAGDYTVNLSN   72 (591)
Q Consensus        57 ~~~~~d~g~Y~c~~~n   72 (591)
                      +++++|+|.|.|.+..
T Consensus        88 ~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          88 KFSKENEGYYFCSVIS  103 (122)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccccCCCEEEEeeEeC
Confidence            9999999999998753

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=9.3e-08  Score=68.88  Aligned_cols=71  Identities=17%  Similarity=0.190  Sum_probs=53.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--C---EEe---------ecCCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--G---RVV---------QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~---~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      |..+.+.+|++++|.|...+.-...+.|||-  +   +.|         ....++.....+....|.|.+++++|+|.|.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy   87 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF   87 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence            6788999999999999987655567899983  1   111         1124455555666689999999999999999


Q ss_pred             EEEEc
Q psy12425         68 VNLSN   72 (591)
Q Consensus        68 c~~~n   72 (591)
                      |.+..
T Consensus        88 Ca~~~   92 (119)
T d1f3rb2          88 CYQYN   92 (119)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            98764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.58  E-value=6.5e-08  Score=69.99  Aligned_cols=72  Identities=10%  Similarity=0.084  Sum_probs=50.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEE--CCE---Eee----------cCCceeEE--EeCCeEEEEEcccCCCCce
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTK--NGR---VVQ----------SDDRFKFT--VLDDYIIIFIKEIRKEDAG   64 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~--~~~---~~~----------~~~~~~~~--~~~~~~~l~i~~~~~~d~g   64 (591)
                      |..+.+.+|++|+|.|.........+.|||  .|.   .+.          ...+....  ..+....|.|.+++++|+|
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccc
Confidence            457999999999999998766567789997  221   110          01112222  2233468999999999999


Q ss_pred             EEEEEEEcC
Q psy12425         65 DYTVNLSNS   73 (591)
Q Consensus        65 ~Y~c~~~n~   73 (591)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1i9ea_          87 VYFCAVSGF   95 (115)
T ss_dssp             EEEEEEEET
T ss_pred             eecccccCC
Confidence            999987643

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=4.6e-08  Score=67.45  Aligned_cols=79  Identities=24%  Similarity=0.291  Sum_probs=62.8

Q ss_pred             CCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCC
Q psy12425        192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAG  271 (591)
Q Consensus       192 ~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g  271 (591)
                      +|..+.+...+.+++.|+|.+|.    ..+.+|.+++...+...+............+.+.+|.++..|.|++.|.|..|
T Consensus         3 aP~nl~v~~~~~~s~~l~W~~p~----~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~g   78 (89)
T d1fnha3           3 APSNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQ   78 (89)
T ss_dssp             CCEEEEEEEEETTEEEEEEECCS----SCCSEEEEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESSSC
T ss_pred             cCcCCEEEEecCCEEEEEEeCCC----cCCceEEEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcCCC
Confidence            46678888899999999999863    35789999999877665544333334567899999999999999999999887


Q ss_pred             CCC
Q psy12425        272 LSL  274 (591)
Q Consensus       272 ~~~  274 (591)
                      .+.
T Consensus        79 ~S~   81 (89)
T d1fnha3          79 KSE   81 (89)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.57  E-value=2.4e-07  Score=66.38  Aligned_cols=71  Identities=17%  Similarity=0.226  Sum_probs=53.2

Q ss_pred             CceeeeecCCeEEEEEEeccC------CCceEEEEEC--CEE------------eecCCceeEEEeCCeEEEEEcccCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGD------QPMEVSLTKN--GRV------------VQSDDRFKFTVLDDYIIIFIKEIRKE   61 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~------p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~   61 (591)
                      |..+.+.+|++|+|.|.+.+.      ....+.|||.  |+.            .....++.....+....|.|.+++++
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~   87 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAE   87 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccC
Confidence            788999999999999987642      1235899983  211            11234566666777789999999999


Q ss_pred             CceEEEEEEEc
Q psy12425         62 DAGDYTVNLSN   72 (591)
Q Consensus        62 d~g~Y~c~~~n   72 (591)
                      |+|.|.|.+..
T Consensus        88 Dsa~YyCA~~~   98 (113)
T d1q9ra1          88 DLAVYYCKQSY   98 (113)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCeEEEecccC
Confidence            99999998653

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.7e-07  Score=64.89  Aligned_cols=80  Identities=19%  Similarity=0.274  Sum_probs=63.9

Q ss_pred             CCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCC
Q psy12425        192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAG  271 (591)
Q Consensus       192 ~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g  271 (591)
                      +|..+.+...+.+++.|+|.++.   +..+.+|.+.++..+...+............+.|.+|.++..|.|++.|.+..|
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   79 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQH   79 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT---TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             cCCceEEEEeCCCEEEEEEEecC---CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCCC
Confidence            46677888888999999999863   346789999999876665555444445677899999999999999999999888


Q ss_pred             CCC
Q psy12425        272 LSL  274 (591)
Q Consensus       272 ~~~  274 (591)
                      .+.
T Consensus        80 ~S~   82 (91)
T d1fnfa2          80 EST   82 (91)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            654

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.2e-07  Score=66.34  Aligned_cols=85  Identities=21%  Similarity=0.210  Sum_probs=65.9

Q ss_pred             CCCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEE
Q psy12425        188 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ  267 (591)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~  267 (591)
                      .+|.+|..+.+.. ..+++.|+|.+|...+ ..+.+|.|+++..+...+..  ........+++.+|.++..|.|+++|.
T Consensus        19 ~vP~~P~~~~~~~-~~~si~v~W~~p~~~~-g~i~~Y~i~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A~   94 (113)
T d1x5ia1          19 RVPEVPSSLHVRP-LVTSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQTI--KVDYKQRYYTIENLDPSSHYVITLKAF   94 (113)
T ss_dssp             SCCCSCSEEEEEE-ETTEEEEEEECCSCTT-BCCCEEEEEECSSCGGGEEE--ECCTTCCEEEECSCCSSCEECCEEEEE
T ss_pred             CCCCCCEeeeeee-CCCEEEEEEEccccCC-ccEEEEEEEeeeccccceee--eeeCCccEEEEeccccCcEEEEEEEEE
Confidence            4677777777654 4679999999886654 47899999998766544432  223456789999999999999999999


Q ss_pred             cCCCCCCCC
Q psy12425        268 NEAGLSLPS  276 (591)
Q Consensus       268 n~~g~~~~s  276 (591)
                      |..|.+.+.
T Consensus        95 n~~G~g~~~  103 (113)
T d1x5ia1          95 NNVGEGIPL  103 (113)
T ss_dssp             CSSCBCCCC
T ss_pred             CCCcCCCCe
Confidence            999988654

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=1.9e-07  Score=64.80  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             CCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEc
Q psy12425        189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN  268 (591)
Q Consensus       189 ~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n  268 (591)
                      ++.+|..+.+.....+++.|+|.+|.    ..+.+|.+.++..+...+............++|.+|.++..|.+++.|.+
T Consensus         3 v~~~P~~l~v~~v~~~si~v~W~~p~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~   78 (93)
T d1tdqa1           3 VIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVR   78 (93)
T ss_dssp             SSCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred             cCCcCCCCEEEEeCCCEEEEEEEccc----cCCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEe
Confidence            34567778888999999999999862    35778999999887766655544555678999999999999999999999


Q ss_pred             CCCCCCC
Q psy12425        269 EAGLSLP  275 (591)
Q Consensus       269 ~~g~~~~  275 (591)
                      ..|.+.+
T Consensus        79 ~~g~s~~   85 (93)
T d1tdqa1          79 GTNESDA   85 (93)
T ss_dssp             TTEECCC
T ss_pred             CCCCcCC
Confidence            9887653

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.5e-07  Score=65.55  Aligned_cols=81  Identities=21%  Similarity=0.360  Sum_probs=63.9

Q ss_pred             CCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEcc
Q psy12425         89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNE  168 (591)
Q Consensus        89 p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~  168 (591)
                      |.+|.. +.+..+...++.|+|.+|.    ..+.+|.+.+...+...+... .......+.+.+|.+++.|.|++.|.+.
T Consensus         1 P~~P~~-l~~~~~t~~si~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~l~~L~p~t~Y~~~V~a~~~   74 (102)
T d2cuha1           1 PDGPTQ-LRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAE-TPGSAVDYPLHDLVLHTNYTATVRGLRG   74 (102)
T ss_dssp             CSSCEE-EECCCCSSSCEEEEEECCS----SCCSEEEEEEECSSSCCEEEE-EETTCSEEEECSCCSSSEEEEEEEEEET
T ss_pred             CcCCCc-cEEEEeCCCEEEEEEEeee----ccceeeEEEEEeccccceeee-eeeeeeeEEEccEEeeEEEEEEEEEEeC
Confidence            445554 5677788999999999875    257889999988766555543 3456789999999999999999999998


Q ss_pred             CCCCCCC
Q psy12425        169 NGMGPPL  175 (591)
Q Consensus       169 ~g~~~~~  175 (591)
                      .|.+...
T Consensus        75 ~~~s~~~   81 (102)
T d2cuha1          75 PNLTSPA   81 (102)
T ss_dssp             TEECCCE
T ss_pred             CCCcCCE
Confidence            8877654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.56  E-value=1.2e-07  Score=68.61  Aligned_cols=73  Identities=14%  Similarity=0.177  Sum_probs=51.3

Q ss_pred             CceeeeecCCeEEEEEEecc-CCCceEEEEEC--CEE---e----------ecCCceeEEE--eCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAG-DQPMEVSLTKN--GRV---V----------QSDDRFKFTV--LDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~--~~~---~----------~~~~~~~~~~--~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++|+|.|.... .....+.|||-  +..   |          ....+.++..  .+....|.|.+++++|+
T Consensus         7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (114)
T d2ak4d1           7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDS   86 (114)
T ss_dssp             CCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             CCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccC
Confidence            67899999999999998754 33456889982  211   1          0112333332  34457899999999999


Q ss_pred             eEEEEEEEcCC
Q psy12425         64 GDYTVNLSNSS   74 (591)
Q Consensus        64 g~Y~c~~~n~~   74 (591)
                      |.|.|.+....
T Consensus        87 g~YyCa~~~~~   97 (114)
T d2ak4d1          87 AVYFCALSGFY   97 (114)
T ss_dssp             EEEEEEEECSB
T ss_pred             CCceEeCCCCC
Confidence            99999876554

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=6.7e-08  Score=71.11  Aligned_cols=74  Identities=23%  Similarity=0.376  Sum_probs=51.2

Q ss_pred             CCceeeeecCCeEEEEEEeccC-------CCceEEEEECCEE---------------eecC--CceeEEE--eCCeEEEE
Q psy12425          1 MPNALYIPEGDNTKVKIFYAGD-------QPMEVSLTKNGRV---------------VQSD--DRFKFTV--LDDYIIIF   54 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~~-------p~~~v~W~~~~~~---------------~~~~--~~~~~~~--~~~~~~l~   54 (591)
                      +|..++|.+|++|.|.|.+...       ....+.|++....               +...  +|+.+..  ....++|.
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS   86 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence            5889999999999999998521       1246789886421               1111  2333322  12357899


Q ss_pred             EcccCCCCceEEEEEEEcCC
Q psy12425         55 IKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus        55 i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      |.+|+++|+|.|.|.+....
T Consensus        87 I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEETT
T ss_pred             ECCCChHHCEEEEEEEEeCC
Confidence            99999999999999996543

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=7.7e-08  Score=70.21  Aligned_cols=95  Identities=24%  Similarity=0.396  Sum_probs=69.5

Q ss_pred             CCCCCCCCcceE--EecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe---ecCcceEEEcCCcCCcEEEEE
Q psy12425         88 LPGPPIGPLDVS--EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST---TCHDTTFIVQGLTEGQEYLFH  162 (591)
Q Consensus        88 ~p~~p~~~~~~~--~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~~~  162 (591)
                      +|.+|.+ +.+.  .....+++|+|.+|.+.++ .+..|.++++......|.....   ......+.|.+|.++..|.|+
T Consensus         4 kP~pP~~-~~v~~~~~~~~si~v~W~~p~~~~~-~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~   81 (115)
T d1bqua2           4 KPNPPHN-LSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR   81 (115)
T ss_dssp             ECCCCEE-EEEECC--CCSCEEEEEECCGGGGT-SCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEE
T ss_pred             ECCCCCC-CEEEEeccCCCEEEEEEeecccccc-ceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEE
Confidence            3566654 3343  3557889999998875544 6778999999888877765433   244578999999999999999


Q ss_pred             EEEEccCCCCCCCCccCccccc
Q psy12425        163 VMAVNENGMGPPLEGINPIKAK  184 (591)
Q Consensus       163 ~~a~n~~g~~~~~~~~~~~~~~  184 (591)
                      |+|.|..|.+..+..+..+...
T Consensus        82 V~a~~~~G~g~~S~~S~~~~~~  103 (115)
T d1bqua2          82 IRCMKEDGKGYWSDWSEEASGI  103 (115)
T ss_dssp             EEEEETTSCSCCCCCCCCEEEE
T ss_pred             EEEEeCCCccCCcCCcCCEEEE
Confidence            9999999988777655444433

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.55  E-value=1.3e-07  Score=67.83  Aligned_cols=72  Identities=17%  Similarity=0.262  Sum_probs=52.5

Q ss_pred             CceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEEe------------ecCCceeEEE--eCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRVV------------QSDDRFKFTV--LDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~~------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~   63 (591)
                      |..+++.+|++|+|.|...+..  ..-+.|+|-  ++.+            ...+++....  ..+...|.|.+++++|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            6789999999999999987643  235899883  2111            1124455443  35568999999999999


Q ss_pred             eEEEEEEEcC
Q psy12425         64 GDYTVNLSNS   73 (591)
Q Consensus        64 g~Y~c~~~n~   73 (591)
                      +.|.|.....
T Consensus        87 a~YyCA~~~~   96 (111)
T d1cd0a_          87 ADYYCQSYDA   96 (111)
T ss_dssp             EEEEEEEEET
T ss_pred             cEEEEeeccC
Confidence            9999987654

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=2.6e-07  Score=64.06  Aligned_cols=76  Identities=20%  Similarity=0.259  Sum_probs=60.5

Q ss_pred             cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEe---ecCcceEEEcCCcCCcEEEEEEEEEccCCCC
Q psy12425         96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIST---TCHDTTFIVQGLTEGQEYLFHVMAVNENGMG  172 (591)
Q Consensus        96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~  172 (591)
                      +.+......++.|+|.+|.    ..+.+|.+.+.......+.....   ......+.+.+|.+++.|.|++.|.+..|.+
T Consensus         7 l~v~~~~~~sv~v~W~~p~----~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s   82 (92)
T d1tdqa2           7 LRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQS   82 (92)
T ss_dssp             EEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEEC
T ss_pred             CEEEEecCCEEEEEEEecC----CcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEeCCCEe
Confidence            6777788999999999875    25778999998876655443332   3455789999999999999999999999887


Q ss_pred             CCC
Q psy12425        173 PPL  175 (591)
Q Consensus       173 ~~~  175 (591)
                      .+.
T Consensus        83 ~p~   85 (92)
T d1tdqa2          83 IPA   85 (92)
T ss_dssp             CCE
T ss_pred             cCE
Confidence            654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.55  E-value=3.5e-07  Score=66.14  Aligned_cols=72  Identities=13%  Similarity=0.151  Sum_probs=51.4

Q ss_pred             CceeeeecCCeEEEEEEecc-CCCceEEEEEC-----CEEe------e-----------cCCceeEEE--eCCeEEEEEc
Q psy12425          2 PNALYIPEGDNTKVKIFYAG-DQPMEVSLTKN-----GRVV------Q-----------SDDRFKFTV--LDDYIIIFIK   56 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~-----~~~~------~-----------~~~~~~~~~--~~~~~~l~i~   56 (591)
                      |..+.+.+|++|+|.|.+.+ .....+.|+|-     ++.+      .           ...++....  .....+|.|.
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   84 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM   84 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence            78899999999999999976 34567899973     2221      0           112333333  2234689999


Q ss_pred             ccCCCCceEEEEEEEcC
Q psy12425         57 EIRKEDAGDYTVNLSNS   73 (591)
Q Consensus        57 ~~~~~d~g~Y~c~~~n~   73 (591)
                      +++++|+|.|.|.+...
T Consensus        85 ~~~~~Dsg~Y~Ca~~~~  101 (115)
T d2atpb1          85 NVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             SCCGGGCEEEEEEEECS
T ss_pred             ccCCCCCcEEEEeEcCC
Confidence            99999999999987543

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=7.3e-08  Score=67.23  Aligned_cols=84  Identities=13%  Similarity=-0.010  Sum_probs=67.3

Q ss_pred             CCCCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEc
Q psy12425        189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN  268 (591)
Q Consensus       189 ~p~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n  268 (591)
                      +|.+|..+.+......++.|+|.++... + ....|.+.++..+...|............+.+.+|.++..|.|++.|.|
T Consensus         3 PP~~P~n~~~~~~~~~si~~~W~p~~~~-~-~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N   80 (95)
T d1bqua1           3 PPEKPKNLSCIVNEGKKMRCEWDGGRET-H-LETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAEN   80 (95)
T ss_dssp             CCCCCEEEEEEEETTSCCEEEEECCSCC-S-SCCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEE
T ss_pred             CcCCCeeeEEEEccCCEEEEEEeCcccC-C-CceEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEEEe
Confidence            6788888999999999999999987443 3 3468999998877666655554444556788889999999999999999


Q ss_pred             CCCCCC
Q psy12425        269 EAGLSL  274 (591)
Q Consensus       269 ~~g~~~  274 (591)
                      ..|.+.
T Consensus        81 ~~G~s~   86 (95)
T d1bqua1          81 ALGKVT   86 (95)
T ss_dssp             TTEEEE
T ss_pred             CCcccc
Confidence            999764

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.5e-07  Score=65.02  Aligned_cols=81  Identities=21%  Similarity=0.271  Sum_probs=64.1

Q ss_pred             CCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCC
Q psy12425        192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAG  271 (591)
Q Consensus       192 ~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g  271 (591)
                      +|..+.+......++.|+|.++.    ..+.+|.+.+.......+............+++.+|.++..|.|++.|.|..|
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g   77 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTL   77 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCCEEEEEecCCEEEEEEEccc----eeccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCCC
Confidence            45678888999999999999863    34667888887766555554444455778999999999999999999999988


Q ss_pred             CCCCC
Q psy12425        272 LSLPS  276 (591)
Q Consensus       272 ~~~~s  276 (591)
                      .+..+
T Consensus        78 ~s~~~   82 (90)
T d1fnha1          78 TSRPA   82 (90)
T ss_dssp             ECCCE
T ss_pred             CcCCE
Confidence            77643

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.53  E-value=7.2e-08  Score=69.76  Aligned_cols=72  Identities=14%  Similarity=0.191  Sum_probs=51.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee----------ecCCceeEEE--eCCeEEEEEcccCCCCce
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV----------QSDDRFKFTV--LDDYIIIFIKEIRKEDAG   64 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~----------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g   64 (591)
                      |..+.+.+|++|+|.|.........+.|||-  |+   .|          ....++....  ......|.|.+++++|+|
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCE
T ss_pred             CCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCc
Confidence            7789999999999999997665668999982  21   11          1112233322  223457999999999999


Q ss_pred             EEEEEEEcC
Q psy12425         65 DYTVNLSNS   73 (591)
Q Consensus        65 ~Y~c~~~n~   73 (591)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1j8hd1          87 EYFCAVSES   95 (115)
T ss_dssp             EEEEEEESS
T ss_pred             cceeeecCC
Confidence            999999764

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.52  E-value=4.2e-07  Score=62.01  Aligned_cols=75  Identities=28%  Similarity=0.412  Sum_probs=60.6

Q ss_pred             cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCC
Q psy12425         96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPL  175 (591)
Q Consensus        96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~  175 (591)
                      +.+......++.|+|.+|.    ..+.+|.+.+...... +...........+.+.+|.+++.|.|++.|.+..|.+.+.
T Consensus         6 l~v~~~t~~sv~v~W~~p~----~~~~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s~~~   80 (87)
T d1qr4a1           6 LEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGK-KNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPT   80 (87)
T ss_dssp             EEEESCCSSEEEEEEECCS----SCCSEEEEEEECTTCC-EEEEEECTTCSEEEEESCCSSCEEEEEEEEESSSCBCCCE
T ss_pred             cEEEEecCCEEEEEEECCC----CCcceeEEEeecCCcc-eeEEeCCCCcCEEEECCCCcCCEEEEEEEEEcCCCCccCE
Confidence            5677778899999999875    2577899999876654 4444456677899999999999999999999998876554

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.51  E-value=4.4e-07  Score=65.49  Aligned_cols=73  Identities=14%  Similarity=0.212  Sum_probs=53.0

Q ss_pred             CceeeeecCCeEEEEEEecc-CCCceEEEEE--CCEE---e------------ecCCceeEEEe--CCeEEEEEcccCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAG-DQPMEVSLTK--NGRV---V------------QSDDRFKFTVL--DDYIIIFIKEIRKE   61 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~--~~~~---~------------~~~~~~~~~~~--~~~~~l~i~~~~~~   61 (591)
                      |..+.+.+|++|+|.|.+.+ .....+.|||  .|+.   |            ...+|+.+...  ....+|+|.+++++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   86 (116)
T d1tvda_           7 SPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTE   86 (116)
T ss_dssp             SCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             CCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccc
Confidence            77899999999999999865 3456899997  2211   1            01245554432  33478999999999


Q ss_pred             CceEEEEEEEcCC
Q psy12425         62 DAGDYTVNLSNSS   74 (591)
Q Consensus        62 d~g~Y~c~~~n~~   74 (591)
                      |+|.|.|.+....
T Consensus        87 Dsg~YyCa~~~~~   99 (116)
T d1tvda_          87 DSATYYCAFTLPP   99 (116)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             ccccceeeEecCC
Confidence            9999999887543

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=6.3e-07  Score=63.80  Aligned_cols=87  Identities=25%  Similarity=0.406  Sum_probs=60.3

Q ss_pred             CCCCCCCCcce----EEecCceEEEEecCCCCC---CCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEE
Q psy12425         88 LPGPPIGPLDV----SEITKHTCTLHWNPPKYD---GGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYL  160 (591)
Q Consensus        88 ~p~~p~~~~~~----~~~~~~~~~l~w~~p~~~---~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  160 (591)
                      +|++|.+ +.+    .......+.|+|.+|...   .+..+..|.+++.......|.... ......+.+.+|.+++.|.
T Consensus         2 kP~pP~~-l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~   79 (104)
T d3d48r2           2 QPDPPLE-LAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHF-AGQQTEFKILSLHPGQKYL   79 (104)
T ss_dssp             CCCCCEE-EEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEE-EETCSEEEECC--CCCEEE
T ss_pred             CCcCCCC-CEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeec-cccccEEEECCCCCCCEEE
Confidence            4666664 333    233567799999988632   334556799999888877776554 4467789999999999999


Q ss_pred             EEEEEEccCCC-CCCCC
Q psy12425        161 FHVMAVNENGM-GPPLE  176 (591)
Q Consensus       161 ~~~~a~n~~g~-~~~~~  176 (591)
                      |+|+|.|..|. +..+.
T Consensus        80 ~rVrA~n~~G~ws~wS~   96 (104)
T d3d48r2          80 VQVRCKPDHGYWSAWSP   96 (104)
T ss_dssp             EEEEEEESSSCCCCCCC
T ss_pred             EEEEEEeCCCCCCCCcC
Confidence            99999999886 66554

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.3e-07  Score=64.59  Aligned_cols=80  Identities=16%  Similarity=0.243  Sum_probs=63.2

Q ss_pred             CCCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCC
Q psy12425        191 SPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEA  270 (591)
Q Consensus       191 ~~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~  270 (591)
                      .+|..+.+.....++++|+|.+|.    ..+.+|.+.++......+............+.|.+|.++..|.|++.|.|..
T Consensus         3 d~P~~l~v~~vt~~sv~l~W~~p~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   78 (94)
T d1j8ka_           3 DRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDD   78 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCS----SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSS
T ss_pred             CCCCCCEEEEecCCEEEEEEeCCC----ccccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence            356788999999999999999863    3467899988877665544443434456789999999999999999999988


Q ss_pred             CCCC
Q psy12425        271 GLSL  274 (591)
Q Consensus       271 g~~~  274 (591)
                      |.+.
T Consensus        79 g~S~   82 (94)
T d1j8ka_          79 MESQ   82 (94)
T ss_dssp             CCCC
T ss_pred             CCcC
Confidence            8654

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=5e-07  Score=62.60  Aligned_cols=79  Identities=22%  Similarity=0.293  Sum_probs=62.3

Q ss_pred             CCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCC
Q psy12425         91 PPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENG  170 (591)
Q Consensus        91 ~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g  170 (591)
                      +|.+ +.+......++.|+|.+|.    ..+..|.+.+...+.. +...........+.+.+|.+++.|.|++.|.+..|
T Consensus         4 ~P~~-l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   77 (93)
T d2cuma1           4 APRD-LEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQ-TQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQS   77 (93)
T ss_dssp             CCEE-EEEESCCSSCEEEEEECCS----SCCSEEEEEEECTTSC-EEEEEECSSCSEEEECSCCTTCEEEEEEEEEBTTB
T ss_pred             cCCC-CEEEEeCCCEEEEEEEccc----cccccEEEEEEccccc-cEEEEECCCccEEEEeCccCCCEEEEEEEEEeCCC
Confidence            3443 5677778899999999875    2577899999886654 44444456778899999999999999999999988


Q ss_pred             CCCCC
Q psy12425        171 MGPPL  175 (591)
Q Consensus       171 ~~~~~  175 (591)
                      .+.+.
T Consensus        78 ~s~~~   82 (93)
T d2cuma1          78 LLPPV   82 (93)
T ss_dssp             CCCCE
T ss_pred             CCCCE
Confidence            77654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.49  E-value=9.5e-07  Score=63.02  Aligned_cols=71  Identities=7%  Similarity=0.120  Sum_probs=51.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE-E--e----------ec--CCc-eeEEEeCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR-V--V----------QS--DDR-FKFTVLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~-~--~----------~~--~~~-~~~~~~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++++|.|...+ ....+.|||-  |+ +  +          ..  ..+ ...........|+|.+++++|+
T Consensus         8 P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQT   86 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhC
Confidence            77899999999999999864 3457999982  21 1  0          00  112 2233445668999999999999


Q ss_pred             eEEEEEEEcC
Q psy12425         64 GDYTVNLSNS   73 (591)
Q Consensus        64 g~Y~c~~~n~   73 (591)
                      |.|.|.+...
T Consensus        87 a~YyCa~~~~   96 (110)
T d2aq2a1          87 SVYFCASGGG   96 (110)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEeeCCC
Confidence            9999987643

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.3e-07  Score=69.70  Aligned_cols=87  Identities=23%  Similarity=0.347  Sum_probs=61.7

Q ss_pred             CCCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCce-------EE-E--------EeecCcceEEEc
Q psy12425         88 LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW-------IC-I--------STTCHDTTFIVQ  151 (591)
Q Consensus        88 ~p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~-------~~-~--------~~~~~~~~~~i~  151 (591)
                      .|.+|.. +.+.. ...++.|+|.+|..+++ .+..|.|++.......+       .. .        ........+.+.
T Consensus         7 ~P~aP~~-v~v~~-~~~si~l~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   83 (123)
T d1wfta_           7 GPGAPST-VRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHI   83 (123)
T ss_dssp             CCCCCEE-EEEEE-CSSEEEEEEECCSSCCS-SCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCC
T ss_pred             CCcCCcc-cEEEe-CCCEEEEEecCchhcCC-ceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEc
Confidence            4555554 44443 56789999999886666 89999999876544321       11 1        112233556788


Q ss_pred             CCcCCcEEEEEEEEEccCCCCCCCCc
Q psy12425        152 GLTEGQEYLFHVMAVNENGMGPPLEG  177 (591)
Q Consensus       152 ~l~~~~~y~~~~~a~n~~g~~~~~~~  177 (591)
                      +|.+++.|.|+|+|.|..|.+..+..
T Consensus        84 ~L~p~t~Y~frV~A~N~~G~Gp~S~~  109 (123)
T d1wfta_          84 DYTSRPAIVFRISAKNEKGYGPATQI  109 (123)
T ss_dssp             BCSSSCEEEEEEEEBSSSSBCCCEEE
T ss_pred             CCCCCCEEEEEEEEecCCcCCCCCCc
Confidence            99999999999999999999977654

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=5.4e-07  Score=61.23  Aligned_cols=75  Identities=17%  Similarity=0.235  Sum_probs=60.8

Q ss_pred             cceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCCCCC
Q psy12425         96 LDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPL  175 (591)
Q Consensus        96 ~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~  175 (591)
                      +.+......++.|+|.+|.    ..+.+|.+.+....+..+.. ........+.+.+|.+++.|.|++.|.+..|.+.++
T Consensus         7 l~v~~~~~~s~~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s~p~   81 (86)
T d1tdqa3           7 LMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEV-TVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES   81 (86)
T ss_dssp             EEEEEECSSCEEEEEECCC----SCCSEEEEEEECSSSCCEEE-EEESSCSEEEECCCCTTCCEEEEEEEEETTEECCCE
T ss_pred             CEEEEecCCEEEEEEeCCC----CCccceEEEEecccccceEE-EeCCCccEEEECCCccccEEEEEEEEEcCCCEECCE
Confidence            6777788999999999875    36778999998776554433 345577899999999999999999999988876554

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=9.1e-07  Score=62.83  Aligned_cols=79  Identities=16%  Similarity=0.344  Sum_probs=59.6

Q ss_pred             CeEEEEEecCCCC---CCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCCCCcc
Q psy12425        204 DFVNLSWDKPLDD---GGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASN  280 (591)
Q Consensus       204 ~~v~l~w~~~~~~---~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~  280 (591)
                      .++.|+|.+|...   .+..+..|.++++..+...|.....  .....+.|.+|.++..|.|+++|.+..| +.++..+.
T Consensus        21 ~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~--~~~~~~~i~~L~~~t~Y~frVRa~~~~~-g~ws~wS~   97 (106)
T d1axib2          21 ADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDP--ILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEFSE   97 (106)
T ss_dssp             EEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCC--BSSSEEEEEEEETTSCEEEEEEEEETTS-SCCCCCCC
T ss_pred             CeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeee--cccceEEECCCCCCCEEEEEEEEEECCC-CCCCCCCC
Confidence            4699999998643   2346788999999998888977653  3567999999999999999999998644 33444455


Q ss_pred             eEEEc
Q psy12425        281 SVQIK  285 (591)
Q Consensus       281 ~~~~~  285 (591)
                      .+.+.
T Consensus        98 ~v~v~  102 (106)
T d1axib2          98 VLYVT  102 (106)
T ss_dssp             CEEEC
T ss_pred             CEEEE
Confidence            55544

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=1.9e-07  Score=68.60  Aligned_cols=86  Identities=15%  Similarity=0.179  Sum_probs=54.9

Q ss_pred             CCceeeeecCCeEEEEEEecc---CC---CceEEEEECCE----Ee---------ec--CCceeEEE--eCCeEEEEEcc
Q psy12425          1 MPNALYIPEGDNTKVKIFYAG---DQ---PMEVSLTKNGR----VV---------QS--DDRFKFTV--LDDYIIIFIKE   57 (591)
Q Consensus         1 ~p~~~~v~~G~~~~l~C~~~~---~p---~~~v~W~~~~~----~~---------~~--~~~~~~~~--~~~~~~l~i~~   57 (591)
                      .|..+.+.+|++|.|.|.+..   .+   ...+.|++...    .+         ..  ..|+.+..  .....+|.|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            488999999999999999852   11   23466777431    11         11  12333321  22357899999


Q ss_pred             cCCCCceEEEEEEEcCCeeeE---EEEEEEEe
Q psy12425         58 IRKEDAGDYTVNLSNSSGSVS---GTFTINIT   86 (591)
Q Consensus        58 ~~~~d~g~Y~c~~~n~~g~~~---~~~~l~v~   86 (591)
                      ++.+|+|.|.|++....+..-   .-+.|+|.
T Consensus        86 v~~~DsG~Y~C~v~~~~~~~~~~~~~~~ltVt  117 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISDSNRWLDVKGTTVTVT  117 (118)
T ss_dssp             CCGGGCEEEEEEEECC-CCEEECSSCEEEEEE
T ss_pred             CChhHCEEEEEEEEeCCCCeEEcCCCEEEEEe
Confidence            999999999999976543321   22555554

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.47  E-value=1.8e-07  Score=67.10  Aligned_cols=71  Identities=11%  Similarity=0.072  Sum_probs=50.5

Q ss_pred             CceeeeecCCeEEEEEEeccCC-CceEEEEEC--CEE---e-------ecCC--ceeEEEeCCeEEEEEcccCCCCceEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ-PMEVSLTKN--GRV---V-------QSDD--RFKFTVLDDYIIIFIKEIRKEDAGDY   66 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p-~~~v~W~~~--~~~---~-------~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y   66 (591)
                      |..+.+.+|++|+|.|...+.. ...+.|||-  |+.   |       ....  ++.+........|.|.+++++|+|.|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            7889999999999999987644 345899983  211   1       0112  22233334457899999999999999


Q ss_pred             EEEEEc
Q psy12425         67 TVNLSN   72 (591)
Q Consensus        67 ~c~~~n   72 (591)
                      .|.+..
T Consensus        85 yCa~~~   90 (112)
T d1kgcd1          85 YCILPL   90 (112)
T ss_dssp             EEECCC
T ss_pred             eeeEec
Confidence            998754

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=5.1e-07  Score=63.79  Aligned_cols=88  Identities=20%  Similarity=0.232  Sum_probs=66.5

Q ss_pred             CCCCCCCeEEeecCCeEEEEEecCC-CCCCcceEEEEEEeeecCCCccEEE--EeeecCCceeeecCcccCCcEEEEEEE
Q psy12425        190 PSPPGIPVVTQVGGDFVNLSWDKPL-DDGGSRIQGYWIDKHEVGSDAWQRV--NVAICAPSQINIPNLIEGRQYEFRVYA  266 (591)
Q Consensus       190 p~~~~~~~~~~~~~~~v~l~w~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~y~c~a  266 (591)
                      +.+|..+.+.....+++.|+|..+. ...+..+.+|.+.++..+...+...  .........+.|.+|.++..|.|+++|
T Consensus         2 ~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a   81 (101)
T d1x4ya1           2 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQC   81 (101)
T ss_dssp             CSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEEE
Confidence            4566677888889999999998643 3445688999999987655433221  122345678899999999999999999


Q ss_pred             EcCCCCCCCCC
Q psy12425        267 QNEAGLSLPSS  277 (591)
Q Consensus       267 ~n~~g~~~~s~  277 (591)
                      .|..|.+..+.
T Consensus        82 ~n~~G~s~~S~   92 (101)
T d1x4ya1          82 FNEGGESEFSN   92 (101)
T ss_dssp             ECTTCCCCCCC
T ss_pred             EcCCCCCCCCC
Confidence            99999887653

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.46  E-value=2.1e-07  Score=67.39  Aligned_cols=72  Identities=13%  Similarity=0.195  Sum_probs=51.7

Q ss_pred             CceeeeecCCeEEEEEEecc-CCCceEEEEEC--CEE----e---------ecCCceeEEE--eCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAG-DQPMEVSLTKN--GRV----V---------QSDDRFKFTV--LDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~-~p~~~v~W~~~--~~~----~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++|+|.|.... .....+.|||-  |+.    +         ....++.+..  ......|.|.+++++|+
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS   85 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccc
Confidence            67899999999999999854 34456899982  111    1         0113444443  33457899999999999


Q ss_pred             eEEEEEEEcC
Q psy12425         64 GDYTVNLSNS   73 (591)
Q Consensus        64 g~Y~c~~~n~   73 (591)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1fo0a_          86 AVYFCAMRGD   95 (115)
T ss_dssp             EEEEEEEECC
T ss_pred             ccccceeecC
Confidence            9999998644

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.45  E-value=8.4e-07  Score=61.11  Aligned_cols=64  Identities=16%  Similarity=0.420  Sum_probs=46.5

Q ss_pred             CCeEEEEEEeccCCCceEEEEEC--CE---Ee--------ecCCceeEEE--eCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425         10 GDNTKVKIFYAGDQPMEVSLTKN--GR---VV--------QSDDRFKFTV--LDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus        10 G~~~~l~C~~~~~p~~~v~W~~~--~~---~~--------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      |++|+|.|.........+.|||-  |+   .|        ....++....  ..+..+|.|.+++++|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            89999999988777778999982  11   11        1223444432  334578999999999999999998754

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.7e-07  Score=65.73  Aligned_cols=82  Identities=20%  Similarity=0.304  Sum_probs=62.5

Q ss_pred             cceEEecCceEEEEecCCCCC-CCcceeeEEEEEEecCCCceEE-----EEeecCcceEEEcCCcCCcEEEEEEEEEccC
Q psy12425         96 LDVSEITKHTCTLHWNPPKYD-GGLKVTHYVVERRDISMPHWIC-----ISTTCHDTTFIVQGLTEGQEYLFHVMAVNEN  169 (591)
Q Consensus        96 ~~~~~~~~~~~~l~w~~p~~~-~~~~~~~y~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~  169 (591)
                      +.+......++.|+|.+|... .+..+..|.+.++......+..     .........+.+.+|.+++.|.|+++|.|..
T Consensus        15 v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~   94 (109)
T d1va9a1          15 VTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRA   94 (109)
T ss_dssp             EEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEEEEETT
T ss_pred             cEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEEEEEEEEcCC
Confidence            566778889999999987633 3457889999998765443322     1123456789999999999999999999999


Q ss_pred             CCCCCCCc
Q psy12425        170 GMGPPLEG  177 (591)
Q Consensus       170 g~~~~~~~  177 (591)
                      |.+..+..
T Consensus        95 G~g~~S~~  102 (109)
T d1va9a1          95 GTGPSSSE  102 (109)
T ss_dssp             EECCCCCC
T ss_pred             cCCCCCCC
Confidence            98877644

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.45  E-value=3.4e-07  Score=65.76  Aligned_cols=73  Identities=25%  Similarity=0.435  Sum_probs=50.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE-E--e-e------cCCcee--EE-EeCCeEEEEEcccCCCCceEE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR-V--V-Q------SDDRFK--FT-VLDDYIIIFIKEIRKEDAGDY   66 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~-~--~-~------~~~~~~--~~-~~~~~~~l~i~~~~~~d~g~Y   66 (591)
                      |..+.+.+|++++|.|...+. ...+.|||-  +. +  | .      ......  +. ...+.+.|.|.+++++|+|.|
T Consensus         8 P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTY   86 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEE
T ss_pred             CCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEE
Confidence            778999999999999998753 457899982  21 1  1 0      001111  11 123446899999999999999


Q ss_pred             EEEEEcCCe
Q psy12425         67 TVNLSNSSG   75 (591)
Q Consensus        67 ~c~~~n~~g   75 (591)
                      .|.+....+
T Consensus        87 yCa~~~~~~   95 (113)
T d1h5ba_          87 FCAAEASSG   95 (113)
T ss_dssp             EEEEECSSS
T ss_pred             EEEecCCCC
Confidence            999875543

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.4e-07  Score=62.82  Aligned_cols=76  Identities=16%  Similarity=0.255  Sum_probs=56.9

Q ss_pred             cceEEecC-ceEEEEecCCCCCCCcceeeEEEEEEecCCCce--EEEEeecCcceEEEcCCcCCcEEEEEEEEEccCCCC
Q psy12425         96 LDVSEITK-HTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW--ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMG  172 (591)
Q Consensus        96 ~~~~~~~~-~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~  172 (591)
                      +.+..... ..+.|+|.+|.   +..+.+|.|.+....+..+  ...........+.|.+|.+++.|.+++.|.+..|.+
T Consensus         8 l~v~~~~~ts~i~v~W~~p~---~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s   84 (94)
T d1fnfa1           8 LHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKES   84 (94)
T ss_dssp             EEEEECSSSSCEEEEEECCS---CSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEEEETTEEC
T ss_pred             cEEEEecCCCEEEEEeeCCC---CCCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEEEcCCCEe
Confidence            55665554 45899999875   3458899999987655443  223334567789999999999999999999988876


Q ss_pred             CC
Q psy12425        173 PP  174 (591)
Q Consensus       173 ~~  174 (591)
                      .+
T Consensus        85 ~p   86 (94)
T d1fnfa1          85 VP   86 (94)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.9e-07  Score=66.24  Aligned_cols=83  Identities=13%  Similarity=0.154  Sum_probs=51.3

Q ss_pred             eeeeecCCeEEEEEEeccCCC---ce--EEEEECCEEe--------------ecCCceeEEEeCCeEEEEEcccCCCCce
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQP---ME--VSLTKNGRVV--------------QSDDRFKFTVLDDYIIIFIKEIRKEDAG   64 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~---~~--v~W~~~~~~~--------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g   64 (591)
                      .+.+..|++|+|.|.+...+.   ..  +.|.+++..+              ....+.+.....+..+|.|.+++.+|+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            578899999999999864332   22  3444543211              0111222334445568999999999999


Q ss_pred             EEEEEEEcCC--eee---EEEEEEEEe
Q psy12425         65 DYTVNLSNSS--GSV---SGTFTINIT   86 (591)
Q Consensus        65 ~Y~c~~~n~~--g~~---~~~~~l~v~   86 (591)
                      .|.|.+....  |..   ...+.|.|.
T Consensus        83 ~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          83 LYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEcceEEEEEE
Confidence            9999986332  321   334555553

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.2e-07  Score=66.14  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             eeeeecCCeEEEEEEeccCC----CceEEEEECCEEeec------------CCceeEEEeCCeEEEEEcccCCCCceEEE
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ----PMEVSLTKNGRVVQS------------DDRFKFTVLDDYIIIFIKEIRKEDAGDYT   67 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~   67 (591)
                      .++...|++++|.|.+....    ...+.|.+++..+..            ..+..+.. .+..+|.|.+++++|+|.|.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v~~~D~G~Y~   81 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYE   81 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcCChHHCeEEE
Confidence            47899999999999886422    246889888765411            13333322 23468999999999999999


Q ss_pred             EEEEcCCe
Q psy12425         68 VNLSNSSG   75 (591)
Q Consensus        68 c~~~n~~g   75 (591)
                      |.+.+..+
T Consensus        82 C~V~~~~~   89 (105)
T d1dr9a1          82 CVVLKYEK   89 (105)
T ss_dssp             EEEEECCT
T ss_pred             EEEEeCCC
Confidence            99976533

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.9e-07  Score=66.36  Aligned_cols=70  Identities=16%  Similarity=0.175  Sum_probs=48.9

Q ss_pred             eeeeecCCeEEEEEEecc--CCCceEEEEEC--C---EEee------------cCCceeEEE--eCCeEEEEEcccCCCC
Q psy12425          4 ALYIPEGDNTKVKIFYAG--DQPMEVSLTKN--G---RVVQ------------SDDRFKFTV--LDDYIIIFIKEIRKED   62 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~--~p~~~v~W~~~--~---~~~~------------~~~~~~~~~--~~~~~~l~i~~~~~~d   62 (591)
                      .+.|.+|++|+|.|.+.+  .....+.|+|.  +   ..+.            ..+|+.+..  ..+..+|+|.+++++|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            477889999999999864  24457889983  2   1111            012444443  2344789999999999


Q ss_pred             ceEEEEEEEcC
Q psy12425         63 AGDYTVNLSNS   73 (591)
Q Consensus        63 ~g~Y~c~~~n~   73 (591)
                      +|.|.|.+...
T Consensus        88 sg~Y~Cav~~~   98 (113)
T d1smoa_          88 SGLYQCVIYQP   98 (113)
T ss_dssp             CEEEEEEECCT
T ss_pred             CceEEEEEECC
Confidence            99999988544

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.6e-07  Score=65.97  Aligned_cols=83  Identities=11%  Similarity=0.064  Sum_probs=52.1

Q ss_pred             eecCCeEEEEEEecc-CCCc--eEEEEECCEEeecCCceeEEEe-C---CeEEEEEcccCCCCceEEEEEEEcCCeee--
Q psy12425          7 IPEGDNTKVKIFYAG-DQPM--EVSLTKNGRVVQSDDRFKFTVL-D---DYIIIFIKEIRKEDAGDYTVNLSNSSGSV--   77 (591)
Q Consensus         7 v~~G~~~~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~-~---~~~~l~i~~~~~~d~g~Y~c~~~n~~g~~--   77 (591)
                      +.+|+.++|.|.+.+ .|.+  .+.|+++++.+........... +   ....|.+.-...++...|+|+|.+..+..  
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~   92 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS   92 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence            589999999999976 6754  7999999988753211110000 0   12356665444444558999999876442  


Q ss_pred             -----EEEEEEEEecCC
Q psy12425         78 -----SGTFTINITGLP   89 (591)
Q Consensus        78 -----~~~~~l~v~~~p   89 (591)
                           +....|.|...|
T Consensus        93 ~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          93 VPTVRQAVKELQVYISP  109 (109)
T ss_dssp             SCSEEEEEEECCEECCC
T ss_pred             cccccceeEEeEEEeCC
Confidence                 334556666554

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.41  E-value=5.1e-07  Score=65.34  Aligned_cols=73  Identities=14%  Similarity=0.200  Sum_probs=53.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEE---e----------e----cCCceeEEE-eCCeEEEEEcccCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRV---V----------Q----SDDRFKFTV-LDDYIIIFIKEIRKE   61 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~---~----------~----~~~~~~~~~-~~~~~~l~i~~~~~~   61 (591)
                      |..+.+.+|++|+|.|...+.....+.|||-  |+.   |          .    ...++.... ......|.|.+++++
T Consensus         8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   87 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPE   87 (118)
T ss_dssp             CSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGG
T ss_pred             CCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccc
Confidence            6778999999999999987766678999982  211   1          0    113344433 233478999999999


Q ss_pred             CceEEEEEEEcCC
Q psy12425         62 DAGDYTVNLSNSS   74 (591)
Q Consensus        62 d~g~Y~c~~~n~~   74 (591)
                      |+|.|.|.+....
T Consensus        88 Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          88 DSGFYVCSALAGS  100 (118)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             cCceEEEEEecCC
Confidence            9999999986543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=3.7e-07  Score=63.53  Aligned_cols=82  Identities=15%  Similarity=0.201  Sum_probs=56.2

Q ss_pred             eeecCCCeEEEEEeeec--cCCCeEEEeeCCeEeeec--cceEEE-----ecCCeeEEEEeccCCCcceeEEEEEEcCCC
Q psy12425        398 AYFDKGENVVVKIPFTG--YPKPKITWYRDNEVIESG--GHFHVE-----TSERHAILTIRDASNVDTAPYRVVAENDLG  468 (591)
Q Consensus       398 ~~~~~g~~~~l~c~~~~--~p~~~v~W~~~~~~~~~~--~~~~~~-----~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g  468 (591)
                      +....|+++.|.|....  .....|.|++++..+...  ......     ......+|+|.+++.+|+|.|+|.+.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            33467999999996432  233479999988766421  000011     111346799999999999999999999999


Q ss_pred             cc--ceEEEEEec
Q psy12425        469 MD--SAIVKIQIS  479 (591)
Q Consensus       469 ~~--~~~~~~~v~  479 (591)
                      ..  +..+.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            87  556666653

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=1.9e-06  Score=60.63  Aligned_cols=72  Identities=17%  Similarity=0.260  Sum_probs=54.2

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      .+..+.+.+|+.++|.|.........+.|++.  +..            .....++....++...+|.|.++.++|++.|
T Consensus         6 sP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Y   85 (106)
T d1a0ql1           6 SPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATY   85 (106)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeE
Confidence            34556688999999999987666667899873  111            1123456666777888999999999999999


Q ss_pred             EEEEEe
Q psy12425        364 VCRAVN  369 (591)
Q Consensus       364 ~c~a~n  369 (591)
                      .|.+..
T Consensus        86 yCa~~~   91 (106)
T d1a0ql1          86 YCLQYY   91 (106)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            998754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.40  E-value=4e-07  Score=64.97  Aligned_cols=72  Identities=15%  Similarity=0.144  Sum_probs=51.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEE---e---------ecCCceeEEEe--CCeEEEEEcccCCCCceE
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRV---V---------QSDDRFKFTVL--DDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~---~---------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~   65 (591)
                      |..+.+.+|++|+|.|.........+.|||-  |+.   |         ....++.....  .....|.|.+++++|+|.
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~   86 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAV   86 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcc
Confidence            6789999999999999987655567999982  211   1         01123333322  234789999999999999


Q ss_pred             EEEEEEcC
Q psy12425         66 YTVNLSNS   73 (591)
Q Consensus        66 Y~c~~~n~   73 (591)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (110)
T d1ac6a_          87 YYCALSGG   94 (110)
T ss_dssp             EEEEEEET
T ss_pred             cceeecCC
Confidence            99987644

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=9.1e-08  Score=78.06  Aligned_cols=123  Identities=11%  Similarity=-0.047  Sum_probs=38.5

Q ss_pred             cCCCcceeEEEEEEcCCCccceEEEEEecCC----------CCCCCCCeeeeecCCeeEEEeeccccCCCcceeeEEEEe
Q psy12425        451 ASNVDTAPYRVVAENDLGMDSAIVKIQISDR----------PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEK  520 (591)
Q Consensus       451 ~~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~----------p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~~~~y~v~~  520 (591)
                      +.....+.+...|.+..|.............          +..+..+.+.......+.+.|..+..... ....|.+.+
T Consensus        60 ~~~~~~y~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  138 (196)
T d2dtge2          60 KLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRK-RRSLGDVGN  138 (196)
T ss_dssp             CCCC----------------------------------------------------------------------------
T ss_pred             ccceeEEEEEEEEEcCCccccCcCCccceecCCCCccccccccCCcCcEEEeccCCceeecccCcCCCcc-ceEEEEEEe
Confidence            3344556777778777665533322222111          11223333444455566667765432111 122233333


Q ss_pred             eeCCCCceEEeceeeeeEEEEcCcccCceEEEEEEEEcCCcCCCCCCCcceEEe
Q psy12425        521 REHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT  574 (591)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~t  574 (591)
                      .......+..........+.|.||.|++.|.|+|+|.|..|.+..+..+..++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~  192 (196)
T d2dtge2         139 AGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSA  192 (196)
T ss_dssp             -----CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEE
T ss_pred             ecCCCccEEEEeccceEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceEEe
Confidence            222222222233445678999999999999999999999999987665555443

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.38  E-value=6.8e-07  Score=64.08  Aligned_cols=70  Identities=16%  Similarity=0.179  Sum_probs=48.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee---------ec----CCceeEEE-eCCeEEEEEcccCCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV---------QS----DDRFKFTV-LDDYIIIFIKEIRKED   62 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~---------~~----~~~~~~~~-~~~~~~l~i~~~~~~d   62 (591)
                      |..+.+.+|++++|.|...+ ....+.|||-  ++   .+         ..    ..++.... .....+|.|.+++++|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence            77889999999999998653 3457999982  11   11         01    12222222 2234789999999999


Q ss_pred             ceEEEEEEEc
Q psy12425         63 AGDYTVNLSN   72 (591)
Q Consensus        63 ~g~Y~c~~~n   72 (591)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (112)
T d1kgce1          85 SAVYLCASSL   94 (112)
T ss_dssp             CEEEEEEEES
T ss_pred             CEEEEEeeeC
Confidence            9999998864

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.38  E-value=9.1e-07  Score=63.59  Aligned_cols=71  Identities=15%  Similarity=0.114  Sum_probs=50.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEE--CCEEe---------------ecCCceeEEE-eCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTK--NGRVV---------------QSDDRFKFTV-LDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~--~~~~~---------------~~~~~~~~~~-~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++++|.|...+. ...+.|||  .|+..               ....++.... ......|+|.+++++|+
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS   84 (113)
T ss_dssp             CSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence            678999999999999997543 45789998  23211               0112222222 23357899999999999


Q ss_pred             eEEEEEEEcC
Q psy12425         64 GDYTVNLSNS   73 (591)
Q Consensus        64 g~Y~c~~~n~   73 (591)
                      |.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (113)
T d2ntsp1          85 ALYLCASSLA   94 (113)
T ss_dssp             EEEEEEEESS
T ss_pred             eeeeeeeeCC
Confidence            9999988654

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.38  E-value=1.4e-06  Score=62.21  Aligned_cols=71  Identities=17%  Similarity=0.263  Sum_probs=49.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CE---Ee---------ec----CCceeEEEe-CCeEEEEEcccCCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GR---VV---------QS----DDRFKFTVL-DDYIIIFIKEIRKED   62 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~---~~---------~~----~~~~~~~~~-~~~~~l~i~~~~~~d   62 (591)
                      |..+.+.+|++++|.|...+ ....+.|||-  |+   .|         ..    ..++..... +....|+|.+++++|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D   84 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELED   84 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCC
Confidence            77899999999999998654 3457899873  21   11         01    122322222 234789999999999


Q ss_pred             ceEEEEEEEcC
Q psy12425         63 AGDYTVNLSNS   73 (591)
Q Consensus        63 ~g~Y~c~~~n~   73 (591)
                      +|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (111)
T d2esve1          85 SGVYFCASSQD   95 (111)
T ss_dssp             CEEEEEEEESS
T ss_pred             CceEEEeeeCC
Confidence            99999987643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=1.4e-06  Score=63.01  Aligned_cols=70  Identities=14%  Similarity=0.203  Sum_probs=49.9

Q ss_pred             CceeeeecCCeEEEEEEeccCCC---ceEEEEEC--CEE---e----------ecCCc--eeEEEeCCeEEEEEcccCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQP---MEVSLTKN--GRV---V----------QSDDR--FKFTVLDDYIIIFIKEIRKE   61 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~---~~v~W~~~--~~~---~----------~~~~~--~~~~~~~~~~~l~i~~~~~~   61 (591)
                      |..+.+.+|++|+|.|.+.....   ..+.|+|.  |+.   +          ....+  ......++...|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            67889999999999999864322   24789983  221   1          00111  23345566789999999999


Q ss_pred             CceEEEEEEE
Q psy12425         62 DAGDYTVNLS   71 (591)
Q Consensus        62 d~g~Y~c~~~   71 (591)
                      |+|.|.|.+.
T Consensus        86 Dsa~YyCa~~   95 (117)
T d1dqta_          86 DTGLYLCKVE   95 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCEeEEEEEe
Confidence            9999999875

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=5.1e-07  Score=63.91  Aligned_cols=78  Identities=14%  Similarity=0.259  Sum_probs=52.7

Q ss_pred             cceeccccEEEEEEEcCCCCCeeEEecCCccCC-------------------CCCceEEEEeCCeEEEEEcceecccceE
Q psy12425        302 ANAIQNHNAQFQCTITGCPKPTISWLKGSREIT-------------------PSARHHIFAEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~-------------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~  362 (591)
                      ..+.+|++|.|.|.........+.|++......                   -..|..+..++   +|.|.+++.+|+|.
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng---SL~I~~v~~~D~G~   85 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG---SLLFQMITMKDMGV   85 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS---CEEECSCCGGGCEE
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc---cEEEcCCCchhCEE
Confidence            346799999999985444456899988543211                   01234443333   79999999999999


Q ss_pred             EEEEEEeCCcce-eeeeEEEE
Q psy12425        363 YVCRAVNKGGVK-STKAELII  382 (591)
Q Consensus       363 y~c~a~n~~g~~-~~~~~l~v  382 (591)
                      |+|.+.+..+.. ...+.|.|
T Consensus        86 Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          86 YTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999998876543 34455543

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.1e-06  Score=62.42  Aligned_cols=76  Identities=20%  Similarity=0.336  Sum_probs=60.3

Q ss_pred             ecCCeEEEEEecCCCCCCcceEEEEEEeeecC----CCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCCCCCC
Q psy12425        201 VGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVG----SDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS  276 (591)
Q Consensus       201 ~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~~~~s  276 (591)
                      .+.+++.|+|..+..  ...+.+|.+.++...    ...|............+.|.+|.++..|.|++.|.|..|.+..+
T Consensus        27 ~s~tsi~v~W~~p~~--~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~S  104 (120)
T d1ujta_          27 LTPTTVQVTWTVDRQ--PQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDS  104 (120)
T ss_dssp             CBTTEEEEEEEESSC--CSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCCC
T ss_pred             eCCCeEEEEecCCCC--CCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcCCC
Confidence            467899999998743  347899999997653    34566666555567789999999999999999999999988766


Q ss_pred             CC
Q psy12425        277 SA  278 (591)
Q Consensus       277 ~~  278 (591)
                      ..
T Consensus       105 ~~  106 (120)
T d1ujta_         105 ES  106 (120)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.3e-06  Score=64.64  Aligned_cols=84  Identities=19%  Similarity=0.386  Sum_probs=56.7

Q ss_pred             cccceeccccEEEEEEEcCCCC----CeeEEecCCccCCC---------------------CCceEEEE---eCCeEEEE
Q psy12425        300 RNANAIQNHNAQFQCTITGCPK----PTISWLKGSREITP---------------------SARHHIFA---EGDTYTLI  351 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~----~~v~W~~~~~~~~~---------------------~~~~~~~~---~~~~~~l~  351 (591)
                      ..+.+.+|+++.|.|.....+.    ..+.|++.......                     ..+..+..   ..+..+|.
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            3456789999999999865433    35889863221110                     11222221   11235799


Q ss_pred             EcceecccceEEEEEEEeCCcceeeeeEEEEe
Q psy12425        352 INSVYGVDADEYVCRAVNKGGVKSTKAELIIM  383 (591)
Q Consensus       352 i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  383 (591)
                      |.+++.+|+|.|.|.+.+..|.....+.|.|.
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            99999999999999999988877777777764

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1.6e-06  Score=61.05  Aligned_cols=72  Identities=14%  Similarity=0.238  Sum_probs=51.4

Q ss_pred             ceeeeecCCeEEEEEEeccC--CCceEEEEEC--CE----Eeec-----------CCceeEEEe--CCeEEEEEcccCCC
Q psy12425          3 NALYIPEGDNTKVKIFYAGD--QPMEVSLTKN--GR----VVQS-----------DDRFKFTVL--DDYIIIFIKEIRKE   61 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~--~~----~~~~-----------~~~~~~~~~--~~~~~l~i~~~~~~   61 (591)
                      +.+++.+|++|+|.|.+.+.  ......|+|.  |+    .+..           .+|+.+...  .+..+|+|.+|+.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            56889999999999999753  4557889983  32    1111           134444432  34578999999999


Q ss_pred             CceEEEEEEEcCC
Q psy12425         62 DAGDYTVNLSNSS   74 (591)
Q Consensus        62 d~g~Y~c~~~n~~   74 (591)
                      |+|.|.|......
T Consensus        83 Dsa~YyCa~~~~~   95 (110)
T d1u9ka_          83 DSGLYRCVIYHPP   95 (110)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             CCEEEEEEEeCCC
Confidence            9999999986543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.33  E-value=1.6e-06  Score=62.57  Aligned_cols=72  Identities=13%  Similarity=0.235  Sum_probs=52.2

Q ss_pred             CceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE---e---------ecCCceeEEE--eCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV---V---------QSDDRFKFTV--LDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.|.+|++++|.|.+.+..  ...+.|||-  |+.   |         ...+|+....  ..+...|.|.+++++|+
T Consensus         8 ~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Ds   87 (120)
T d1hxma1           8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDE   87 (120)
T ss_dssp             CSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             CCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCC
Confidence            5678899999999999997643  356899982  211   1         1124555443  34568999999999999


Q ss_pred             eEEEEEEEcC
Q psy12425         64 GDYTVNLSNS   73 (591)
Q Consensus        64 g~Y~c~~~n~   73 (591)
                      |.|.|.....
T Consensus        88 a~YyCA~~~~   97 (120)
T d1hxma1          88 GSYYCACDTL   97 (120)
T ss_dssp             EEEEEEEECC
T ss_pred             ceeecCcccC
Confidence            9999987653

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.3e-06  Score=59.94  Aligned_cols=95  Identities=19%  Similarity=0.128  Sum_probs=68.4

Q ss_pred             CCCCCCCeEEeecCCeEEEEEecCCCCCC-cceEEEEEEeeecCCC-ccEEEEeeecCCceeeecCcccCCcEEEEEEEE
Q psy12425        190 PSPPGIPVVTQVGGDFVNLSWDKPLDDGG-SRIQGYWIDKHEVGSD-AWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ  267 (591)
Q Consensus       190 p~~~~~~~~~~~~~~~v~l~w~~~~~~~~-~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~  267 (591)
                      +.+|..+.+...+.+++.|+|..+..... .....|.+.+...... .+............+.|.+|.++..|.|+++|.
T Consensus         3 l~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~   82 (104)
T d2b5ib2           3 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVK   82 (104)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEEEE
T ss_pred             cCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEEEE
Confidence            56788899999999999999998765433 3556788887765432 222333333456789999999999999999999


Q ss_pred             cCCCC-CCCCCCcceEEE
Q psy12425        268 NEAGL-SLPSSASNSVQI  284 (591)
Q Consensus       268 n~~g~-~~~s~~~~~~~~  284 (591)
                      +..|. +.+|..+..+..
T Consensus        83 ~~~g~~g~wS~wS~~v~~  100 (104)
T d2b5ib2          83 PLQGEFTTWSPWSQPLAF  100 (104)
T ss_dssp             ESCCSSCCCCCCCCCEEE
T ss_pred             ECCCCCCCCCCCcCCEEE
Confidence            98774 455555544443

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.7e-06  Score=62.83  Aligned_cols=90  Identities=20%  Similarity=0.276  Sum_probs=63.6

Q ss_pred             CCC-CCCCCcceEEecCceEEEEecCCCCC-CCcceeeEEEEEEecCCCc--------eEEEEeecCcceEEEcCCcCCc
Q psy12425         88 LPG-PPIGPLDVSEITKHTCTLHWNPPKYD-GGLKVTHYVVERRDISMPH--------WICISTTCHDTTFIVQGLTEGQ  157 (591)
Q Consensus        88 ~p~-~p~~~~~~~~~~~~~~~l~w~~p~~~-~~~~~~~y~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~l~~~~  157 (591)
                      .|. +|.+ +.+......++.|+|.+|... ....+..|.+.+.......        ............+.|.+|.+++
T Consensus        13 ~P~~~P~~-v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   91 (125)
T d1uena_          13 LPMVAPGN-VRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFS   91 (125)
T ss_dssp             CCCCCCSS-CEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSC
T ss_pred             CCCCCCcc-cEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCC
Confidence            443 4444 678888999999999987632 2346677777776532221        2222334566789999999999


Q ss_pred             EEEEEEEEEccCCCCCCCCcc
Q psy12425        158 EYLFHVMAVNENGMGPPLEGI  178 (591)
Q Consensus       158 ~y~~~~~a~n~~g~~~~~~~~  178 (591)
                      .|.|+|+|.|..|.+..+...
T Consensus        92 ~Y~~~V~A~n~~G~g~~S~~~  112 (125)
T d1uena_          92 HYTLNVRVVNGKGEGPASPDR  112 (125)
T ss_dssp             EEEEEEEEEESSCEEEECCCE
T ss_pred             EEEEEEEEEeCCcccCCCCCE
Confidence            999999999999987776543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.5e-06  Score=59.57  Aligned_cols=64  Identities=14%  Similarity=0.045  Sum_probs=48.2

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      .|..|++|+|.|.........+.|+|+|.....    +.........+.|.+++.+|+|.|+|.....
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~----~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLP----QHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCC----SEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             ccCCCCeEEEEEeCCCCCceEEEEEECCcccce----EEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            589999999999864345568999999863221    1122345578999999999999999987644

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=3.9e-06  Score=58.96  Aligned_cols=72  Identities=11%  Similarity=0.268  Sum_probs=53.5

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEecC--CccC------------CCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREI------------TPSARHHIFAEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      .|..+.+.+|++++|.|.........+.|++.  +...            ....++.....+...+|.|.++.++|+|.|
T Consensus         7 sP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (106)
T d1i8ka_           7 SPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDY   86 (106)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEE
Confidence            34556688999999999987666667999863  2211            123455666667788999999999999999


Q ss_pred             EEEEEe
Q psy12425        364 VCRAVN  369 (591)
Q Consensus       364 ~c~a~n  369 (591)
                      .|.+.+
T Consensus        87 yCa~~~   92 (106)
T d1i8ka_          87 YCLQSF   92 (106)
T ss_dssp             EEEECS
T ss_pred             eEecCc
Confidence            998643

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=5e-06  Score=58.28  Aligned_cols=72  Identities=19%  Similarity=0.298  Sum_probs=53.2

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      .+..+.+..|++++|.|.........+.|++.  +..            .....+......+....|.|.+++++|+|.|
T Consensus         7 ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   86 (107)
T d1c5cl1           7 SPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEE
Confidence            34456678999999999988776667999872  221            1123345555666778999999999999999


Q ss_pred             EEEEEe
Q psy12425        364 VCRAVN  369 (591)
Q Consensus       364 ~c~a~n  369 (591)
                      .|.+.+
T Consensus        87 yCa~~~   92 (107)
T d1c5cl1          87 YCLQYA   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEecCc
Confidence            997654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=5.9e-06  Score=58.26  Aligned_cols=73  Identities=19%  Similarity=0.311  Sum_probs=54.4

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecCC--ccC------------CCCCceEEEEeCCeEEEEEcceecccceE
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGS--REI------------TPSARHHIFAEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  362 (591)
                      ..+..+.+.+|++++|.|.........+.|++..  ...            ....++....++....|.|.+++++|+|.
T Consensus         6 Q~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1j1pl_           6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEE
Confidence            3345566889999999999876666679998732  111            12345666677778899999999999999


Q ss_pred             EEEEEEe
Q psy12425        363 YVCRAVN  369 (591)
Q Consensus       363 y~c~a~n  369 (591)
                      |.|.+.+
T Consensus        86 YyCa~~~   92 (107)
T d1j1pl_          86 YFCQQAN   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEcCC
Confidence            9997643

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.8e-06  Score=61.89  Aligned_cols=92  Identities=15%  Similarity=0.303  Sum_probs=65.7

Q ss_pred             CCCCCCCCcceEEe--cCceEEEEecCCCCC--CCcceeeEEEEEEecCCCceEEEEeecCcceEEEcCCcCCcEEEEEE
Q psy12425         88 LPGPPIGPLDVSEI--TKHTCTLHWNPPKYD--GGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHV  163 (591)
Q Consensus        88 ~p~~p~~~~~~~~~--~~~~~~l~w~~p~~~--~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~  163 (591)
                      .|.+|.. +.+...  ...++.|+|.+|...  .......|.++++......|..+.. .....+.+.+|.+++.|.|+|
T Consensus         7 kP~PP~~-l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~t~Y~~rV   84 (109)
T d1uc6a_           7 KPDPPEN-VVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVEL-SNGTAHTITDAYAGKEYIIQV   84 (109)
T ss_dssp             CCCCCEE-EEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEE-SSCSEEEETTCCSSSCEEEEE
T ss_pred             ECCCCCC-CEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEecc-CCceeEEeCCCCCCCEEEEEE
Confidence            5677765 445443  457899999988632  2334567999998888888876654 466789999999999999999


Q ss_pred             EEEccCCCCCCCCccCccc
Q psy12425        164 MAVNENGMGPPLEGINPIK  182 (591)
Q Consensus       164 ~a~n~~g~~~~~~~~~~~~  182 (591)
                      +|.+. +.+..+..+..+.
T Consensus        85 rA~~~-~~g~wS~WS~~~~  102 (109)
T d1uc6a_          85 AAKDN-EIGTWSDWSVAAH  102 (109)
T ss_dssp             ECCBS-SSCCCCCCCEEEE
T ss_pred             EEEEC-CCCCcCCCCCCEE
Confidence            99875 4455555444433

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.28  E-value=2.8e-06  Score=60.98  Aligned_cols=72  Identities=15%  Similarity=0.195  Sum_probs=49.4

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEE---e---ec---------CCceeEEE-eCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRV---V---QS---------DDRFKFTV-LDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~---~---~~---------~~~~~~~~-~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++|+|.|... .....+.|||-  |+.   +   ..         ..++.... ....++|.|.+++++|+
T Consensus         6 P~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DS   84 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPT   84 (114)
T ss_dssp             CSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCC
T ss_pred             CCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCc
Confidence            7789999999999999986 34567999983  211   1   00         01111111 23346899999999999


Q ss_pred             eEEEEEEEcCC
Q psy12425         64 GDYTVNLSNSS   74 (591)
Q Consensus        64 g~Y~c~~~n~~   74 (591)
                      |.|.|.+....
T Consensus        85 a~YyCa~~~~~   95 (114)
T d1ogae1          85 AFYLCASSSRS   95 (114)
T ss_dssp             EEEEEEEESST
T ss_pred             eeEEEeeccCC
Confidence            99999876543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.28  E-value=5.6e-06  Score=58.27  Aligned_cols=73  Identities=15%  Similarity=0.297  Sum_probs=54.1

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceecccceE
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  362 (591)
                      ..|..+.+.+|+.++|+|.........+.|++.  +..            .....++....++....|+|.+++++|++.
T Consensus         6 Q~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~   85 (107)
T d1tjgl1           6 QSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFAT   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCce
Confidence            344566688999999999997666678899873  211            112335556667778899999999999999


Q ss_pred             EEEEEEe
Q psy12425        363 YVCRAVN  369 (591)
Q Consensus       363 y~c~a~n  369 (591)
                      |.|.+.+
T Consensus        86 YyCa~~~   92 (107)
T d1tjgl1          86 YYCQQLH   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEECc
Confidence            9997643

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.27  E-value=3.7e-06  Score=59.18  Aligned_cols=71  Identities=17%  Similarity=0.263  Sum_probs=52.6

Q ss_pred             ccccceeccccEEEEEEEcCCCCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceecccceEEE
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      +..+.+.+|++++|.|...+.....+.|++.  +..            -....++.....+....|.|.++.++|++.|.
T Consensus         8 P~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1ospl1           8 SSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYF   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEE
Confidence            4456678999999999987765567999873  211            11234555555666789999999999999999


Q ss_pred             EEEEe
Q psy12425        365 CRAVN  369 (591)
Q Consensus       365 c~a~n  369 (591)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1ospl1          88 CQQYW   92 (107)
T ss_dssp             EEECS
T ss_pred             Eeecc
Confidence            98753

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=8.2e-06  Score=57.59  Aligned_cols=71  Identities=17%  Similarity=0.288  Sum_probs=53.3

Q ss_pred             ccccceeccccEEEEEEEcCCCCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceecccceEEE
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      |..+.+.+|++|+|.|.........+.|++.  +..            .....+...........|+|.+++++|++.|.
T Consensus         8 P~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Yy   87 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYY   87 (107)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEE
Confidence            3456678999999999987766667999873  211            11234556666777889999999999999999


Q ss_pred             EEEEe
Q psy12425        365 CRAVN  369 (591)
Q Consensus       365 c~a~n  369 (591)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1kcvl1          88 CGQSY   92 (107)
T ss_dssp             EEECS
T ss_pred             EEecC
Confidence            98643

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.26  E-value=3.6e-06  Score=60.62  Aligned_cols=71  Identities=8%  Similarity=0.156  Sum_probs=49.6

Q ss_pred             CceeeeecCCeEEEEEEeccCC--CceEEEEEC--C---EEe-------------ecCCceeEEE--eCCeEEEEEcccC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--G---RVV-------------QSDDRFKFTV--LDDYIIIFIKEIR   59 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~---~~~-------------~~~~~~~~~~--~~~~~~l~i~~~~   59 (591)
                      |..+.+.+|++++|.|.+.+..  ...+.|||-  |   +.|             ....++.+..  ..+.+.|.|.+++
T Consensus         8 ~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1           8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (120)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence            4578889999999999986532  356899982  1   111             0113344443  2345789999999


Q ss_pred             CCCceEEEEEEEc
Q psy12425         60 KEDAGDYTVNLSN   72 (591)
Q Consensus        60 ~~d~g~Y~c~~~n   72 (591)
                      ++|++.|.|....
T Consensus        88 ~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          88 EEDEAIYYCSYGE  100 (120)
T ss_dssp             GGGCSEEEEEECC
T ss_pred             cccceeEEEEEcC
Confidence            9999999998754

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.7e-08  Score=69.77  Aligned_cols=87  Identities=18%  Similarity=0.208  Sum_probs=63.6

Q ss_pred             CCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEE---EeecCcceEEEcCCcCCcEEEEEEEE
Q psy12425         89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICI---STTCHDTTFIVQGLTEGQEYLFHVMA  165 (591)
Q Consensus        89 p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~~~y~~~~~a  165 (591)
                      |+.|.. +.+..+..+++.|+|.+|...+| .+.+|.|+++......+...   ........+.+.+|.++ .|.|+++|
T Consensus         5 ~d~P~~-v~~~~~~~~sv~l~W~pP~~~ng-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-tY~~rV~A   81 (102)
T d2dtge1           5 DDIVGP-VTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRA   81 (102)
T ss_dssp             CCCCCC-CCCCSSSSSCCCCCCCCCCSCSS-CEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCCE
T ss_pred             CCCCCC-CEEEEECCCEEEEEEEeCCCCcc-eEEEeeeEEEecCCCCceeeeeeecccceEEEEEecccee-eEEEEEEE
Confidence            444443 66777788999999999886654 68899999876654333221   12345566888999997 59999999


Q ss_pred             EccCCCCCCCCcc
Q psy12425        166 VNENGMGPPLEGI  178 (591)
Q Consensus       166 ~n~~g~~~~~~~~  178 (591)
                      .|..|.|..+...
T Consensus        82 ~n~~G~g~~S~~v   94 (102)
T d2dtge1          82 TSLAGNGSWTEPT   94 (102)
T ss_dssp             EETTBCCCCCCCC
T ss_pred             EcCCccCCCCCCE
Confidence            9999998877543

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.1e-06  Score=59.63  Aligned_cols=82  Identities=12%  Similarity=0.185  Sum_probs=60.9

Q ss_pred             CCCCCCCcceEEecCceEEEEecCCCCCCCcceeeEEEEEEecCCCc---------eEEEEeecCcceEEEcCCcCCcEE
Q psy12425         89 PGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH---------WICISTTCHDTTFIVQGLTEGQEY  159 (591)
Q Consensus        89 p~~p~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~l~~~~~y  159 (591)
                      |..+.. +.+..+...++.|.|.+|.    ..+..|.+++.......         +...........+.+.+|.+++.|
T Consensus         4 Pp~~~~-l~v~~~t~~sv~v~W~pp~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y   78 (101)
T d2cuia1           4 RPRLSQ-LSVTDVTTSSLRLNWEAPP----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLY   78 (101)
T ss_dssp             CCCCCC-CEEESCCSSCEEEECCCCT----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCEE
T ss_pred             ccCCCC-cEEEEECCCEEEEEEEecc----ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCEE
Confidence            333333 7888889999999999765    25778999887654322         222333456788999999999999


Q ss_pred             EEEEEEEccCCCCCCC
Q psy12425        160 LFHVMAVNENGMGPPL  175 (591)
Q Consensus       160 ~~~~~a~n~~g~~~~~  175 (591)
                      .|+|+|.|..|.+...
T Consensus        79 ~~~V~a~~~~g~g~~~   94 (101)
T d2cuia1          79 SLTLYGLRGPHKADSI   94 (101)
T ss_dssp             EEEEEEECSSSEEEEE
T ss_pred             EEEEEEEeCCcEeCCe
Confidence            9999999998876553

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.9e-06  Score=57.62  Aligned_cols=60  Identities=12%  Similarity=0.033  Sum_probs=46.7

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEE
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNL   70 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~   70 (591)
                      .|..|++|+|.|... .+...+.|+|+|....    .+.....+...+.|.+++.+|+|.|+|..
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          14 EVISGEKVTFYCRLD-TATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             EEETTCEEEEEEECS-SSCSEEEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             cccCCCcEEEEECCC-CCCCEEEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEEe
Confidence            488999999999975 5677899999875321    12223346678999999999999999974

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.25  E-value=9.5e-06  Score=56.95  Aligned_cols=73  Identities=15%  Similarity=0.249  Sum_probs=54.4

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecCC--cc------------CCCCCceEEEEeCCeEEEEEcceecccceE
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGS--RE------------ITPSARHHIFAEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  362 (591)
                      ..|..+.+.+|+.++|.|.........+.|++..  ..            .....++....++....|.|.+++++|++.
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFAT   84 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCc
Confidence            3445667889999999999877666678998732  11            112235566667778899999999999999


Q ss_pred             EEEEEEe
Q psy12425        363 YVCRAVN  369 (591)
Q Consensus       363 y~c~a~n  369 (591)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1op3k1          85 YHCQHYA   91 (106)
T ss_dssp             EEEEEEC
T ss_pred             EeeeeCC
Confidence            9998754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.25  E-value=2.7e-08  Score=68.79  Aligned_cols=72  Identities=24%  Similarity=0.382  Sum_probs=50.2

Q ss_pred             ceeeeecCCeEEEEEEeccCCCceEEEEEC--CEEe------------ecCCceeEEE--eCCeEEEEEcccCCCCceEE
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRVV------------QSDDRFKFTV--LDDYIIIFIKEIRKEDAGDY   66 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y   66 (591)
                      +.++|.+|++|+|.|...+ ....+.|||-  |+.+            ....++.+..  ......|.|.+++++|+|.|
T Consensus         1 qslsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   79 (96)
T d1ymmd1           1 QALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASY   79 (96)
T ss_dssp             CCCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCC
T ss_pred             CCceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEE
Confidence            3678999999999998864 3457999982  2211            1123333322  23346899999999999999


Q ss_pred             EEEEEcCCe
Q psy12425         67 TVNLSNSSG   75 (591)
Q Consensus        67 ~c~~~n~~g   75 (591)
                      .|.+....|
T Consensus        80 yCA~~~~~g   88 (96)
T d1ymmd1          80 FCATDTTSG   88 (96)
T ss_dssp             EEEEEETTS
T ss_pred             eEeEecCCC
Confidence            998875544

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.24  E-value=2.2e-06  Score=61.42  Aligned_cols=71  Identities=7%  Similarity=0.124  Sum_probs=48.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEE---e----------ec--CCceeEE-EeCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRV---V----------QS--DDRFKFT-VLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~---~----------~~--~~~~~~~-~~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++|+|.|.... ....+.|||-  |+.   |          ..  ..++... ..+....|.|.+++++|+
T Consensus         7 P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   85 (113)
T d1j8he1           7 SRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQT   85 (113)
T ss_dssp             CSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCc
Confidence            77889999999999998753 3457889982  211   1          00  1122221 123347899999999999


Q ss_pred             eEEEEEEEcC
Q psy12425         64 GDYTVNLSNS   73 (591)
Q Consensus        64 g~Y~c~~~n~   73 (591)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (113)
T d1j8he1          86 SMYLCASSST   95 (113)
T ss_dssp             EEEEEEEECT
T ss_pred             ccEEeeEccC
Confidence            9999998753

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.1e-06  Score=60.33  Aligned_cols=84  Identities=17%  Similarity=0.097  Sum_probs=53.2

Q ss_pred             CCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEEEEcCCCC--
Q psy12425        195 IPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGL--  272 (591)
Q Consensus       195 ~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~g~--  272 (591)
                      .+.+.. .++++.|+|..|....+.....|.++++......+............+.+.+|.++..|.|+++|.+..|.  
T Consensus        10 ~l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa~~~~g~~~   88 (100)
T d2gysa4          10 SLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYN   88 (100)
T ss_dssp             EEEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEEEECCTTCC
T ss_pred             ccEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEEEECCCCCC
Confidence            455544 45679999999877666667789999987655433222233345678999999999999999999987663  


Q ss_pred             CCCCCCc
Q psy12425        273 SLPSSAS  279 (591)
Q Consensus       273 ~~~s~~~  279 (591)
                      +.+|+-+
T Consensus        89 g~WSeWS   95 (100)
T d2gysa4          89 GIWSEWS   95 (100)
T ss_dssp             BCCCCCC
T ss_pred             CCccCCC
Confidence            4555443

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.24  E-value=1.6e-06  Score=62.07  Aligned_cols=70  Identities=10%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEEe-------------ecC--CceeEE-EeCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRVV-------------QSD--DRFKFT-VLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~~-------------~~~--~~~~~~-~~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++++|.|.... ....+.|||-  |+.+             ...  .++... .......|.|.+++++|+
T Consensus         6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQT   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHC
Confidence            67789999999999999864 3567999982  2111             001  111111 122236899999999999


Q ss_pred             eEEEEEEEc
Q psy12425         64 GDYTVNLSN   72 (591)
Q Consensus        64 g~Y~c~~~n   72 (591)
                      |.|.|.+..
T Consensus        85 avYyCA~~~   93 (112)
T d2bnub1          85 SVYFCASSY   93 (112)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEeecC
Confidence            999998764

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.23  E-value=3.3e-06  Score=60.37  Aligned_cols=72  Identities=14%  Similarity=0.122  Sum_probs=50.3

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECC--E---Ee---------e---cCCceeEEE-eCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--R---VV---------Q---SDDRFKFTV-LDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--~---~~---------~---~~~~~~~~~-~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++++|.|..... ...+.|||-.  +   .|         .   ...++.... .+....|.|.+++++|+
T Consensus         8 P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (113)
T d1nfdb1           8 PRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS   86 (113)
T ss_dssp             CSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGC
T ss_pred             CCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCc
Confidence            778999999999999997543 4579999832  1   11         0   112333332 23347899999999999


Q ss_pred             eEEEEEEEcCC
Q psy12425         64 GDYTVNLSNSS   74 (591)
Q Consensus        64 g~Y~c~~~n~~   74 (591)
                      |.|.|.+....
T Consensus        87 a~YyCa~~~~~   97 (113)
T d1nfdb1          87 AMYFCASSLRW   97 (113)
T ss_dssp             EEECEEEESSS
T ss_pred             eeEEEEeecCC
Confidence            99999876543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.23  E-value=8.2e-06  Score=57.30  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=52.2

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEecCC--cc------------CCCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKGS--RE------------ITPSARHHIFAEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      .|..+.+.+|+.++|.|.........+.|++..  ..            ...........++...+|.|.+++++|++.|
T Consensus         7 ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Y   86 (108)
T d1jhll_           7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMY   86 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEE
T ss_pred             cCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEE
Confidence            344566789999999999977666678998731  11            0112334455666778999999999999999


Q ss_pred             EEEEEe
Q psy12425        364 VCRAVN  369 (591)
Q Consensus       364 ~c~a~n  369 (591)
                      .|.+.+
T Consensus        87 yCA~~~   92 (108)
T d1jhll_          87 ICQQHN   92 (108)
T ss_dssp             EEEECS
T ss_pred             EEeeCC
Confidence            997654

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.23  E-value=9.5e-06  Score=57.01  Aligned_cols=71  Identities=20%  Similarity=0.362  Sum_probs=52.3

Q ss_pred             ccccceeccccEEEEEEEcCCCCCeeEEecC--CccC------------CCCCceEEEEeCCeEEEEEcceecccceEEE
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      +..+.+..|++++|.|.........+.|++.  +...            ....++.....+....|.|.+++++|++.|.
T Consensus         8 p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~Yy   87 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYF   87 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEE
Confidence            3445678999999999987665567899873  2111            1134556666677889999999999999999


Q ss_pred             EEEEe
Q psy12425        365 CRAVN  369 (591)
Q Consensus       365 c~a~n  369 (591)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1mexl1          88 CQQYN   92 (107)
T ss_dssp             EEECS
T ss_pred             EeECC
Confidence            98643

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.8e-06  Score=62.54  Aligned_cols=71  Identities=17%  Similarity=0.185  Sum_probs=49.1

Q ss_pred             CceeeeecCCeEEEEEEeccCCCc---eEEEEECC--EE---e----------ecCCc--eeEEEeCCeEEEEEcccCCC
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPM---EVSLTKNG--RV---V----------QSDDR--FKFTVLDDYIIIFIKEIRKE   61 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~---~v~W~~~~--~~---~----------~~~~~--~~~~~~~~~~~l~i~~~~~~   61 (591)
                      |..+.+.+|++|+|.|.+......   .+.|+|..  +.   +          ....+  ......++...|.|.+++.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            778899999999999998643222   58899842  11   1          00011  11223445689999999999


Q ss_pred             CceEEEEEEEc
Q psy12425         62 DAGDYTVNLSN   72 (591)
Q Consensus        62 d~g~Y~c~~~n   72 (591)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998754

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=6.1e-06  Score=59.85  Aligned_cols=77  Identities=21%  Similarity=0.408  Sum_probs=55.9

Q ss_pred             CCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecC--CccCC---------C-------------CCceEEE-EeCC
Q psy12425        292 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREIT---------P-------------SARHHIF-AEGD  346 (591)
Q Consensus       292 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~~---------~-------------~~~~~~~-~~~~  346 (591)
                      +|.+...|..+.+.+|++++|.|.+.+.....+.|++.  +..+.         .             ..++... ..+.
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            36667777888899999999999998877778999872  22110         0             0122222 3345


Q ss_pred             eEEEEEcceecccceEEEEEEE
Q psy12425        347 TYTLIINSVYGVDADEYVCRAV  368 (591)
Q Consensus       347 ~~~l~i~~~~~~d~g~y~c~a~  368 (591)
                      .++|+|.+++++|+|.|.|.+.
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEe
Confidence            6789999999999999999875

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.22  E-value=9.4e-06  Score=57.46  Aligned_cols=72  Identities=17%  Similarity=0.289  Sum_probs=53.5

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEecCC--cc------------CCCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKGS--RE------------ITPSARHHIFAEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      .+..+.+.+|+.++|.|...+.....+.|++..  ..            .....++....++....|.|.+++++|++.|
T Consensus         9 sP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Y   88 (109)
T d1bwwa_           9 SPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATY   88 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceE
Confidence            344566889999999999977666678898721  11            1123455666677788999999999999999


Q ss_pred             EEEEEe
Q psy12425        364 VCRAVN  369 (591)
Q Consensus       364 ~c~a~n  369 (591)
                      .|.+..
T Consensus        89 yCA~~~   94 (109)
T d1bwwa_          89 YCQQYQ   94 (109)
T ss_dssp             EEEECS
T ss_pred             EEeecC
Confidence            998653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.21  E-value=6.5e-06  Score=59.51  Aligned_cols=70  Identities=14%  Similarity=0.223  Sum_probs=50.3

Q ss_pred             ceeeeecCCeEEEEEEeccCC--CceEEEEEC--CE-------------Eee----cCCceeEEEe--CCeEEEEEcccC
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GR-------------VVQ----SDDRFKFTVL--DDYIIIFIKEIR   59 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~-------------~~~----~~~~~~~~~~--~~~~~l~i~~~~   59 (591)
                      ..+++.+|++++|.|.+.|..  ...+.|||-  |+             ...    ...|+.+...  .+...|.|.+++
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            468889999999999998743  457899882  21             111    1235555543  345789999999


Q ss_pred             CCCceEEEEEEEc
Q psy12425         60 KEDAGDYTVNLSN   72 (591)
Q Consensus        60 ~~d~g~Y~c~~~n   72 (591)
                      ++|++.|.|.+..
T Consensus        89 ~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          89 KQDIATYYCALWE  101 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeeeC
Confidence            9999999998753

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.20  E-value=1.2e-06  Score=62.73  Aligned_cols=72  Identities=10%  Similarity=0.126  Sum_probs=49.2

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEECC--EE---e----------e-c-CCceeEE-EeCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG--RV---V----------Q-S-DDRFKFT-VLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~~--~~---~----------~-~-~~~~~~~-~~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++++|.|.... ....+.|||-.  +.   |          . . ..+.... .......|.|.+++++|+
T Consensus         5 P~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   83 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHT   83 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTC
T ss_pred             CCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccc
Confidence            77899999999999999753 34678999832  11   1          0 0 0111111 122346899999999999


Q ss_pred             eEEEEEEEcCC
Q psy12425         64 GDYTVNLSNSS   74 (591)
Q Consensus        64 g~Y~c~~~n~~   74 (591)
                      |.|.|.+....
T Consensus        84 a~YyCA~~~~~   94 (112)
T d2cdeb1          84 SQYLCASSENI   94 (112)
T ss_dssp             SEEEEEEECSS
T ss_pred             ccEEEEEecCC
Confidence            99999887544

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.20  E-value=5.7e-06  Score=57.08  Aligned_cols=66  Identities=11%  Similarity=-0.021  Sum_probs=48.1

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      .|..|++|+|.|... .+...+.|+|+|...... +......+....+.|..+...|+|.|+|.....
T Consensus        16 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          16 TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERR-LPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEE-EECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             cccCCCeEEEEECCC-CCccEEEEEECCCccccE-EEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            578999999999875 567889999998633211 111223444567788889999999999986544

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.1e-06  Score=60.02  Aligned_cols=84  Identities=11%  Similarity=-0.039  Sum_probs=54.6

Q ss_pred             CCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccE-EEEeeecCCceeeecCcccCCcEEEEEEEEcCC
Q psy12425        192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQ-RVNVAICAPSQINIPNLIEGRQYEFRVYAQNEA  270 (591)
Q Consensus       192 ~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~y~c~a~n~~  270 (591)
                      +|.++.+..... ...|+|.+|..+++. ...|.+.........|. ...........+.+.+|.++..|.|+++|.|..
T Consensus         3 ~P~nv~v~s~n~-~~~L~W~pP~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~n~~   80 (98)
T d1fyhb1           3 TPTNVTIESYNM-NPIVYWEYQIMPQVP-VFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVGQ   80 (98)
T ss_dssp             CCEEEEEECBSS-CCEEEEECCCCSSCC-EEEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEEETT
T ss_pred             cCCceEEEEeCC-cEEEEECCCCCCCCC-ceeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEEcCC
Confidence            456666665544 456999998766653 44444433333333333 333333344677889999999999999999999


Q ss_pred             CCCCCCC
Q psy12425        271 GLSLPSS  277 (591)
Q Consensus       271 g~~~~s~  277 (591)
                      |.+.++.
T Consensus        81 g~S~ws~   87 (98)
T d1fyhb1          81 KESAYAK   87 (98)
T ss_dssp             EECCCEE
T ss_pred             cccCCcc
Confidence            8877654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=1.4e-05  Score=56.16  Aligned_cols=72  Identities=18%  Similarity=0.275  Sum_probs=53.2

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      .|..+.+.+|++++|.|.........+.|++.  +..            -....++....++...+|.|.++.++|++.|
T Consensus         7 ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1d5il1           7 SPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEE
Confidence            34556678999999999987766667889863  211            0112356666677788999999999999999


Q ss_pred             EEEEEe
Q psy12425        364 VCRAVN  369 (591)
Q Consensus       364 ~c~a~n  369 (591)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1d5il1          87 YCLQYD   92 (107)
T ss_dssp             EEEECS
T ss_pred             Eeeecc
Confidence            997644

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=1.2e-05  Score=56.49  Aligned_cols=68  Identities=18%  Similarity=0.340  Sum_probs=51.3

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecC--CccC------------CCCCceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKG--SREI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      .+.+.+|+.++|.|...+.....+.|++.  +...            ....++....++....|.|.+++++|++.|.|.
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence            35578999999999998766667999863  2110            123456666777788999999999999999997


Q ss_pred             EE
Q psy12425        367 AV  368 (591)
Q Consensus       367 a~  368 (591)
                      +.
T Consensus        89 ~~   90 (106)
T d1lk3l1          89 QS   90 (106)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.3e-05  Score=57.83  Aligned_cols=96  Identities=16%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             CCCCCCCCeEEeecCCeEEEEEecCCCCC-----CcceEEEEEEeeecCCCccEEEEee-ecCCceeeecCcccCCcEEE
Q psy12425        189 KPSPPGIPVVTQVGGDFVNLSWDKPLDDG-----GSRIQGYWIDKHEVGSDAWQRVNVA-ICAPSQINIPNLIEGRQYEF  262 (591)
Q Consensus       189 ~p~~~~~~~~~~~~~~~v~l~w~~~~~~~-----~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~y  262 (591)
                      .|.+|.++.+. ...+.+.|+|..|...+     ...+..|.+.++..+...+...... ......+.+.+|.++..|.|
T Consensus         5 kP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~   83 (114)
T d2gysa2           5 QPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVA   83 (114)
T ss_dssp             CCCCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEEE
T ss_pred             cCCcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEEEE
Confidence            57788888875 45678999999985433     2245679999888766544333322 23445788999999999999


Q ss_pred             EEEEEcCCCCC---CCCCCcceEEEc
Q psy12425        263 RVYAQNEAGLS---LPSSASNSVQIK  285 (591)
Q Consensus       263 ~c~a~n~~g~~---~~s~~~~~~~~~  285 (591)
                      +++|.+..|.+   .+|..+..+...
T Consensus        84 rVRa~~~~g~~~~g~wS~WS~~v~~~  109 (114)
T d2gysa2          84 RVRTRLAPGSRLSGRPSKWSPEVCWD  109 (114)
T ss_dssp             EEEEEECTTSSCCBCCCCCCCCEEEE
T ss_pred             EEEEEeCCCCCCCCCccCCcCCEeee
Confidence            99999988763   345555555543

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=2e-05  Score=56.22  Aligned_cols=74  Identities=19%  Similarity=0.326  Sum_probs=51.8

Q ss_pred             eeccccceeccccEEEEEEEcCC-CCCeeEEecC--CccC-------------CCCCceEEEEe--CCeEEEEEcceecc
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGC-PKPTISWLKG--SREI-------------TPSARHHIFAE--GDTYTLIINSVYGV  358 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~--~~~~-------------~~~~~~~~~~~--~~~~~l~i~~~~~~  358 (591)
                      ..|..+.+.+|+.++|.|...+. ....+.|++.  +...             ....++.+..+  +...+|.|.+++++
T Consensus         4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   83 (114)
T d3bp5a1           4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN   83 (114)
T ss_dssp             EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGG
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcC
Confidence            34556778999999999998653 3456889872  2111             12234555443  34578999999999


Q ss_pred             cceEEEEEEEeC
Q psy12425        359 DADEYVCRAVNK  370 (591)
Q Consensus       359 d~g~y~c~a~n~  370 (591)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (114)
T d3bp5a1          84 DSGIYLCGAISL   95 (114)
T ss_dssp             GCEEEEEEEECS
T ss_pred             CCeEEEEEEEeC
Confidence            999999988654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.14  E-value=1.1e-05  Score=56.38  Aligned_cols=70  Identities=23%  Similarity=0.409  Sum_probs=51.2

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecC--CccC------------CCCCceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKG--SREI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      .+.+.+|++++|+|.........+.|++.  +...            ....+.....+.....|.|.+++++|++.|.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            34578899999999987655567899873  2111            112345555667778999999999999999998


Q ss_pred             EEeC
Q psy12425        367 AVNK  370 (591)
Q Consensus       367 a~n~  370 (591)
                      +...
T Consensus        87 ~~~~   90 (103)
T d8faba1          87 AWDN   90 (103)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            7543

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.5e-05  Score=56.90  Aligned_cols=74  Identities=19%  Similarity=0.298  Sum_probs=53.9

Q ss_pred             EeeccccceeccccEEEEEEEcCC-CCCeeEEecCC--ccC------------------CCCCceEEEEeCCeEEEEEcc
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGC-PKPTISWLKGS--REI------------------TPSARHHIFAEGDTYTLIINS  354 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~~--~~~------------------~~~~~~~~~~~~~~~~l~i~~  354 (591)
                      ...|....+..|++++|.|..... ....+.|++..  ...                  ....++.....+....|+|.+
T Consensus         4 ~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~   83 (114)
T d1akjd_           4 RVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSD   83 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESS
T ss_pred             eECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEcc
Confidence            445567788999999999998654 34568998722  110                  112345556666778999999


Q ss_pred             eecccceEEEEEEEe
Q psy12425        355 VYGVDADEYVCRAVN  369 (591)
Q Consensus       355 ~~~~d~g~y~c~a~n  369 (591)
                      ++++|+|.|.|.+..
T Consensus        84 l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          84 FRRENEGYYFCSALS   98 (114)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCCCCCEEEeEeEcC
Confidence            999999999999864

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.9e-06  Score=63.60  Aligned_cols=82  Identities=12%  Similarity=-0.033  Sum_probs=61.9

Q ss_pred             CCCCCeEEeecCCeEEEEEecCCCCCCcceEEEEEEeeecCCCccEE--------------E---------EeeecCCce
Q psy12425        192 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQR--------------V---------NVAICAPSQ  248 (591)
Q Consensus       192 ~~~~~~~~~~~~~~v~l~w~~~~~~~~~~~~~y~~~~~~~~~~~~~~--------------~---------~~~~~~~~~  248 (591)
                      .|..+.+...+.++|.|+|.+|...++..+.+|.|.|++.+...+..              .         .........
T Consensus         4 ~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (125)
T d2dtge3           4 ELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPG   83 (125)
T ss_dssp             CBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCE
T ss_pred             CCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccCE
Confidence            45677888899999999999987666668999999987754322111              1         011123467


Q ss_pred             eeecCcccCCcEEEEEEEEcCCCCC
Q psy12425        249 INIPNLIEGRQYEFRVYAQNEAGLS  273 (591)
Q Consensus       249 ~~i~~l~~~~~~~y~c~a~n~~g~~  273 (591)
                      +.|.+|.+.+.|.|+++|.|..|..
T Consensus        84 ~~l~~L~p~T~Y~~~V~A~n~~G~~  108 (125)
T d2dtge3          84 WLMRGLKPWTQYAIFVKTLVTFSDE  108 (125)
T ss_dssp             EEECSCCSSCBCCBEEEECCCCCSS
T ss_pred             EEECCCccCCEEEEEEEEEeCCCcc
Confidence            8999999999999999999998864

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.2e-06  Score=63.59  Aligned_cols=76  Identities=20%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             ecCceEEEEecCCCCCC-----CcceeeEEEEEEecCCCceEEEEe-ecCcceEEEcCCcCCcEEEEEEEEEccCCCCCC
Q psy12425        101 ITKHTCTLHWNPPKYDG-----GLKVTHYVVERRDISMPHWICIST-TCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPP  174 (591)
Q Consensus       101 ~~~~~~~l~w~~p~~~~-----~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~  174 (591)
                      ....++.|+|.+|..+.     +..+..|.+..   .+..+..... ......+.+.+|.+++.|.|+|+|.|..|.+..
T Consensus        23 ~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~---~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~v~V~A~n~~G~s~~   99 (117)
T d2cspa1          23 VTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA---KGQRVAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVD   99 (117)
T ss_dssp             SSTTEEEEEEECCCCCTTSCSSSSCEEEEEEES---SSSEEEEECCTTCSEEEEESHHHHHHTCSCBEEEEEESSCCCCC
T ss_pred             cCCCEEEEEEcCCCccccCcccccceEEEEEEe---ecccceeeeeeccceeeeeccCCCCCcEEEEEEEEEcCCCcCCC
Confidence            34568999999886432     23455565532   1222222222 344567889999999999999999999999887


Q ss_pred             CCccC
Q psy12425        175 LEGIN  179 (591)
Q Consensus       175 ~~~~~  179 (591)
                      +....
T Consensus       100 S~~v~  104 (117)
T d2cspa1         100 SAVAA  104 (117)
T ss_dssp             CSCBC
T ss_pred             CCCEE
Confidence            75543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.10  E-value=2.3e-05  Score=55.56  Aligned_cols=68  Identities=21%  Similarity=0.345  Sum_probs=50.5

Q ss_pred             cceeccccEEEEEEEcCCC--CCeeEEecCCcc--------------CCCCCceEEEEeCCeEEEEEcceecccceEEEE
Q psy12425        302 ANAIQNHNAQFQCTITGCP--KPTISWLKGSRE--------------ITPSARHHIFAEGDTYTLIINSVYGVDADEYVC  365 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p--~~~v~W~~~~~~--------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c  365 (591)
                      +.+.+|++++|.|...+..  ...+.|++....              .....++....++....|.|.+++.+|++.|.|
T Consensus        10 ~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyC   89 (114)
T d2rhea_          10 ASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYC   89 (114)
T ss_dssp             EEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEE
Confidence            4577899999999986543  456889873211              112335666667778899999999999999999


Q ss_pred             EEEe
Q psy12425        366 RAVN  369 (591)
Q Consensus       366 ~a~n  369 (591)
                      .+..
T Consensus        90 A~~~   93 (114)
T d2rhea_          90 AAWN   93 (114)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            9764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.09  E-value=1.7e-05  Score=55.91  Aligned_cols=71  Identities=17%  Similarity=0.282  Sum_probs=52.6

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEecC--CccC------------CCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREI------------TPSARHHIFAEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      .|..+.+.+|+.++|.|.........+.|++.  +...            ....++....++....|.|.+++++|+|.|
T Consensus         7 sP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Y   86 (109)
T d1mqkl_           7 TPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSY   86 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeE
Confidence            34556678899999999987665667999873  2110            112345555667788999999999999999


Q ss_pred             EEEEE
Q psy12425        364 VCRAV  368 (591)
Q Consensus       364 ~c~a~  368 (591)
                      .|.+.
T Consensus        87 yCA~~   91 (109)
T d1mqkl_          87 YCQHH   91 (109)
T ss_dssp             EEEEC
T ss_pred             EEeee
Confidence            99875

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.8e-06  Score=58.47  Aligned_cols=82  Identities=11%  Similarity=0.025  Sum_probs=53.8

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceE-EEEeCCeEEEEEcceecccceEEEEEEEe
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH-IFAEGDTYTLIINSVYGVDADEYVCRAVN  369 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~c~a~n  369 (591)
                      ++|.+...+.. .+..|++|+|.|... .+...+.|++++.......... ....+....+.|.+++..|+|.|.|...+
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            46777766554 478899999999865 3456888988764321111100 11112233689999999999999999988


Q ss_pred             CCcce
Q psy12425        370 KGGVK  374 (591)
Q Consensus       370 ~~g~~  374 (591)
                      .....
T Consensus        84 ~~~~S   88 (99)
T d1ucta1          84 GHYRF   88 (99)
T ss_dssp             TTTEE
T ss_pred             CCccc
Confidence            65533

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.09  E-value=1.6e-05  Score=56.10  Aligned_cols=70  Identities=16%  Similarity=0.291  Sum_probs=50.9

Q ss_pred             ccccceeccccEEEEEEEcCC-CCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425        299 LRNANAIQNHNAQFQCTITGC-PKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~-p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      |..+.+.+|+.++|.|..... ....+.|++.  +..            .....++.....+....|.|.++.++|+|.|
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~Y   87 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVY   87 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEE
Confidence            345567899999999998654 3446889873  211            1123355566667788999999999999999


Q ss_pred             EEEEE
Q psy12425        364 VCRAV  368 (591)
Q Consensus       364 ~c~a~  368 (591)
                      .|.+.
T Consensus        88 yCa~~   92 (108)
T d2fx7l1          88 YCQQY   92 (108)
T ss_dssp             EEEEC
T ss_pred             eeecC
Confidence            99874

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=4.1e-05  Score=48.00  Aligned_cols=81  Identities=19%  Similarity=0.227  Sum_probs=54.4

Q ss_pred             eeeecCCeEEEEEEecc-CCCceEEEEE-CCE---EeecCCce--eEEEeCC--eEEEEEcccCCCCceEEEEEEEcCCe
Q psy12425          5 LYIPEGDNTKVKIFYAG-DQPMEVSLTK-NGR---VVQSDDRF--KFTVLDD--YIIIFIKEIRKEDAGDYTVNLSNSSG   75 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~-~p~~~v~W~~-~~~---~~~~~~~~--~~~~~~~--~~~l~i~~~~~~d~g~Y~c~~~n~~g   75 (591)
                      -.+-.|+.+.|.|.+.- ...|.|+|-| +|+   ++......  .....++  -+.|.+..+-++|.|.|+|.|.-..|
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            46789999999999964 4578999987 342   22222111  1111222  26789999999999999999976665


Q ss_pred             ee-EEEEEEEE
Q psy12425         76 SV-SGTFTINI   85 (591)
Q Consensus        76 ~~-~~~~~l~v   85 (591)
                      .. +.++++.|
T Consensus        93 vieSHSvti~V  103 (104)
T d1xaua_          93 VINSHSVTIHV  103 (104)
T ss_dssp             EEECCCEEEEE
T ss_pred             heecceEEEEe
Confidence            54 44565554

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=9.1e-06  Score=55.69  Aligned_cols=78  Identities=9%  Similarity=0.055  Sum_probs=53.3

Q ss_pred             eecCCCeEEEEEeeeccCCCeEEEeeCCeEeeeccceEEEecCCeeEEEEeccCCCcceeEEEEEEcCCCcc--ceEEEE
Q psy12425        399 YFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD--SAIVKI  476 (591)
Q Consensus       399 ~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~a~n~~g~~--~~~~~~  476 (591)
                      .+..|.+|+|.|... .....+.|+++|........ ..........+.|.++...|+|.|+|...+..+.+  +..+.|
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL   91 (95)
T d1olla1          14 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL   91 (95)
T ss_dssp             EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred             cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEE
Confidence            467899999999864 34567888998864432111 11112346789999999999999999988765543  444444


Q ss_pred             Ee
Q psy12425        477 QI  478 (591)
Q Consensus       477 ~v  478 (591)
                      .|
T Consensus        92 ~V   93 (95)
T d1olla1          92 VV   93 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=1.7e-06  Score=61.73  Aligned_cols=83  Identities=16%  Similarity=0.163  Sum_probs=54.8

Q ss_pred             CCCCCCCCcc-eEEecCceEEEEecCCCCCCCcceeeEEEEEEecCC----Cce--EEEEe--ecCcceEEEcCCcCCcE
Q psy12425         88 LPGPPIGPLD-VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISM----PHW--ICIST--TCHDTTFIVQGLTEGQE  158 (591)
Q Consensus        88 ~p~~p~~~~~-~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~----~~~--~~~~~--~~~~~~~~i~~l~~~~~  158 (591)
                      +|++|.. +. +......+++++|.++. +++.++ .|.+.+.....    ..+  .....  ......+.+.+|.+++.
T Consensus         4 PP~~P~~-v~~i~~~~~~sv~~sW~p~~-d~~~~~-~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~   80 (107)
T d1cd9b1           4 PPASPSN-LSCLMHLTTNSLVCQWEPGP-ETHLPT-SFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQY   80 (107)
T ss_dssp             CCCCCEE-EEEEEETTTTEEEEEEECCS-CCSSCC-EEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSC
T ss_pred             ccCCCcC-CEEEEecCCCEEEEEEcCCC-CCCCCc-ceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCce
Confidence            4555555 33 34556789999999775 555554 46655544321    112  22222  23456788899999999


Q ss_pred             EEEEEEEEccCCCCC
Q psy12425        159 YLFHVMAVNENGMGP  173 (591)
Q Consensus       159 y~~~~~a~n~~g~~~  173 (591)
                      |.|++.|.|..|.+.
T Consensus        81 Y~frV~A~N~~G~s~   95 (107)
T d1cd9b1          81 MAIWVQAENMLGSSE   95 (107)
T ss_dssp             EEEEEEEEETTEEEE
T ss_pred             EEEEEEEEeCCcccc
Confidence            999999999999864

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.06  E-value=7.4e-06  Score=58.60  Aligned_cols=75  Identities=17%  Similarity=0.316  Sum_probs=52.2

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEecCC--ccC------------CCCCceEEE--EeCCeEEEEEcceecccce
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKGS--REI------------TPSARHHIF--AEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~--~~~~~~~l~i~~~~~~d~g  361 (591)
                      .+..+.+.+|+.++|.|...+.....+.|++..  ...            ....+....  ..+...+|.|.++..+|+|
T Consensus         6 ~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg   85 (113)
T d2bnqd1           6 IPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSA   85 (113)
T ss_dssp             SSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             eCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCc
Confidence            345566789999999999987766779998732  110            001122222  2345679999999999999


Q ss_pred             EEEEEEEeCCc
Q psy12425        362 EYVCRAVNKGG  372 (591)
Q Consensus       362 ~y~c~a~n~~g  372 (591)
                      .|.|.+....+
T Consensus        86 ~YyCa~~~~~~   96 (113)
T d2bnqd1          86 TYLCAVRPTSG   96 (113)
T ss_dssp             EEEEEEEESSS
T ss_pred             EEeEeEecCCC
Confidence            99999876543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.05  E-value=9.2e-06  Score=57.14  Aligned_cols=72  Identities=15%  Similarity=0.250  Sum_probs=53.5

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceecccceE
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  362 (591)
                      ..|..+.+.+|+.++|.|.........+.|++.  +..            .....++.....+...+|.|.+++++|+|.
T Consensus         6 QsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d3cx5k1           6 QTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIAT   85 (107)
T ss_dssp             EESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSE
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCc
Confidence            344567788999999999987776667999873  211            112234555566677899999999999999


Q ss_pred             EEEEEE
Q psy12425        363 YVCRAV  368 (591)
Q Consensus       363 y~c~a~  368 (591)
                      |.|.+.
T Consensus        86 YyCa~~   91 (107)
T d3cx5k1          86 YFCQHH   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEeeeC
Confidence            999763

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.7e-05  Score=54.22  Aligned_cols=65  Identities=9%  Similarity=0.044  Sum_probs=44.4

Q ss_pred             eecCCeEEEEEEecc-CCCceEEEEECCEEeecCCceeEEEeCCe-----EEEEEcccCCCCceEEEEEEEcCC
Q psy12425          7 IPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDY-----IIIFIKEIRKEDAGDYTVNLSNSS   74 (591)
Q Consensus         7 v~~G~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~l~i~~~~~~d~g~Y~c~~~n~~   74 (591)
                      ...|+.++|.|.+.| .|.+.|.|++||+.+............+.     +.|.|.   ..+...|+|.+....
T Consensus        13 ~~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~   83 (95)
T d1dr9a2          13 IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGH   83 (95)
T ss_dssp             CSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETT
T ss_pred             cCCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecC
Confidence            346888999999998 79999999999988865432222211111     345553   345678999997654

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.03  E-value=1.1e-05  Score=57.71  Aligned_cols=74  Identities=19%  Similarity=0.339  Sum_probs=52.0

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecCCcc--C------------CCCCceEEE--EeCCeEEEEEcceecccc
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE--I------------TPSARHHIF--AEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~--~------------~~~~~~~~~--~~~~~~~l~i~~~~~~d~  360 (591)
                      ..|..+.+.+|+.++|.|.........+.|++....  .            ....++...  ......+|.|.+++.+|+
T Consensus         5 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Ds   84 (114)
T d2cdea1           5 QSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDS   84 (114)
T ss_dssp             EECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGC
T ss_pred             eeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhC
Confidence            344566788999999999998777778999873211  0            001122222  223466899999999999


Q ss_pred             eEEEEEEEeC
Q psy12425        361 DEYVCRAVNK  370 (591)
Q Consensus       361 g~y~c~a~n~  370 (591)
                      |.|.|.+...
T Consensus        85 g~Y~Ca~~~~   94 (114)
T d2cdea1          85 ASYICVVSDR   94 (114)
T ss_dssp             SEEEEEEECS
T ss_pred             cccceeeecC
Confidence            9999998764

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.3e-05  Score=54.33  Aligned_cols=75  Identities=23%  Similarity=0.248  Sum_probs=57.2

Q ss_pred             ecCceEEEEecCCCCCCCcceeeEEEEEEecCCCceEEEEeecC----cceEEEcCCcCCcEEEEEEEEEccCCCCCCCC
Q psy12425        101 ITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCH----DTTFIVQGLTEGQEYLFHVMAVNENGMGPPLE  176 (591)
Q Consensus       101 ~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~----~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~~~  176 (591)
                      ......+|+|.+|..+++.  ..|.++++......|..+..-..    ...+.+.++..+..|.|||+|.|..|.+..+.
T Consensus        14 s~n~~~~L~W~pp~~~g~~--~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA~n~~g~S~Ws~   91 (99)
T d1y6kr1          14 AEFFHHILHWTPIPQQSES--TCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTV   91 (99)
T ss_dssp             EETTEEEEEECCCTTCCTT--CEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEEEETTEECCCEE
T ss_pred             EECCEEEEEEcCCCCcCCC--CEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEEEcCCCcCCCcc
Confidence            3455788999988866553  45999999988889998754222    22345678888999999999999999887754


Q ss_pred             c
Q psy12425        177 G  177 (591)
Q Consensus       177 ~  177 (591)
                      .
T Consensus        92 t   92 (99)
T d1y6kr1          92 T   92 (99)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.02  E-value=5.2e-05  Score=53.52  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=51.0

Q ss_pred             eccccceeccccEEEEEEEcCC----CCCeeEEecC--CccC------------CCCCceEEEEeCCeEEEEEcceeccc
Q psy12425        298 PLRNANAIQNHNAQFQCTITGC----PKPTISWLKG--SREI------------TPSARHHIFAEGDTYTLIINSVYGVD  359 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~----p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d  359 (591)
                      .|..+.+.+|++|+|.|.....    ....+.|++.  +...            ....++.....+....|+|.+++++|
T Consensus         7 sP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~D   86 (111)
T d2gsia1           7 SPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEED   86 (111)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccC
Confidence            3455668899999999987542    1224889873  2211            11345666667778899999999999


Q ss_pred             ceEEEEEEEe
Q psy12425        360 ADEYVCRAVN  369 (591)
Q Consensus       360 ~g~y~c~a~n  369 (591)
                      ++.|.|.+..
T Consensus        87 sA~YyCa~~~   96 (111)
T d2gsia1          87 AATYYCSHIR   96 (111)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEEECC
Confidence            9999997643

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=8.5e-06  Score=58.91  Aligned_cols=86  Identities=14%  Similarity=0.245  Sum_probs=54.4

Q ss_pred             ccccceeccccEEEEEEEcCCC---CCeeEEecCCcc--------------CCCCCceEEE--EeCCeEEEEEcceeccc
Q psy12425        299 LRNANAIQNHNAQFQCTITGCP---KPTISWLKGSRE--------------ITPSARHHIF--AEGDTYTLIINSVYGVD  359 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p---~~~v~W~~~~~~--------------~~~~~~~~~~--~~~~~~~l~i~~~~~~d  359 (591)
                      |..+.+.+|++++|.|......   ...+.|++....              .....+..+.  ......+|.|.+++.+|
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D   85 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   85 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence            3456688999999999975332   235778763211              0112233333  33346789999999999


Q ss_pred             ceEEEEEEEeCCcceeeeeEEEEec
Q psy12425        360 ADEYVCRAVNKGGVKSTKAELIIMT  384 (591)
Q Consensus       360 ~g~y~c~a~n~~g~~~~~~~l~v~~  384 (591)
                      +|.|.|.+..........+.|.|..
T Consensus        86 sG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          86 SGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             CEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CEEEEEEEEcCCCCceEeEEEEEEC
Confidence            9999998864433334456666654

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=2e-05  Score=56.42  Aligned_cols=71  Identities=20%  Similarity=0.286  Sum_probs=51.8

Q ss_pred             ccccceeccccEEEEEEEcCCCCCeeEEecCC--cc------------CCCCCceEEEEeCCeEEEEEcceecccceEEE
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPKPTISWLKGS--RE------------ITPSARHHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      +..+.+..|+.++|+|...+.-...+.|++..  ..            .....++.....+....|.|.+++++|++.|.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy   87 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF   87 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence            34556789999999999876655678998732  11            11223455555666789999999999999999


Q ss_pred             EEEEe
Q psy12425        365 CRAVN  369 (591)
Q Consensus       365 c~a~n  369 (591)
                      |.+..
T Consensus        88 Ca~~~   92 (119)
T d1f3rb2          88 CYQYN   92 (119)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            98654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.00  E-value=9.6e-05  Score=51.60  Aligned_cols=69  Identities=13%  Similarity=0.234  Sum_probs=47.7

Q ss_pred             eeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEE--eCCeEEEEEcccCCC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTV--LDDYIIIFIKEIRKE   61 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~--~~~~~~l~i~~~~~~   61 (591)
                      -.+++|++++|.|.+.|..  .-.+.|+|-  |+.      |.         +  ..|+.+..  ..+...|+|.+|+.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            4588999999999998854  345788772  211      11         1  13444543  234467999999999


Q ss_pred             CceEEEEEEEcC
Q psy12425         62 DAGDYTVNLSNS   73 (591)
Q Consensus        62 d~g~Y~c~~~n~   73 (591)
                      |++.|.|.....
T Consensus        90 DtAvYYCAr~~~  101 (123)
T d1mqkh_          90 DTAMYYCVRHEY  101 (123)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cccceeEEecCC
Confidence            999999976543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.00  E-value=3.1e-05  Score=54.71  Aligned_cols=74  Identities=15%  Similarity=0.277  Sum_probs=51.3

Q ss_pred             eeccccceeccccEEEEEEEcCC--CCCeeEEecC--Cc----cCCCCCceEEEEeC--CeEEEEEcceecccceEEEEE
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGC--PKPTISWLKG--SR----EITPSARHHIFAEG--DTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~--~~----~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      ..|..+....|+.++|.|...+.  ....+.|++.  +.    .+....++....+.  ...+|+|.+++++|+|.|.|.
T Consensus         4 Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   83 (112)
T d1sq2n_           4 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCG   83 (112)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             ecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEE
Confidence            33455667899999999998653  3467999973  21    22233344444332  366899999999999999998


Q ss_pred             EEeC
Q psy12425        367 AVNK  370 (591)
Q Consensus       367 a~n~  370 (591)
                      +...
T Consensus        84 ~~~~   87 (112)
T d1sq2n_          84 LGVA   87 (112)
T ss_dssp             ECBT
T ss_pred             EecC
Confidence            7644

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.00  E-value=3.7e-05  Score=53.60  Aligned_cols=68  Identities=15%  Similarity=0.293  Sum_probs=48.1

Q ss_pred             eeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------e--------ec--CCceeEEEe--CCeEEEEEcccCCCC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------V--------QS--DDRFKFTVL--DDYIIIFIKEIRKED   62 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~--------~~--~~~~~~~~~--~~~~~l~i~~~~~~d   62 (591)
                      -.|.+|++++|.|.+.|..  ...+.|+|-  |+.      +        .+  ..|+.+..+  .+...|+|.+++++|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            4689999999999998854  446789873  211      1        11  145555542  344789999999999


Q ss_pred             ceEEEEEEEc
Q psy12425         63 AGDYTVNLSN   72 (591)
Q Consensus        63 ~g~Y~c~~~n   72 (591)
                      ++.|.|....
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999997543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.99  E-value=5.3e-05  Score=52.92  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=50.2

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecCCc--cC------------CCCCceEEEEeCCeEEEEEcceecccceE
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--EI------------TPSARHHIFAEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  362 (591)
                      ..|..+.+.+|++++|.|..... ...+.|++...  ..            ....+......+...+|.|.++.++|++.
T Consensus         5 QsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   83 (104)
T d1yqvl1           5 QSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAAT   83 (104)
T ss_dssp             EESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCe
Confidence            34455668899999999997543 33578987321  10            11234455566677899999999999999


Q ss_pred             EEEEEE
Q psy12425        363 YVCRAV  368 (591)
Q Consensus       363 y~c~a~  368 (591)
                      |.|.+.
T Consensus        84 YyCa~~   89 (104)
T d1yqvl1          84 YYCQQW   89 (104)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999763

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.99  E-value=4e-05  Score=54.51  Aligned_cols=74  Identities=16%  Similarity=0.292  Sum_probs=51.8

Q ss_pred             EeeccccceeccccEEEEEEEcCC--CCCeeEEecC--Cc----cCCCCCceEEEEe--CCeEEEEEcceecccceEEEE
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGC--PKPTISWLKG--SR----EITPSARHHIFAE--GDTYTLIINSVYGVDADEYVC  365 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~--~~----~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c  365 (591)
                      ...|..+...+|++++|+|...+.  ....+.|++.  +.    .+....++....+  ....+|+|.+++++|+|.|.|
T Consensus         4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   83 (113)
T d1vesa_           4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKC   83 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEee
Confidence            344556678899999999998653  4456899872  22    1223344444433  335689999999999999999


Q ss_pred             EEEe
Q psy12425        366 RAVN  369 (591)
Q Consensus       366 ~a~n  369 (591)
                      .+..
T Consensus        84 a~~~   87 (113)
T d1vesa_          84 QAFY   87 (113)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            9854

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.98  E-value=1.8e-05  Score=55.68  Aligned_cols=68  Identities=10%  Similarity=0.244  Sum_probs=47.1

Q ss_pred             eeeeecCCeEEEEEEeccCC----CceEEEEEC--CEE---e-----------ec--CCceeEEE--eCCeEEEEEcccC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ----PMEVSLTKN--GRV---V-----------QS--DDRFKFTV--LDDYIIIFIKEIR   59 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~--~~~---~-----------~~--~~~~~~~~--~~~~~~l~i~~~~   59 (591)
                      ...|++|++|+|.|.+.|..    ...+.|+|-  |+.   |           .+  ..|+.+..  ..+...|+|.+++
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            45689999999999987742    346789973  221   1           11  23444443  2345789999999


Q ss_pred             CCCceEEEEEEE
Q psy12425         60 KEDAGDYTVNLS   71 (591)
Q Consensus        60 ~~d~g~Y~c~~~   71 (591)
                      ++|++.|.|...
T Consensus        89 ~eDsAvYyCAr~  100 (120)
T d2agjh1          89 PVDTATYYCART  100 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             eccceEEeeEec
Confidence            999999999744

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.97  E-value=3.1e-05  Score=54.34  Aligned_cols=69  Identities=17%  Similarity=0.309  Sum_probs=51.2

Q ss_pred             cceeccccEEEEEEEcCCCCCeeEEecC--CccC------------CCCCceEEEEeCCeEEEEEcceecccceEEEEEE
Q psy12425        302 ANAIQNHNAQFQCTITGCPKPTISWLKG--SREI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRA  367 (591)
Q Consensus       302 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a  367 (591)
                      +.+.+|++++|.|.........+.|++.  +...            ....+.....++...+|.|.+++++|++.|.|.+
T Consensus        10 l~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~   89 (109)
T d1w72l1          10 VSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQV   89 (109)
T ss_dssp             EEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEe
Confidence            4577899999999976655557899863  2111            1234555667777889999999999999999997


Q ss_pred             EeC
Q psy12425        368 VNK  370 (591)
Q Consensus       368 ~n~  370 (591)
                      ...
T Consensus        90 ~~~   92 (109)
T d1w72l1          90 WDS   92 (109)
T ss_dssp             EET
T ss_pred             cCC
Confidence            653

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.5e-05  Score=56.54  Aligned_cols=71  Identities=13%  Similarity=0.165  Sum_probs=46.4

Q ss_pred             ecCCCeEEEEEeeec-cCCC--eEEEeeCCeEeeeccceEEEec-C---CeeEEEEeccCCCcceeEEEEEEcCCCcc
Q psy12425        400 FDKGENVVVKIPFTG-YPKP--KITWYRDNEVIESGGHFHVETS-E---RHAILTIRDASNVDTAPYRVVAENDLGMD  470 (591)
Q Consensus       400 ~~~g~~~~l~c~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~-~---~~~~l~i~~~~~~~~g~y~c~a~n~~g~~  470 (591)
                      +.+|+.++|.|.+.+ .|.+  .+.|++++..+........... +   ....|++.-...++...|+|.|.+..+..
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~   90 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM   90 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCc
Confidence            578999999999974 6754  6899999988754322111111 1   12445565444455568999999887653

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.5e-05  Score=54.70  Aligned_cols=85  Identities=15%  Similarity=0.104  Sum_probs=55.5

Q ss_pred             CCCCCCCeEEeec-CCeEEEEEecCCCCC---CcceEEEEEEeeecCCCccEEEEeeecCCceeeecCcccCCcEEEEEE
Q psy12425        190 PSPPGIPVVTQVG-GDFVNLSWDKPLDDG---GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVY  265 (591)
Q Consensus       190 p~~~~~~~~~~~~-~~~v~l~w~~~~~~~---~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~y~c~  265 (591)
                      |.||.++.+.... ...+.|+|..|....   +.....|.+.++..+...|......     ..++..|.++..|.|+++
T Consensus         2 PdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~-----~~t~~~L~p~~~Y~v~VR   76 (94)
T d3d85d3           2 PDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFT-----DKTSATVICRKNASISVR   76 (94)
T ss_dssp             CCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEE-----SSSEEEECCCSSCEEEEE
T ss_pred             CCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEeccc-----cceEEEecCCCCEEEEEE
Confidence            6677777776554 456999999986433   2246789999998877777655442     123346788999999999


Q ss_pred             EEcCCCCCCCCCCc
Q psy12425        266 AQNEAGLSLPSSAS  279 (591)
Q Consensus       266 a~n~~g~~~~s~~~  279 (591)
                      |.+..+.+.+|+-+
T Consensus        77 a~~~~~~g~WSeWS   90 (94)
T d3d85d3          77 AQDRYYSSSWSEWA   90 (94)
T ss_dssp             EEESSSCCCCCCCE
T ss_pred             EecCCCCCCCccCc
Confidence            99988877776543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.97  E-value=3e-05  Score=54.12  Aligned_cols=66  Identities=11%  Similarity=0.161  Sum_probs=47.0

Q ss_pred             eeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------e--------ec--CCceeEEE--eCCeEEEEEcccCCCC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------V--------QS--DDRFKFTV--LDDYIIIFIKEIRKED   62 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~--------~~--~~~~~~~~--~~~~~~l~i~~~~~~d   62 (591)
                      -.|++|++++|.|.+.|..  .-.+.|+|-  |+.      +        .+  ..|+.+..  ..+...|+|++++++|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            3588999999999999854  346789873  211      1        11  24555554  3345789999999999


Q ss_pred             ceEEEEEE
Q psy12425         63 AGDYTVNL   70 (591)
Q Consensus        63 ~g~Y~c~~   70 (591)
                      ++.|.|..
T Consensus        90 tA~YYCAr   97 (120)
T d1dn0b1          90 TAVYYCAR   97 (120)
T ss_dssp             CEEEEEEE
T ss_pred             ccEEEEEe
Confidence            99999943

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.97  E-value=1.4e-05  Score=57.21  Aligned_cols=73  Identities=14%  Similarity=0.175  Sum_probs=50.2

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEecCC--ccC------------CCCCceEEE--EeCCeEEEEEcceecccce
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKGS--REI------------TPSARHHIF--AEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~--~~~~~~~l~i~~~~~~d~g  361 (591)
                      .+..+.+.+|+.++|.|.........+.|++..  ...            ....++.+.  .......|.|.+++++|+|
T Consensus         7 ~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1lp9e1           7 TEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSA   86 (115)
T ss_dssp             CCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCE
T ss_pred             CCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCc
Confidence            334566889999999999877777789998732  110            111223322  2223457999999999999


Q ss_pred             EEEEEEEeC
Q psy12425        362 EYVCRAVNK  370 (591)
Q Consensus       362 ~y~c~a~n~  370 (591)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1lp9e1          87 LYYCALFLA   95 (115)
T ss_dssp             EEEEEEEEC
T ss_pred             cceEEEEcC
Confidence            999987654

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.97  E-value=5.2e-05  Score=53.85  Aligned_cols=71  Identities=18%  Similarity=0.322  Sum_probs=50.5

Q ss_pred             eccccceeccccEEEEEEEcCC------CCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceec
Q psy12425        298 PLRNANAIQNHNAQFQCTITGC------PKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYG  357 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~------p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~  357 (591)
                      .|..+.+.+|++++|.|...+.      ....+.|++.  +..            .....++....++...+|.|.++++
T Consensus         7 ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~   86 (113)
T d1q9ra1           7 SPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQA   86 (113)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             cCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccccc
Confidence            3455667899999999987542      1234889873  211            1123455566677788999999999


Q ss_pred             ccceEEEEEEE
Q psy12425        358 VDADEYVCRAV  368 (591)
Q Consensus       358 ~d~g~y~c~a~  368 (591)
                      +|+|.|.|.+.
T Consensus        87 ~Dsa~YyCA~~   97 (113)
T d1q9ra1          87 EDLAVYYCKQS   97 (113)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CCCeEEEeccc
Confidence            99999999864

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.96  E-value=4.4e-05  Score=52.85  Aligned_cols=70  Identities=10%  Similarity=0.130  Sum_probs=49.3

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE--------------eec--CCceeEEE--eCCeEEEEEcccCCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV--------------VQS--DDRFKFTV--LDDYIIIFIKEIRKE   61 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~--------------~~~--~~~~~~~~--~~~~~~l~i~~~~~~   61 (591)
                      ...+++|++++|.|.+.|..  .-.+.|+|-  |+.              ..+  ..|+.+..  ..+...|+|++++++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            45688999999999999853  446789872  211              111  24555554  234578999999999


Q ss_pred             CceEEEEEEEcC
Q psy12425         62 DAGDYTVNLSNS   73 (591)
Q Consensus        62 d~g~Y~c~~~n~   73 (591)
                      |++.|.|.....
T Consensus        89 DtAvYyCAr~~~  100 (116)
T d7fabh1          89 DTAVYYCARNLI  100 (116)
T ss_dssp             GCEEEEEEEECS
T ss_pred             cceEEEeeeecC
Confidence            999999976433

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.96  E-value=3.1e-05  Score=55.04  Aligned_cols=70  Identities=19%  Similarity=0.299  Sum_probs=49.0

Q ss_pred             cccceeccccEEEEEEEcCCCCCeeEEecC--CccCC------------CCCceEEE--EeCCeEEEEEcceecccceEE
Q psy12425        300 RNANAIQNHNAQFQCTITGCPKPTISWLKG--SREIT------------PSARHHIF--AEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      ..+.+.+|+.++|.|.........+.|++.  +....            ...+....  ..+...+|.|.++.++|+|.|
T Consensus         8 ~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1bd2d1           8 PSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVY   87 (111)
T ss_dssp             SEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             CEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEE
Confidence            445578999999999987766667889873  22110            01222222  234577999999999999999


Q ss_pred             EEEEEe
Q psy12425        364 VCRAVN  369 (591)
Q Consensus       364 ~c~a~n  369 (591)
                      .|.+..
T Consensus        88 yCa~~~   93 (111)
T d1bd2d1          88 FCAAME   93 (111)
T ss_dssp             EEEEES
T ss_pred             EeeccC
Confidence            998764

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.7e-05  Score=53.47  Aligned_cols=67  Identities=12%  Similarity=-0.025  Sum_probs=44.5

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCEEeecCCce--eEEEeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRF--KFTVLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      .|..|++|+|.|... .....+.++|+|.........  .....+....+.|.+++.+|+|.|+|.....
T Consensus        14 ~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          14 VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            489999999999975 557788999988753222110  1111234568999999999999999987544

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.95  E-value=3.1e-05  Score=53.61  Aligned_cols=70  Identities=16%  Similarity=0.226  Sum_probs=49.3

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee-----------cCCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ-----------SDDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      .-.+.+|++++|.|.+.|..  .-.+.|+|-  |+.      |.           ..+|+.+..+  .+...|+|.+++.
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            45689999999999998853  346789872  211      11           1244555542  3446799999999


Q ss_pred             CCceEEEEEEEcC
Q psy12425         61 EDAGDYTVNLSNS   73 (591)
Q Consensus        61 ~d~g~Y~c~~~n~   73 (591)
                      +|++.|.|.....
T Consensus        89 eDtAvYYCA~~~~  101 (117)
T d1iqdb1          89 DDTAVYYCAVPDP  101 (117)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             CcceEEEEeEcCC
Confidence            9999999986543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.95  E-value=3.3e-05  Score=54.10  Aligned_cols=69  Identities=17%  Similarity=0.204  Sum_probs=49.0

Q ss_pred             ceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee-----------cCCceeEEE--eCCeEEEEEcccC
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ-----------SDDRFKFTV--LDDYIIIFIKEIR   59 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~-----------~~~~~~~~~--~~~~~~l~i~~~~   59 (591)
                      ....+++|++++|.|.+.|..  ...+.|+|-  |+.      +.           ...|+.+..  ..+...|+|.+|+
T Consensus         8 g~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~   87 (120)
T d1pg7x1           8 GPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLT   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccC
Confidence            345689999999999998753  346789872  221      11           124555554  2345789999999


Q ss_pred             CCCceEEEEEEE
Q psy12425         60 KEDAGDYTVNLS   71 (591)
Q Consensus        60 ~~d~g~Y~c~~~   71 (591)
                      ++|++.|.|...
T Consensus        88 ~eDtA~YYCAr~   99 (120)
T d1pg7x1          88 SNDSAVYYCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEeeec
Confidence            999999999864

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.5e-05  Score=47.39  Aligned_cols=59  Identities=12%  Similarity=0.105  Sum_probs=44.4

Q ss_pred             eecCCeEEEEEEeccCCC--ceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEc
Q psy12425          7 IPEGDNTKVKIFYAGDQP--MEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus         7 v~~G~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      ...|..+.|+|.......  ---.|.|+|+.|.+...-     +....+.|..  .+++|.|.|...+
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~-----~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEECG--GGCCEEEEEEEES
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC-----CCceEEEEec--CCCCceEEEEEcC
Confidence            467899999999976432  356899999999876321     3446778875  7799999999753

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.94  E-value=1.8e-05  Score=54.03  Aligned_cols=68  Identities=10%  Similarity=-0.013  Sum_probs=47.4

Q ss_pred             eeeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEE-EeCCeEEEEEcccCCCCceEEEEEEEcC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFT-VLDDYIIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      -.|..|++|+|.|... .....+.++|+|............ ...+...+.|.+++.+|+|.|+|.....
T Consensus        11 ~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          11 PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            4589999999999975 567789999987532111001111 1123467999999999999999987543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.94  E-value=8.1e-06  Score=58.63  Aligned_cols=71  Identities=14%  Similarity=0.244  Sum_probs=47.8

Q ss_pred             ccccceeccccEEEEEEEcCCCCCeeEEecC--CccCC-------C------CCc--eEEEEeCCeEEEEEcceecccce
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREIT-------P------SAR--HHIFAEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~~-------~------~~~--~~~~~~~~~~~l~i~~~~~~d~g  361 (591)
                      +..+.+.+|++++|.|.........+.|++.  +....       .      ..+  ......+...+|.|.++.++|+|
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccc
Confidence            3456688999999999987666667889872  21100       0      011  11112334558999999999999


Q ss_pred             EEEEEEEe
Q psy12425        362 EYVCRAVN  369 (591)
Q Consensus       362 ~y~c~a~n  369 (591)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (115)
T d1i9ea_          87 VYFCAVSG   94 (115)
T ss_dssp             EEEEEEEE
T ss_pred             eecccccC
Confidence            99998764

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.94  E-value=7e-05  Score=52.55  Aligned_cols=69  Identities=14%  Similarity=0.196  Sum_probs=50.1

Q ss_pred             ccceeccccEEEEEEEcCCCC---CeeEEecC--CccC------------CCCCceEEEEeCCeEEEEEcceecccceEE
Q psy12425        301 NANAIQNHNAQFQCTITGCPK---PTISWLKG--SREI------------TPSARHHIFAEGDTYTLIINSVYGVDADEY  363 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~---~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  363 (591)
                      .+.+.+|++++|.|...+...   ..+.|++.  +...            ....++.....+....|.|.++.++|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            355789999999999875322   23889862  2111            123456666777888999999999999999


Q ss_pred             EEEEEe
Q psy12425        364 VCRAVN  369 (591)
Q Consensus       364 ~c~a~n  369 (591)
                      .|.+..
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            999764

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.94  E-value=6e-05  Score=53.38  Aligned_cols=70  Identities=17%  Similarity=0.288  Sum_probs=50.8

Q ss_pred             ccceeccccEEEEEEEcCC--CCCeeEEecC--Cc------------cCCCCCceEEEEeCCeEEEEEcceecccceEEE
Q psy12425        301 NANAIQNHNAQFQCTITGC--PKPTISWLKG--SR------------EITPSARHHIFAEGDTYTLIINSVYGVDADEYV  364 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~--~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  364 (591)
                      .+.+.+|++++|.|...+.  ....+.|++.  +.            ......++....++...+|.|.+++++|++.|.
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY   88 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceE
Confidence            3557899999999997653  2345889863  11            111234566667777889999999999999999


Q ss_pred             EEEEeC
Q psy12425        365 CRAVNK  370 (591)
Q Consensus       365 c~a~n~  370 (591)
                      |.+...
T Consensus        89 CA~~~~   94 (111)
T d1rzfl1          89 CGTWDS   94 (111)
T ss_dssp             EEEEET
T ss_pred             EeecCC
Confidence            987643

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.94  E-value=2e-05  Score=54.42  Aligned_cols=68  Identities=13%  Similarity=0.180  Sum_probs=47.9

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE--------------eec--CCceeEEEe--CCeEEEEEcccCCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV--------------VQS--DDRFKFTVL--DDYIIIFIKEIRKE   61 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~--------------~~~--~~~~~~~~~--~~~~~l~i~~~~~~   61 (591)
                      ...+++|++++|.|.+.|..  .-.+.|+|-  |+.              ..+  ..|+.+...  .+...|+|++++++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            34689999999999999854  346789872  211              112  235555442  34478999999999


Q ss_pred             CceEEEEEEE
Q psy12425         62 DAGDYTVNLS   71 (591)
Q Consensus        62 d~g~Y~c~~~   71 (591)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1c5db1          89 DTAIYFCTRE   98 (117)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEecc
Confidence            9999999643

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=7.9e-06  Score=56.66  Aligned_cols=69  Identities=14%  Similarity=0.193  Sum_probs=47.7

Q ss_pred             eeecCCCeEEEEEeeeccCCCeEEEeeCCeEe--eec------------cceEEE---ecCCeeEEEEeccCCCcceeEE
Q psy12425        398 AYFDKGENVVVKIPFTGYPKPKITWYRDNEVI--ESG------------GHFHVE---TSERHAILTIRDASNVDTAPYR  460 (591)
Q Consensus       398 ~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~--~~~------------~~~~~~---~~~~~~~l~i~~~~~~~~g~y~  460 (591)
                      +....|++++|.|.........+.|++.....  ...            .++...   ......+|+|.+++++|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            34578999999999887777789998754321  111            111111   0123457999999999999999


Q ss_pred             EEEEcC
Q psy12425        461 VVAEND  466 (591)
Q Consensus       461 c~a~n~  466 (591)
                      |.+.+.
T Consensus        84 C~v~~~   89 (97)
T d2nxyb1          84 CEVEDQ   89 (97)
T ss_dssp             EEETTE
T ss_pred             EEEecC
Confidence            999653

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=2.2e-05  Score=57.09  Aligned_cols=85  Identities=11%  Similarity=0.216  Sum_probs=51.0

Q ss_pred             eccccceeccccEEEEEEEcC----CCCCeeEEecCCccCC----------------C----CCceEEEE--eCCeEEEE
Q psy12425        298 PLRNANAIQNHNAQFQCTITG----CPKPTISWLKGSREIT----------------P----SARHHIFA--EGDTYTLI  351 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~----~p~~~v~W~~~~~~~~----------------~----~~~~~~~~--~~~~~~l~  351 (591)
                      .+..+.+..|+++.|.|....    .....+.|++....-.                .    ..+..+..  ..+..+|.
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence            345667889999999999743    2334789976321100                0    01222221  12335799


Q ss_pred             EcceecccceEEEEEEEeCCcce--eeeeEEEE
Q psy12425        352 INSVYGVDADEYVCRAVNKGGVK--STKAELII  382 (591)
Q Consensus       352 i~~~~~~d~g~y~c~a~n~~g~~--~~~~~l~v  382 (591)
                      |.+++..|+|.|.|.+.+..+..  .....|.|
T Consensus        85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            99999999999999998754433  33345544

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.93  E-value=4.1e-05  Score=54.15  Aligned_cols=71  Identities=18%  Similarity=0.280  Sum_probs=48.9

Q ss_pred             ccccceeccccEEEEEEEcCC----CCCeeEEecC--CccC------------CCCCceEEEEeCCeEEEEEcceecccc
Q psy12425        299 LRNANAIQNHNAQFQCTITGC----PKPTISWLKG--SREI------------TPSARHHIFAEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~----p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  360 (591)
                      |..+.+.+|+.++|.|.....    ....+.|++.  +...            ....+.....++....|.|.+++++|+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence            345567899999999987432    2234889873  2211            112344455556678999999999999


Q ss_pred             eEEEEEEEe
Q psy12425        361 DEYVCRAVN  369 (591)
Q Consensus       361 g~y~c~a~n  369 (591)
                      +.|.|.+.+
T Consensus        88 a~YyCa~~~   96 (111)
T d1j05a_          88 ATYYCQQTN   96 (111)
T ss_dssp             EEEEEEECS
T ss_pred             ccEEEeecC
Confidence            999998653

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.93  E-value=6.8e-05  Score=53.22  Aligned_cols=72  Identities=17%  Similarity=0.320  Sum_probs=51.6

Q ss_pred             cccceeccccEEEEEEEcCC---CCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceecccceE
Q psy12425        300 RNANAIQNHNAQFQCTITGC---PKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~---p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  362 (591)
                      ..+.+.+|++++|.|...+.   ....+.|++.  +..            .....++.....+....|.|.+++++|++.
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   87 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEAD   87 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEE
Confidence            34567889999999998653   2345889873  211            112334556667778899999999999999


Q ss_pred             EEEEEEeCC
Q psy12425        363 YVCRAVNKG  371 (591)
Q Consensus       363 y~c~a~n~~  371 (591)
                      |.|.+.+..
T Consensus        88 YyCa~~~~~   96 (112)
T d1lgva1          88 YYCSSYDGS   96 (112)
T ss_dssp             EEEEEECSS
T ss_pred             EEEeeecCC
Confidence            999886543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.92  E-value=4.5e-05  Score=53.49  Aligned_cols=69  Identities=22%  Similarity=0.333  Sum_probs=50.7

Q ss_pred             ccceeccccEEEEEEEcCCCCCeeEEecC--CccC------------CCCCceEEEEeCCeEEEEEcceecccceEEEEE
Q psy12425        301 NANAIQNHNAQFQCTITGCPKPTISWLKG--SREI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCR  366 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~  366 (591)
                      .+.+.+|++++|.|.........+.|++.  +...            ....++....++....|.|.+++++|++.|.|.
T Consensus         8 s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA   87 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL   87 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred             eeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEE
Confidence            45577899999999886554556889862  2110            112356666777788999999999999999998


Q ss_pred             EEe
Q psy12425        367 AVN  369 (591)
Q Consensus       367 a~n  369 (591)
                      +..
T Consensus        88 ~~~   90 (108)
T d1nfde1          88 SSY   90 (108)
T ss_dssp             EEE
T ss_pred             eec
Confidence            764

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.92  E-value=3.6e-05  Score=53.38  Aligned_cols=69  Identities=14%  Similarity=0.162  Sum_probs=48.1

Q ss_pred             CceeeeecCCeEEEEEEeccCC--CceEEEEE--CCEE---------------eec--CCceeEEEe--CCeEEEEEccc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ--PMEVSLTK--NGRV---------------VQS--DDRFKFTVL--DDYIIIFIKEI   58 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~--~~~~---------------~~~--~~~~~~~~~--~~~~~l~i~~~   58 (591)
                      +....+++|++++|.|.+.|..  ...+.|+|  .|+.               ..+  ..|+.++.+  .+...|+|.++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L   86 (117)
T d1mfah1           7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSL   86 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeeccc
Confidence            3456789999999999998843  34677876  2221               111  134455443  34478999999


Q ss_pred             CCCCceEEEEEE
Q psy12425         59 RKEDAGDYTVNL   70 (591)
Q Consensus        59 ~~~d~g~Y~c~~   70 (591)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (117)
T d1mfah1          87 TSEDSAVYYCTR   98 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEec
Confidence            999999999964

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.92  E-value=2e-05  Score=54.72  Aligned_cols=67  Identities=16%  Similarity=0.238  Sum_probs=46.9

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      ...+++|++++|.|.+.|..  ...+.|+|-  |+.      |.         +  ..|+.+..+  .+...|+|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            45689999999999998753  446789872  221      11         1  134555432  3446799999999


Q ss_pred             CCceEEEEEE
Q psy12425         61 EDAGDYTVNL   70 (591)
Q Consensus        61 ~d~g~Y~c~~   70 (591)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (115)
T d1f3dh1          89 EDSAVYYCAN   98 (115)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCcEEEEEec
Confidence            9999999964

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.92  E-value=1.8e-05  Score=54.84  Aligned_cols=68  Identities=13%  Similarity=0.167  Sum_probs=47.7

Q ss_pred             ceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------e---------ec--CCceeEEEe--CCeEEEEEcccC
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------V---------QS--DDRFKFTVL--DDYIIIFIKEIR   59 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~---------~~--~~~~~~~~~--~~~~~l~i~~~~   59 (591)
                      .+..+++|++++|.|.+.|..  .-.+.|+|-  |+.      |         .+  ..|+.+..+  .+...|+|++++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~   87 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence            456789999999999998854  346788872  211      1         11  134444432  344689999999


Q ss_pred             CCCceEEEEEE
Q psy12425         60 KEDAGDYTVNL   70 (591)
Q Consensus        60 ~~d~g~Y~c~~   70 (591)
                      ++|++.|.|.-
T Consensus        88 ~eDTAvYYCAr   98 (118)
T d2jelh1          88 SEDSAIYYCAR   98 (118)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcceeeeEEE
Confidence            99999999953

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.92  E-value=2.6e-05  Score=54.54  Aligned_cols=67  Identities=12%  Similarity=0.105  Sum_probs=47.2

Q ss_pred             eeeeecCCeEEEEEEeccCC----CceEEEEEC--CEE------eec----------CCceeEEEe--CCeEEEEEcccC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ----PMEVSLTKN--GRV------VQS----------DDRFKFTVL--DDYIIIFIKEIR   59 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~--~~~------~~~----------~~~~~~~~~--~~~~~l~i~~~~   59 (591)
                      ...|++|++++|.|.+.|..    ...+.|+|-  |+.      +..          ..|+.+..+  .+...|+|.+++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~   88 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT   88 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence            44689999999999998853    235789773  221      111          145555542  345789999999


Q ss_pred             CCCceEEEEEE
Q psy12425         60 KEDAGDYTVNL   70 (591)
Q Consensus        60 ~~d~g~Y~c~~   70 (591)
                      ++|++.|.|..
T Consensus        89 ~eDtAvYYCAr   99 (120)
T d1ai1h1          89 NEDTAMYYCSR   99 (120)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccceeEEEEEe
Confidence            99999999974

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.91  E-value=9.2e-05  Score=52.24  Aligned_cols=70  Identities=20%  Similarity=0.282  Sum_probs=49.4

Q ss_pred             ccccceeccccEEEEEEEcCCC-----CCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceeccc
Q psy12425        299 LRNANAIQNHNAQFQCTITGCP-----KPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYGVD  359 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p-----~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d  359 (591)
                      |..+.+.+|+.++|.|...+..     ..-+.|++.  |..            .....++.....+....|.|.+++++|
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD   87 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED   87 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence            4556688999999999975432     234889863  211            112244555567778899999999999


Q ss_pred             ceEEEEEEE
Q psy12425        360 ADEYVCRAV  368 (591)
Q Consensus       360 ~g~y~c~a~  368 (591)
                      ++.|.|...
T Consensus        88 sAvYYC~~~   96 (112)
T d1ncwl1          88 LGVYYCWQG   96 (112)
T ss_dssp             CEEEEEEEC
T ss_pred             CEeEEEEcC
Confidence            999999653

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.91  E-value=3.8e-05  Score=55.06  Aligned_cols=71  Identities=24%  Similarity=0.394  Sum_probs=48.0

Q ss_pred             eccccceeccccEEEEEEEcC-CCCCeeEEecCC-----ccC-----------------CCCCceEEEE--eCCeEEEEE
Q psy12425        298 PLRNANAIQNHNAQFQCTITG-CPKPTISWLKGS-----REI-----------------TPSARHHIFA--EGDTYTLII  352 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~-----~~~-----------------~~~~~~~~~~--~~~~~~l~i  352 (591)
                      .+..+.+.+|++++|.|.+.+ .....+.|++..     ..+                 ....+.....  +....+|.|
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   83 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEee
Confidence            345566889999999999876 445678998631     100                 0112222322  223558999


Q ss_pred             cceecccceEEEEEEE
Q psy12425        353 NSVYGVDADEYVCRAV  368 (591)
Q Consensus       353 ~~~~~~d~g~y~c~a~  368 (591)
                      .+++.+|+|.|.|.+.
T Consensus        84 ~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          84 MNVKPEDSDFYFCATV   99 (115)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCCCcEEEEeEc
Confidence            9999999999999875

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.90  E-value=7e-05  Score=52.23  Aligned_cols=70  Identities=19%  Similarity=0.205  Sum_probs=49.5

Q ss_pred             ceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccC
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIR   59 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~   59 (591)
                      ..-.+++|++++|.|.+.|..  .-.+.|+|-  |+.      |.         +  ..|+.+..+  .+...|+|.+++
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~   88 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR   88 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC
Confidence            355689999999999999854  346789872  211      11         1  245555543  344679999999


Q ss_pred             CCCceEEEEEEEc
Q psy12425         60 KEDAGDYTVNLSN   72 (591)
Q Consensus        60 ~~d~g~Y~c~~~n   72 (591)
                      ++|++.|.|....
T Consensus        89 ~eDtA~YYCAr~~  101 (122)
T d1vgeh1          89 PEDTAVYYCARDP  101 (122)
T ss_dssp             GGGCEEEEEEEET
T ss_pred             CCcceEEEEeecC
Confidence            9999999997653

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.90  E-value=4.2e-05  Score=54.39  Aligned_cols=70  Identities=10%  Similarity=0.067  Sum_probs=47.8

Q ss_pred             CceeeeecCCeEEEEEEeccCCCceEEEEEC--CEEe---e----c---------CCceeEEEeCCeEEEEEcccCCCCc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQPMEVSLTKN--GRVV---Q----S---------DDRFKFTVLDDYIIIFIKEIRKEDA   63 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p~~~v~W~~~--~~~~---~----~---------~~~~~~~~~~~~~~l~i~~~~~~d~   63 (591)
                      |..+.+.+|++++|.|...+.....+.|||-  |+.+   -    .         ..++.... .....|.|..++++|+
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~l~l~~~~~~ds   86 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR-VTDTELRLQVANMSQG   86 (112)
T ss_dssp             CSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEE-EETTEEEEEEESCCSC
T ss_pred             CCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccc-ccccEEEEecCCccCC
Confidence            7788999999999999987655567999983  2211   0    0         11222221 1224688888999999


Q ss_pred             eEEEEEEEc
Q psy12425         64 GDYTVNLSN   72 (591)
Q Consensus        64 g~Y~c~~~n   72 (591)
                      +.|.|.+..
T Consensus        87 a~Y~Ca~~~   95 (112)
T d1fo0b_          87 RTLYCTCSA   95 (112)
T ss_dssp             EEEEEEEES
T ss_pred             ccEEEEEec
Confidence            999998753

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.90  E-value=2.5e-05  Score=54.79  Aligned_cols=68  Identities=16%  Similarity=0.276  Sum_probs=47.5

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEE--eCCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTV--LDDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~--~~~~~~l~i~~~~~   60 (591)
                      ...+.+|++++|.|.+.|..  ...+.|+|-  |+.      +.         +  ..|+.+..  ..+...|+|+++++
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~   88 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS   88 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc
Confidence            34688999999999998743  346889872  221      11         1  13555544  23446799999999


Q ss_pred             CCceEEEEEEE
Q psy12425         61 EDAGDYTVNLS   71 (591)
Q Consensus        61 ~d~g~Y~c~~~   71 (591)
                      +|++.|.|...
T Consensus        89 eDsAvYYCA~~   99 (119)
T d1qnzh_          89 DDSAVYYCAIH   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cceeEEEEEEe
Confidence            99999999653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.89  E-value=3e-05  Score=55.31  Aligned_cols=73  Identities=14%  Similarity=0.235  Sum_probs=48.9

Q ss_pred             ccccceeccccEEEEEEEcCCCCCeeEEecC--CccC------------CCCCceEEE--EeCCeEEEEEcceecccceE
Q psy12425        299 LRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREI------------TPSARHHIF--AEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~  362 (591)
                      +..+.+.+|++++|.|...+. ...+.|++.  +...            ....+..+.  ......+|.|.++.++|+|.
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL   85 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence            345668899999999997654 346899873  2110            001122222  23346789999999999999


Q ss_pred             EEEEEEeCCc
Q psy12425        363 YVCRAVNKGG  372 (591)
Q Consensus       363 y~c~a~n~~g  372 (591)
                      |.|.+....+
T Consensus        86 YyCa~~~~~~   95 (115)
T d1ogad1          86 YLCAGAGSQG   95 (115)
T ss_dssp             EEEEEECTTS
T ss_pred             EcccccCCCC
Confidence            9998865433

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.89  E-value=6.1e-05  Score=53.51  Aligned_cols=67  Identities=12%  Similarity=0.210  Sum_probs=46.5

Q ss_pred             eeeecCCeEEEEEEeccCC----CceEEEEEC--CEE--------------eec--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQ----PMEVSLTKN--GRV--------------VQS--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p----~~~v~W~~~--~~~--------------~~~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      -.|.+|++++|.|.+.|..    ...+.|+|-  |+.              ..+  ..|+.+...  .+...|+|.++++
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            4588999999999998732    235679862  211              111  235555543  3457899999999


Q ss_pred             CCceEEEEEEE
Q psy12425         61 EDAGDYTVNLS   71 (591)
Q Consensus        61 ~d~g~Y~c~~~   71 (591)
                      +|++.|.|...
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999753

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.89  E-value=9.1e-05  Score=51.34  Aligned_cols=69  Identities=13%  Similarity=0.155  Sum_probs=48.9

Q ss_pred             ceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccC
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIR   59 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~   59 (591)
                      ....+.+|++++|.|.+.|..  .-.+.|+|-  |+.      |.         +  ..|+.+..+  .+...|+|.+|+
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~   86 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence            356789999999999999854  446889873  221      11         1  145555443  344679999999


Q ss_pred             CCCceEEEEEEE
Q psy12425         60 KEDAGDYTVNLS   71 (591)
Q Consensus        60 ~~d~g~Y~c~~~   71 (591)
                      ++|++.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (117)
T d1um5h1          87 SEDSAVYYCARS   98 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999753

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.89  E-value=8.9e-05  Score=52.49  Aligned_cols=72  Identities=17%  Similarity=0.194  Sum_probs=50.6

Q ss_pred             eeccccceeccccEEEEEEEcCC-----CCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceec
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGC-----PKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYG  357 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~-----p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~  357 (591)
                      ..|..+.+.+|+.++|.|...+.     ....+.|++.  |..            .....++.....+...+|+|.++.+
T Consensus         7 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~   86 (113)
T d1n4xl_           7 QTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA   86 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCc
Confidence            33455668899999999998542     2246889873  211            1123345555666778999999999


Q ss_pred             ccceEEEEEEE
Q psy12425        358 VDADEYVCRAV  368 (591)
Q Consensus       358 ~d~g~y~c~a~  368 (591)
                      +|++.|.|...
T Consensus        87 ~DsavYyCa~~   97 (113)
T d1n4xl_          87 EDLGIYYCFQG   97 (113)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCEEEEEEEC
Confidence            99999999654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.88  E-value=2.9e-05  Score=52.90  Aligned_cols=67  Identities=15%  Similarity=0.254  Sum_probs=47.6

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------e-----------ec--CCceeEEEe--CCeEEEEEccc
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------V-----------QS--DDRFKFTVL--DDYIIIFIKEI   58 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~-----------~~--~~~~~~~~~--~~~~~l~i~~~   58 (591)
                      ...|.+|++++|.|.+.|..  .-.+.|+|-  |+.      |           .+  ..|+.+..+  .+...|+|.+|
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            45689999999999998843  346788772  211      1           11  134455543  34578999999


Q ss_pred             CCCCceEEEEEE
Q psy12425         59 RKEDAGDYTVNL   70 (591)
Q Consensus        59 ~~~d~g~Y~c~~   70 (591)
                      +++|++.|.|.-
T Consensus        89 ~~eDTAvYYCAr  100 (109)
T d2ck0h1          89 KTEDTGIYYCVR  100 (109)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CHhHCEEEEEEE
Confidence            999999999974

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.88  E-value=8e-05  Score=53.24  Aligned_cols=69  Identities=10%  Similarity=0.254  Sum_probs=48.0

Q ss_pred             eeeecCCeEEEEEEeccCC----CceEEEEEC--CEE---e-----------ec--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQ----PMEVSLTKN--GRV---V-----------QS--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p----~~~v~W~~~--~~~---~-----------~~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      -.|++|++++|.|.+.|..    ..-+.|+|-  |+.   |           .+  ..|+.+..+  .+...|+|.++++
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            4688999999999998743    235789872  211   1           11  245555442  3447899999999


Q ss_pred             CCceEEEEEEEcC
Q psy12425         61 EDAGDYTVNLSNS   73 (591)
Q Consensus        61 ~d~g~Y~c~~~n~   73 (591)
                      +|++.|.|.....
T Consensus        90 eDtAvYYCAr~~~  102 (132)
T d1tjgh1          90 VDTATYFCAHRRG  102 (132)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             ccceEEEEEEecC
Confidence            9999999986543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.5e-06  Score=57.26  Aligned_cols=65  Identities=17%  Similarity=0.114  Sum_probs=45.9

Q ss_pred             eeecCCeEEEEEEeccCCCceEEEEECCEEeecCCceeEEEeCCeEEEEEcccCCCCceEEEEEEEc
Q psy12425          6 YIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSN   72 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~n   72 (591)
                      .|..|++|+|.|... .+...+.++|+|.......+ .....++...+.|.+++.+|+|.|+|....
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          14 VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITR-IPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHT-SCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEE-ccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            478999999999974 56778999998863211100 000112335899999999999999998753

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.8e-05  Score=54.53  Aligned_cols=67  Identities=16%  Similarity=0.428  Sum_probs=43.9

Q ss_pred             eecCCeEEEEEEecc-CC-CceEEEEECCEEeecCCceeEEEeCCe--EEEEEcccCCCCceEEEEEEEcC
Q psy12425          7 IPEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDRFKFTVLDDY--IIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         7 v~~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      +..|+.++|.|.+.| .| ...|+|.+||+.+...........++.  .......+.+++.+.|+|.+.-.
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHV   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeC
Confidence            356899999999999 34 458999999998854422222222322  22333344566777899998654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.87  E-value=4.5e-05  Score=53.00  Aligned_cols=68  Identities=10%  Similarity=0.148  Sum_probs=47.9

Q ss_pred             eeeeecCCeEEEEEEeccCCC---ceEEEEE--CCEEe--------------ec--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQP---MEVSLTK--NGRVV--------------QS--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~---~~v~W~~--~~~~~--------------~~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      +..+++|++++|.|.+.|..-   -.+.|+|  .|+.+              .+  ..|+.+..+  .+...|+|.++++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            456889999999999998643   3468976  23211              11  235555542  3457899999999


Q ss_pred             CCceEEEEEEE
Q psy12425         61 EDAGDYTVNLS   71 (591)
Q Consensus        61 ~d~g~Y~c~~~   71 (591)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1ncwh1          89 EDTATYYCAGL   99 (119)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeEe
Confidence            99999999643

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=7.9e-05  Score=50.73  Aligned_cols=75  Identities=13%  Similarity=0.100  Sum_probs=53.8

Q ss_pred             CCCeEEeeccccceeccccEEEEEEEcCCCCCeeEEecCCccCCCCCceEEEEeCCeEEEEEcceecccceEEEEEEEeC
Q psy12425        291 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK  370 (591)
Q Consensus       291 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~n~  370 (591)
                      .+|.+...+. ..+..|++|+|.|.........+.|+|++......    ....+....+.|.+++..|+|.|+|.....
T Consensus         4 PkP~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~----~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSC-SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCC-CccCCCCeEEEEEeCCCCCceEEEEEECCcccceE----EcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            4677766654 35889999999998654445578899987543221    112234457999999999999999998654

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.86  E-value=9.8e-05  Score=52.21  Aligned_cols=68  Identities=16%  Similarity=0.284  Sum_probs=48.2

Q ss_pred             cccceeccccEEEEEEEcCC-----CCCeeEEecC--Ccc------------CCCCCceEEEEeCCeEEEEEcceecccc
Q psy12425        300 RNANAIQNHNAQFQCTITGC-----PKPTISWLKG--SRE------------ITPSARHHIFAEGDTYTLIINSVYGVDA  360 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~-----p~~~v~W~~~--~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~  360 (591)
                      ..+.+.+|++++|+|...+.     ....+.|++.  |..            .....+......+....|.|.+++++|+
T Consensus         9 ~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~Ds   88 (112)
T d1mjul1           9 PSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDV   88 (112)
T ss_dssp             SEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCC
Confidence            34557789999999998653     2346889763  211            1112345555666778999999999999


Q ss_pred             eEEEEEE
Q psy12425        361 DEYVCRA  367 (591)
Q Consensus       361 g~y~c~a  367 (591)
                      +.|.|..
T Consensus        89 AvYyCa~   95 (112)
T d1mjul1          89 GVYYCLQ   95 (112)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEe
Confidence            9999954

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.86  E-value=7.6e-05  Score=51.51  Aligned_cols=69  Identities=13%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CE---------------Eeec--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GR---------------VVQS--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~---------------~~~~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      ...+++|++++|.|.+.|..  .-.+.|+|-  |+               ...+  ..|+.+..+  .+...|+|.+|++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            45689999999999999854  446788772  21               1111  244445432  3457899999999


Q ss_pred             CCceEEEEEEEc
Q psy12425         61 EDAGDYTVNLSN   72 (591)
Q Consensus        61 ~d~g~Y~c~~~n   72 (591)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (117)
T d1jpth1          89 EDTAVYYCARDT  100 (117)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCceEEEEeecC
Confidence            999999996543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.86  E-value=3.1e-05  Score=53.54  Aligned_cols=68  Identities=10%  Similarity=0.226  Sum_probs=47.5

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------e--------ecC--CceeEEE--eCCeEEEEEcccCCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------V--------QSD--DRFKFTV--LDDYIIIFIKEIRKE   61 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~--------~~~--~~~~~~~--~~~~~~l~i~~~~~~   61 (591)
                      ...+.+|++++|.|.+.|..  .-.+.|+|.  |+.      +        .+.  .|+.+..  ..+...|+|++++++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            34689999999999999853  446788873  211      1        111  2444443  334478999999999


Q ss_pred             CceEEEEEEE
Q psy12425         62 DAGDYTVNLS   71 (591)
Q Consensus        62 d~g~Y~c~~~   71 (591)
                      |++.|.|.-.
T Consensus        89 DTAvYYCAr~   98 (116)
T d1a2yb_          89 DTARYYCARE   98 (116)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEe
Confidence            9999999754

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.86  E-value=6.9e-05  Score=53.74  Aligned_cols=76  Identities=17%  Similarity=0.241  Sum_probs=52.6

Q ss_pred             eeccccceeccccEEEEEEEcCCCCCeeEEecC--CccC-----------------CCCCceEEEE-eCCeEEEEEccee
Q psy12425        297 VPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREI-----------------TPSARHHIFA-EGDTYTLIINSVY  356 (591)
Q Consensus       297 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~-----------------~~~~~~~~~~-~~~~~~l~i~~~~  356 (591)
                      ..+....+.+|++++|.|...+.....+.|++.  +..+                 ....++.... .+....|+|.++.
T Consensus         6 Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   85 (118)
T d2ij0c1           6 QHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAH   85 (118)
T ss_dssp             EECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCC
T ss_pred             EcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccc
Confidence            334456678999999999987766678999873  2110                 0122344433 2335689999999


Q ss_pred             cccceEEEEEEEeCCc
Q psy12425        357 GVDADEYVCRAVNKGG  372 (591)
Q Consensus       357 ~~d~g~y~c~a~n~~g  372 (591)
                      ++|+|.|.|.+....+
T Consensus        86 ~~Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          86 PEDSGFYVCSALAGSG  101 (118)
T ss_dssp             GGGCEEEEEEEECSSC
T ss_pred             cccCceEEEEEecCCC
Confidence            9999999999865433

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.86  E-value=3.4e-05  Score=53.07  Aligned_cols=69  Identities=16%  Similarity=0.231  Sum_probs=48.7

Q ss_pred             CceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEccc
Q psy12425          2 PNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEI   58 (591)
Q Consensus         2 p~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~   58 (591)
                      +....+.+|++++|.|.+.|..  .-.+.|.|-  |+.      |.         +  ..|+.++.+  .+...|+|.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL   86 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccccc
Confidence            3456799999999999999854  346788772  211      11         1  135555533  34478999999


Q ss_pred             CCCCceEEEEEE
Q psy12425         59 RKEDAGDYTVNL   70 (591)
Q Consensus        59 ~~~d~g~Y~c~~   70 (591)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (116)
T d1mjuh1          87 TSDDSAVYYCAN   98 (116)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEcc
Confidence            999999999964

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=5.6e-05  Score=54.39  Aligned_cols=69  Identities=12%  Similarity=0.188  Sum_probs=45.4

Q ss_pred             eeeeecCCeEEEEEEeccCCC--c-eEEEEECC--E--Ee------------ecCCceeEE--EeCCeEEEEEcccCCCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQP--M-EVSLTKNG--R--VV------------QSDDRFKFT--VLDDYIIIFIKEIRKED   62 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~--~-~v~W~~~~--~--~~------------~~~~~~~~~--~~~~~~~l~i~~~~~~d   62 (591)
                      ++.+.+|++++|.|.+.+...  . .+.|++..  .  .+            ....++++.  ...+..+|.|.+++++|
T Consensus         9 p~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   88 (118)
T d1yjdc1           9 PMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQ   88 (118)
T ss_dssp             SEEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGG
T ss_pred             CcEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCccc
Confidence            356889999999999875432  2 23455531  0  01            112334433  34556789999999999


Q ss_pred             ceEEEEEEEc
Q psy12425         63 AGDYTVNLSN   72 (591)
Q Consensus        63 ~g~Y~c~~~n   72 (591)
                      +|.|.|.+..
T Consensus        89 savYyCa~~~   98 (118)
T d1yjdc1          89 TDIYFCKIEV   98 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             CeEEEEEEec
Confidence            9999998753

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.84  E-value=3.6e-05  Score=52.95  Aligned_cols=66  Identities=15%  Similarity=0.205  Sum_probs=46.5

Q ss_pred             eeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccCCC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIRKE   61 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~~~   61 (591)
                      -.+.+|++++|.|.+.|..  ...+.|+|-  |+.      |.         +  ..|+.+...  .+...|+|++++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            4688999999999998854  446788872  211      11         1  134445432  34467999999999


Q ss_pred             CceEEEEEE
Q psy12425         62 DAGDYTVNL   70 (591)
Q Consensus        62 d~g~Y~c~~   70 (591)
                      |++.|.|..
T Consensus        90 DtAvYYCA~   98 (114)
T d1indh1          90 DTALYFCAS   98 (114)
T ss_dssp             GCEEEEEEC
T ss_pred             cccEEEECC
Confidence            999999964

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.84  E-value=0.00019  Score=50.63  Aligned_cols=73  Identities=15%  Similarity=0.296  Sum_probs=49.6

Q ss_pred             EeeccccceeccccEEEEEEEcCCCCCeeEEecC--CccC--------------C-CCCce-EEEEeCCeEEEEEcceec
Q psy12425        296 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREI--------------T-PSARH-HIFAEGDTYTLIINSVYG  357 (591)
Q Consensus       296 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~--------------~-~~~~~-~~~~~~~~~~l~i~~~~~  357 (591)
                      ...|....+.+|++++|.|...+. ...+.|++.  +...              . ...++ ..........|+|.++.+
T Consensus         5 ~Q~P~~~~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (110)
T d2aq2a1           5 TQSPRNKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATP   83 (110)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCG
T ss_pred             EEeCCeEEEcCCCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCH
Confidence            344456668899999999998653 457899873  2110              0 01122 223445567899999999


Q ss_pred             ccceEEEEEEEe
Q psy12425        358 VDADEYVCRAVN  369 (591)
Q Consensus       358 ~d~g~y~c~a~n  369 (591)
                      +|+|.|.|.+..
T Consensus        84 ~Dsa~YyCa~~~   95 (110)
T d2aq2a1          84 SQTSVYFCASGG   95 (110)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             hhCEEEEEeeCC
Confidence            999999998764

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.84  E-value=6.2e-05  Score=53.85  Aligned_cols=74  Identities=15%  Similarity=0.285  Sum_probs=50.3

Q ss_pred             eccccceeccccEEEEEEEcC-CCCCeeEEecC--CccC---------------CCCCceEEEEe--CCeEEEEEcceec
Q psy12425        298 PLRNANAIQNHNAQFQCTITG-CPKPTISWLKG--SREI---------------TPSARHHIFAE--GDTYTLIINSVYG  357 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~--~~~~---------------~~~~~~~~~~~--~~~~~l~i~~~~~  357 (591)
                      .+..+.+.+|+.++|.|.... .....+.|++.  +...               ....++.+..+  ....+|+|.+++.
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT   85 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccc
Confidence            345566889999999999754 34567899862  2111               01234444433  2346899999999


Q ss_pred             ccceEEEEEEEeCC
Q psy12425        358 VDADEYVCRAVNKG  371 (591)
Q Consensus       358 ~d~g~y~c~a~n~~  371 (591)
                      +|+|.|.|.+....
T Consensus        86 ~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          86 EDSATYYCAFTLPP   99 (116)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             cccccceeeEecCC
Confidence            99999999876543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.83  E-value=6.3e-05  Score=52.86  Aligned_cols=67  Identities=13%  Similarity=0.261  Sum_probs=47.8

Q ss_pred             eeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccCCC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIRKE   61 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~~~   61 (591)
                      -.|++|++++|.|.+.|..  .-.+.|+|-  |+.      |.         +  ..|+.+..+  .+...|+|++++++
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            4688999999999999843  456789873  211      11         1  244555443  34578999999999


Q ss_pred             CceEEEEEEE
Q psy12425         62 DAGDYTVNLS   71 (591)
Q Consensus        62 d~g~Y~c~~~   71 (591)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (124)
T d1zvya1          89 DTAIYTCGAT   98 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999764

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.83  E-value=2.5e-05  Score=54.03  Aligned_cols=67  Identities=18%  Similarity=0.318  Sum_probs=46.9

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CE------Eee---------c--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GR------VVQ---------S--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~------~~~---------~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      ...+++|++++|.|.+.|..  ...+.|+|-  |+      .|.         +  ..|+.+..+  .+...|+|.+|+.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            45689999999999998854  346889772  21      111         1  234444432  3457899999999


Q ss_pred             CCceEEEEEE
Q psy12425         61 EDAGDYTVNL   70 (591)
Q Consensus        61 ~d~g~Y~c~~   70 (591)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (118)
T d1nlbh1          89 EDTATYFCAR   98 (118)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999953

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=3.8e-05  Score=52.95  Aligned_cols=66  Identities=14%  Similarity=0.330  Sum_probs=43.2

Q ss_pred             ecCCeEEEEEEecc-CC-CceEEEEECCEEeecCCceeEEEeCCe--EEEEEcccCCCCceEEEEEEEcC
Q psy12425          8 PEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDRFKFTVLDDY--IIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         8 ~~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      ..|+.++|.|.+.| .| ...|+|.+||..+...........++.  .......+..++...|+|.+.-.
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHD   85 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeC
Confidence            46888999999999 44 458999999998865433333333332  22223334556667899998653

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=8.5e-05  Score=52.49  Aligned_cols=71  Identities=14%  Similarity=0.319  Sum_probs=47.4

Q ss_pred             ccceeccccEEEEEEEcCC--CCCeeEEecCC--cc------------CCCCCceEEE--EeCCeEEEEEcceecccceE
Q psy12425        301 NANAIQNHNAQFQCTITGC--PKPTISWLKGS--RE------------ITPSARHHIF--AEGDTYTLIINSVYGVDADE  362 (591)
Q Consensus       301 ~~~~~~g~~~~l~c~~~~~--p~~~v~W~~~~--~~------------~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~  362 (591)
                      .+.+.+|++++|.|.....  ....+.|++..  ..            .....+..+.  ...+..+|.|.+++++|+|.
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~   84 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH   84 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence            3557899999999987543  23457898721  10            0112333333  23456799999999999999


Q ss_pred             EEEEEEeCC
Q psy12425        363 YVCRAVNKG  371 (591)
Q Consensus       363 y~c~a~n~~  371 (591)
                      |.|......
T Consensus        85 Y~C~v~~~~   93 (108)
T d1hkfa_          85 YWCRIYRPS   93 (108)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEecCC
Confidence            999987543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.83  E-value=5.1e-05  Score=53.32  Aligned_cols=67  Identities=9%  Similarity=0.193  Sum_probs=45.6

Q ss_pred             eeeeecCCeEEEEEEeccCC----CceEEEEEC--CEEe--------------ecC--CceeEEEe--CCeEEEEEcccC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ----PMEVSLTKN--GRVV--------------QSD--DRFKFTVL--DDYIIIFIKEIR   59 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p----~~~v~W~~~--~~~~--------------~~~--~~~~~~~~--~~~~~l~i~~~~   59 (591)
                      ...|++|++++|.|.+.|..    ...+.|+|-  |+.+              .+.  .|+.+..+  .+...|+|++++
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~   88 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE   88 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence            34678999999999998743    235689872  2111              111  34444432  344789999999


Q ss_pred             CCCceEEEEEE
Q psy12425         60 KEDAGDYTVNL   70 (591)
Q Consensus        60 ~~d~g~Y~c~~   70 (591)
                      ++|++.|.|..
T Consensus        89 ~eDsAvYyCAr   99 (123)
T d1r0ah1          89 TADTAIYYCAQ   99 (123)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccceEEeecc
Confidence            99999999974

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.82  E-value=2.2e-05  Score=53.43  Aligned_cols=65  Identities=14%  Similarity=0.240  Sum_probs=44.5

Q ss_pred             eeecCCeEEEEEEeccC--CCceEEEEEC--CEE------e--------ecC--CceeEEEe--CCeEEEEEcccCCCCc
Q psy12425          6 YIPEGDNTKVKIFYAGD--QPMEVSLTKN--GRV------V--------QSD--DRFKFTVL--DDYIIIFIKEIRKEDA   63 (591)
Q Consensus         6 ~v~~G~~~~l~C~~~~~--p~~~v~W~~~--~~~------~--------~~~--~~~~~~~~--~~~~~l~i~~~~~~d~   63 (591)
                      .|++|++++|.|.+.|.  ....+.|+|.  |+.      |        .+.  .|+.+..+  .+...|+|.+++++|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            47899999999999874  3446789873  211      1        111  34445542  3347899999999999


Q ss_pred             eEEEEEE
Q psy12425         64 GDYTVNL   70 (591)
Q Consensus        64 g~Y~c~~   70 (591)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.82  E-value=0.00016  Score=50.23  Aligned_cols=69  Identities=14%  Similarity=0.190  Sum_probs=48.1

Q ss_pred             eeeeecCCeEEEEEEeccC--CCceEEEEEC--CEEe-----------------ecC--CceeEEEe--CCeEEEEEccc
Q psy12425          4 ALYIPEGDNTKVKIFYAGD--QPMEVSLTKN--GRVV-----------------QSD--DRFKFTVL--DDYIIIFIKEI   58 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~--p~~~v~W~~~--~~~~-----------------~~~--~~~~~~~~--~~~~~l~i~~~   58 (591)
                      .-.|++|++++|.|.+.|.  ..-.+.|+|-  |+.+                 .+.  .|+.+..+  .+...|+|.++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L   88 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTL   88 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeec
Confidence            3458899999999999874  3457789872  3211                 111  34445432  34478999999


Q ss_pred             CCCCceEEEEEEEc
Q psy12425         59 RKEDAGDYTVNLSN   72 (591)
Q Consensus        59 ~~~d~g~Y~c~~~n   72 (591)
                      +++|++.|.|....
T Consensus        89 ~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          89 RAEDTGIYYCTGIY  102 (120)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             cCCCceEEEeeEec
Confidence            99999999997543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.82  E-value=0.00015  Score=51.20  Aligned_cols=89  Identities=10%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      .-.+.+|++++|.|.+.|..  ...+.|+|-  |+.      |.         +  ..|+.+..+  .+...|.|.+|+.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            34689999999999998843  446889872  211      11         1  134444432  2346899999999


Q ss_pred             CCceEEEEEEEcCCeee--EEEEEEEEecCCCCC
Q psy12425         61 EDAGDYTVNLSNSSGSV--SGTFTINITGLPGPP   92 (591)
Q Consensus        61 ~d~g~Y~c~~~n~~g~~--~~~~~l~v~~~p~~p   92 (591)
                      +|++.|.|......+-.  -.-..|+|...-..|
T Consensus        89 eDTAvYYCAr~~~~~~d~WGqGT~VTVsSas~~p  122 (135)
T d1ieha_          89 EDTAVYYCAKYSGGALDAWGQGTQVTVSSQSEQK  122 (135)
T ss_dssp             SSCEEEEEEEBSSSSBCCCSCCEEEEECSSCCCC
T ss_pred             ccceeeEEEEecCCccceeCCCEEEEEECCCCCC
Confidence            99999999765433211  122556666543333

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.81  E-value=3.4e-05  Score=53.37  Aligned_cols=67  Identities=13%  Similarity=0.215  Sum_probs=47.3

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------e---------ec--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------V---------QS--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~---------~~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      .-.+++|+++.|.|.++|..  .-.+.|+|-  |+.      |         .+  ..|+.+..+  .+...|+|++|++
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            45678999999999999853  446789872  211      1         11  135555543  3446799999999


Q ss_pred             CCceEEEEEE
Q psy12425         61 EDAGDYTVNL   70 (591)
Q Consensus        61 ~d~g~Y~c~~   70 (591)
                      +|++.|.|..
T Consensus        89 eDTAvYYCAr   98 (117)
T d1jnhb1          89 EDSAVYSCSR   98 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999964

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.81  E-value=4.9e-05  Score=54.35  Aligned_cols=75  Identities=16%  Similarity=0.263  Sum_probs=49.4

Q ss_pred             eccccceeccccEEEEEEEcC-CCCCeeEEecC--CccCC-------------CCCceEE--EEeCCeEEEEEcceeccc
Q psy12425        298 PLRNANAIQNHNAQFQCTITG-CPKPTISWLKG--SREIT-------------PSARHHI--FAEGDTYTLIINSVYGVD  359 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~--~~~~~-------------~~~~~~~--~~~~~~~~l~i~~~~~~d  359 (591)
                      .+..+.+.+|++|+|.|.... .....+.|++.  +....             ...+..+  ...+...+|.|.++..+|
T Consensus         6 ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (114)
T d2ak4d1           6 AQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVD   85 (114)
T ss_dssp             CCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             cCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccccc
Confidence            345566889999999998654 34456889872  21110             0011122  223446789999999999


Q ss_pred             ceEEEEEEEeCCc
Q psy12425        360 ADEYVCRAVNKGG  372 (591)
Q Consensus       360 ~g~y~c~a~n~~g  372 (591)
                      +|.|.|.+....+
T Consensus        86 sg~YyCa~~~~~~   98 (114)
T d2ak4d1          86 SAVYFCALSGFYN   98 (114)
T ss_dssp             CEEEEEEEECSBT
T ss_pred             CCCceEeCCCCCC
Confidence            9999998766543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.81  E-value=6.4e-05  Score=51.09  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=39.7

Q ss_pred             cCCeEEEEEEeccCC--CceEEEEEC--CEEe---------------ecC--CceeEEE--eCCeEEEEEcccCCCCceE
Q psy12425          9 EGDNTKVKIFYAGDQ--PMEVSLTKN--GRVV---------------QSD--DRFKFTV--LDDYIIIFIKEIRKEDAGD   65 (591)
Q Consensus         9 ~G~~~~l~C~~~~~p--~~~v~W~~~--~~~~---------------~~~--~~~~~~~--~~~~~~l~i~~~~~~d~g~   65 (591)
                      +|++++|.|.+.|..  .-.+.|+|-  |+.+               .+.  .|+.+..  ..+...|+|.+|+++|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            599999999999853  346889862  2211               111  3444432  2344689999999999999


Q ss_pred             EEEEEEc
Q psy12425         66 YTVNLSN   72 (591)
Q Consensus        66 Y~c~~~n   72 (591)
                      |.|....
T Consensus        81 YYCAr~~   87 (103)
T d1oari_          81 YYCARMW   87 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeEEEC
Confidence            9997543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.80  E-value=4.5e-05  Score=53.09  Aligned_cols=68  Identities=13%  Similarity=0.271  Sum_probs=46.9

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------eec-----------CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQS-----------DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~~-----------~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      .-.+++|++++|.|.+.|..  ...+.|+|-  |+.      |..           ..|+.+..+  .+...|+|.+|+.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            34689999999999998843  456789873  211      111           124444432  3346799999999


Q ss_pred             CCceEEEEEEE
Q psy12425         61 EDAGDYTVNLS   71 (591)
Q Consensus        61 ~d~g~Y~c~~~   71 (591)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d2p49b1          89 EDTATYYCAAG   99 (121)
T ss_dssp             GGCEEEEEEES
T ss_pred             cceeEEeeecc
Confidence            99999999753

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.79  E-value=4.6e-05  Score=52.87  Aligned_cols=70  Identities=16%  Similarity=0.243  Sum_probs=48.1

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      .-.+++|++++|.|.+.|..  .-.+.|+|-  |+.      |.         +  ..|+.+..+  .+...|+|.++++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            34689999999999999854  335788762  211      11         1  134444432  3446799999999


Q ss_pred             CCceEEEEEEEcC
Q psy12425         61 EDAGDYTVNLSNS   73 (591)
Q Consensus        61 ~d~g~Y~c~~~n~   73 (591)
                      +|++.|.|.....
T Consensus        89 eDtAvYYCAr~~~  101 (118)
T d2fbjh1          89 EDTALYYCARLHY  101 (118)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcceEEEeeEecC
Confidence            9999999986543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.78  E-value=6.1e-05  Score=52.24  Aligned_cols=68  Identities=18%  Similarity=0.254  Sum_probs=47.7

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------e---------ec--CCceeEEE--eCCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------V---------QS--DDRFKFTV--LDDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~---------~~--~~~~~~~~--~~~~~~l~i~~~~~   60 (591)
                      ...+++|++++|.|.+.|..  .-.+.|.|-  |+.      |         .+  ..|+.+..  ..+...|.|.+|+.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence            45789999999999998843  446788772  211      1         11  13455543  23447899999999


Q ss_pred             CCceEEEEEEE
Q psy12425         61 EDAGDYTVNLS   71 (591)
Q Consensus        61 ~d~g~Y~c~~~   71 (591)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (118)
T d1ct8b1          89 EDSAIYYCARY   99 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeee
Confidence            99999999653

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.78  E-value=8.7e-05  Score=52.02  Aligned_cols=68  Identities=13%  Similarity=0.140  Sum_probs=47.7

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      ...+++|++++|.|.+.|..  ...+.|+|-  |+.      +.         +  ..|+.+..+  .+...|+|.++++
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~   88 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence            45689999999999998743  346789772  221      11         1  134545432  3456799999999


Q ss_pred             CCceEEEEEEE
Q psy12425         61 EDAGDYTVNLS   71 (591)
Q Consensus        61 ~d~g~Y~c~~~   71 (591)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1j05b_          89 EDTAVYYCAPF   99 (121)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeEee
Confidence            99999999754

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.77  E-value=0.00013  Score=51.16  Aligned_cols=68  Identities=13%  Similarity=0.239  Sum_probs=47.6

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      .-.+++|++++|.|.+.|..  ...+.|+|-  |+.      |.         +  ..|+.+..+  .+...|+|.++++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            34689999999999998854  346788872  211      11         1  234455443  3447899999999


Q ss_pred             CCceEEEEEEE
Q psy12425         61 EDAGDYTVNLS   71 (591)
Q Consensus        61 ~d~g~Y~c~~~   71 (591)
                      +|++.|.|...
T Consensus        89 eDtavYYCAr~   99 (126)
T d1dfbh1          89 EDMALYYCVKG   99 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEEec
Confidence            99999999753

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.76  E-value=9.2e-05  Score=52.46  Aligned_cols=71  Identities=13%  Similarity=0.271  Sum_probs=48.8

Q ss_pred             cccceeccccEEEEEEEcCCC--CCeeEEecC--CccC------------CCCCceEEEE--eCCeEEEEEcceecccce
Q psy12425        300 RNANAIQNHNAQFQCTITGCP--KPTISWLKG--SREI------------TPSARHHIFA--EGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       300 ~~~~~~~g~~~~l~c~~~~~p--~~~v~W~~~--~~~~------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g  361 (591)
                      ..+.+.+|++++|+|...+..  ..-+.|++.  +...            ...++.....  .+....|.|.+++++|++
T Consensus         8 ~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa   87 (111)
T d1cd0a_           8 HSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEA   87 (111)
T ss_dssp             SEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCc
Confidence            345688999999999987643  234889873  2110            1123444443  345779999999999999


Q ss_pred             EEEEEEEeC
Q psy12425        362 EYVCRAVNK  370 (591)
Q Consensus       362 ~y~c~a~n~  370 (591)
                      .|.|.+.+.
T Consensus        88 ~YyCA~~~~   96 (111)
T d1cd0a_          88 DYYCQSYDA   96 (111)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEeeccC
Confidence            999987543

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.75  E-value=0.00011  Score=51.57  Aligned_cols=68  Identities=15%  Similarity=0.190  Sum_probs=48.4

Q ss_pred             ceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccC
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIR   59 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~   59 (591)
                      ....+++|++++|.|.+.|..  .-.+.|+|-  |+.      |.         +  ..|+.+..+  .+...|+|++|+
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~   86 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLT   86 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccC
Confidence            356789999999999999853  446788772  211      11         1  245555533  355789999999


Q ss_pred             CCCceEEEEEE
Q psy12425         60 KEDAGDYTVNL   70 (591)
Q Consensus        60 ~~d~g~Y~c~~   70 (591)
                      .+|++.|.|..
T Consensus        87 ~eDTAvYYCAr   97 (126)
T d1lmka1          87 SEDSAVYYCAR   97 (126)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEee
Confidence            99999999964

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.75  E-value=0.00015  Score=50.79  Aligned_cols=69  Identities=13%  Similarity=0.240  Sum_probs=48.1

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------e---------ec--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------V---------QS--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~---------~~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      .-.|++|++++|.|.+.|..  .-.+.|+|-  |+.      |         .+  ..|+.+..+  .+...|+|++|+.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            34589999999999999854  346789872  211      1         11  245555433  3457899999999


Q ss_pred             CCceEEEEEEEc
Q psy12425         61 EDAGDYTVNLSN   72 (591)
Q Consensus        61 ~d~g~Y~c~~~n   72 (591)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (122)
T d1bz7b1          89 EDTAIYYCTRGG  100 (122)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCceEEEeecCC
Confidence            999999997543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.75  E-value=0.00013  Score=51.30  Aligned_cols=69  Identities=17%  Similarity=0.219  Sum_probs=48.5

Q ss_pred             eeeeecCCeEEEEEEeccCCC--ceEEEEEC--CE---------------Eeec--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQP--MEVSLTKN--GR---------------VVQS--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p~--~~v~W~~~--~~---------------~~~~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      .-.+++|++++|.|.+.|..-  -.+.|+|-  |+               ...+  ..|+.+..+  .+...|+|.++++
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS   88 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence            456899999999999998543  35678762  11               1112  245555543  3457899999999


Q ss_pred             CCceEEEEEEEc
Q psy12425         61 EDAGDYTVNLSN   72 (591)
Q Consensus        61 ~d~g~Y~c~~~n   72 (591)
                      +|++.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (128)
T d2nxyd1          89 DDTAVYFCAGVY  100 (128)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cCceEEEEeEEe
Confidence            999999998643

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.74  E-value=8e-05  Score=52.65  Aligned_cols=69  Identities=16%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             eeecCCCeEEEEEeeecc-CCCeEEEeeC--CeE---ee---------eccceEEEecCCeeEEEEeccCCCcceeEEEE
Q psy12425        398 AYFDKGENVVVKIPFTGY-PKPKITWYRD--NEV---IE---------SGGHFHVETSERHAILTIRDASNVDTAPYRVV  462 (591)
Q Consensus       398 ~~~~~g~~~~l~c~~~~~-p~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~c~  462 (591)
                      +.+.+|++++|.|...+. ....+.|++.  |..   +.         ...++..........|.|.+++++|+|.|.|.
T Consensus         8 vsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   87 (110)
T d2esvd1           8 MDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCI   87 (110)
T ss_dssp             EEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEE
Confidence            567889999999987653 3456899872  221   10         11223333445678899999999999999998


Q ss_pred             EEcC
Q psy12425        463 AEND  466 (591)
Q Consensus       463 a~n~  466 (591)
                      +...
T Consensus        88 ~~~~   91 (110)
T d2esvd1          88 VVRS   91 (110)
T ss_dssp             EEES
T ss_pred             EeCC
Confidence            8644

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.74  E-value=0.00012  Score=52.36  Aligned_cols=72  Identities=15%  Similarity=0.250  Sum_probs=48.8

Q ss_pred             ccccceeccccEEEEEEEcC-CCCCeeEEecCC--ccC-------------CCCCceEEEE--eCCeEEEEEcceecccc
Q psy12425        299 LRNANAIQNHNAQFQCTITG-CPKPTISWLKGS--REI-------------TPSARHHIFA--EGDTYTLIINSVYGVDA  360 (591)
Q Consensus       299 ~~~~~~~~g~~~~l~c~~~~-~p~~~v~W~~~~--~~~-------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~  360 (591)
                      +..+.+.+|++|+|.|.... .....+.|++..  ...             ....++.+..  .+....|.|.+++++|+
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS   85 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccc
Confidence            34566889999999999754 444568898732  110             0012233332  33467899999999999


Q ss_pred             eEEEEEEEeC
Q psy12425        361 DEYVCRAVNK  370 (591)
Q Consensus       361 g~y~c~a~n~  370 (591)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1fo0a_          86 AVYFCAMRGD   95 (115)
T ss_dssp             EEEEEEEECC
T ss_pred             ccccceeecC
Confidence            9999997654

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=9.8e-05  Score=51.48  Aligned_cols=68  Identities=13%  Similarity=0.154  Sum_probs=48.2

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~~   60 (591)
                      ...+++|+++.|.|.+.|..  .-.+.|.|-  |+.      |.         +  ..|+.+..+  .+...|+|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~   88 (124)
T d1yedb1           9 PELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKS   88 (124)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCC
Confidence            45689999999999999854  346788772  211      11         1  245555543  3557899999999


Q ss_pred             CCceEEEEEEE
Q psy12425         61 EDAGDYTVNLS   71 (591)
Q Consensus        61 ~d~g~Y~c~~~   71 (591)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAR~   99 (124)
T d1yedb1          89 EDSAVYFCTRW   99 (124)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEeccc
Confidence            99999999743

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=0.0001  Score=51.98  Aligned_cols=69  Identities=13%  Similarity=0.187  Sum_probs=48.5

Q ss_pred             ceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------e---------ec--CCceeEEEe--CCeEEEEEcccC
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------V---------QS--DDRFKFTVL--DDYIIIFIKEIR   59 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~---------~~--~~~~~~~~~--~~~~~l~i~~~~   59 (591)
                      ..-.+++|++++|.|.+.|..  .-.+.|+|-  |+.      |         .+  ..|+.++.+  .+...|+|++++
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~   87 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLT   87 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccC
Confidence            345689999999999998854  346788772  211      1         11  245555543  345789999999


Q ss_pred             CCCceEEEEEEE
Q psy12425         60 KEDAGDYTVNLS   71 (591)
Q Consensus        60 ~~d~g~Y~c~~~   71 (591)
                      ++|++.|.|...
T Consensus        88 ~eDtAvYYCAR~   99 (125)
T d1rihh1          88 SEDSAVYYCARE   99 (125)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEEeee
Confidence            999999999754

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.73  E-value=3.3e-05  Score=53.05  Aligned_cols=67  Identities=13%  Similarity=0.107  Sum_probs=42.5

Q ss_pred             eecCCeEEEEEEecc-CC-CceEEEEECCEEeecCCce-eEEEeCC-e-EEEEEcccCCCCceEEEEEEEcC
Q psy12425          7 IPEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDRF-KFTVLDD-Y-IIIFIKEIRKEDAGDYTVNLSNS   73 (591)
Q Consensus         7 v~~G~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~-~~~~~~~-~-~~l~i~~~~~~d~g~Y~c~~~n~   73 (591)
                      +..|+.++|.|.+.| .| ...|+|++||+.+..+... .....++ . .......+.+++...|+|.+.-.
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHW   85 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEEC
Confidence            456899999999999 44 5799999999888643111 1111222 1 12222234456677899999754

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.72  E-value=0.0001  Score=50.26  Aligned_cols=64  Identities=23%  Similarity=0.470  Sum_probs=45.5

Q ss_pred             CCeEEEEEeeeccCCCeEEEeeC--CeE---e--------eeccceEEE--ecCCeeEEEEeccCCCcceeEEEEEEcC
Q psy12425        403 GENVVVKIPFTGYPKPKITWYRD--NEV---I--------ESGGHFHVE--TSERHAILTIRDASNVDTAPYRVVAEND  466 (591)
Q Consensus       403 g~~~~l~c~~~~~p~~~v~W~~~--~~~---~--------~~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~c~a~n~  466 (591)
                      |+.++|.|.........+.|++.  +..   +        ....++...  ...+...|.|.+++++|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            67899999988777778999872  111   1        112234333  2345678999999999999999988654

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.72  E-value=5.6e-05  Score=52.53  Aligned_cols=67  Identities=12%  Similarity=0.155  Sum_probs=47.3

Q ss_pred             eeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------eec-----------CCceeEEE--eCCeEEEEEcccCC
Q psy12425          4 ALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQS-----------DDRFKFTV--LDDYIIIFIKEIRK   60 (591)
Q Consensus         4 ~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~~-----------~~~~~~~~--~~~~~~l~i~~~~~   60 (591)
                      ...+.+|++++|.|.+.|..  .-.+.|+|-  |+.      |..           ..|+.+..  ..+...|+|.++++
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC
Confidence            45689999999999999854  346789872  211      111           13554543  23447899999999


Q ss_pred             CCceEEEEEE
Q psy12425         61 EDAGDYTVNL   70 (591)
Q Consensus        61 ~d~g~Y~c~~   70 (591)
                      +|++.|.|..
T Consensus        89 eDTAvYYCAr   98 (119)
T d1eapb1          89 EDSAVYFCKR   98 (119)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEEE
Confidence            9999999964

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.72  E-value=7.7e-05  Score=52.36  Aligned_cols=68  Identities=19%  Similarity=0.287  Sum_probs=47.7

Q ss_pred             ceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccC
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIR   59 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~   59 (591)
                      ....+++|++++|.|.+.|..  .-.+.|+|-  |+.      |.         +  ..|+.+..+  .+...|+|.+|+
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~   87 (127)
T d1n0xh1           8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR   87 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccC
Confidence            456789999999999999854  335788772  211      11         1  134445442  344789999999


Q ss_pred             CCCceEEEEEE
Q psy12425         60 KEDAGDYTVNL   70 (591)
Q Consensus        60 ~~d~g~Y~c~~   70 (591)
                      ++|++.|.|.-
T Consensus        88 ~eDtAvYYCAR   98 (127)
T d1n0xh1          88 SADTAVYYCAR   98 (127)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCCceEEEEEe
Confidence            99999999963

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.71  E-value=0.00011  Score=51.73  Aligned_cols=66  Identities=12%  Similarity=0.170  Sum_probs=46.9

Q ss_pred             eeeecCCeEEEEEEeccCCC---ceEEEEEC--CEEe--------------ec--CCceeEEE--eCCeEEEEEcccCCC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQP---MEVSLTKN--GRVV--------------QS--DDRFKFTV--LDDYIIIFIKEIRKE   61 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p~---~~v~W~~~--~~~~--------------~~--~~~~~~~~--~~~~~~l~i~~~~~~   61 (591)
                      -.|++|++++|.|.+.|..-   ..+.|+|-  |+.+              .+  ..|+.+..  ..+...|+|.+++++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            45789999999999998532   46789872  3221              11  13444444  344578999999999


Q ss_pred             CceEEEEEE
Q psy12425         62 DAGDYTVNL   70 (591)
Q Consensus        62 d~g~Y~c~~   70 (591)
                      |++.|.|..
T Consensus        90 DtAvYyCAr   98 (127)
T d3cx5j1          90 DTATYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEeee
Confidence            999999974

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.71  E-value=0.00013  Score=51.01  Aligned_cols=67  Identities=16%  Similarity=0.272  Sum_probs=47.2

Q ss_pred             eeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccCCC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIRKE   61 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~~~   61 (591)
                      -.+.+|++++|.|.+.|..  .-.+.|+|-  |+.      |.         +  ..|+.+..+  .+...|+|++++++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            4578999999999998753  335788762  211      11         1  135555543  34578999999999


Q ss_pred             CceEEEEEEE
Q psy12425         62 DAGDYTVNLS   71 (591)
Q Consensus        62 d~g~Y~c~~~   71 (591)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1ol0a_          90 DTAVYYCARE   99 (121)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEEEe
Confidence            9999999754

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.71  E-value=0.00011  Score=51.51  Aligned_cols=68  Identities=10%  Similarity=0.135  Sum_probs=47.7

Q ss_pred             ceeeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------ee---------c--CCceeEEEe--CCeEEEEEcccC
Q psy12425          3 NALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------VQ---------S--DDRFKFTVL--DDYIIIFIKEIR   59 (591)
Q Consensus         3 ~~~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~~---------~--~~~~~~~~~--~~~~~l~i~~~~   59 (591)
                      ....+++|++++|.|.+.|..  .-.+.|+|-  |+.      |.         +  ..|+.++.+  .+...|+|.+|+
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~   87 (124)
T d2b1hh1           8 GAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLK   87 (124)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccc
Confidence            356789999999999999854  235788872  211      11         1  245555543  334789999999


Q ss_pred             CCCceEEEEEE
Q psy12425         60 KEDAGDYTVNL   70 (591)
Q Consensus        60 ~~d~g~Y~c~~   70 (591)
                      ++|++.|.|..
T Consensus        88 ~eDTA~YYCAR   98 (124)
T d2b1hh1          88 PSDTALYYCAR   98 (124)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccceEEEEee
Confidence            99999999954

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.71  E-value=7.5e-05  Score=52.33  Aligned_cols=67  Identities=13%  Similarity=0.234  Sum_probs=47.3

Q ss_pred             eeeecCCeEEEEEEeccCC--CceEEEEEC--CEE------e---------ec--CCceeEEEe--CCeEEEEEcccCCC
Q psy12425          5 LYIPEGDNTKVKIFYAGDQ--PMEVSLTKN--GRV------V---------QS--DDRFKFTVL--DDYIIIFIKEIRKE   61 (591)
Q Consensus         5 ~~v~~G~~~~l~C~~~~~p--~~~v~W~~~--~~~------~---------~~--~~~~~~~~~--~~~~~l~i~~~~~~   61 (591)
                      -.|++|++++|.|.+.|..  ...+.|+|-  |+.      |         .+  ..|+.+..+  .+...|+|++|+++
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            4589999999999998843  346789872  211      1         11  134555443  34578999999999


Q ss_pred             CceEEEEEEE
Q psy12425         62 DAGDYTVNLS   71 (591)
Q Consensus        62 d~g~Y~c~~~   71 (591)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (125)
T d1op3h1          90 DTAIYYCARK   99 (125)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceeEeEeec
Confidence            9999999754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.71  E-value=4.2e-05  Score=54.11  Aligned_cols=73  Identities=15%  Similarity=0.229  Sum_probs=49.1

Q ss_pred             eccccceeccccEEEEEEEcCCCCCeeEEecC--CccC-------C-----CCCceEEE--EeCCeEEEEEcceecccce
Q psy12425        298 PLRNANAIQNHNAQFQCTITGCPKPTISWLKG--SREI-------T-----PSARHHIF--AEGDTYTLIINSVYGVDAD  361 (591)
Q Consensus       298 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~W~~~--~~~~-------~-----~~~~~~~~--~~~~~~~l~i~~~~~~d~g  361 (591)
                      .+..+.+.+|+.++|.|.........+.|++.  |...       .     ...++...  .++....|.|.++.++|++
T Consensus         6 ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa   85 (110)
T d1ac6a_           6 TEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSA   85 (110)
T ss_dssp             CCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCE
T ss_pred             CCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCc
Confidence            34556688999999999987655567999873  2111       0     01122222  2233568999999999999


Q ss_pred             EEEEEEEeC
Q psy12425        362 EYVCRAVNK  370 (591)
Q Consensus       362 ~y~c~a~n~  370 (591)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (110)
T d1ac6a_          86 VYYCALSGG   94 (110)
T ss_dssp             EEEEEEEET
T ss_pred             ccceeecCC
Confidence            999987643